Citrus Sinensis ID: 016208
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SA77 | 419 | UDP-arabinose 4-epimerase | yes | no | 0.989 | 0.928 | 0.809 | 0.0 | |
| Q8H0B2 | 406 | Probable UDP-arabinose 4- | yes | no | 0.992 | 0.960 | 0.805 | 0.0 | |
| Q8H0B6 | 391 | Probable UDP-arabinose 4- | no | no | 0.992 | 0.997 | 0.807 | 0.0 | |
| Q9SUN3 | 411 | Probable UDP-arabinose 4- | no | no | 0.992 | 0.948 | 0.794 | 0.0 | |
| O64749 | 417 | Putative UDP-arabinose 4- | no | no | 0.992 | 0.935 | 0.792 | 0.0 | |
| Q8H930 | 421 | Probable UDP-arabinose 4- | no | no | 0.989 | 0.923 | 0.793 | 0.0 | |
| Q9FI17 | 436 | Putative UDP-arabinose 4- | no | no | 0.992 | 0.894 | 0.774 | 1e-177 | |
| P55180 | 339 | UDP-glucose 4-epimerase O | yes | no | 0.842 | 0.976 | 0.422 | 4e-70 | |
| Q9KDV3 | 334 | UDP-glucose 4-epimerase O | yes | no | 0.832 | 0.979 | 0.403 | 9e-70 | |
| Q9SN58 | 351 | UDP-glucose 4-epimerase 2 | no | no | 0.849 | 0.951 | 0.416 | 5e-68 |
| >sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/389 (80%), Positives = 344/389 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D +K N+ G+IL+ + LTA+ IFM SP N+ F RHEPGVTHVLVTGGAGY
Sbjct: 22 LDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPEPGRLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
ENAFDAVMHFAAVAYVGEST PL+YYHNITSNTLV+LE MAAH VKTLIYSSTCATYG
Sbjct: 142 TENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE TPQ PINPYGKAKKM+EDII+DFSK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARGI+PGL+I+GTDY TADGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQ 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP KVGIYNVGTGKG SVKEFVEACKKATGV IK++YL RR GDYAEVYSDPSKIR E
Sbjct: 322 KAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYG 389
LNWTA+ T+L+ SL+ AWRWQK H NGYG
Sbjct: 382 LNWTAKHTNLKESLETAWRWQKLHRNGYG 410
|
Acts as a UDP-D-xylose 4-epimerase but lacks both UDP-D-glucose and UDP-D-glucuronic acid 4-epimerase activities in vitro. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 5 |
| >sp|Q8H0B2|ARAE3_ORYSJ Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/391 (80%), Positives = 347/391 (88%), Gaps = 1/391 (0%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
M+ A RK + G+++ A VLT + IF+ SP + F RHEPGVTHVLVTGGAGY
Sbjct: 15 MEYFDARRKPHNVGKVIAALVLTTLCIFILKQSPGFGGSSVFSRHEPGVTHVLVTGGAGY 74
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHA+LRLLKD+YRVTIVDNLSRGNMGAVKVLQELFPQPG+LQFIYADLGD K VNKIF
Sbjct: 75 IGSHASLRLLKDNYRVTIVDNLSRGNMGAVKVLQELFPQPGRLQFIYADLGDQKTVNKIF 134
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTL+ILEAMA+H VKTLIYSSTCATYG
Sbjct: 135 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHGVKTLIYSSTCATYG 194
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSK-TTNMAVMILRYFNVIGSDPEGRLG 239
EP+KMPI E+T Q PINPYGKAKKM+EDII+DF+K +MAVMILRYFNVIGSDPEGRLG
Sbjct: 195 EPEKMPIVETTRQLPINPYGKAKKMAEDIILDFTKGRKDMAVMILRYFNVIGSDPEGRLG 254
Query: 240 EAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLAL 299
EAP PELREHGRISGACFDAA GIIPGLK++GTDY T DGTC+RDYIDVTDLVDAHV AL
Sbjct: 255 EAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKAL 314
Query: 300 ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRD 359
A+P KVGIYNVGTG+GRSVKEFV+ACKKATGVNIK+EYLSRRPGDYAEVYSDP+KI
Sbjct: 315 NKAEPSKVGIYNVGTGRGRSVKEFVDACKKATGVNIKIEYLSRRPGDYAEVYSDPTKINT 374
Query: 360 ELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
ELNWTA++TDL+ SL +AWRWQK+H GYGS
Sbjct: 375 ELNWTAQYTDLKESLSVAWRWQKSHPRGYGS 405
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q8H0B6|ARAE2_ORYSJ Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/390 (80%), Positives = 340/390 (87%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
MD + RK N G+ VA LT + I + SP ST F RHE GVTHVLVTGGAGY
Sbjct: 1 MDFGDSRRKPNVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGY 60
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHA LRLL+D+YRVTIVDNLSRGNMGAV+VLQ LFP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 61 IGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVNKIF 120
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTL +LEAMAA+ VKTLIYSSTCATYG
Sbjct: 121 SENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYG 180
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE+TPQ PINPYGKAKKM+EDII+DFSK + MAVMILRYFNVIGSDP GRLGE
Sbjct: 181 EPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGE 240
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAA GIIPGLK+RGTDY TADGTC+RDYIDVTDLVDAHV AL
Sbjct: 241 APRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALD 300
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A+PGKVGIYNVGTG GRSVKEFVEACK ATG +IKV +L+RRPGDYAEVYSDPSKI DE
Sbjct: 301 KAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDE 360
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTAR+ DL+ SL AW+WQK H NGYGS
Sbjct: 361 LNWTARYIDLRESLSTAWKWQKAHPNGYGS 390
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q9SUN3|ARAE3_ARATH Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/390 (79%), Positives = 347/390 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
M+ + RK N G+I++ LTA+ IFM +P S AF R E GVTHVLVTGGAGY
Sbjct: 21 MEYLEPKRKSNVMGKIILVVSLTALCIFMLKHAPSFTSPTAFSRSEEGVTHVLVTGGAGY 80
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLKDSYRVTIVDNLSRGN+GAVKVLQ LFP+PG+LQFIYADLGDAKAV+KIF
Sbjct: 81 IGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQGLFPEPGRLQFIYADLGDAKAVDKIF 140
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTLV+LEA+A HKVK LIYSSTCATYG
Sbjct: 141 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVARHKVKKLIYSSTCATYG 200
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPDKMPI E TPQ PINPYGKAKKM+ED+I+DFSK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 201 EPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 260
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARG+IPGL+++GTDY T DGTCVRDYIDVTDLVDAHV AL
Sbjct: 261 APKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALE 320
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP VGIYNVGTGKGRSVKEFVEACKKATGV+IKV++L RRPGDYAEVYSDP+KI +
Sbjct: 321 KAKPRNVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDFLPRRPGDYAEVYSDPAKILRD 380
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNW+AR+T+LQ SL++AW+WQKTH +GY S
Sbjct: 381 LNWSARYTNLQESLEVAWKWQKTHPHGYAS 410
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|O64749|ARAE2_ARATH Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/390 (79%), Positives = 343/390 (87%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D + N+ G+I++ LTA+ I + + SP N+ F R EPGVTHVLVTGGAGY
Sbjct: 21 LDFADPKKNNNYMGKIVLVMTLTAMCILLLNQSPTFNTPSVFSRSEPGVTHVLVTGGAGY 80
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLKDSYRVTIVDNLSRGN+GAVK+LQ+LFP+PG+LQFIYADLGDA AVNKIF
Sbjct: 81 IGSHAALRLLKDSYRVTIVDNLSRGNLGAVKILQQLFPEPGKLQFIYADLGDANAVNKIF 140
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGEST PL+YYHNITSNTLV+LE MAAH VKTLIYSSTCATYG
Sbjct: 141 SENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYG 200
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP+KMPITE TPQ PINPYGKAKKM+EDII+DFSK + MAVMILRYFNVIGSDPEGRLGE
Sbjct: 201 EPEKMPITEETPQVPINPYGKAKKMAEDIILDFSKNSIMAVMILRYFNVIGSDPEGRLGE 260
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PEL EHGRISGACFDAARGIIPGL+I+GTDY T DGTCVRDYIDVTDLVDAHV AL
Sbjct: 261 APRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALE 320
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP KVGI+NVGTGKG SVKEFVEACKKATGV+IKV+YL RR GDYAEVYSDP KI++E
Sbjct: 321 KAKPRKVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEE 380
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTA+ T+LQ SL++AWRWQK H +GYGS
Sbjct: 381 LNWTAKHTNLQESLKMAWRWQKLHRSGYGS 410
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q8H930|ARAE1_ORYSJ Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/392 (79%), Positives = 342/392 (87%), Gaps = 3/392 (0%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKA-FPRHEPGVTHVLVTGGAG 59
MD RK + +IL+ ++LTA+ + M + P T + F HEPGVTHVLVTGGAG
Sbjct: 23 MDFSDPKRKPRYLSKILMVALLTAMCVVMLTQPPCHRRTPSVFSIHEPGVTHVLVTGGAG 82
Query: 60 YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI 119
YIGSHAALRLLKDS+RVTIVDNLSRGNMGA+KVLQ LF +PG+LQFIYADLGD KAVN+I
Sbjct: 83 YIGSHAALRLLKDSFRVTIVDNLSRGNMGAIKVLQNLFSEPGRLQFIYADLGDPKAVNRI 142
Query: 120 FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATY 179
FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLV+LEAMAAH V+TLIYSSTCATY
Sbjct: 143 FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHNVRTLIYSSTCATY 202
Query: 180 GEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGR 237
GEP+KMPITE TPQ PINPYGKAKKM+EDII+DFSK+ +MAVMILRYFNVIGSDPEGR
Sbjct: 203 GEPEKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGR 262
Query: 238 LGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVL 297
LGEAP PELREHGRISGACFDAA GIIPGLK++GTDY T DGTCVRDYIDVTDLVDAHV
Sbjct: 263 LGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVK 322
Query: 298 ALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKI 357
AL A+ GKVGIYNVGTGKGRSVKEFVEACKKATGV+IKV+Y RRPGDYAEVYSDP+KI
Sbjct: 323 ALNKAERGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKI 382
Query: 358 RDELNWTARFTDLQGSLQIAWRWQKTHINGYG 389
ELNWTA+ TDL SL++AW WQK H +GYG
Sbjct: 383 NSELNWTAQHTDLLESLRVAWTWQKKHRSGYG 414
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|Q9FI17|ARAE4_ARATH Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/390 (77%), Positives = 336/390 (86%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
MD + K N G++L+ + L + I + S S S AF + E GVTHVLVTGGAGY
Sbjct: 46 MDCLEPKTKNNLTGKLLLVASLLILAIIVISQSSSFTSPSAFSQREEGVTHVLVTGGAGY 105
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLL+DSYRVTIVDNLSRGN+GAVK LQ+LFPQ G+LQFIYADLGD AV KIF
Sbjct: 106 IGSHAALRLLRDSYRVTIVDNLSRGNLGAVKTLQQLFPQTGRLQFIYADLGDPLAVEKIF 165
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTL PL+YYHNITSNTL +LEAMA HKVK LIYSSTCATYG
Sbjct: 166 SENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYG 225
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP+KMPITE TPQ PINPYGKAKKM+ED+I+DFSK ++MAVMILRYFNVIGSDP GRLGE
Sbjct: 226 EPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGE 285
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELRE GRISGACFDAARG IPGL+++GTDY T+DGTC+RDYIDVTDLVDAHV AL
Sbjct: 286 APRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALE 345
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A+P KVGIYNVGTGKGRSVKEFVEACKKATGV IKV++L RRPGDYAEVYSDP+KI +
Sbjct: 346 KAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKD 405
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTARFT+LQ SLQ+AWRWQK H +GY S
Sbjct: 406 LNWTARFTNLQDSLQVAWRWQKIHPHGYNS 435
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 |
| >sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/343 (42%), Positives = 199/343 (58%), Gaps = 12/343 (3%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAGYIGSH + LL Y + ++DNLS + A+ ++E+ + L F ADL
Sbjct: 3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGK--DLTFYEADLL 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D +AV+ +FAEN +AV+HFA + VGES PL+YYHN + T ++ EAM + VK ++
Sbjct: 61 DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIV 120
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTN-MAVMILRYFNVI 230
+SS+ YG P+ PITE P NPYG+ K M E I+ D N +V +LRYFN
Sbjct: 121 FSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPF 180
Query: 231 GSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
G+ P GR+GE P+ P + A G + L + G DY T DGT VRDYI V
Sbjct: 181 GAHPSGRIGEDPNGIPN-----NLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHV 235
Query: 289 TDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDY 347
DL + HV AL YN+GTG G SV E V+A +K +G + + RRPGD
Sbjct: 236 VDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDI 295
Query: 348 AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
A ++DP+K + EL W A+ L+ +WRWQ +++NGY S
Sbjct: 296 ATCFADPAKAKRELGWEAK-RGLEEMCADSWRWQSSNVNGYKS 337
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 194/342 (56%), Gaps = 15/342 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAGYIGSH L LL+ +V ++DNL +G+ GA+ + F + D+
Sbjct: 3 ILVTGGAGYIGSHTVLFLLEQGEQVIVLDNLQKGHAGALS----------DVTFYHGDIR 52
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + ++ IF ++ D V+HFAA + VGES +P+ YY N T +L+ M H VK ++
Sbjct: 53 DDQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKMLEHDVKKIV 112
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+SST ATYGEP ++PI ES P P NPYG+ K E + + + + LRYFN G
Sbjct: 113 FSSTAATYGEPVQIPIQESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYVCLRYFNAAG 172
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+DP GR+GE PE + A G + I G DY T DG+C+RDYI V DL
Sbjct: 173 ADPNGRIGEDHSPE----SHLIPIVLQVALGQRERVAIFGDDYQTEDGSCIRDYIHVMDL 228
Query: 292 VDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEV 350
+AH LA + K G+ G +N+G GKG SVKE +E C++ TG I E RR GD A +
Sbjct: 229 ANAHYLACEHLRKDGQSGSFNLGNGKGFSVKEVIEVCRQVTGHPIPAEIAPRRSGDPASL 288
Query: 351 YSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSRN 392
+ K + L W ++ L+ ++ AW W K H +GY + N
Sbjct: 289 IASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHPHGYSTEN 330
|
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9SN58|GALE2_ARATH UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 199/346 (57%), Gaps = 12/346 (3%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQ-LQFIYAD 109
+VLV+GGAGYIGSH L+LL Y V +VDNL + +++ +++L + G+ L F D
Sbjct: 5 NVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQVD 64
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L D A+ KIF+E FDAV+HFA + VGES +PL YY+N T+ +LE MA H K
Sbjct: 65 LRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKN 124
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID-FSKTTNMAVMILRYFN 228
L++SS+ YG P ++P TE P +NPYG+ K E+I D + +++LRYFN
Sbjct: 125 LVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFN 184
Query: 229 VIGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
+G+ P G +GE P P + A G P L + G DYNT DGT VRDYI
Sbjct: 185 PVGAHPSGDIGEDPRGIPN-----NLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYI 239
Query: 287 DVTDLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D H+ AL + K+G +YN+GTG G SV E V+A +KA+G I + RRP
Sbjct: 240 HVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRP 299
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
GD VY+ + ELNW A++ ++ + W W + GY S
Sbjct: 300 GDAEVVYASTERAESELNWKAKYG-IEEMCRDLWNWASNNPYGYDS 344
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| 225444161 | 418 | PREDICTED: UDP-arabinose 4-epimerase 1 [ | 0.992 | 0.933 | 0.825 | 0.0 | |
| 224086623 | 390 | predicted protein [Populus trichocarpa] | 0.987 | 0.994 | 0.830 | 0.0 | |
| 211906524 | 413 | UDP-D-xylose 4-epimerase [Gossypium hirs | 0.992 | 0.944 | 0.810 | 0.0 | |
| 297846004 | 418 | hypothetical protein ARALYDRAFT_890616 [ | 0.989 | 0.930 | 0.820 | 0.0 | |
| 225465745 | 417 | PREDICTED: UDP-arabinose 4-epimerase 1 [ | 0.994 | 0.937 | 0.810 | 0.0 | |
| 22329866 | 419 | UDP-arabinose 4-epimerase [Arabidopsis t | 0.989 | 0.928 | 0.809 | 0.0 | |
| 326532196 | 412 | predicted protein [Hordeum vulgare subsp | 0.992 | 0.946 | 0.815 | 0.0 | |
| 218195590 | 391 | hypothetical protein OsI_17430 [Oryza sa | 0.992 | 0.997 | 0.810 | 0.0 | |
| 255578061 | 417 | UDP-glucose 4-epimerase, putative [Ricin | 0.992 | 0.935 | 0.802 | 0.0 | |
| 24417398 | 419 | unknown [Arabidopsis thaliana] | 0.989 | 0.928 | 0.807 | 0.0 |
| >gi|225444161|ref|XP_002270765.1| PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera] gi|297740899|emb|CBI31081.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/390 (82%), Positives = 350/390 (89%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
M+ RK N G+IL+A+ LTA+ I M S + N+ F RHEPGVTHVLVTGGAGY
Sbjct: 22 MEYADPKRKSNVVGKILLAATLTALCILMLKQSSNFNTPSPFSRHEPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLKDS+RVTIVDNLSRGN+GA+KVLQE FP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKDSHRVTIVDNLSRGNLGAIKVLQEQFPEPGRLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLV+LEAMAAH V TLIYSSTCATYG
Sbjct: 142 SENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHGVNTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP+KMPITE TPQ PINPYGKAKKM+EDII+DFSK + MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPEKMPITEQTPQVPINPYGKAKKMAEDIILDFSKNSEMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAA G+IPGLK++GTDY T DGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAASGVIPGLKVKGTDYKTPDGTCVRDYIDVTDLVDAHVKALN 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL+RRPGDYAEV+SDPSKI E
Sbjct: 322 KAAPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLARRPGDYAEVFSDPSKIDHE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTA++TDLQ SL++AWRWQK H NGYG+
Sbjct: 382 LNWTAKYTDLQESLRVAWRWQKAHRNGYGT 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086623|ref|XP_002307918.1| predicted protein [Populus trichocarpa] gi|222853894|gb|EEE91441.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/390 (83%), Positives = 351/390 (90%), Gaps = 2/390 (0%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFS--LSPDSNSTKAFPRHEPGVTHVLVTGGA 58
MD + + RK N AG+++ + AV I M SP S F +HE GVTHVLVTGGA
Sbjct: 1 MDFLDSRRKSNSAGKVIAVAFFIAVCIVMLKQVYSPSYTSPDMFSQHELGVTHVLVTGGA 60
Query: 59 GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNK 118
GYIGSHAALRLLKDSYRVTIVDNLSRGN+GAVKVLQELFP+PG+LQFIYADLGDAKAVNK
Sbjct: 61 GYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQELFPEPGRLQFIYADLGDAKAVNK 120
Query: 119 IFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT 178
IFAENAFDAVMHFAAVAYVGEST+EPLRYYHNITSNTLV+LEAMAAH VKTLIYSSTCAT
Sbjct: 121 IFAENAFDAVMHFAAVAYVGESTIEPLRYYHNITSNTLVVLEAMAAHNVKTLIYSSTCAT 180
Query: 179 YGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRL 238
YGEP KMPI E TPQ PINPYGKAKKM+EDIIIDFS TT+MAVMILRYFNVIGSDPEGRL
Sbjct: 181 YGEPIKMPIREETPQLPINPYGKAKKMAEDIIIDFSNTTDMAVMILRYFNVIGSDPEGRL 240
Query: 239 GEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLA 298
GEAP PELREHGRISGACFDAARGI PGLK++GTDY TADGTCVRDYIDVTDLVDAHV A
Sbjct: 241 GEAPRPELREHGRISGACFDAARGITPGLKVKGTDYKTADGTCVRDYIDVTDLVDAHVKA 300
Query: 299 LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIR 358
LA+AKP KVGIYNVGTGKGRSVKEFV+ACKKATGV+IKVEYL RRPGDYAEV+SDPSKI+
Sbjct: 301 LAHAKPRKVGIYNVGTGKGRSVKEFVDACKKATGVDIKVEYLDRRPGDYAEVFSDPSKIK 360
Query: 359 DELNWTARFTDLQGSLQIAWRWQKTHINGY 388
EL+WTA++TDLQ SLQIAW+WQK+H+NGY
Sbjct: 361 QELSWTAQYTDLQKSLQIAWKWQKSHLNGY 390
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906524|gb|ACJ11755.1| UDP-D-xylose 4-epimerase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/390 (81%), Positives = 352/390 (90%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
M+ RK NF G+IL+A+ LTA+ I M SP+ N+ F HE GV HVLVTGGAGY
Sbjct: 22 MEYPDPKRKSNFVGKILMAATLTALCIIMLKQSPNFNTRSRFSEHEEGVIHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLK+SYRVTIVDNLSRGNMGAVKVLQ+LFP+PGQLQF+YADLGD KAVNKIF
Sbjct: 82 IGSHAALRLLKESYRVTIVDNLSRGNMGAVKVLQKLFPEPGQLQFVYADLGDLKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTLVILE+MAAH V+TLIYSSTCATYG
Sbjct: 142 SENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVILESMAAHDVRTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP+KMPITE TPQ PINPYGKAKKM+EDII+D+SK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPEKMPITEETPQVPINPYGKAKKMAEDIILDYSKNSDMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARG+IPGLK++GTDY T DGTC+RDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGVIPGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALK 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKPG+VGIYNVGTG+GRSVKEFVEACKKATGV IKV+YL+RRPGDYAEV+SDP+KIR E
Sbjct: 322 KAKPGEVGIYNVGTGRGRSVKEFVEACKKATGVEIKVDYLARRPGDYAEVFSDPTKIRHE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTA+FTDLQ SLQIAW+WQK H +GY +
Sbjct: 382 LNWTAQFTDLQESLQIAWQWQKAHRDGYAA 411
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846004|ref|XP_002890883.1| hypothetical protein ARALYDRAFT_890616 [Arabidopsis lyrata subsp. lyrata] gi|297336725|gb|EFH67142.1| hypothetical protein ARALYDRAFT_890616 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/389 (82%), Positives = 345/389 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D +K N+ G+IL+ + LTA+ IFM SP N+ F RHEPGVTHVLVTGGAGY
Sbjct: 22 LDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLK+SYRVTIVDNLSRGN+GAVK+LQELFP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKESYRVTIVDNLSRGNLGAVKILQELFPEPGRLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
ENAFDAVMHFAAVAYVGEST PL+YYHNITSNTLV+LE MAAH VKTLIYSSTCATYG
Sbjct: 142 TENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE TPQ PINPYGKAKKM+EDII+DFSK +NMAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPDTMPITEETPQVPINPYGKAKKMAEDIILDFSKNSNMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARGI+PGL+I+GTDY TADGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQ 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP KVGIYNVGTGKG SVKEFVEACKKATGV IK+EYL RR GDYAEVYSDPSKIR E
Sbjct: 322 KAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIEYLPRRAGDYAEVYSDPSKIRKE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYG 389
LNWTA+ T+L+ SL+ AWRWQK H NGYG
Sbjct: 382 LNWTAKHTNLKESLETAWRWQKLHRNGYG 410
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465745|ref|XP_002264946.1| PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera] gi|296087462|emb|CBI34051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/391 (81%), Positives = 350/391 (89%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
MD+ + RK N G++L+A L + I + SP+ +S F +PGVTHVLVTGGAGY
Sbjct: 22 MDLADSRRKSNVTGKVLMAISLITLCIIILKRSPNFSSPSPFSHRQPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLKDS+RVTIVDNLSRGN+GAVKVLQ+LFP P QLQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKDSHRVTIVDNLSRGNLGAVKVLQQLFPDPAQLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+EN FDAVMHFAAVAYVGEST++PLRYYHNITSNTL++L+AMAAH VKTLIYSSTCATYG
Sbjct: 142 SENEFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLMVLKAMAAHGVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP KMPITE TPQ PINPYGKAKKM+ED+IIDFSK ++MAVM+LRYFNVIGSDPEGRLGE
Sbjct: 202 EPKKMPITEGTPQVPINPYGKAKKMAEDMIIDFSKNSDMAVMVLRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAA GIIPGLK++GTDY TADGTCVRDYIDVTDLVDAHV ALA
Sbjct: 262 APRPELREHGRISGACFDAALGIIPGLKVKGTDYKTADGTCVRDYIDVTDLVDAHVKALA 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
+AKP KVGIYNVGTGKGRSVKEFVEACKKATGV+IKVEYL RRPGDYAEVYSDPSKI E
Sbjct: 322 HAKPKKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVEYLDRRPGDYAEVYSDPSKILRE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
LNWTA++T+LQ SLQ AWRWQK+H NGYG+R
Sbjct: 382 LNWTAQYTNLQESLQTAWRWQKSHRNGYGTR 412
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329866|ref|NP_174350.2| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|79318985|ref|NP_001031118.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|75313130|sp|Q9SA77.1|ARAE1_ARATH RecName: Full=UDP-arabinose 4-epimerase 1; AltName: Full=UDP-D-xylose 4-epimerase 1 gi|4587518|gb|AAD25749.1|AC007060_7 Strong similarity to F19I3.8 gi|3033381 putative UDP-galactose-4-epimerase from Arabidopsis thaliana BAC gb|AC004238 and is a member of PF|01370 the NAD dependent epimerase/dehydratase family. EST gb|AA597338 comes from this gene [Arabidopsis thaliana] gi|13272475|gb|AAK17176.1|AF325108_1 unknown protein [Arabidopsis thaliana] gi|18086329|gb|AAL57628.1| At1g30620/T5I8_7 [Arabidopsis thaliana] gi|27363222|gb|AAO11530.1| At1g30620/T5I8_7 [Arabidopsis thaliana] gi|28395529|gb|AAO39213.1| UDP-D-xylose 4-epimerase [Arabidopsis thaliana] gi|222423784|dbj|BAH19858.1| AT1G30620 [Arabidopsis thaliana] gi|332193130|gb|AEE31251.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] gi|332193131|gb|AEE31252.1| UDP-arabinose 4-epimerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/389 (80%), Positives = 344/389 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D +K N+ G+IL+ + LTA+ IFM SP N+ F RHEPGVTHVLVTGGAGY
Sbjct: 22 LDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPEPGRLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
ENAFDAVMHFAAVAYVGEST PL+YYHNITSNTLV+LE MAAH VKTLIYSSTCATYG
Sbjct: 142 TENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE TPQ PINPYGKAKKM+EDII+DFSK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARGI+PGL+I+GTDY TADGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQ 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP KVGIYNVGTGKG SVKEFVEACKKATGV IK++YL RR GDYAEVYSDPSKIR E
Sbjct: 322 KAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYG 389
LNWTA+ T+L+ SL+ AWRWQK H NGYG
Sbjct: 382 LNWTAKHTNLKESLETAWRWQKLHRNGYG 410
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326532196|dbj|BAK01474.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/390 (81%), Positives = 339/390 (86%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
MD RK NFAG+I VA+ LT + I + SP T F RHE GVTHVLVTGGAGY
Sbjct: 22 MDFGDTRRKPNFAGKIAVAAALTVMCILVLKQSPGFGGTSVFSRHETGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHA LRLL D+YRVTIVDNLSRGNMGAV+ LQ LFP+PG+LQFIY DLGDAKAVNK+F
Sbjct: 82 IGSHATLRLLTDNYRVTIVDNLSRGNMGAVRALQRLFPEPGRLQFIYTDLGDAKAVNKMF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGEST EPLRYYHNITSNTL +LEAMAAH VKTLIYSSTCATYG
Sbjct: 142 SENAFDAVMHFAAVAYVGESTQEPLRYYHNITSNTLTVLEAMAAHNVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPI E+TPQ PINPYGKAKKMSEDII+DFSK +NMAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPDTMPIVETTPQIPINPYGKAKKMSEDIILDFSKKSNMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAA GIIPGLK+RGTDY TADGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAASGIIPGLKVRGTDYPTADGTCVRDYIDVTDLVDAHVKALG 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A+P KVGIYNVGTGKGRSVKEFVEACKKATGV IKV+YL RRPGDYAEVYS+P KIRDE
Sbjct: 322 KAEPNKVGIYNVGTGKGRSVKEFVEACKKATGVTIKVDYLDRRPGDYAEVYSNPPKIRDE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTA+ TDL+ SL AW+WQK H GYGS
Sbjct: 382 LNWTAQHTDLRESLATAWKWQKAHPGGYGS 411
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195590|gb|EEC78017.1| hypothetical protein OsI_17430 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/390 (81%), Positives = 342/390 (87%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
MD + RK + G+ VA LT + I + SP ST F RHE GVTHVLVTGGAGY
Sbjct: 1 MDFGDSRRKPSVVGKFTVAVALTVMCIIVLKQSPGFTSTSVFSRHEIGVTHVLVTGGAGY 60
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHA LRLL+D+YRVTIVDNLSRGNMGAV+VLQ LFP+PG+LQFIYADLGDAKAV+KIF
Sbjct: 61 IGSHATLRLLRDNYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYADLGDAKAVDKIF 120
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTL +LEAMAAH VKTLIYSSTCATYG
Sbjct: 121 SENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAHNVKTLIYSSTCATYG 180
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE+TPQ PINPYGKAKKM+EDII+DFSK + MAVMILRYFNVIGSDPEGRLGE
Sbjct: 181 EPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPEGRLGE 240
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAA GIIPGLK+RGTDY TADGTC+RDYIDVTDLVDAHV AL
Sbjct: 241 APRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALD 300
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A+PGKVGIYNVGTG GRSVKEFVEACK ATG +IKV +L+RRPGDYAEVYSDPSKI DE
Sbjct: 301 KAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDE 360
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTAR+TDL+ SL AW+WQK H NGYGS
Sbjct: 361 LNWTARYTDLRESLSTAWKWQKAHPNGYGS 390
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578061|ref|XP_002529901.1| UDP-glucose 4-epimerase, putative [Ricinus communis] gi|223530628|gb|EEF32504.1| UDP-glucose 4-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/390 (80%), Positives = 346/390 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D RK N G+I++A+ LTA+ I M SP N+ F HE GV HVLVTGGAGY
Sbjct: 22 LDYADPKRKSNVVGKIILAAALTALCIIMLKQSPTFNTPSPFSLHEDGVVHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHA+LRLLKD YRVTIVDNLSRGN+GAVKVLQELFP+PG+LQFIYADLG++K+VNKIF
Sbjct: 82 IGSHASLRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPEPGRLQFIYADLGNSKSVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGEST++PL+YYHNITSNTLV+LE+MAAH VKTLIYSSTCATYG
Sbjct: 142 SENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVLESMAAHDVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP+KMPITE T Q PINPYGKAKKM+EDII+DFSK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPEKMPITEDTAQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARGII GLK++GTDY T DGTC+RDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALE 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A PGKVGIYNVGTGKGRSV EFVEACKKATGV+IKV+YL RRPGDYAEVYSDP+KIR E
Sbjct: 322 KAMPGKVGIYNVGTGKGRSVNEFVEACKKATGVDIKVDYLPRRPGDYAEVYSDPTKIRVE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTA+ TDLQ SLQ+AWRWQK H NGYGS
Sbjct: 382 LNWTAQHTDLQESLQVAWRWQKAHRNGYGS 411
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24417398|gb|AAN60309.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/389 (80%), Positives = 343/389 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D +K N+ G+IL+ + LTA+ IFM SP N+ F RHEPGVTHVLVTGGAGY
Sbjct: 22 LDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPEPGRLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
ENAFDAVMHFAA AYVGEST PL+YYHNITSNTLV+LE MAAH VKTLIYSSTCATYG
Sbjct: 142 TENAFDAVMHFAAGAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE TPQ PINPYGKAKKM+EDII+DFSK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARGI+PGL+I+GTDY TADGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQ 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP KVGIYNVGTGKG SVKEFVEACKKATGV IK++YL RR GDYAEVYSDPSKIR E
Sbjct: 322 KAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYG 389
LNWTA+ T+L+ SL+ AWRWQK H NGYG
Sbjct: 382 LNWTAKHTNLKESLETAWRWQKLHRNGYG 410
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| TAIR|locus:2204639 | 419 | MUR4 "MURUS 4" [Arabidopsis th | 0.989 | 0.928 | 0.809 | 3.4e-171 | |
| TAIR|locus:2163401 | 436 | DUR "DEFECTIVE UGE IN ROOT" [A | 0.992 | 0.894 | 0.774 | 3.1e-163 | |
| TAIR|locus:2014235 | 348 | RHD1 "ROOT HAIR DEFECTIVE 1" [ | 0.867 | 0.979 | 0.421 | 8.9e-70 | |
| TAIR|locus:2123466 | 351 | UGE5 "UDP-D-glucose/UDP-D-gala | 0.854 | 0.957 | 0.415 | 2.2e-66 | |
| TIGR_CMR|CHY_0545 | 327 | CHY_0545 "UDP-glucose 4-epimer | 0.824 | 0.990 | 0.427 | 3.6e-66 | |
| TAIR|locus:2138121 | 350 | UGE2 "UDP-D-glucose/UDP-D-gala | 0.860 | 0.965 | 0.413 | 8.5e-65 | |
| TIGR_CMR|BA_5700 | 338 | BA_5700 "UDP-glucose 4-epimera | 0.842 | 0.979 | 0.410 | 2e-63 | |
| DICTYBASE|DDB_G0275295 | 344 | galE "UDP-glucose 4-epimerase" | 0.854 | 0.976 | 0.406 | 1.4e-62 | |
| TIGR_CMR|CJE_1273 | 328 | CJE_1273 "UDP-glucose 4-epimer | 0.821 | 0.984 | 0.409 | 2.7e-61 | |
| UNIPROTKB|Q9KLH0 | 338 | VC_A0774 "UDP-glucose 4-epimer | 0.839 | 0.976 | 0.4 | 3.4e-61 |
| TAIR|locus:2204639 MUR4 "MURUS 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1664 (590.8 bits), Expect = 3.4e-171, P = 3.4e-171
Identities = 315/389 (80%), Positives = 344/389 (88%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
+D +K N+ G+IL+ + LTA+ IFM SP N+ F RHEPGVTHVLVTGGAGY
Sbjct: 22 LDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGY 81
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLLK+SYRVTIVDNLSRGN+ AV++LQELFP+PG+LQFIYADLGDAKAVNKIF
Sbjct: 82 IGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPEPGRLQFIYADLGDAKAVNKIF 141
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
ENAFDAVMHFAAVAYVGEST PL+YYHNITSNTLV+LE MAAH VKTLIYSSTCATYG
Sbjct: 142 TENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYG 201
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EPD MPITE TPQ PINPYGKAKKM+EDII+DFSK ++MAVMILRYFNVIGSDPEGRLGE
Sbjct: 202 EPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGE 261
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELREHGRISGACFDAARGI+PGL+I+GTDY TADGTCVRDYIDVTDLVDAHV AL
Sbjct: 262 APRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQ 321
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
AKP KVGIYNVGTGKG SVKEFVEACKKATGV IK++YL RR GDYAEVYSDPSKIR E
Sbjct: 322 KAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKE 381
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYG 389
LNWTA+ T+L+ SL+ AWRWQK H NGYG
Sbjct: 382 LNWTAKHTNLKESLETAWRWQKLHRNGYG 410
|
|
| TAIR|locus:2163401 DUR "DEFECTIVE UGE IN ROOT" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1589 (564.4 bits), Expect = 3.1e-163, P = 3.1e-163
Identities = 302/390 (77%), Positives = 336/390 (86%)
Query: 1 MDIVSANRKRNFAGRILVASVLTAVFIFMFSLSPDSNSTKAFPRHEPGVTHVLVTGGAGY 60
MD + K N G++L+ + L + I + S S S AF + E GVTHVLVTGGAGY
Sbjct: 46 MDCLEPKTKNNLTGKLLLVASLLILAIIVISQSSSFTSPSAFSQREEGVTHVLVTGGAGY 105
Query: 61 IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120
IGSHAALRLL+DSYRVTIVDNLSRGN+GAVK LQ+LFPQ G+LQFIYADLGD AV KIF
Sbjct: 106 IGSHAALRLLRDSYRVTIVDNLSRGNLGAVKTLQQLFPQTGRLQFIYADLGDPLAVEKIF 165
Query: 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180
+ENAFDAVMHFAAVAYVGESTL PL+YYHNITSNTL +LEAMA HKVK LIYSSTCATYG
Sbjct: 166 SENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYG 225
Query: 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGE 240
EP+KMPITE TPQ PINPYGKAKKM+ED+I+DFSK ++MAVMILRYFNVIGSDP GRLGE
Sbjct: 226 EPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGE 285
Query: 241 APHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA 300
AP PELRE GRISGACFDAARG IPGL+++GTDY T+DGTC+RDYIDVTDLVDAHV AL
Sbjct: 286 APRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALE 345
Query: 301 NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360
A+P KVGIYNVGTGKGRSVKEFVEACKKATGV IKV++L RRPGDYAEVYSDP+KI +
Sbjct: 346 KAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKD 405
Query: 361 LNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
LNWTARFT+LQ SLQ+AWRWQK H +GY S
Sbjct: 406 LNWTARFTNLQDSLQVAWRWQKIHPHGYNS 435
|
|
| TAIR|locus:2014235 RHD1 "ROOT HAIR DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 147/349 (42%), Positives = 205/349 (58%)
Query: 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY- 107
V ++LVTGGAGYIGSH L+LL Y ++DNL ++ +++ +++L GQ ++
Sbjct: 2 VGNILVTGGAGYIGSHTVLQLLLGGYNTVVIDNLDNSSLVSIQRVKDLAGDHGQNLTVHQ 61
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
DL D A+ K+F+E FDAVMHFA + VGES +PL YY+N T+ +LE MAAH
Sbjct: 62 VDLRDKPALEKVFSETKFDAVMHFAGLKAVGESVAKPLLYYNNNLIATITLLEVMAAHGC 121
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSK-TTNMAVMILRY 226
K L++SS+ YG P ++P TE +P ++PYG+ K EDI D + +++LRY
Sbjct: 122 KKLVFSSSATVYGWPKEVPCTEESPLSGMSPYGRTKLFIEDICRDVQRGDPEWRIIMLRY 181
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
FN +G+ P GR+GE P + G +P LKI GTDY T DGT VRDYI
Sbjct: 182 FNPVGAHPSGRIGEDP---CGTPNNLMPYVQQVVVGRLPNLKIYGTDYTTKDGTGVRDYI 238
Query: 287 DVTDLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D H+ AL ++G +YN+GTGKG +V E V+A +KA+G+ I + + RRP
Sbjct: 239 HVVDLADGHICALQKLDDTEIGCEVYNLGTGKGTTVLEMVDAFEKASGMKIPLVKVGRRP 298
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSRNN 393
GD VY+ K ELNW A F ++ + W W + GYGS N
Sbjct: 299 GDAETVYASTEKAERELNWKANF-GIEEMCRDQWNWASNNPFGYGSSPN 346
|
|
| TAIR|locus:2123466 UGE5 "UDP-D-glucose/UDP-D-galactose 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 143/344 (41%), Positives = 198/344 (57%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQ-LQFIYAD 109
+VLV+GGAGYIGSH L+LL Y V +VDNL + +++ +++L + G+ L F D
Sbjct: 5 NVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQVD 64
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L D A+ KIF+E FDAV+HFA + VGES +PL YY+N T+ +LE MA H K
Sbjct: 65 LRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKN 124
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID-FSKTTNMAVMILRYFN 228
L++SS+ YG P ++P TE P +NPYG+ K E+I D + +++LRYFN
Sbjct: 125 LVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFN 184
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
+G+ P G +GE P + A G P L + G DYNT DGT VRDYI V
Sbjct: 185 PVGAHPSGDIGEDPRGI---PNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHV 241
Query: 289 TDLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGD 346
DL D H+ AL + K+G +YN+GTG G SV E V+A +KA+G I + RRPGD
Sbjct: 242 IDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGD 301
Query: 347 YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
VY+ + ELNW A++ ++ + W W + GY S
Sbjct: 302 AEVVYASTERAESELNWKAKY-GIEEMCRDLWNWASNNPYGYDS 344
|
|
| TIGR_CMR|CHY_0545 CHY_0545 "UDP-glucose 4-epimerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 144/337 (42%), Positives = 197/337 (58%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAGYIGSH +L + +V +VDNLS+G+ AV +L I D G
Sbjct: 2 ILVTGGAGYIGSHIVRQLCLKNEKVLVVDNLSKGHKKAVDTRAKL---------IVGDFG 52
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + +IF + AV+H AA + VGES +P +Y+ S TL +L+ M VK ++
Sbjct: 53 DENLLLEIFKKYDIKAVIHMAAQSLVGESMSQPEKYFEENISKTLSLLKVMLKANVKKMV 112
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+SST A YGEP+K PITE PQKP N YG +K + E + + + + LRYFN G
Sbjct: 113 FSSTAAVYGEPEKWPITEDFPQKPTNVYGYSKLVIEQCLEWYRQIHGFNYVSLRYFNAAG 172
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+DP G +GE +PE H + F G L + GTDY T DGTC+RDYI V DL
Sbjct: 173 ADPSGDIGEDHNPET--H--LIPLIFKVILGEQEELTVFGTDYPTPDGTCIRDYIHVNDL 228
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVY 351
+AH+LAL + G+YN+G KG SVKE ++ ++ TGV +KV Y RRPGD A +
Sbjct: 229 AEAHILALNKLNKDESGVYNLGNQKGFSVKEIIKVAEEVTGVKVKVRYGQRRPGDPAVLV 288
Query: 352 SDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
+ KI+ ELN+T +F D++ +Q AW W K + GY
Sbjct: 289 ASSEKIQKELNFTPKFGDIKTIVQTAWEWHKNNPRGY 325
|
|
| TAIR|locus:2138121 UGE2 "UDP-D-glucose/UDP-D-galactose 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 143/346 (41%), Positives = 197/346 (56%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYADL 110
VLVTGGAGYIGSH L+LL+ Y +VDN + +++ +++L + G +L F DL
Sbjct: 5 VLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFHQVDL 64
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D A+ KIF+E FDAV+HFA + VGES +PL YY+N T+ +LE MA + K L
Sbjct: 65 RDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNL 124
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNV 229
++SS+ YG P ++P TE +P NPYG+ K E+I D ++ + +++LRYFN
Sbjct: 125 VFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNP 184
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+G+ P G +GE P L + A G P L + GTDY T DGT VRDYI V
Sbjct: 185 VGAHPSGYIGEDP---LGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVM 241
Query: 290 DLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDY 347
DL D H+ AL K+ +YN+GTG G SV E V A +KA+G I + RRPGD
Sbjct: 242 DLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGDA 301
Query: 348 AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSRNN 393
VY+ K ELNW A+ ++ + W W + GY S +N
Sbjct: 302 EVVYASTEKAERELNWKAK-NGIEEMCRDLWNWASNNPYGYNSSSN 346
|
|
| TIGR_CMR|BA_5700 BA_5700 "UDP-glucose 4-epimerase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 139/339 (41%), Positives = 198/339 (58%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGGAGYIGSH + LL ++Y++ +VDNLS ++ ++ ++E+ + Q +F ++
Sbjct: 3 ILITGGAGYIGSHTCVELLNNNYKIIVVDNLSNSSIESLNRVKEITGK--QFEFYKENVL 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +N+IF EN +AV+HFA VGEST PL YY+N + +V+ + M H VK I
Sbjct: 61 NREKMNEIFLENNIEAVIHFAGFKAVGESTTTPLAYYYNNIISAIVLCDVMQKHNVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTN-MAVMILRYFNVI 230
+SS+ YG P +PITE P NPYG+ K M E I+ D +K + ++ +LRYFN
Sbjct: 121 FSSSATVYGIPKTLPITEEFPLSVTNPYGQTKLMIEQIMRDVAKADDEWSIALLRYFNPF 180
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G+ GR+GE P+ + A G + L I G DY T DGT VRDYI V D
Sbjct: 181 GAHQSGRIGEDPNGI---PNNLMPYVTQVAVGKLKELNIFGNDYPTKDGTGVRDYIHVVD 237
Query: 291 LVDAHVLALANAKPGK-VGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349
L HV AL K + YN+GTGKG SV E V+A +K +G I + + RRPGD A
Sbjct: 238 LAKGHVKALEKVLKTKGIEAYNLGTGKGYSVLEMVKAFEKVSGKKIPYKVIGRRPGDVAI 297
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
++D SK + EL W A + L+ +WRWQ + NGY
Sbjct: 298 CFADVSKAKRELGWEAEY-GLEEMCVDSWRWQVNNKNGY 335
|
|
| DICTYBASE|DDB_G0275295 galE "UDP-glucose 4-epimerase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 141/347 (40%), Positives = 203/347 (58%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQF 105
EP ++VTGGAGYIGSH + L++ Y IVDNLS ++ A+K ++ + + +++F
Sbjct: 2 EPIDDRIMVTGGAGYIGSHTVIELIEAGYTPVIVDNLSNSSLEAIKRVESITGK--EIEF 59
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
+ D+ + KA+++IF +V+HFA + VGES PL+YY+N + TL +L M H
Sbjct: 60 HHVDIMNEKALDEIFETGNIRSVIHFAGLKAVGESNKLPLKYYNNNIAGTLTLLNLMDKH 119
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDF-SKTTNMAVMIL 224
+VK L++SS+ YG+P +PITE P NPYG+ K E I+ D + ++L
Sbjct: 120 RVKKLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLYVEGILQDLCASDPEWNCIML 179
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
RYFN +G+ P G +GE P ++ + + A G P L I G DYNT DGT VRD
Sbjct: 180 RYFNPVGAHPSGLIGEDPK-DIPNN--LMPYVTQTAIGKRPILSIFGNDYNTPDGTGVRD 236
Query: 285 YIDVTDLVDAHVLALANAKPGKVGI--YNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR 342
+I V DL H+ AL++ K G YN+GTG+G SV E V A K+A+ I + +SR
Sbjct: 237 FIHVVDLAKGHISALSSLHSKKQGCVAYNLGTGRGYSVLEMVGALKQASHKEIPYQIVSR 296
Query: 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSL-QIAWRWQKTHINGY 388
R GD A ++DPSK EL W A T Q + + AW+WQ + NGY
Sbjct: 297 RKGDVASSFADPSKALKELGWKA--THNQDDMCRDAWKWQSLNPNGY 341
|
|
| TIGR_CMR|CJE_1273 CJE_1273 "UDP-glucose 4-epimerase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 136/332 (40%), Positives = 198/332 (59%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L++GGAGYIGSH + LK + + ++DNLS+G+ A++ LQ++ +F DL
Sbjct: 3 ILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDLQKI----RAFKFFEQDLS 58
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + V +F FDA++HFAA V ES PL+YY N T NT ++E V I
Sbjct: 59 DFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNTTNLIETCLQTGVNKFI 118
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNVI 230
+SST ATYGEP ++E++P PINPYG++K MSE+++ D S ILRYFNV
Sbjct: 119 FSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDASMANPEFKHCILRYFNVA 178
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G+ + LG+ +P+ +++ C A G L I G DY+T DGTC+RD+I V D
Sbjct: 179 GACMDYTLGQR-YPKATLLIKVAAEC---AAGKRDKLFIFGDDYDTKDGTCIRDFIHVDD 234
Query: 291 LVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEV 350
+ AH+ L + + ++NVG G G SVKE +EA KK +GV+ KVE RR GD + +
Sbjct: 235 ISSAHLATLDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFKVELAPRRAGDPSVL 294
Query: 351 YSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
SD SKIR+ +W ++ DL+ + A+ W+K
Sbjct: 295 ISDASKIRNLTSWQPKYDDLELICKSAFDWEK 326
|
|
| UNIPROTKB|Q9KLH0 VC_A0774 "UDP-glucose 4-epimerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 136/340 (40%), Positives = 195/340 (57%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADL 110
VLVTGG GYIGSH +++++ I+DNL + + ++++ +P QF+ D+
Sbjct: 3 VLVTGGMGYIGSHTCIQMIQAGMTPVILDNLYNSKVTVLDRIEKVIGVRP---QFVQGDI 59
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D + + ++ +AV+HFA + VGES +PL YY N + TLV++ AM VK+L
Sbjct: 60 RDKALLVDLMQQHNIEAVVHFAGLKAVGESVQKPLEYYDNNVNGTLVLVAAMREAGVKSL 119
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
++SS+ YGEP +PITES P K NPYG++K M E+ + DF K + ++ +LRYFN
Sbjct: 120 VFSSSATVYGEPTSVPITESFPTKAANPYGRSKLMVEECLTDFQKANPDWSITLLRYFNP 179
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+GS P G LGE P + A G L + G+DY T DGT VRDYI V
Sbjct: 180 VGSHPSGELGEDPQGI---PNNLMPFVTQVAVGRREYLSVFGSDYPTKDGTGVRDYIHVM 236
Query: 290 DLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYA 348
DL D H+ AL + IYN+GTGKG SV + V+A + A+G + + + RRPGD A
Sbjct: 237 DLADGHIAALKKVGTCAGLHIYNLGTGKGYSVLDVVKAFETASGRTVPYKLVDRRPGDIA 296
Query: 349 EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
E ++DP+K +L W A +L Q AW WQ + GY
Sbjct: 297 EYWADPTKAAQDLGWKAT-RNLHTMAQDAWCWQSNNPQGY 335
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9W0P5 | GALE_DROME | 5, ., 1, ., 3, ., 2 | 0.3988 | 0.8498 | 0.9542 | yes | no |
| Q9Y7X5 | UGE1_SCHPO | No assigned EC number | 0.375 | 0.8422 | 0.9323 | yes | no |
| P21977 | GALE_STRTR | 5, ., 1, ., 3, ., 2 | 0.3965 | 0.8295 | 0.9819 | yes | no |
| Q8H0B6 | ARAE2_ORYSJ | 5, ., 1, ., 3, ., 5 | 0.8076 | 0.9923 | 0.9974 | no | no |
| P55180 | GALE_BACSU | 5, ., 1, ., 3, ., 2 | 0.4227 | 0.8422 | 0.9764 | yes | no |
| Q9F7D4 | GALE_YERPE | 5, ., 1, ., 3, ., 2 | 0.3988 | 0.8320 | 0.9674 | yes | no |
| Q57301 | GALE_YEREN | 5, ., 1, ., 3, ., 2 | 0.3893 | 0.8396 | 0.9821 | yes | no |
| P56997 | GALE_NEIMA | 5, ., 1, ., 3, ., 2 | 0.3819 | 0.8498 | 0.9852 | yes | no |
| Q8H0B2 | ARAE3_ORYSJ | 5, ., 1, ., 3, ., 5 | 0.8056 | 0.9923 | 0.9605 | yes | no |
| P22715 | GALE_SALTY | 5, ., 1, ., 3, ., 2 | 0.4035 | 0.8371 | 0.9733 | yes | no |
| Q9FI17 | ARAE4_ARATH | 5, ., 1, ., 3, ., 5 | 0.7743 | 0.9923 | 0.8944 | no | no |
| Q5R8D0 | GALE_PONAB | 5, ., 1, ., 3, ., 2 | 0.3983 | 0.8371 | 0.9454 | yes | no |
| Q9KDV3 | GALE_BACHD | 5, ., 1, ., 3, ., 2 | 0.4035 | 0.8320 | 0.9790 | yes | no |
| Q9CNY5 | GALE_PASMU | 5, ., 1, ., 3, ., 2 | 0.4023 | 0.8346 | 0.9704 | yes | no |
| Q05026 | GALE_NEIGO | 5, ., 1, ., 3, ., 2 | 0.3654 | 0.8422 | 0.9792 | yes | no |
| O64749 | ARAE2_ARATH | 5, ., 1, ., 3, ., 5 | 0.7923 | 0.9923 | 0.9352 | no | no |
| Q7WTB1 | GALE_LACHE | 5, ., 1, ., 3, ., 2 | 0.4076 | 0.8320 | 0.9909 | yes | no |
| Q8R059 | GALE_MOUSE | 5, ., 1, ., 3, ., 2 | 0.3977 | 0.8422 | 0.9538 | yes | no |
| P56985 | GALE_NEIMB | 5, ., 1, ., 3, ., 2 | 0.3852 | 0.8422 | 0.9764 | yes | no |
| O84903 | GALE_LACCA | 5, ., 1, ., 3, ., 2 | 0.3888 | 0.8346 | 0.9909 | yes | no |
| P24325 | GALE_HAEIN | 5, ., 1, ., 3, ., 2 | 0.3859 | 0.8371 | 0.9733 | yes | no |
| P35673 | GALE_ERWAM | 5, ., 1, ., 3, ., 2 | 0.3771 | 0.8320 | 0.9703 | yes | no |
| Q8H930 | ARAE1_ORYSJ | 5, ., 1, ., 3, ., 5 | 0.7933 | 0.9898 | 0.9239 | no | no |
| Q553X7 | GALE_DICDI | 5, ., 1, ., 3, ., 2 | 0.4017 | 0.8575 | 0.9796 | yes | no |
| Q14376 | GALE_HUMAN | 5, ., 1, ., 3, ., 2 | 0.3983 | 0.8371 | 0.9454 | yes | no |
| Q9SUN3 | ARAE3_ARATH | 5, ., 1, ., 3, ., 5 | 0.7948 | 0.9923 | 0.9489 | no | no |
| Q9SA77 | ARAE1_ARATH | 5, ., 1, ., 3, ., 5 | 0.8097 | 0.9898 | 0.9284 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.1.3 | 0.983 |
| 3rd Layer | 5.1.3.5 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 393 | |||
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-162 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 1e-147 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 1e-140 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-112 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 3e-84 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 7e-70 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-56 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-55 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 6e-48 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 4e-45 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 4e-45 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-41 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 1e-41 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 1e-39 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 2e-34 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 8e-33 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 8e-32 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 3e-31 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 1e-30 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 1e-29 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 2e-28 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 7e-28 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 8e-25 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 1e-24 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 5e-24 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 5e-20 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 1e-19 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 3e-19 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 2e-18 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 2e-18 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-18 | |
| pfam13950 | 62 | pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase | 5e-18 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 1e-17 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 1e-16 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 3e-16 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 4e-16 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 6e-15 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 9e-15 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 2e-14 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 9e-14 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 3e-13 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 2e-12 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 2e-12 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 2e-12 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 3e-12 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 6e-12 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 2e-11 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 2e-10 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 5e-10 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 3e-09 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 3e-09 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 4e-09 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 3e-08 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 6e-08 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 6e-08 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 3e-07 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 3e-07 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 5e-07 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 6e-07 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 6e-07 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 7e-07 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 1e-06 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 1e-06 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 1e-06 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 1e-06 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 1e-06 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-06 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 2e-06 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 2e-06 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 3e-06 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-06 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 3e-06 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-06 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 5e-06 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 1e-05 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 6e-05 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 1e-04 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 2e-04 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 2e-04 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 2e-04 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 4e-04 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 4e-04 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 5e-04 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 6e-04 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 7e-04 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 9e-04 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 9e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.001 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 0.001 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 0.001 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 0.001 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.001 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 0.001 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 0.002 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 0.002 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 0.002 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 0.002 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.003 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 0.003 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 0.003 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 0.003 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 0.004 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 0.004 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 458 bits (1181), Expect = e-162
Identities = 156/333 (46%), Positives = 200/333 (60%), Gaps = 11/333 (3%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VLVTGGAGYIGSH + LL+ Y V ++DNLS G+ A+ ++++ + F D+
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREALPRIEKIRIE-----FYEGDI 55
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D A++K+FAE+ DAV+HFAA+ VGES +PL+YY N TL +LEAM AH VK
Sbjct: 56 RDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVKNF 115
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
++SS+ A YGEP+ +PITE P P NPYG+ K M E I+ D +K + +ILRYFN
Sbjct: 116 VFSSSAAVYGEPETVPITEEAPLNPTNPYGRTKLMVEQILRDLAKAPGLNYVILRYFNPA 175
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G+ P G +GE P + A G L I G DY T DGTCVRDYI V D
Sbjct: 176 GAHPSGLIGEDPQIP----NNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYIHVVD 231
Query: 291 LVDAHVLAL-ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349
L DAHVLAL G IYN+GTG+G SV E VEA +K +G I E RR GD A
Sbjct: 232 LADAHVLALEKLENGGGSEIYNLGTGRGYSVLEVVEAFEKVSGKPIPYEIAPRRAGDPAS 291
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
+ +DPSK R+EL W + DL+ + AW WQ
Sbjct: 292 LVADPSKAREELGWKPK-RDLEDMCEDAWNWQS 323
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 421 bits (1084), Expect = e-147
Identities = 161/341 (47%), Positives = 204/341 (59%), Gaps = 18/341 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGAGYIGSH +LLK + V ++DNLS G+ A+ LQ +F DL
Sbjct: 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ--------FKFYEGDLL 54
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + +F EN DAV+HFAA VGES PL+YY N TL ++EAM VK I
Sbjct: 55 DRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI 114
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+SST A YGEP PI+E++P PINPYG++K MSE+I+ D +K V+ILRYFNV G
Sbjct: 115 FSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAG 174
Query: 232 SDPEGRLGEAPHPE--LREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+ P+G LG+ L I A +AA G L I G DY+T DGTC+RDYI V
Sbjct: 175 ACPDGTLGQRYPGATLL-----IPVAA-EAALGKRDKLFIFGDDYDTKDGTCIRDYIHVD 228
Query: 290 DLVDAHVLAL-ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYA 348
DL DAHVLAL + G I+N+G+G G SV E +EA KK TG +I VE RR GD A
Sbjct: 229 DLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPA 288
Query: 349 EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK-THINGY 388
+ +D SK R L W + DL+ ++ AW W + H +GY
Sbjct: 289 ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQRHGDGY 329
|
Length = 329 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 402 bits (1034), Expect = e-140
Identities = 156/335 (46%), Positives = 205/335 (61%), Gaps = 10/335 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAGYIGSH +LL+ + V I+DNLS G+ A+ + + P F+ DL
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVT----FVEGDLR 57
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + ++++F E+ DAV+HFA + VGES +PL+YY N TL +LEAM VK I
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFI 117
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTN-MAVMILRYFNVI 230
+SS+ A YGEP +PI+E +P PINPYG++K MSE I+ D K + +ILRYFNV
Sbjct: 118 FSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFNVA 177
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G+ P G +GE P I AC A G L I GTDY T DGTCVRDYI V D
Sbjct: 178 GAHPSGDIGEDPPGITH---LIPYAC-QVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMD 233
Query: 291 LVDAHVLAL-ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349
L DAH+ AL G +YN+G G+G SV E +EA KK +G + VE RRPGD A
Sbjct: 234 LADAHLAALEYLLNGGGSHVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELAPRRPGDPAS 293
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
+ +D SKIR EL W ++TDL+ ++ AWRW+ +
Sbjct: 294 LVADASKIRRELGWQPKYTDLEEIIKDAWRWESRN 328
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 330 bits (849), Expect = e-112
Identities = 147/358 (41%), Positives = 196/358 (54%), Gaps = 37/358 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQ-LQFIYADL 110
+LVTGGAGYIGSH L+LL Y+V ++DNL + A++ ++EL G L F DL
Sbjct: 8 ILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDL 67
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D +A+ K+FA FDAV+HFA + VGES +PL YY N T+ +LE MA H K L
Sbjct: 68 RDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKL 127
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
++SS+ YG+P+++P TE P NPYG+ K E+I D + +++LRYFN
Sbjct: 128 VFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNP 187
Query: 230 IGSDPEGRLGEAPH-------PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
+G+ P GR+GE P P +++ A G P L + G DY T DGT V
Sbjct: 188 VGAHPSGRIGEDPKGIPNNLMPYVQQ----------VAVGRRPELTVFGNDYPTKDGTGV 237
Query: 283 RDYIDVTDLVDAHVLAL----ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE 338
RDYI V DL D H+ AL + G YN+GTGKG SV E V A +KA+G I ++
Sbjct: 238 RDYIHVMDLADGHIAALRKLFTDPDIGCE-AYNLGTGKGTSVLEMVAAFEKASGKKIPLK 296
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFT------DLQGSLQIAWRWQKTHINGYGS 390
RRPGD EVY+ K EL W A++ D W W + GYGS
Sbjct: 297 LAPRRPGDAEEVYASTEKAEKELGWKAKYGIDEMCRDQ-------WNWASKNPYGYGS 347
|
Length = 352 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 3e-84
Identities = 140/348 (40%), Positives = 187/348 (53%), Gaps = 25/348 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK LI
Sbjct: 61 NEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS+ YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH-------PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
+G+ P G +GE P P + + A G L I G DY T DGT V
Sbjct: 181 VGAHPSGDMGEDPQGIPNNLMPYIAQ----------VAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 283 RDYIDVTDLVDAHVLALAN--AKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL 340
RDYI V DL D HV A+ KPG V IYN+G G G SV + V A KA G + +
Sbjct: 231 RDYIHVMDLADGHVAAMEKLANKPG-VHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFA 289
Query: 341 SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
RR GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
|
Length = 338 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 7e-70
Identities = 106/337 (31%), Positives = 155/337 (45%), Gaps = 41/337 (12%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYAD 109
VLVTGGAG+IGSH RLL+ + V ++DNLS G +E P+ ++FI D
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGK-------KENLPEVKPNVKFIEGD 53
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D + V F D V H AA A V S +P++ + TL +LEA VK
Sbjct: 54 IRDDELVEFAFEG--VDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKR 111
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
+Y+S+ + YG+P +P E P P++PY +K E F++ + + LRYFNV
Sbjct: 112 FVYASSSSVYGDPPYLPKDEDHPPNPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 230 IG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIP---GLKIRGTD-YNTADGTCVR 283
G DP G +IP ++G DG R
Sbjct: 172 YGPRQDPNG----------------------GYAAVIPIFIERALKGEPPTIYGDGEQTR 209
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR 343
D+ V D+V+A++LA G +YN+GTGK SV E E ++ G ++ Y R
Sbjct: 210 DFTYVEDVVEANLLAATAGAGG--EVYNIGTGKRTSVNELAELIREILGKELEPVYAPPR 267
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
PGD +D SK + L W + + L++ W
Sbjct: 268 PGDVRHSLADISKAKKLLGWEPK-VSFEEGLRLTVEW 303
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-56
Identities = 103/341 (30%), Positives = 155/341 (45%), Gaps = 37/341 (10%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+LVTGGAG+IGSH RLL + V +D L G P ++F+ DL
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGL----------DPLLSGVEFVVLDL 51
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTL-EPLRYYHNITSNTLVILEAMAAHKVKT 169
D V+++ DAV+H AA + V +S +P + TL +LEA A VK
Sbjct: 52 TDRDLVDELAKG-VPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKR 110
Query: 170 LIYSSTCAT-YGEPDKMPITES-TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
+++S+ + YG+P +PI E P +P+NPYG +K +E ++ +++ + V+ILR F
Sbjct: 111 FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPF 170
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
NV G P + + A P + I G DG+ RD++
Sbjct: 171 NVYG----------PGDKPDLSSGVVSAFIRQLLKGEPIIVIGG------DGSQTRDFVY 214
Query: 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKG-RSVKEFVEACKKATG---VNIKVEYLSRR 343
V D+ DA +LAL N G++N+G+G +V+E EA +A G I L RR
Sbjct: 215 VDDVADALLLALEN---PDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRR 271
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
D SK R L W + + +G K
Sbjct: 272 GDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 2e-55
Identities = 85/262 (32%), Positives = 125/262 (47%), Gaps = 29/262 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGG G+IGSH RLL++ Y V L R + G+++F DL
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVI---VLGRRR-------RSESLNTGRIRFHEGDLT 50
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D A+ ++ AE DAV+H AA + VG S +P + TL +LEA VK +
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFV 110
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
++S+ YG+ PITE TP P++PY AK +E ++ +++ + +ILR FNV G
Sbjct: 111 FASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNVYG 170
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
P ++ R I+ G I DGT RD++ V D+
Sbjct: 171 ----------PG---NPDPFVTHVIPALIRRILEGKPI--LLLG--DGTQRRDFLYVDDV 213
Query: 292 VDAHVLALANAKPGKVGIYNVG 313
A +LAL + G IYN+G
Sbjct: 214 ARAILLALEHPDGG--EIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 6e-48
Identities = 77/263 (29%), Positives = 114/263 (43%), Gaps = 64/263 (24%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAG+IGSH RLL+ + V ++D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDR------------------------------ 30
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKTL 170
D V+H AA+ V S P + N+ TL +LEA VK
Sbjct: 31 -------------LDVVVHLAALVGVPASWDNPDEDFETNVVG-TLNLLEAARKAGVKRF 76
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+Y+S+ + YG P+ +P E TP +P++PYG +K +E ++ + ++ + V+ILR NV
Sbjct: 77 VYASSASVYGSPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANVY 136
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G P R G ++ A G L + G G RD+I V D
Sbjct: 137 G----------PGQRPRLDGVVNDFIRRALEG--KPLTVFG------GGNQTRDFIHVDD 178
Query: 291 LVDAHVLALANAKPGKVGIYNVG 313
+V A + AL N G G+YN+G
Sbjct: 179 VVRAILHALENPLEG-GGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 4e-45
Identities = 96/328 (29%), Positives = 144/328 (43%), Gaps = 38/328 (11%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+LVTGGAG+IGSH RLL++ V +VDNLS G ++ E +F+ DL
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENK----AFRFVKRDL 56
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D A+ D V H AA V +P T +LEAM A+ VK +
Sbjct: 57 LDTAD---KVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRI 113
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+++S+ YGE +P E P PI+ YG +K +E +I ++ I R+ N++
Sbjct: 114 VFASSSTVYGEAKVIPTPEDYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFANIV 173
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGII--PG-LKIRGTDYNTADGTCVRDYID 287
G HG I +D + P L++ G DG + Y+
Sbjct: 174 GPR-------------STHGVI----YDFINKLKRNPNELEVLG------DGRQRKSYLY 210
Query: 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL-SRR--P 344
V+D VDA +LA + G V I+N+G SV E E + G+ + +Y R
Sbjct: 211 VSDCVDAMLLAWEKSTEG-VNIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWK 269
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQG 372
GD + D K++ L W R+ +
Sbjct: 270 GDVPYMRLDIEKLK-ALGWKPRYNSEEA 296
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 4e-45
Identities = 107/340 (31%), Positives = 161/340 (47%), Gaps = 43/340 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQ---ELFPQPGQLQFIYA 108
+LVTG AG+IG H A RLL+ V +DNL+ + V++ + EL + G +F+
Sbjct: 3 ILVTGAAGFIGFHVAKRLLERGDEVVGIDNLN--DYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
DL D +A+ ++F ++ FDAV+H AA A V S P Y + L +LE VK
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 169 TLIYSSTCATYGEPDKMPITESTP-QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
L+Y+S+ + YG KMP +E PI+ Y KK +E + +S + LR+F
Sbjct: 121 HLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGLRFF 180
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
V G P GR P++ A F + I+ G I +N DG RD+
Sbjct: 181 TVYG--PWGR------PDM--------ALFLFTKAILEGKPID--VFN--DGNMSRDFTY 220
Query: 288 VTDLVDAHVLAL------------ANAKPGKV----GIYNVGTGKGRSVKEFVEACKKAT 331
+ D+V+ V AL P +YN+G + +F+EA +KA
Sbjct: 221 IDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKAL 280
Query: 332 GVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQ 371
G K YL + GD E Y+D SK++ L + + T L+
Sbjct: 281 GKKAKKNYLPMQKGDVPETYADISKLQRLLGYKPK-TSLE 319
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 1e-41
Identities = 95/331 (28%), Positives = 154/331 (46%), Gaps = 35/331 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+ GG G+IGSH LL++ +V + R + P G + +I D
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRV---FDR------SIPPYELPLGG-VDYIKGDYE 51
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEP-LRYYHNITSNTLVILEAMAAHKVKTL 170
+ + D V+H A+ S P L N+ T+ +LEA AA + +
Sbjct: 52 NRADLESALVG--IDTVIHLASTTNPATSNKNPILDIQTNVAP-TVQLLEACAAAGIGKI 108
Query: 171 IYSSTCAT-YGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
I++S+ T YG P+++PI+ES P PI+ YG +K E + + + +LR
Sbjct: 109 IFASSGGTVYGVPEQLPISESDPTLPISSYGISKLAIEKYLRLYQYLYGLDYTVLRI--- 165
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
S+P G P+ + G I A RG ++I G DG +RDYI +
Sbjct: 166 --SNP---YGPGQRPD-GKQGVIPIALNKILRGEP--IEIWG------DGESIRDYIYID 211
Query: 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349
DLV+A + L + ++N+G+G G S+ E + +K TG +++V Y R D +
Sbjct: 212 DLVEALMALLRSKGLE--EVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPK 269
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+ D S+ R EL W+ + L+ L+ W+W
Sbjct: 270 IVLDISRARAELGWSPK-ISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 1e-41
Identities = 104/350 (29%), Positives = 163/350 (46%), Gaps = 60/350 (17%)
Query: 50 THVLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY 107
+LVTGGAG+IGS+ LL Y++ +D L+ G ++ L+++ P + +F+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYA--GNLENLEDVSSSP-RYRFVK 57
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAA 164
D+ DA+ V+++F E DAV+HFAA ++V S +P + I +N T +LEA
Sbjct: 58 GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPF---IRTNVLGTYTLLEAARK 114
Query: 165 HKVKTLIYSSTCATYGE-PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
+ VK ++ ST YG+ D TE++P P +PY +K ++ ++ + +T + V+I
Sbjct: 115 YGVKRFVHISTDEVYGDLLDDGEFTETSPLAPTSPYSASKAAADLLVRAYHRTYGLPVVI 174
Query: 224 LRYFNVIGSDPEGRLGEAP--HPELREHGRISGACFDAARGIIP----------GLKIRG 271
R N G P PE +IP L I G
Sbjct: 175 TRCSNNYG----------PYQFPE----------------KLIPLFILNALDGKPLPIYG 208
Query: 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKAT 331
DG VRD++ V D A L L + G+ IYN+G G + E V+ +
Sbjct: 209 ------DGLNVRDWLYVEDHARAIELVLEKGRVGE--IYNIGGGNELTNLELVKLILELL 260
Query: 332 GVNIK-VEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
G + + Y+ RPG D SKIR EL W + + +G L+ RW
Sbjct: 261 GKDESLITYVKDRPGHDRRYAIDSSKIRRELGWRPKVSFEEG-LRKTVRW 309
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-39
Identities = 89/325 (27%), Positives = 140/325 (43%), Gaps = 32/325 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
L+TG G GS+ A LL+ Y V IV S N + L+ ++ Y DL
Sbjct: 2 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTD---RIDHLYINKDRITLHYGDL 58
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D+ ++ + + D + H AA ++V S +P TL +LEA+ +
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 171 IY-SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y +S+ YG+ ++P +E+TP +P +PY +K ++ I ++ + + + R FN
Sbjct: 119 FYQASSSEEYGKVQELPQSETTPFRPRSPYAVSKLYADWITRNYREAYGLFAVNGRLFNH 178
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
G R GE +I+ G+ P LK+ D RD+ D
Sbjct: 179 EGP----RRGETFVT-----RKITRQVARIKAGLQPVLKLGNLD-------AKRDWGDAR 222
Query: 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEAC------KKATGVNIKVEYLSRR 343
D V+A+ L L +P Y + TG+ SV+EFVE V I Y R
Sbjct: 223 DYVEAYWLLLQQGEPDD---YVIATGETHSVREFVELAFEESGLTGDIEVEIDPRYF--R 277
Query: 344 PGDYAEVYSDPSKIRDELNWTARFT 368
P + + DPSK R+EL W +
Sbjct: 278 PTEVDLLLGDPSKAREELGWKPEVS 302
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-34
Identities = 97/337 (28%), Positives = 142/337 (42%), Gaps = 50/337 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGS+ L + + +VDNLS G V + AD
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLK-----------IADY 50
Query: 111 GDA----KAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYY---HNITSNTLVILEAMA 163
D V K +A+ H A + T E Y +N T +L
Sbjct: 51 IDKDDFKDWVRKGDENFKIEAIFHQGACS----DTTETDGKYMMDNNYQY-TKELLHYCL 105
Query: 164 AHKVKTLIYSSTCATYG--EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
K++ IY+S+ A YG E+ +P+N YG +K + + K V
Sbjct: 106 EKKIR-FIYASSAAVYGNGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGKEVLSQV 164
Query: 222 MILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR--GTDYNTADG 279
+ LRYFNV G P GR++ F I G K++ + ADG
Sbjct: 165 VGLRYFNVYG------------PREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADG 212
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
+RD++ V D+V ++ L N P GI+NVGTG+ RS + A KA G +K+EY
Sbjct: 213 EQLRDFVYVKDVVKVNLFFLEN--PSVSGIFNVGTGRARSFNDLASATFKALGKEVKIEY 270
Query: 340 LSRRPGDYAEVY-----SDPSKIRDELNWTARFTDLQ 371
+ P D Y +D SK+R +T F L+
Sbjct: 271 ID-FPEDLRGKYQSFTEADISKLR-AAGYTKEFHSLE 305
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 8e-33
Identities = 99/335 (29%), Positives = 155/335 (46%), Gaps = 33/335 (9%)
Query: 52 VLVTGGAGYIGS---HAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
+LVTGGAG+IGS L D V ++D L+ G ++ L +L P + +F+
Sbjct: 2 ILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKLTYA--GNLENLADLEDNP-RYRFVKG 57
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+GD + V+++F E+ DAV+HFAA ++V S P + T +LEA+ + +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 169 T-LIYSSTCATYGEPDK-MPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
+ ST YG+ +K TE+TP P +PY +K S+ ++ + +T + +I R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRC 177
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
N G PE I +A G L + G DG VRD++
Sbjct: 178 SN--------NYGPYQFPE----KLIPLMITNALAGK--PLPVYG------DGQQVRDWL 217
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA-CKKATGVNIKVEYLSRRPG 345
V D A L L + G+ YN+G G R+ E VE + + ++ RPG
Sbjct: 218 YVEDHCRAIYLVLEKGRVGET--YNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPG 275
Query: 346 DYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
D SKI+ EL W ++T +G L+ +W
Sbjct: 276 HDRRYAIDASKIKRELGWAPKYTFEEG-LRKTVQW 309
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-32
Identities = 91/348 (26%), Positives = 139/348 (39%), Gaps = 46/348 (13%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+VLVTG G+IGSH RLL++ + V +D + N + FI D+
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFN----SWGLLDNAVHDRFHFISGDV 56
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
DA V + + D V H AA+ + S PL Y TL +LEA K +
Sbjct: 57 RDASEVEYLVKKC--DVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRV 114
Query: 171 IYSSTCATYGEPDKMPITESTPQKPIN----PYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
+++ST YG +PI E P IN PY +K+ ++ + + ++ + V I+R
Sbjct: 115 VHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR----GTDYNTADGTCV 282
FN G R S AR +IP + + N DG+
Sbjct: 175 FNTYG------------------PRQS------ARAVIPTIISQRAIGQRLINLGDGSPT 210
Query: 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEF-VEACKKATGVNIKVEYLS 341
RD+ V D + + +A I N G+G+ S+ VE + G + + Y
Sbjct: 211 RDFNFVKDTARG-FIDILDAIEAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDD 269
Query: 342 RRP--GDYAEVYS---DPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
R Y+EV D K + L W + L+ L+ W K
Sbjct: 270 HREYRPGYSEVERRIPDIRKAKRLLGWEPK-YSLRDGLRETIEWFKDQ 316
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-31
Identities = 101/349 (28%), Positives = 152/349 (43%), Gaps = 56/349 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYA 108
+LVTGGAG+IGS+ +L V +D L+ GN+ + ++ + +F+
Sbjct: 3 ILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE----DSPRYRFVQG 58
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAH 165
D+ D + V+++F E DAV+HFAA ++V S P + I +N T +LEA +
Sbjct: 59 DICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPF---IQTNVVGTYTLLEAARKY 115
Query: 166 KVKT-LIYSSTCATYGE--PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
K + ST YG+ D TE+TP P +PY +K S+ ++ + +T +
Sbjct: 116 WGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLPAT 175
Query: 223 ILRYFNVIGSDPEGRLGEAP--HPE-LREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279
I R N G P PE L I +A G L + G DG
Sbjct: 176 ITRCSNNYG----------PYQFPEKL-----IPLMIINALLGK--PLPVYG------DG 212
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA-C----KKATGVN 334
+RD++ V D A L L K G+ YN+G G R+ E V+ C K
Sbjct: 213 LQIRDWLYVEDHCRAIDLVLTKGKIGET--YNIGGGNERTNLEVVKTICELLGKDKPDYR 270
Query: 335 IKVEYLSRRPGD---YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+ ++ RPG YA D SKI+ EL W + L+ W
Sbjct: 271 DLITFVEDRPGHDRRYA---IDASKIKRELGWRP-QETFETGLRKTVDW 315
|
Length = 340 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-30
Identities = 83/348 (23%), Positives = 142/348 (40%), Gaps = 73/348 (20%)
Query: 52 VLVTGGAGYIGSHAALRL----LKDSYRVTIVDNLSRG--NMGAVKVLQELFPQPGQLQF 105
++VTGGAG+IGS+ L + D + +VDNL G +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITD---ILVVDNLRDGHKFLNLAD------------LV 45
Query: 106 IYADLGDAKAVNKIFAENA--FDAVMHFAAVAYVGESTLEPLRYY--HNITSNTLVILEA 161
I + ++++ +A+ H A + T E Y N + +L+
Sbjct: 46 IADYIDKEDFLDRLEKGAFGKIEAIFHQGACS----DTTETDGEYMMENNYQYSKRLLDW 101
Query: 162 MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID--FSKTTNM 219
A + IY+S+ ATYG+ + ++P+N YG +K + + + + +
Sbjct: 102 CAEKGIP-FIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSA 160
Query: 220 AVMILRYFNVIGSDPEGRLGEAPHPELREH--GRISGACFDAARGIIPGLKIR--GTDYN 275
V+ LRYFNV G RE+ G+++ F I G ++ +
Sbjct: 161 QVVGLRYFNVYGP--------------REYHKGKMASVAFHLFNQIKAGGNVKLFKSSEG 206
Query: 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI 335
DG +RD++ V D+VD ++ L N G GI+N+GTG+ RS + +A KA G +
Sbjct: 207 FKDGEQLRDFVYVKDVVDVNLWLLEN---GVSGIFNLGTGRARSFNDLADAVFKALGKDE 263
Query: 336 KVEYLS--------------------RRPGDYAEVYSDPSKIRDELNW 363
K+EY+ R G Y + ++D + W
Sbjct: 264 KIEYIPMPEALRGRYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQW 311
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 1e-29
Identities = 89/340 (26%), Positives = 139/340 (40%), Gaps = 51/340 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TGGAG IGSH LL+ ++V ++DN + G +E P L + +
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGR-------REHLPDHPNLTVVEGSIA 55
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAHKVK 168
D V+K+F + DAV+H A AY +P +Y + +N +++A VK
Sbjct: 56 DKALVDKLFGDFKPDAVVH-TAAAYK-----DPDDWYEDTLTNVVGGANVVQAAKKAGVK 109
Query: 169 TLIYSSTCATYG-EPDKMPITESTPQKPIN-PYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
LIY T YG +P + PI P+ P Y +K E + + + + + R
Sbjct: 110 RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGE----YYLELSGVDFVTFRL 165
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
NV G R P P + + CF RD++
Sbjct: 166 ANVTGP----RNVIGPLPTFYQRLKAGKKCFVT--------------------DTRRDFV 201
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI--KVEYLSRRP 344
V DL AL + G Y+ +G+ S+KE +A +A + + +VE + P
Sbjct: 202 FVKDLARVVDKALDGIRG--HGAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGP 259
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
D + DPS+ + W FT L ++ A W H
Sbjct: 260 DDVPSILLDPSRTFQDFGWKE-FTPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 94/361 (26%), Positives = 152/361 (42%), Gaps = 59/361 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR----GNMGAVKVLQELFPQPGQLQFIY 107
VL+TGGAG+IGS+ A LK + V DNL R GN+ +K +E G ++F++
Sbjct: 3 VLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANRED----GGVRFVH 58
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAA 164
D+ + + +F + D ++H AA V S P + +N TL +LEA
Sbjct: 59 GDIRNRNDLEDLFED--IDLIIHTAAQPSVTTSASSP---RLDFETNALGTLNVLEAARQ 113
Query: 165 HKVKT-LIYSSTCATYG-EPDKMP-------------------ITESTP-QKPINPYGKA 202
H I++ST YG P+ +P I+ES P + YG +
Sbjct: 114 HAPNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGAS 173
Query: 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262
K ++ + ++ + + ++ R + G G + G ++ A G
Sbjct: 174 KGAADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGT---------EDQGWVAYFLKCAVTG 224
Query: 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK- 321
L I G G VRD + DLV+ ++ N K ++N+G G+ SV
Sbjct: 225 --KPLTIFGY-----GGKQVRDVLHSADLVNLYLRQFQNPDRRKGEVFNIGGGRENSVSL 277
Query: 322 -EFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQ--IAW 378
E + C++ TG ++ RPGD SD KI+++ W D + L AW
Sbjct: 278 LELIALCEEITGRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPER-DPREILAEIYAW 336
Query: 379 R 379
Sbjct: 337 I 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-28
Identities = 90/342 (26%), Positives = 146/342 (42%), Gaps = 56/342 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGGAG++GSH RLL+D + V VDN G + ++ L P +FI D+
Sbjct: 3 ILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRK---RNIEHLIGHP-NFEFIRHDV- 57
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHN----ITSN---TLVILEAMAA 164
++ E D + H A A P+ Y +N + +N TL +L +A
Sbjct: 58 ----TEPLYLE--VDQIYHLACPA-------SPVHYQYNPIKTLKTNVLGTLNMLG-LAK 103
Query: 165 HKVKTLIYSSTCATYGEPDKMPITES-----TPQKPINPYGKAKKMSEDIIIDFSKTTNM 219
++ +ST YG+P+ P ES P P + Y + K+++E + + + + +
Sbjct: 104 RVGARVLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGV 163
Query: 220 AVMILRYFNVIGSDPEGRLGEAPHPELRE-HGRISGACFDAARGIIPGLKIRGTDYN-TA 277
V I R FN G P + GR+ + I+ L RG
Sbjct: 164 DVRIARIFNTYG------------PRMHPNDGRV------VSNFIVQAL--RGEPITVYG 203
Query: 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV 337
DGT R + V+DLV+ ++ L N G N+G + ++ E E KK TG ++
Sbjct: 204 DGTQTRSFQYVSDLVEG-LIRLMN-SDYFGGPVNLGNPEEFTILELAELVKKLTGSKSEI 261
Query: 338 EYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQG-SLQIAW 378
+L D D SK ++ L W + +G I +
Sbjct: 262 VFLPLPEDDPKRRRPDISKAKELLGWEPKVPLEEGLRRTIEY 303
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 81/343 (23%), Positives = 135/343 (39%), Gaps = 38/343 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG G+IGSH A RL + + V D S +M E F DL
Sbjct: 3 ALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDE---------FHLVDLR 53
Query: 112 DAKAVNKIFAENAFDAVMHFAA-VAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ + N + A D V H AA + +G +N T +LEA + V+
Sbjct: 54 EME--NCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERF 111
Query: 171 IYSSTCATYG-----EPDKMPITES--TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
+++S+ Y E + + E P +P + YG K +E + +++ + I
Sbjct: 112 LFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRI 171
Query: 224 LRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG-LKIRGTDYNTADGTCV 282
+R+ N+ G P G RE + C A +I G DG
Sbjct: 172 VRFHNIYG--PRGTW----DGG-REKA-PAAMCRKVATAKDGDRFEIWG------DGLQT 217
Query: 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR 342
R + + D V+ + + V N+G+ + S+ E E +G +++ + +
Sbjct: 218 RSFTYIDDCVEGLRRLMESDFGEPV---NLGSDEMVSMNELAEMVLSFSGKPLEIIHHTP 274
Query: 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
P SD + +++EL W T L+ L+I + W K I
Sbjct: 275 GPQGVRGRNSDNTLLKEELGWEPN-TPLEEGLRITYFWIKEQI 316
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 94/350 (26%), Positives = 157/350 (44%), Gaps = 43/350 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPG--QLQFIY 107
+L+TG AG+I SH A RL+++ Y++ ++D L L+ L P +F+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDY-----CSNLKNLNPSKSSPNFKFVK 63
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM-AAHK 166
D+ A VN + D +MHFAA +V S + N T V+LEA +
Sbjct: 64 GDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ 123
Query: 167 VKTLIYSSTCATYGEPDKMPIT---ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
++ I+ ST YGE D+ E++ P NPY K +E +++ + ++ + V+
Sbjct: 124 IRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 183
Query: 224 LRYFNVIGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281
R NV G P+ PE I A +G L I G DG+
Sbjct: 184 TRGNNVYG----------PNQFPE----KLIPKFILLAMQGKP--LPIHG------DGSN 221
Query: 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--VEY 339
VR Y+ D+ +A + L + G V YN+GT K R V + + K G++ + +++
Sbjct: 222 VRSYLYCEDVAEAFEVVLHKGEVGHV--YNIGTKKERRVIDVAKDICKLFGLDPEKSIKF 279
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYG 389
+ RP + + D K++ L W R T + L+ W ++ + +G
Sbjct: 280 VENRPFNDQRYFLDDQKLKK-LGWQER-TSWEEGLKKTMEWYTSNPDWWG 327
|
Length = 668 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 87/339 (25%), Positives = 146/339 (43%), Gaps = 64/339 (18%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMG-----AVKVLQELFPQPGQLQF 105
VLVTG G+IGSH L++ Y V V S + G +V ++ +
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDKI-------EV 53
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAA 164
+ D+ D +V K D V H AA+ + S + P Y N+T TL +L+A
Sbjct: 54 VTGDIRDPDSVRKAMKGC--DVVFHLAALIAIPYSYIAPDSYVDTNVTG-TLNVLQAARD 110
Query: 165 HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
V+ ++++ST YG +PI E P + +PY +K ++ + + F ++ N V I+
Sbjct: 111 LGVEKVVHTSTSEVYGTAQYVPIDEKHPLQGQSPYSASKIGADQLALSFYRSFNTPVTII 170
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL---------KIRGTDYN 275
R FN G R S AR +IP + +I+
Sbjct: 171 RPFNTYGP------------------RQS------ARAVIPTIITQIASGKRRIK----- 201
Query: 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVG-IYNVGTGKGRSVKEFVEACKKATGVN 334
+ RD+ VTD V + A+A + VG + N+G+ S+ + V+ + G
Sbjct: 202 LGSLSPTRDFNYVTDTVRGFI-AIAES-DKTVGEVINIGSNFEISIGDTVKLIAEIMGSE 259
Query: 335 IKVEYLSR--RPGDYAEV---YSDPSKIRDELNWTARFT 368
+++E RP +EV + D SKI++ W +++
Sbjct: 260 VEIETDEERLRPEK-SEVERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 5e-20
Identities = 86/346 (24%), Positives = 129/346 (37%), Gaps = 64/346 (18%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VLVTG G+IG +LL V I V N V A+L
Sbjct: 2 VLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVL----------------AEL 45
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYV-GESTLEPLRYYHNI-TSNTLVILEAMAAHKVK 168
D + DAV+H AA +V + +PL Y + T T + A A VK
Sbjct: 46 PDIDSFT--DLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVK 103
Query: 169 TLIYSSTCATYGEP-DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
++ S+ GE P E+ P P + YG++K +E +++ + M V+ILR
Sbjct: 104 RFVFLSSVKVNGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDGMEVVILRPP 163
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI-RGTDYNTADGTCVRDYI 286
V G G R+ R I GL + G N R +
Sbjct: 164 MVYGPGVRGNF-----------ARLM-------RLIDRGLPLPPGAVKNR------RSLV 199
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN--------IKVE 338
+ +LVDA L ++ K G + V G S E V+ ++A G +
Sbjct: 200 SLDNLVDAIYLCISLPKAAN-GTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLR 258
Query: 339 YLSRRPGDYAEVYS-------DPSKIRDELNWTARFTDLQGSLQIA 377
+ ++ G A + DP K ++EL W + L+ LQ
Sbjct: 259 FAAKLLGKRAVIQRLFGSLQYDPEKTQNELGWRPPIS-LEEGLQET 303
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-19
Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 64/301 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+ GG +IG LL + VT+ +RG P ++ I D
Sbjct: 3 ILIIGGTRFIGKALVEELLAAGHDVTV---FNRGRTKP--------DLPEGVEHIVGDRN 51
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D A+ ++ FD V+ +AY E L+A +VK I
Sbjct: 52 DRDALEELLGGEDFDVVVDT--IAYTPRQV-ERA-------------LDAFK-GRVKQYI 94
Query: 172 YSSTCATYGEPDKMPITESTP--------QKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
+ S+ + Y +P + ITESTP YG+ K+ +ED++I+ + I
Sbjct: 95 FISSASVYLKPGR-VITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAA---AFPYTI 150
Query: 224 LRYFNVIGS-DPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
+R + G D GRL L I ++PG DG +
Sbjct: 151 VRPPYIYGPGDYTGRLAYFFD-RLARGRPI----------LVPG-----------DGHSL 188
Query: 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR 342
+I V DL A + A N K GI+N+ + + E +EAC KA G ++ ++
Sbjct: 189 VQFIHVKDLARALLGAAGNPKAIG-GIFNITGDEAVTWDELLEACAKALGKEAEIVHVEE 247
Query: 343 R 343
Sbjct: 248 D 248
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-19
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQEL---FPQPGQLQFIYA 108
+LVTGGAG IGS ++LK + IV R ++++EL FP +L+FI
Sbjct: 5 ILVTGGAGSIGSELVRQILKFGPKKLIV--FDRDENKLHELVRELRSRFPHD-KLRFIIG 61
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ D + + + F E D V H AA+ +V P T +++A + V+
Sbjct: 62 DVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENGVE 121
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFS-KTTNMAVMILRYF 227
+ ST DK P+N G K+++E +++ + +++ +R+
Sbjct: 122 KFVCIST-------DK-------AVNPVNVMGATKRVAEKLLLAKNEYSSSTKFSTVRFG 167
Query: 228 NVIGSD 233
NV+GS
Sbjct: 168 NVLGSR 173
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 88/341 (25%), Positives = 141/341 (41%), Gaps = 45/341 (13%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
L+TG G GS+ A LL+ Y V I S N + + ++ +L Y DL
Sbjct: 6 LITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLT 65
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM-AAHKVKTL 170
D+ + +I E D + + AA ++VG S +P TL +LEA+ + KT
Sbjct: 66 DSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTR 125
Query: 171 IYS-STCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y ST YG ++P E+TP P +PY AK + I +++ ++ + FN
Sbjct: 126 FYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFN- 184
Query: 230 IGSDPEGRLGEAP-HPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
E+P E +I+ A G+ L + D RD+
Sbjct: 185 ---------HESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLD-------AKRDWGHA 228
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK------------ 336
D V+A L L +P Y + TG+ SV+EFVE + G++++
Sbjct: 229 KDYVEAMWLMLQQEEPDD---YVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVD 285
Query: 337 -------VEYLSR--RPGDYAEVYSDPSKIRDELNWTARFT 368
VE R RP + + DP+K +++L W +
Sbjct: 286 AKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVS 326
|
Length = 345 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 65/286 (22%), Positives = 105/286 (36%), Gaps = 73/286 (25%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQ---PGQLQFIY 107
VLVTG G+I SH +LLK Y+V V +LS+ L+ L +L+F+
Sbjct: 2 VLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSK-----SAKLKALLKAAGYNDRLEFVI 56
Query: 108 ADLGDAKAVNKIFAENAFD-------AVMHFA-AVAYVG----ESTLEPLRYYHNITSNT 155
D + A NA+D V+H A + G + ++P T
Sbjct: 57 VDD--------LTAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDP------AVEGT 102
Query: 156 LVILEAMAAHK-VKTLIYSSTCA----TYGEPDKMPITES-------TPQKPINPYGKAK 203
L +LEA A VK ++ +S+ A E TE + ++ Y +K
Sbjct: 103 LNVLEAAKAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASK 162
Query: 204 KMSEDIIIDFSKTTN----MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA 259
++E +F K + + Y V+G ++ +
Sbjct: 163 TLAEKAAWEFVKENKPKFELITINPGY--VLG-------------PSLLADELNSSN--- 204
Query: 260 ARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG 305
+I L + G Y+DV D+ DAHV AL + +
Sbjct: 205 --ELINKL-LDGKLPAIPPNLPF-GYVDVRDVADAHVRALESPEAA 246
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 47/288 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+LVTG G++GS+ LL YRV V + S + L P ++ + DL
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVL--------LDGLP--VEVVEGDL 50
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
DA ++ D V H AA + + Y N+ T +L+A V+ +
Sbjct: 51 TDAASLAAAMKG--CDRVFHLAAFTSLW-AKDRKELYRTNVEG-TRNVLDAALEAGVRRV 106
Query: 171 IYSSTCATYGEPDKMPITESTPQKPI---NPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
+++S+ A G P I E+TP N Y ++K ++E +++ + V++
Sbjct: 107 VHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAAEGLDVVIVN--- 163
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGA-CFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
P G P E +G D G +P G GT +
Sbjct: 164 ------PSAVFG--PGD---EGPTSTGLDVLDYLNGKLPAY-PPG-------GTSF---V 201
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN 334
DV D+ + H+ A+ + G+ Y +G G+ S K+ E + TGV
Sbjct: 202 DVRDVAEGHIAAMEKGRRGER--YILG-GENLSFKQLFETLAEITGVK 246
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|206121 pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase C-term subunit | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 5e-18
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 329 KATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
KA+G I E + RRPGD AE Y+DPSK EL W A L+ + +WRWQ + NGY
Sbjct: 4 KASGKKIPYEIVPRRPGDVAECYADPSKAEKELGWKAER-GLEDMCRDSWRWQSKNPNGY 62
|
This domain is the very C-terminal subunit of UDP-glucose 4-epimerase. Length = 62 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 1e-17
Identities = 93/344 (27%), Positives = 147/344 (42%), Gaps = 42/344 (12%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NMGAVK--VLQELFPQPGQLQFIY 107
L+TG AG+IGS LL + V +DN S G N+ V+ V +E Q + FI
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEE---QWSRFIFIQ 75
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
D+ K A D V+H AA+ V S +P+ L +L A V
Sbjct: 76 GDIRKFTDCQK--ACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
+ Y+++ +TYG+ +P E +P++PY K ++E F+++ + LRYF
Sbjct: 134 SSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYF 193
Query: 228 NVIG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
NV G +P G R I+ LK Y DG+ RD+
Sbjct: 194 NVFGRRQNPNGAYSAV-----------------IPRWILSLLKDEPI-YINGDGSTSRDF 235
Query: 286 IDVTDLVDAHVL-ALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR-- 342
+ +++ A++L A N K +YNV G S+ E + G+N+ SR
Sbjct: 236 CYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRD--GLNLWRNEQSRAE 293
Query: 343 ------RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
R GD +D +KI+ L++ F D++ L+ +W
Sbjct: 294 PIYKDFRDGDVKHSQADITKIKTFLSYEPEF-DIKEGLKQTLKW 336
|
Length = 348 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-16
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 17/170 (10%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQ-LQFIY 107
VL+TG +G++G A RLL D R+ ++D V+ P + I
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILID-----------VVSPKAPSGAPRVTQIA 50
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM-AAHK 166
DL + + D V H AA+ G L Y N+ T +LEA+
Sbjct: 51 GDLAVPALIEALANGRP-DVVFHLAAIVSGGAEADFDLGYRVNVDG-TRNLLEALRKNGP 108
Query: 167 VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT 216
+++S+ A YG P P+T+ T P + YG K M E ++ D+S+
Sbjct: 109 KPRFVFTSSLAVYGLPLPNPVTDHTALDPASSYGAQKAMCELLLNDYSRR 158
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 88/361 (24%), Positives = 135/361 (37%), Gaps = 96/361 (26%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG G +GS L + Y + + +EL DL
Sbjct: 2 ILVTGHRGLVGSAIVRVLARRGYENVVF--RTS---------KEL------------DLT 38
Query: 112 DAKAVNKIFAENAFDAVMHFAA-VAYVGESTLEPLRYYH-NITSNTLVILEAMAAHK--V 167
D +AV F + D V+H AA V + + P + N+ N VI AAH+ V
Sbjct: 39 DQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVI---HAAHRFGV 95
Query: 168 KTLIY-SSTCATYGEPDKMPITEST----PQKPIN-PYGKAKKMSEDIIIDFSKTTNMAV 221
K L++ S+C Y + PI ES P +P N Y AK+
Sbjct: 96 KKLVFLGSSC-IYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRA-------------GLK 141
Query: 222 MILRYFNVIGSDPEGRLGEAPHPELREHGRISGAC-----------FDAARG-IIPGL-- 267
+ + +++G + FD +IP L
Sbjct: 142 L-CEAYR------------------KQYGCDYISVMPTNLYGPHDNFDPENSHVIPALIR 182
Query: 268 -----KIRGTDYNTA--DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSV 320
K+RG T GT R+++ DL A V L N I NVG+G S+
Sbjct: 183 KFHEAKLRGGKEVTVWGSGTPRREFLYSDDLARAIVFLLENYDEP--IIVNVGSGVEISI 240
Query: 321 KEFVEACKKATGVNIKVEYLSRRP-GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWR 379
+E EA + G ++ + + +P G ++ D SK+R L W FT L+ ++ +
Sbjct: 241 RELAEAIAEVVGFKGEIVFDTSKPDGQPRKLL-DVSKLR-ALGWFP-FTPLEQGIRETYE 297
Query: 380 W 380
W
Sbjct: 298 W 298
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 4e-16
Identities = 91/344 (26%), Positives = 137/344 (39%), Gaps = 55/344 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-RGNMGAVKVLQELFP--QPGQLQFIY 107
+L+TGGAG+IGS ++ ++ V +VD L+ GN L L P Q + F
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN------LMSLAPVAQSERFAFEK 57
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEA------ 161
D+ D + ++F E+ D VMH AA ++V S P + T +LEA
Sbjct: 58 VDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWN 117
Query: 162 -MAAHKVKTLIYS--STCATYGEPDKMP--ITESTPQKPINPYGKAKKMSEDIIIDFSKT 216
+ K + ST YG+ TE+TP P +PY +K S+ ++ + +T
Sbjct: 118 ALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRT 177
Query: 217 TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276
+ +I N G PE I +A G L + G
Sbjct: 178 YGLPTLITNCSN--------NYGPYHFPE----KLIPLMILNALAG--KPLPVYG----- 218
Query: 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVE---------AC 327
+G +RD++ V D A K G+ YN+G R + VE A
Sbjct: 219 -NGQQIRDWLYVEDHARALYCVATTGKVGET--YNIGGHNERKNLDVVETICELLEELAP 275
Query: 328 KKATGV---NIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
K GV + +++ RPG D SKI EL W + T
Sbjct: 276 NKPQGVAHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQET 319
|
Length = 355 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 6e-15
Identities = 96/349 (27%), Positives = 151/349 (43%), Gaps = 69/349 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYAD 109
+LVTGGAG+IGS ++ ++ V VD L+ GN+ ++ + + + F +AD
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSD----SERYVFEHAD 58
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEA-------M 162
+ D +++IFA++ DAVMH AA ++V S P + T V+LEA +
Sbjct: 59 ICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118
Query: 163 AAHKVKTLIYS--STCATYGE---PD------KMPI-TESTPQKPINPYGKAKKMSEDII 210
K + ST YG+ PD ++P+ TE+T P +PY +K S+ ++
Sbjct: 119 DEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLV 178
Query: 211 IDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLK 268
+ +T + ++ N G P+ PE I +A G L
Sbjct: 179 RAWLRTYGLPTIVTNCSNNYG----------PYHFPE----KLIPLVILNALEG--KPLP 222
Query: 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVG-IYNVGTGKGRSVKEFVEA 326
I G G +RD++ V D H AL GK G YN+G G + K+ ++
Sbjct: 223 IYGK------GDQIRDWLYVED----HARALYKVVTEGKAGETYNIG---GHNEKKNLDV 269
Query: 327 CK-----------KATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWT 364
KAT ++ Y++ RPG D SKI EL W
Sbjct: 270 VLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISRELGWK 318
|
Length = 352 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG AG +G R L S RV VD L R P +++++ D+
Sbjct: 1 ILVTGAAGGLG-RLLARRLAASPRVIGVDGLDRRRPP---------GSPPKVEYVRLDIR 50
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D A +F E DAV+H A + + R+ N+ T +L+A AA V ++
Sbjct: 51 DPAAA-DVFREREADAVVHLAFI--LDPPRDGAERHRINVDG-TQNVLDACAAAGVPRVV 106
Query: 172 YSSTCATYG--EPDKMPITESTPQK--PINPYGKAKKMSEDIIIDFSKT-TNMAVMILRY 226
+S+ A YG + P+TE P + P Y + K E ++ +F + + V +LR
Sbjct: 107 VTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTVLRP 166
Query: 227 FNVIG 231
++G
Sbjct: 167 ATILG 171
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 2e-14
Identities = 86/336 (25%), Positives = 137/336 (40%), Gaps = 58/336 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++VTGGAG++GSH +L+ V ++DN G + L LF P + + I D+
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRK---ENLVHLFGNP-RFELIRHDV- 177
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHN----ITSNTLVILEAMA-AHK 166
V I E D + H A A P+ Y +N I +N + L + A +
Sbjct: 178 ----VEPILLE--VDQIYHLACPA-------SPVHYKYNPVKTIKTNVMGTLNMLGLAKR 224
Query: 167 VKT-LIYSSTCATYGEPDKMPITESTPQKPINP------YGKAKKMSEDIIIDFSKTTNM 219
V + +ST YG+P + P E T +NP Y + K+ +E + +D+ + +
Sbjct: 225 VGARFLLTSTSEVYGDPLEHPQKE-TYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGV 283
Query: 220 AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI--IPGLKIRGTDYNT- 276
V I R FN G P + C D R + IR
Sbjct: 284 EVRIARIFNTYG------------PRM---------CLDDGRVVSNFVAQTIRKQPMTVY 322
Query: 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK 336
DG R + V+DLVD V + VG +N+G ++ E E K+ +
Sbjct: 323 GDGKQTRSFQYVSDLVDGLVALMEGE---HVGPFNLGNPGEFTMLELAEVVKETIDSSAT 379
Query: 337 VEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQG 372
+E+ D + D SK ++ LNW + + +G
Sbjct: 380 IEFKPNTADDPHKRKPDISKAKELLNWEPKISLREG 415
|
Length = 436 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 9e-14
Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 48/339 (14%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVK-VLQELF-PQPGQLQFIYAD 109
L+TG G GS+ A LL+ Y V ++ S N ++ + ++ +++ Y D
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGD 63
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM----AAH 165
L D+ + +I E + + AA ++V S P TL +LEA+
Sbjct: 64 LTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIK 123
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
VK +ST YG+ ++P E+TP P +PY AK + I +++ + + +
Sbjct: 124 SVK-FYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGLFAVNGI 182
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
FN E+P R ++ AA I GL+ + RD+
Sbjct: 183 LFN----------HESP---RRGENFVTRKITRAAAKIKLGLQ---EKLYLGNLDAKRDW 226
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVE-------------------- 325
D V+A L L KP Y + TG+ SV+EFVE
Sbjct: 227 GHAKDYVEAMWLMLQQDKPDD---YVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEV 283
Query: 326 -ACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNW 363
CK+ V+++++ RP + + D +K +++L W
Sbjct: 284 GRCKETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGW 322
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQEL---FPQPGQLQFIYA 108
VLVTGG G IGS ++LK + + I+ SR + EL FP+ +L+F
Sbjct: 253 VLVTGGGGSIGSELCRQILKFNPKEIIL--FSRDEYKLYLIDMELREKFPEL-KLRFYIG 309
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-------NITSNTLVILEA 161
D+ D V + + D V H AA+ +V PL Y+ N+ T + EA
Sbjct: 310 DVRDRDRVERAMEGHKVDIVFHAAALKHV------PLVEYNPEEAIKTNVLG-TENVAEA 362
Query: 162 MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIII---DFSKTTN 218
+ VK + ST DK P N G K+++E + T
Sbjct: 363 AIKNGVKKFVLIST-------DKA-------VNPTNVMGATKRLAEKLFQAANRNVSGTG 408
Query: 219 MAVMILRYFNVIGS 232
++R+ NV+GS
Sbjct: 409 TRFCVVRFGNVLGS 422
|
Length = 588 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 67/265 (25%), Positives = 103/265 (38%), Gaps = 54/265 (20%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
VLVTG G++GS LL+ RV + R N+ + V + + D
Sbjct: 3 VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDV-----------EIVEGD 51
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L D ++ K A A+ H AA + +P Y T +L A V+
Sbjct: 52 LRDPASLRK--AVAGCRALFHVAADYRLW--APDPEEMYAANVEGTRNLLRAALEAGVER 107
Query: 170 LIYSSTCATYG-EPDKMPITESTPQKP---INPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
++Y+S+ AT G D P E+TP I Y ++K ++E ++ + + V+I
Sbjct: 108 VVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVI-- 165
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP-----GLKIRGTDYNTADGT 280
V S P G P P GRI D G +P GL +
Sbjct: 166 ---VNPSTPIGPRDIKPTPT----GRI---IVDFLNGKMPAYVDTGLNL----------- 204
Query: 281 CVRDYIDVTDLVDAHVLALANAKPG 305
+ V D+ + H+LAL + G
Sbjct: 205 -----VHVDDVAEGHLLALERGRIG 224
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 88/333 (26%), Positives = 138/333 (41%), Gaps = 52/333 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V+VTGGAG++GSH RL+ V +VDN G V F P + I D+
Sbjct: 122 VVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENV---MHHFSNP-NFELIRHDV- 176
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHN----ITSNTLVILEAMA-AHK 166
V I E D + H A A P+ Y N I +N + L + A +
Sbjct: 177 ----VEPILLE--VDQIYHLACPA-------SPVHYKFNPVKTIKTNVVGTLNMLGLAKR 223
Query: 167 VKT-LIYSSTCATYGEPDKMPITESTPQKPINP------YGKAKKMSEDIIIDFSKTTNM 219
V + +ST YG+P + P E T +NP Y + K+ +E + +D+ + N+
Sbjct: 224 VGARFLLTSTSEVYGDPLQHPQVE-TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANV 282
Query: 220 AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279
V I R FN G P + + +S A R K T Y DG
Sbjct: 283 EVRIARIFNTYG----------PRMCIDDGRVVSNFVAQALR------KEPLTVY--GDG 324
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
R + V+DLV+ ++ L + VG +N+G ++ E + ++ N K+E+
Sbjct: 325 KQTRSFQFVSDLVEG-LMRLMEGE--HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEF 381
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQG 372
D + D +K ++ L W + + QG
Sbjct: 382 RPNTEDDPHKRKPDITKAKELLGWEPKVSLRQG 414
|
Length = 442 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-12
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 39/269 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VLVTG +G++ SH +LL+ Y+V V + S + V L +L +PG+L+ ADL
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPS--KVKKVNHLLDLDAKPGRLELAVADL 58
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKT 169
D ++ +++ A V H A V S+ +P TL L+A AA K VK
Sbjct: 59 TDEQSFDEVIKGCAG--VFHVATP--VSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKR 114
Query: 170 LIYSSTCATYGEP---------DKMPITE----STPQKPINPYGKAKKMSEDIIIDFSKT 216
+ +S+ + P D+ S P+K Y +K ++E F+
Sbjct: 115 FVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADE 174
Query: 217 TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276
N ++I P +G E + + G+ P L + Y
Sbjct: 175 NN--------IDLITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGY-- 224
Query: 277 ADGTCVRDYIDVTDLVDAHVLALANAKPG 305
Y+ V D+ AH+ L
Sbjct: 225 --------YVHVVDICLAHIGCLELPIAR 245
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 27/189 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG--QLQFIYAD 109
VLVTGG G IGS ++LK + + I+ SR ++ QEL + +L+F D
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIIL--FSRDEFKLYEIRQELRQEYNDPKLRFFIGD 58
Query: 110 LGDAKAVNKIFAENAFDAVMHFAA---VAYVGESTLEPLRYYHNITSNTLVILEAMAAHK 166
+ D + + + ++ D V H AA V V + +E ++ N+ T + EA +
Sbjct: 59 VRDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIK--TNVLG-TENVAEAAIENG 115
Query: 167 VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTN---MAVMI 223
V+ + ST DK P N G K+++E + ++ + +
Sbjct: 116 VEKFVLIST-------DK-------AVNPTNVMGATKRLAEKLFQAANRESGSGKTRFSV 161
Query: 224 LRYFNVIGS 232
+R+ NV+GS
Sbjct: 162 VRFGNVLGS 170
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 75/363 (20%), Positives = 130/363 (35%), Gaps = 62/363 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVT--IVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
VLVTG G+ GS +L L + +V +D + N+ + L + D
Sbjct: 7 VLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNK------ISSTRGD 60
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK 168
+ D A+ + E + V H AA V S +P+ + T+ +LEA+ VK
Sbjct: 61 IRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSVK 120
Query: 169 TLIYSSTCATYGEPDKM-PITESTPQKPINPYGKAKKMSEDIIIDFSKT---------TN 218
++ ++ Y + E+ P +PY +K +E II + +
Sbjct: 121 AVVNVTSDKCYENKEWGWGYRENDPLGGHDPYSSSKGCAELIISSYRNSFFNPENYGKHG 180
Query: 219 MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG-LK--IRGTDYN 275
+A+ R NVIG G + R I+P ++ G
Sbjct: 181 IAIASARAGNVIG----------------------GGDWAEDR-IVPDCIRAFEAGERVI 217
Query: 276 TADGTCVRDYIDVTDLVDAHVL---ALANAKPGKVGIYNVG--TGKGRSVKEFVEACKKA 330
+ +R + V + + ++L L +N G +V E VEA +
Sbjct: 218 IRNPNAIRPWQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARY 277
Query: 331 TGVNIKVEYLSRRPGDYAEV------YSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
G E + D SK + L W R+ +L+ +L+ W K
Sbjct: 278 WG-----EDARWDLDGNSHPHEANLLKLDCSKAKTMLGWRPRW-NLEETLEFTVAWYKEW 331
Query: 385 ING 387
++G
Sbjct: 332 LSG 334
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 27/182 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+ G G+IG A LL+ + VT++ ++ L + +P + DL
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKR-------LSKEDQEPVAVVEG--DLR 51
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D +++ D V+H A E T N +LEA VK I
Sbjct: 52 DLDSLSDAVQGV--DVVIHLAGAPRDTRDFCEVDV---EGTRN---VLEAAKEAGVKHFI 103
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+ S+ YG+ E T P +PY K +E ++ + S I+R VI
Sbjct: 104 FISSLGAYGDLH-----EETEPSPSSPYLAVKAKTEAVLREASLP----YTIVR-PGVIY 153
Query: 232 SD 233
D
Sbjct: 154 GD 155
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 81/333 (24%), Positives = 126/333 (37%), Gaps = 47/333 (14%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADL 110
L+TG G GS+ LL Y V I+ S N + + + Y DL
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDL 69
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
DA ++ + + D V + AA ++V S P + + L +LEA+ H +T
Sbjct: 70 SDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETG 129
Query: 171 IY-----SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
+ + YG P +E+TP P +PY AK + +++ + +
Sbjct: 130 RQIKYYQAGSSEMYGSTPP-PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGI 188
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV--- 282
FN E+P R ++ A I GL+ +
Sbjct: 189 LFN----------HESPR---RGENFVTRKITRAVGRIKVGLQ-----------KKLFLG 224
Query: 283 -----RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK- 336
RD+ D V+A L L KP Y V T + +V+EF+E G+N K
Sbjct: 225 NLDASRDWGFAGDYVEAMWLMLQQEKPDD---YVVATEESHTVEEFLEEAFGYVGLNWKD 281
Query: 337 -VEYLSR--RPGDYAEVYSDPSKIRDELNWTAR 366
VE R RP + + D SK R+ L W +
Sbjct: 282 HVEIDPRYFRPAEVDNLKGDASKAREVLGWKPK 314
|
Length = 340 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 92/339 (27%), Positives = 130/339 (38%), Gaps = 67/339 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV-LQELFPQPG--------- 101
VL+ GG GY G AL L K + V IVDNL R V++ L+ L P
Sbjct: 3 VLILGGDGYCGWPTALHLSKRGHEVCIVDNLVR-RRIDVELGLESLTPIASIHERLRAWK 61
Query: 102 -----QLQFIYADLGDAKAVNKIFAENAFDAVMHFA---AVAYVGESTLEPLRYYHNITS 153
++F D D + + ++ A + DAV+HFA + Y HN
Sbjct: 62 ELTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNVI 121
Query: 154 NTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITES------TPQKPINPYGK- 201
TL +L A+ H VK T YG P+ + I E ++ PY K
Sbjct: 122 GTLNLLFAIKEFDPDCHLVKL----GTMGEYGTPN-IDIPEGYITIEHNGRRDTLPYPKQ 176
Query: 202 ------AKKMSEDIIIDFS-KTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISG 254
K+ + I F+ K + + L V G+ E L G
Sbjct: 177 AGSWYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTE---ETEADERLINRFDYDG 233
Query: 255 A--------CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AKPG 305
C AA G P L + G G R +I + D V LAL N AK G
Sbjct: 234 VFGTVLNRFCVQAAIG-HP-LTVYGK------GGQTRGFISIRDTVQCLELALENPAKAG 285
Query: 306 KVGIYNVGTGKGRSVKEFVEACKKA---TGVNIKVEYLS 341
+ ++N T + SV E E +A G+++KVE+L
Sbjct: 286 EYRVFNQFTEQ-FSVGELAEMVAEAGSKLGLDVKVEHLP 323
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 73/291 (25%), Positives = 116/291 (39%), Gaps = 59/291 (20%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YAD 109
++VTGGAG+IGS+ L + +VDNL G +F+ D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-----------------KFVNLVD 44
Query: 110 LGDAKAVNK------IFAENAF---DAVMHFAAVAYVGESTLEPLRYY--HNITSNTLVI 158
L A ++K I A + F +A+ H A + ST E Y N + +
Sbjct: 45 LDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACS----STTEWDGKYMMDNNYQYSKEL 100
Query: 159 LEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTN 218
L ++ L Y+S+ ATYG I E +KP+N YG +K + ++ + N
Sbjct: 101 LHYCLEREIPFL-YASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILPEAN 159
Query: 219 MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR---GTDYN 275
+ RYFNV G P G ++ F + G + G++
Sbjct: 160 SQICGFRYFNVYG------------PREGHKGSMASVAFHLNNQLNNGENPKLFEGSE-- 205
Query: 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA 326
RD++ V D+ ++ N G GI+N GTG+ S + +A
Sbjct: 206 ----NFKRDFVYVGDVAAVNLWFWEN---GVSGIFNCGTGRAESFQAVADA 249
|
Length = 308 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 55/259 (21%), Positives = 92/259 (35%), Gaps = 51/259 (19%)
Query: 52 VLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VLVTGG+G+ G +LL + V D G Q ++F+ D+
Sbjct: 2 VLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPG-------EALSAWQHPNIEFLKGDI 54
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D V + A + D V H A A V + L + N+ T +L+A V+
Sbjct: 55 TDRNDVEQ--ALSGADCVFHTA--AIVPLAGPRDLYWEVNVGG-TQNVLDACQRCGVQKF 109
Query: 171 IYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
+Y+S+ + + +P P + Y + K ++E I+++ + ++
Sbjct: 110 VYTSSSSVIFGGQNIHNGDETLPY----PPLDSDMYAETKAIAEIIVLEANGRDDLLTCA 165
Query: 224 LRYFNVIGSDPEGRLGEAPHPELREH----------------------GRISGACFDAAR 261
LR + G G G P L E ++ A AA
Sbjct: 166 LRPAGIFG---PGDQGLVPI--LFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAA 220
Query: 262 GIIPGLKIRGTDYNTADGT 280
++ G I G Y D
Sbjct: 221 ALVKGKTISGQTYFITDAE 239
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 66/270 (24%), Positives = 106/270 (39%), Gaps = 59/270 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
V VTG +G+IGS RLL+ Y V V + G+ V L EL +L+ ADL
Sbjct: 1 VCVTGASGFIGSWLVKRLLQRGYTVRATVRDP--GDEKKVAHLLELEGAKERLKLFKADL 58
Query: 111 GDAKAVNKIFAENAFD---AVMHFAA-----VAYVGESTLEPLRYYHNITSNTLVILEAM 162
D + + A D V H A+ E +EP TL +LEA
Sbjct: 59 LDYGSF-----DAAIDGCDGVFHVASPVDFDSEDPEEEMIEP------AVKGTLNVLEAC 107
Query: 163 A-AHKVKTLIYSSTCATY----GEPDKMPITES--TP----QKPINPYGKAKKMSEDIII 211
A A VK ++++S+ A + + ES + +K Y +K ++E
Sbjct: 108 AKAKSVKRVVFTSSVAAVVWNPNRGEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAW 167
Query: 212 DFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269
+F++ ++ + V+G P L+ S ++ I+ LK
Sbjct: 168 EFAEENGLDLVTVNPSL--VVG------------PFLQPSLNSS------SQLILSLLK- 206
Query: 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLAL 299
G +G+ + V D+ DAH+L
Sbjct: 207 -GNAEMYQNGSLA--LVHVDDVADAHILLY 233
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 47/256 (18%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYAD 109
LV GG+G++G H +LL+ V + D ++ EL P G++QF D
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRGNPTVHVFD---------IRPTFELDPSSSGRVQFHTGD 52
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L D + + K F E + V H A+ YY T ++EA VK
Sbjct: 53 LTDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCGVKK 108
Query: 170 LIY-SSTCATYGEPDKMPITESTP--QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
L+Y SS + D + ES P K + Y + K ++E ++L+
Sbjct: 109 LVYTSSASVVFNGQDIINGDESLPYPDKHQDAYNETKALAEK-------------LVLK- 154
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL----KIRGTDYNTADGTCV 282
+DPE L LR G I G R ++PGL K T + DG +
Sbjct: 155 ----ANDPESGLLTC---ALRPAG-IFGP---GDRQLVPGLLKAAKNGKTKFQIGDGNNL 203
Query: 283 RDYIDVTDLVDAHVLA 298
D+ V ++ AH+LA
Sbjct: 204 FDFTYVENVAHAHILA 219
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 77/331 (23%), Positives = 110/331 (33%), Gaps = 56/331 (16%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
V VTG G+IGS L+ + V L+R + GA G Q DL
Sbjct: 2 KVFVTGATGFIGSAVVRELVAAGHEVV---GLARSDAGA-----AKLEAAG-AQVHRGDL 52
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM---AAHKV 167
D + K AE DAV+H A T + + + I EA+
Sbjct: 53 EDLDILRKAAAEA--DAVIHLAF-------THDFDNFAQACEVDRRAI-EALGEALRGTG 102
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
K LIY+S G E P P P A+ +SE ++ ++ A ++
Sbjct: 103 KPLIYTSGIWLLGPTGGQEEDEEAPDDP--PTPAARAVSEAAALELAERGVRASVVRLPP 160
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
V HGR F I + +G DG +
Sbjct: 161 VV-------------------HGRGDHG-FVPMLIAI--AREKGVSAYVGDGKNRWPAVH 198
Query: 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV---NIKVEYLSRRP 344
D + LAL K G +Y+ +G VK+ EA + GV +I E +
Sbjct: 199 RDDAARLYRLALEKGKAG--SVYHAVAEEGIPVKDIAEAIGRRLGVPVVSIPAEEAAAHF 256
Query: 345 GDYAEVYS-----DPSKIRDELNWTARFTDL 370
G A + K R L W + L
Sbjct: 257 GWLAMFVALDQPVSSQKTRRRLGWKPQQPSL 287
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 72/297 (24%), Positives = 111/297 (37%), Gaps = 59/297 (19%)
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAA-VAYVGESTLEPLRYYHN---ITSNTLVILEAMAA 164
DL V FA+ V+ AA V + + P + I +N +++A
Sbjct: 34 DLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTN---VIDAAYR 90
Query: 165 HKVKTLIYSSTCATYGEPDK--MPITEST----PQKPINP-YGKAKKMSEDIIIDFSKTT 217
H VK L++ + Y P PI E+ P +P N Y AK
Sbjct: 91 HGVKKLLFLGSSCIY--PKFAPQPIPETALLTGPPEPTNEWYAIAKIAGI--------KM 140
Query: 218 NMAVMILRYFNVIGSDPEGRLGEAP--HPELREHGRISGACFDAARGIIPGL-------K 268
A I ++ I P G HPE H +IP L K
Sbjct: 141 CQAYRIQYGWDAISGMPTNLYGPHDNFHPE-NSH-------------VIPALIRRFHEAK 186
Query: 269 IRGTDYNTA--DGTCVRDYIDVTDLVDAHVLALAN---AKPGKVGIYNVGTGKGRSVKEF 323
G G+ +R+++ V DL DA V + A+ NVG+G ++KE
Sbjct: 187 ANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGAEH-----VNVGSGDEVTIKEL 241
Query: 324 VEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
E K+ G ++ + + +P D SK+R L W +F+ L+ LQ ++W
Sbjct: 242 AELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SLGWDPKFS-LKDGLQETYKW 296
|
Length = 306 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 33/178 (18%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TG G +G L + Y V R K+ DL
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVI---GTGRSRASLFKL----------------DLT 42
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAHKVK 168
D AV + + D +++ AA V + +P N + A +
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPEL---AYRVNVLAPENLARAAKEVGAR 99
Query: 169 TLIYSST-CATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
LI+ ST G K P E P+N YGK+K + E +++ + +ILR
Sbjct: 100 -LIHISTDYVFDG--KKGPYKEEDAPNPLNVYGKSKLLGEVAVLNANPRY----LILR 150
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 61/264 (23%), Positives = 100/264 (37%), Gaps = 54/264 (20%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVL-----QELFPQPGQLQ--- 104
LVTGG G++G H LL+ G + V+V EL +LQ
Sbjct: 1 LVTGGGGFLGRHIVRLLLR------------EGELQEVRVFDLRFSPELLEDFSKLQVIT 48
Query: 105 FIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA 164
+I D+ D + + + A D V+H AA+ V T +L+A
Sbjct: 49 YIEGDVTDKQDLRR--ALQGSDVVIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVK 105
Query: 165 HKVKTLIYSSTCA-----TYGEP-----DKMPITESTPQKPINPYGKAKKMSEDIIIDFS 214
V+ L+Y+S+ +YG+P + P EST Q +PY ++K ++E
Sbjct: 106 AGVRVLVYTSSMEVVGPNSYGQPIVNGDETTPY-ESTHQ---DPYPESKALAEK------ 155
Query: 215 KTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274
++L+ + A LR G ++ LK +
Sbjct: 156 -------LVLKANGSTLKNGGRLYTCA----LRPAGIFGEGDPFLFPFLVRLLKNGLAKF 204
Query: 275 NTADGTCVRDYIDVTDLVDAHVLA 298
T D + D + V ++ AH+LA
Sbjct: 205 RTGDKNVLSDRVYVGNVAWAHILA 228
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 67/313 (21%), Positives = 124/313 (39%), Gaps = 53/313 (16%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG--NMGAVKVLQELFPQ--------- 99
VL+TG G++G++ LL+ S + ++ L R A++ L+E
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVI-CLVRAASEEHAMERLREALRSYRLWHEDLA 59
Query: 100 -------PGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAA-VAYVGE-STLEPLRYYHN 150
G L L DA+ AEN D ++H A V +V S L N
Sbjct: 60 RERIEVVAGDLSEPRLGLSDAEWE--RLAENV-DTIVHNGALVNWVYPYSELRGA----N 112
Query: 151 ITSNTLVILEAMAAHKVKTLIYSSTCA--TYGEPDKMPITEST---PQKPINPYGKAKKM 205
+ T +L A+ + K L Y ST + + + ++T P Y ++K +
Sbjct: 113 VLG-TREVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWV 171
Query: 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265
+E +++ + + V I+R ++G+ G + + + G A G P
Sbjct: 172 AE-LLVREASDRGLPVTIVRPGRILGNSYTGAI----NSSDILWRMVKGC---LALGAYP 223
Query: 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVE 325
T+ D T V D++ VL+ A +++V + S+ EF++
Sbjct: 224 QS-PELTE----DLTPV-DFVA----RAIVVLSSRPAASAGGPVFHVVNPEPVSLDEFLD 273
Query: 326 ACKKATGVNIKVE 338
++A G N+++
Sbjct: 274 WLERA-GYNLRLV 285
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 66/257 (25%), Positives = 100/257 (38%), Gaps = 44/257 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TGG GY G L K V + D + QEL P ++FI AD+
Sbjct: 2 VLITGGGGYFGFRLGCALAKSGVHVILFD--------IRRPQQEL---PEGIKFIQADVR 50
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + K A D V H A+ G L T I++ +V LI
Sbjct: 51 DLSQLEKAVA--GVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPRLI 108
Query: 172 YSST--CATYGEPDKMPITESTPQKP----INPYGKAKKMSEDIIIDFSKTTNMAVM--- 222
Y+ST G+P + ES P P ++ Y + K ++E +++ K NM +
Sbjct: 109 YTSTFNVIFGGQPIRNG-DESLPYLPLDLHVDHYSRTKSIAEQLVL---KANNMPLPNNG 164
Query: 223 -ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281
+LR + P G G E R RI ++ + D
Sbjct: 165 GVLRTCAL---RPAGIYGPG---EQRHLPRIVSY-----------IEKGLFMFVYGDPKS 207
Query: 282 VRDYIDVTDLVDAHVLA 298
+ +++ V +LV AH+LA
Sbjct: 208 LVEFVHVDNLVQAHILA 224
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 87/353 (24%), Positives = 126/353 (35%), Gaps = 71/353 (20%)
Query: 39 TKAFPRHEPGV------THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV 92
T+ PG V+V GG GY G AL L K Y V IVDNL R
Sbjct: 31 TELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLG 90
Query: 93 LQELFPQPG--------------QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVG 138
L L P +++ D+ D + +++ F DAV+HF
Sbjct: 91 LDSLTPIASIHERVRRWKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAP 150
Query: 139 ESTLEPLRYYHNITSN---TLVILEAMAAHKVKT-LIYSSTCATYGEP------------ 182
S ++ R +N TL +L A+ L+ T YG P
Sbjct: 151 YSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDIEEGYITIT 210
Query: 183 -----DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG-SDPEG 236
D +P P++ + Y +K I K + L V G E
Sbjct: 211 HNGRTDTLPY----PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDET 266
Query: 237 RLGEAPHPELREHGRISGA--------CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
+ EL G C AA G P L + G T R ++D+
Sbjct: 267 MM----DEELINRLDYDGVFGTALNRFCVQAAVG-HP-LTVYGKGGQT------RGFLDI 314
Query: 289 TDLVDAHVLALAN-AKPGKVGIYNVGTGKGRSVKEFVEACKKA---TGVNIKV 337
D V +A+AN AKPG+ ++N T + SV E + KA G++++V
Sbjct: 315 RDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAGEKLGLDVEV 366
|
Length = 442 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+L+TG G +G+ R L + V R + D+
Sbjct: 2 KILITGANGQLGTELR-RALPGEFEVIA---TDRAEL---------------------DI 36
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKT 169
D AV ++ E D V++ AA V ++ EP + N T + A A +
Sbjct: 37 TDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATG-AENLARAAAEVGAR- 94
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIII 211
L++ ST + P E+ P+N YG++K E+ +
Sbjct: 95 LVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVR 136
|
Length = 281 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 52/219 (23%), Positives = 83/219 (37%), Gaps = 45/219 (20%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--MGAVKVLQELFPQPGQLQFIYA 108
+VL+TG G++G++ L LL S I L R A+ L++ F + A
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVIC--LVRAQSDEAALARLEKTFDLYRHWDELSA 59
Query: 109 D---------------LGDAKAVNKIFAENAFDAVMHFAA-VAYVGE-STLEPLRYYHNI 151
D L + AEN D ++H AA V +V S L
Sbjct: 60 DRVEVVAGDLAEPDLGLSERTWQE--LAENV-DLIIHNAALVNHVFPYSELRG------- 109
Query: 152 TSNTLVILEAM---AAHKVKTLIYSSTCATYG---------EPDKMPITESTPQKPINPY 199
+N L E + A K K L Y S+ + + D++ T + Q Y
Sbjct: 110 -ANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGY 168
Query: 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRL 238
G++K ++E ++ + + V I R + G G L
Sbjct: 169 GRSKWVAEKLVREAGD-RGLPVTIFRPGYITGDSRTGAL 206
|
Length = 382 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGG G G RLL++ Y + SR + + +Q+ FP P L+F D+
Sbjct: 7 ILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDELKQWE-MQQKFPAP-CLRFFIGDVR 63
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKTL 170
D + + + A D V+H AA+ V + P NI VI +A + VK +
Sbjct: 64 DKERLTR--ALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVI-DAAIDNGVKRV 120
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDF-----SKTTNMAVMILR 225
+ ST DK PIN YG K S+ + + SK T +V +R
Sbjct: 121 VALST-------DK-------AANPINLYGATKLASDKLFVAANNISGSKGTRFSV--VR 164
Query: 226 YFNVIGS 232
Y NV+GS
Sbjct: 165 YGNVVGS 171
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 66/273 (24%), Positives = 93/273 (34%), Gaps = 54/273 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG G +G RLL + + L R + DL
Sbjct: 1 ILVTGANGQLGR-ELTRLLAERGVEVVA--LDRPEL---------------------DLT 36
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKTL 170
D +AV + E D V++ AA V ++ EP Y N + EA AA L
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALG-PGNLAEACAARGAP-L 94
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
I+ ST + P E P P+N YG+ K E ++ + ILR V
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAANPRHL----ILRTAWVY 150
Query: 231 GSDPEG------RLGEAPHPELR----EHGR------ISGACFDAARGIIPGLKIRGTDY 274
G RL ELR + G ++ A R + G + GT +
Sbjct: 151 GEYGNNFVKTMLRLAAE-RDELRVVDDQLGSPTSARDLADALLALIRKRLRGPALAGTYH 209
Query: 275 NTADGTCVRDYIDVTDLVDAHVLALANAKPGKV 307
G D A + A A G+V
Sbjct: 210 LAGSGETSW-----YDFARA-IFDEAGADGGRV 236
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + + D +M +++F +F DL
Sbjct: 24 ICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS-----EDMFCH----EFHLVDL- 73
Query: 112 DAKAVNKIFAENAFDAVMHFAA-VAYVG--ESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
N + D V + AA + +G +S + Y N T + +LEA + VK
Sbjct: 74 -RVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMY--NNTMISFNMLEAARINGVK 130
Query: 169 TLIYSSTCATYGE----PDKMPITEST--PQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
Y+S+ Y E + + ES P +P + YG K +E++ ++K +
Sbjct: 131 RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECR 190
Query: 223 ILRYFNVIG 231
I R+ N+ G
Sbjct: 191 IGRFHNIYG 199
|
Length = 370 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TG G +G +L + RV + S+ DL
Sbjct: 2 ILITGANGQLGRELVQQLSPE-GRVVVALTRSQ-----------------------LDLT 37
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D +A+ ++ DAV++ AA V + +P + + + A A H + L+
Sbjct: 38 DPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGAR-LV 96
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207
+ ST + K P E P+N YG++K E
Sbjct: 97 HISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGE 132
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYAD 109
LVTG A +G ALRL + V + R + A + L E G + Q + AD
Sbjct: 8 VALVTGAARGLGRAIALRLARAGADVVVH---YRSDEEAAEELVEAVEALGRRAQAVQAD 64
Query: 110 LGDAKAVNKIFAE-----NAFDAVMHFAAVA 135
+ D A+ A D +++ A +
Sbjct: 65 VTDKAALEAAVAAAVERFGRIDILVNNAGIF 95
|
Length = 249 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 22/174 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V G +G IG A L + + V +V ++ + AD
Sbjct: 2 AHVLGASGPIGREVARELRRRGWDVRLVSRSGSKL-----------AWLPGVEIVAADAM 50
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
DA +V A A D + H A AY L P + N + A A+ K L+
Sbjct: 51 DASSVIAA-ARGA-DVIYHCANPAYTRWEELFP-----PLMENVV---AAAEANGAK-LV 99
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
YG PITE TP +P G+ + E+ ++ ++ +I+R
Sbjct: 100 LPGNVYMYGPQAGSPITEDTPFQPTTRKGRIRAEMEERLLAAHAKGDIRALIVR 153
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 18/145 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG + IG A RL ++ +V + D + + + ++ L G + AD+
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLAD-RNEEALAELAAIEAL---GGNAVAVQADVS 56
Query: 112 DAKAVNKIFAE--NAF---DAVMHFAAVAYVG---ESTLEPLRYY--HNITSNTLVI--- 158
D + V + E F D +++ A +A G E T E N+T L+
Sbjct: 57 DEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAA 116
Query: 159 LEAMAAHKVKTLIY-SSTCATYGEP 182
L M ++ SS P
Sbjct: 117 LPHMKKQGGGRIVNISSVAGLRPLP 141
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 35/154 (22%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+++TGG G+IG RL + V + LSR P +
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVV---LSR------------RPGKAEGLAEVITW 45
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHN---------ITSNTLVILEA 161
A DAV++ A GE R+ I S T V++EA
Sbjct: 46 DGLSLGPWEL-PGA-DAVINLA-----GEPIACR-RWTEANKKEILSSRIES-TRVLVEA 96
Query: 162 MAA--HKVKTLIYSSTCATYGEPDKMPITESTPQ 193
+A K LI +S YG +TE++P
Sbjct: 97 IANAPAPPKVLISASAVGYYGHSGDEVLTENSPS 130
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 18/195 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V VTGG G++G H RLL++ ++V + L R + + + + + G
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLV---LVRSE-SLGEAHERIEEAGLEADRVRVLEG 56
Query: 112 DAKAVNKIFAENAF-------DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA 164
D N + A D V+H AA Y ++ E + NI T +LE A
Sbjct: 57 DLTQPNLGLSAAASRELAGKVDHVIHCAAS-YDFQAPNEDA-WRTNIDG-TEHVLELAAR 113
Query: 165 HKVKTLIYSSTCATYGE-PDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKTTNMAVM 222
++ Y ST G + TE P + NPY ++K +E ++ + + +
Sbjct: 114 LDIQRFHYVSTAYVAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQ--IPLT 171
Query: 223 ILRYFNVIGSDPEGR 237
+ R V+G GR
Sbjct: 172 VYRPSIVVGDSKTGR 186
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 24/163 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQ-----FI 106
+L+TGG G IGS A LL+ Y G V+ +P F
Sbjct: 2 ILITGGLGQIGSELAK-LLRKRY-------------GKDNVIASDIRKPPAHVVLSGPFE 47
Query: 107 YADLGDAKAVNKIFAENAFDAVMHFAAV-AYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
Y D+ D K++ +I + ++H AA+ + VGE PL + N+ +LE H
Sbjct: 48 YLDVLDFKSLEEIVVNHKITWIIHLAALLSAVGEKNP-PLAWDVNMNG-LHNVLELAREH 105
Query: 166 KVKTLIYSSTCATYG-EPDKMPITESTPQKPINPYGKAKKMSE 207
++ + ST +G + + T Q+P YG +K +E
Sbjct: 106 NLR-IFVPSTIGAFGPTTPRNNTPDDTIQRPRTIYGVSKVAAE 147
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-06
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
LVTG + IG ALRL D +V I D A + EL G+ + + D+
Sbjct: 7 TALVTGASRGIGRAIALRLAADGAKVVIYD---SNEEAAEALAAELRAAGGEARVLVFDV 63
Query: 111 GDAKAVNKIFAENAFDAVM-HFAAVAYV 137
D AV +A + F A+ +
Sbjct: 64 SDEAAV-----RALIEAAVEAFGALDIL 86
|
Length = 246 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL-G 111
LVTGG G++G H LL+ + + L + L E F + Q + D+ G
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVL---DKAFGPELIEHF-EKSQGKTYVTDIEG 58
Query: 112 DAKAVNKIF-AENAFDAVMHFAAVAYV-GESTLEPLRYYHNITSN-TLVILEAMAAHKVK 168
D K ++ +F A V+H AA+ V G E L + N T +LEA + VK
Sbjct: 59 DIKDLSFLFRACQGVSVVIHTAAIVDVFGPPNYEEL---EEVNVNGTQAVLEACVQNNVK 115
Query: 169 TLIYSSTCATYGEPDKMPIT----ESTPQKPIN--PYGKAKKMSEDIII 211
L+Y+S+ G K E TP + + PY +K ++E+I++
Sbjct: 116 RLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENIVL 164
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 41/153 (26%), Positives = 55/153 (35%), Gaps = 37/153 (24%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGG G+IG RL K + VTI L+R P PG
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTI---LTRS------------PPPGANTKWEGYKP 45
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNI----------TSNTLVILEA 161
A + DAV++ A GE + R+ T+ LV EA
Sbjct: 46 WAGEDAD--SLEGADAVINLA-----GEPIADK-RWTEERKQEIRDSRIDTTRLLV--EA 95
Query: 162 MAA--HKVKTLIYSSTCATYGEPDKMPITESTP 192
+AA K K I +S YG + TE
Sbjct: 96 IAAAEQKPKVFISASAVGYYGPSEDREYTEEDS 128
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 33/151 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGG G IG RL K ++VTI L+R K Q L P + + AD
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTI---LTR---RPPKASQNLHPNVTLWEGL-ADAL 53
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN--------TLVILEAMA 163
DAV++ A GE E R+ T ++E +A
Sbjct: 54 TL----------GIDAVINLA-----GEPIAER-RWTEKQKEEIRQSRINTTEKLVELIA 97
Query: 164 AH--KVKTLIYSSTCATYGEPDKMPITESTP 192
A K K LI +S YG +TE +P
Sbjct: 98 ASETKPKVLISASAVGYYGHSGDRVVTEESP 128
|
Length = 297 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG A IG A L + YRV + N S A ++ EL + ADL
Sbjct: 3 ALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEA--EAQRLKDELNALRNSAVLVQADLS 60
Query: 112 DAKAVNKIF--AENAF---DAVMHFAAVAYVGE 139
D A + A AF D +++ A+ Y
Sbjct: 61 DFAACADLVAAAFRAFGRCDVLVNNASAFYPTP 93
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++TG A IG A RL D + + + D A +QE+ + AD+
Sbjct: 5 AIITGAAQGIGRAIAERLAADGFNIVLADLNL--EEAAKSTIQEISEAGYNAVAVGADVT 62
Query: 112 DAKAVNKIFAENA-----FDAVMHFAAVA 135
D V + + FD +++ A +A
Sbjct: 63 DKDDVEALIDQAVEKFGSFDVMVNNAGIA 91
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 43 PRHEPGVTHV-LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG 101
P+ +P V LVTG AG IG A RL + V + D + A + P
Sbjct: 415 PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADL----DEEAAEAAAAELGGPD 470
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHF------------AAVAYVGESTLEPLRYYH 149
+ + D+ D AV F E A + F A + E++ E R
Sbjct: 471 RALGVACDVTDEAAVQAAFEE----AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSF 526
Query: 150 NI--TSNTLVILEAMA 163
++ T + LV EA+
Sbjct: 527 DVNATGHFLVAREAVR 542
|
Length = 681 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIV----DNLSRGNMGAVKVLQELFPQPGQ-LQ 104
HVL+TGG+ IG A L+K+ V IV L AV+ ++ GQ +
Sbjct: 2 KHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLE----EAVEEIEAEANASGQKVS 57
Query: 105 FIYADLGDAKAVNKIFAENAF-----DAVMHFAAVAYVGE-STLEPLRYYHNITSNTL-- 156
+I ADL D + V + FA+ D V++ A ++ G L + + N
Sbjct: 58 YISADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGS 117
Query: 157 -----VILEAMAAHKVKTLIY-SSTCATYG 180
+L M + +++ SS A G
Sbjct: 118 LNVAHAVLPLMKEQRPGHIVFVSSQAALVG 147
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V V G G+IG + RL K +V + + V+ +L GQ+ F+ DL
Sbjct: 3 VTVFGATGFIGRYVVNRLAKRGSQVIVPYR-CEAYARRLLVMGDL----GQVLFVEFDLR 57
Query: 112 DAKAVNKIF 120
D +++ K
Sbjct: 58 DDESIRKAL 66
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 32/200 (16%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGA------VKVLQELFPQPGQLQ 104
VL+TG G++G++ LLK I L R + L+E
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIY-CLVRAKDEEAALERLIDNLKEYGLNLWDEL 59
Query: 105 F------IYADLGDAKAV--NKIFAE--NAFDAVMHFAA-VAYVGE-STLEPLRYYHNIT 152
+ DL + + E D ++H A V +V L+P N+
Sbjct: 60 ELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELKPA----NVL 115
Query: 153 SNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI-------NPYGKAKKM 205
T +L+ A K+K L + ST + + + + + + N Y ++K +
Sbjct: 116 G-TKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWV 174
Query: 206 SEDIIIDFSKTTNMAVMILR 225
+E ++ + + + V I+R
Sbjct: 175 AEKLLREAAN-RGLPVAIIR 193
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG + IG AL+L K+ +V I GA +V++EL + + D+
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVII--TYRSSEEGAEEVVEELKAYGVKALGVVCDVS 58
Query: 112 DAKAVNKIFAE 122
D + V + E
Sbjct: 59 DREDVKAVVEE 69
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+TGG+G +G A+RL D V ++D RG A V + G+ + D+
Sbjct: 9 VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDV 68
Query: 111 GDAKAVNKIFAENAFDA-VMHFAAV 134
D A A DA V F +
Sbjct: 69 RDFAA-----TRAALDAGVEEFGRL 88
|
Length = 249 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
LVTGGA IG A RL KD + V + D A + +E+ G+ D+ D
Sbjct: 4 LVTGGAQGIGKGIAERLAKDGFAVAVAD---LNEETAKETAKEINQAGGKAVAYKLDVSD 60
Query: 113 AKAVNKIFAENA-----FDAVMHFAAVAYV 137
V + A FD +++ A VA +
Sbjct: 61 KDQVFSAIDQAAEKFGGFDVMVNNAGVAPI 90
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 9e-04
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG + IG ALRL + +V + D R A + ++E+ G + AD+
Sbjct: 3 ALVTGASRGIGRAIALRLAAEGAKVAVTD---RSEEAAAETVEEIKALGGNAAALEADVS 59
Query: 112 DAKAVNKIFAE 122
D +AV + +
Sbjct: 60 DREAVEALVEK 70
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG A +G+ A L + V D L+ A ++ L G+ I ADL
Sbjct: 10 ALVTGAARGLGAAFAEALAEAGATVAFNDGLAA---EARELAAALEAAGGRAHAIAADLA 66
Query: 112 DAKAVNKIF--AENAF---DAVMHFAAVA 135
D +V + F A A D +++ A +
Sbjct: 67 DPASVQRFFDAAAAALGGLDGLVNNAGIT 95
|
Length = 250 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 32/165 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VLV G G +G H LL Y+V +V + S+ + + + DL
Sbjct: 2 VLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAE----------KLEAAGAEVVVGDL 51
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLR--YYHNITSNTLVILEAMAAHKVK 168
DA+++ A DAV+ AA + G+ Y NI +++A VK
Sbjct: 52 TDAESLAA--ALEGIDAVI-SAAGSG-GKGGPRTEAVDYDGNIN-----LIDAAKKAGVK 102
Query: 169 TLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID 212
+ SS A + PY AK+ +ED +
Sbjct: 103 RFVLVSSIGADKPSHPLEALG---------PYLDAKRKAEDYLRA 138
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQ--FIYA 108
LVTG + IG A L ++ RV + R A + L + G + + A
Sbjct: 7 VALVTGASSGIGRAIARALAREGARVVVAA--RRSEEEAAEALAAAIKEAGGGRAAAVAA 64
Query: 109 DLGD-AKAVNKIFAE 122
D+ D ++V + A
Sbjct: 65 DVSDDEESVEALVAA 79
|
Length = 251 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYAD 109
VL+TGG G +G A L + R ++ + GA +++ EL G ++ D
Sbjct: 2 TVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAEL-EALGAEVTVAACD 60
Query: 110 LGD----AKAVNKIFAENA-FDAVMHFAAV 134
+ D A + + A D V+H A V
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGV 90
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
LVTG A IG A+RL D V +VD A + + G+ + D+
Sbjct: 8 VALVTGAARGIGRAIAVRLAADGAEVIVVD---ICGDDAAATAELVEAAGGKARARQVDV 64
Query: 111 GDAKAVNKIFA--ENAF---DAVMHFAAVA 135
D A+ A F D ++ A +
Sbjct: 65 RDRAALKAAVAAGVEDFGRLDILVANAGIF 94
|
Length = 251 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG + IG A RL V I N + GA ++ E+ G+ + D+
Sbjct: 8 ALVTGASRGIGRAIAERLAAQGANVVI--NYASSEAGAEALVAEIGALGGKALAVQGDVS 65
Query: 112 DAKAVNKIFAE 122
DA++V + E
Sbjct: 66 DAESVERAVDE 76
|
Length = 248 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV------------LQELFPQ 99
VLVTG G+ GS +L LL +GA +V L EL
Sbjct: 7 VLVTGHTGFKGSWLSLWLL---------------ELGA-EVYGYSLDPPTSPNLFELLNL 50
Query: 100 PGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVIL 159
+++ + D+ DA + K AE + V H AA V +S +PL + T+ +L
Sbjct: 51 AKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLL 110
Query: 160 EAMAAHK-VKTLI 171
EA+ A VK ++
Sbjct: 111 EAIRAIGSVKAVV 123
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 69/295 (23%), Positives = 119/295 (40%), Gaps = 44/295 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+ G G+IG H + R+L+ + + V +D M + L +L P ++ F D+
Sbjct: 4 VLILGVNGFIGHHLSKRILETTDWEVYGMD------MQTDR-LGDLVNHP-RMHFFEGDI 55
Query: 111 GDAKAVNKIFAE---NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
+NK + E D ++ A+A +PLR + L I+ + +
Sbjct: 56 T----INKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG- 110
Query: 168 KTLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMA 220
K L++ ST YG +P+ P+ KP Y +K++ + +I + +
Sbjct: 111 KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEEGLN 170
Query: 221 VMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK--IRGTDYNTAD 278
+ R FN IG P L I ++R + L +RG + D
Sbjct: 171 FTLFRPFNWIG------------PGLDS---IYTPKEGSSRVVTQFLGHIVRGEPISLVD 215
Query: 279 -GTCVRDYIDVTDLVDAHVLALANAKPGKVG-IYNVGT-GKGRSVKEFVEACKKA 330
G+ R + D+ D +DA + + N G IYN+G SV+E +
Sbjct: 216 GGSQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLEL 270
|
Length = 347 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQ 102
R P + + +TG + +G AA LL + V ++ S+ K PG
Sbjct: 1 TRSPPPMKRIFITGSSDGLGLAAARTLLHQGHEV-VLHARSQKRAADAKAA-----CPGA 54
Query: 103 LQFIYADLGDAKAVNKIFAE-NA---FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVI 158
+ DL K+ + NA FDAV+H A + G + P + + ++
Sbjct: 55 AGVLIGDLSSLAETRKLADQVNAIGRFDAVIHNAGI-LSGPNRKTPDTGIPAMVAVNVLA 113
Query: 159 LEAMAA--HKVKTLIYSST 175
+ A + K LIY S+
Sbjct: 114 PYVLTALIRRPKRLIYLSS 132
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 31/188 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
+L+TGG G G+ R L R+ D + +M ++ + +L+F
Sbjct: 7 LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDM------RKKYNNS-KLKFYIG 59
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ D +++ + A D + H AA+ V P+ T +LEA A+ VK
Sbjct: 60 DVRDYRSI--LNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVK 117
Query: 169 TLIYSST-CATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL--- 224
++ ST A Y PIN G +K M E +++ S+ + + ++
Sbjct: 118 RVVCLSTDKAVY---------------PINAMGISKAMMEKVMVAKSRNVDSSKTVICGT 162
Query: 225 RYFNVIGS 232
RY NV+ S
Sbjct: 163 RYGNVMAS 170
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V++TG + +G +AA L K + V + R A QEL P I+ DLG
Sbjct: 9 VIITGASSGVGLYAAKALAKRGWHVIMA---CRNLKKAEAAAQELGIPPDSYTIIHIDLG 65
Query: 112 DAKAVNKIFAEN------AFDAVMHFAAV 134
D +V + F ++ DA++ AAV
Sbjct: 66 DLDSVRR-FVDDFRALGKPLDALVCNAAV 93
|
Length = 322 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+ +G+ A ++ RV + N + A + EL + LQ AD+
Sbjct: 8 VLVTGGSRGLGAAIARAFAREGARVVV--NYHQSEDAAEALADELGDRAIALQ---ADVT 62
Query: 112 DAKAVNKIFAENAFDAVMHFAA 133
D + V +FA A HF
Sbjct: 63 DREQVQAMFAT----ATEHFGK 80
|
Length = 253 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTG A IG A L + RV VD R ++++ +L D+
Sbjct: 1 VLVTGAAQGIGYAVARALAEAGARVAAVD---RNFEQLLELVADLRRYGYPFATYKLDVA 57
Query: 112 DAKAVNK----IFAENA-FDAVMHFAAVAYVGE 139
D+ AV++ + E D +++ A + +G
Sbjct: 58 DSAAVDEVVQRLEREYGPIDVLVNVAGILRLGA 90
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++TGGA IG A LLK +V I+D N GA LQ + P + F+ D+
Sbjct: 2 VAIITGGASGIGLATAKLLLKKGAKVAILD--RNENPGAAAELQAINP-KVKATFVQCDV 58
Query: 111 GD----AKAVNKIFAE 122
A A K +
Sbjct: 59 TSWEQLAAAFKKAIEK 74
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVT + IG A L ++ RV I +R + EL + + ADL
Sbjct: 4 ALVTAASSGIGLAIARALAREGARVAI---CARNRENLERAASELRAGGAGVLAVVADLT 60
Query: 112 DAKAVNKIFAE 122
D + ++++ +
Sbjct: 61 DPEDIDRLVEK 71
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 38/200 (19%)
Query: 54 VTGGAGYIGSHAALRLLKDSYRVTIV----------------DNLSRGNMG-AVKVLQEL 96
+TG G++G +LL+ + V I L + + +K L+ +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 97 FPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYY--HNITSN 154
P G L +LG + + AE D ++H AA + +EP N+
Sbjct: 61 IPVAGDL--SEPNLGLSDEDFQELAEEV-DVIIHNAATV----NFVEPYSDLRATNVLG- 112
Query: 155 TLVILEAMAAHKVKTLIYSSTCATYG-------EPDKMP--ITESTPQKPINPYGKAKKM 205
T +L K + ST G E + N Y ++K +
Sbjct: 113 TREVLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWL 172
Query: 206 SEDIIIDFSKTTNMAVMILR 225
+E ++ + + + V+I R
Sbjct: 173 AEQLVREAAG--GLPVVIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG IG A RL++D ++V IVD N A +L G+ + AD+
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE----TAQAAADKLSKDGGKAIAVKADVS 61
Query: 112 DAKAVNKIFAENA-----FDAVMHFAAVA 135
D V + + V++ A VA
Sbjct: 62 DRDQVFAAVRQVVDTFGDLNVVVNNAGVA 90
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.98 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.98 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.98 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.95 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.95 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.95 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.93 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.93 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.92 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.92 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.92 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.92 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.91 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.91 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.91 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.9 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.9 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.9 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.89 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.89 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.89 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.89 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.89 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.88 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.88 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.88 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.87 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.87 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.87 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.86 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.85 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.85 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.85 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.85 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.85 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.85 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.84 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.84 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.84 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.84 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.84 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.84 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.83 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.83 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.83 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.83 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.83 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.82 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.82 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.82 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.82 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.82 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.82 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.82 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.81 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.81 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.81 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.81 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.8 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.8 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.79 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.79 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.79 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.79 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.78 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.78 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.78 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.78 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.77 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.77 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.77 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.77 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.76 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.76 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.76 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.76 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.76 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.75 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.75 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.75 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.75 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.74 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.74 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.73 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.72 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.72 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.71 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.71 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.71 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.71 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.71 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.71 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.7 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.7 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.69 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.68 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.67 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.66 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.65 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.65 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.65 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.64 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.64 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.63 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.61 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.61 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.59 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.59 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.58 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.57 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.54 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.53 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.47 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.47 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.46 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.46 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.46 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.44 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.43 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.43 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.42 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.41 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.39 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.37 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.32 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.31 | |
| PLN00106 | 323 | malate dehydrogenase | 99.19 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.15 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 99.1 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.09 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.08 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.04 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.93 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.9 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.85 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.81 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.78 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.72 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.68 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.66 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.65 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.61 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.51 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.43 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.42 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.3 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.29 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.17 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.14 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.11 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.04 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.01 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.96 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.94 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.92 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.88 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.85 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.83 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.79 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.79 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.78 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.72 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.7 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.66 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.65 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.64 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.62 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.6 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.57 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.55 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 97.55 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.53 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.52 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.47 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.47 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.41 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.4 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.39 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.37 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.36 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.36 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.36 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.35 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.34 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.34 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.34 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.33 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 97.33 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.32 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.31 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.29 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.28 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.26 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.25 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.23 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.21 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.16 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.15 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.1 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.09 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.07 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.07 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.06 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.05 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.04 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 97.03 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 97.02 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.01 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.0 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.99 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.99 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.98 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.98 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.97 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.96 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.95 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.94 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.92 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.92 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.89 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.89 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.88 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.87 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.83 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.8 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 96.8 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.8 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.78 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.77 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.73 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.73 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.69 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.65 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.63 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.63 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.58 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.58 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.58 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.56 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.52 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.51 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.45 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.43 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.42 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.42 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.42 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.38 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.35 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.34 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.33 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.31 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.3 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.3 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.29 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.28 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.25 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.25 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.2 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.2 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.2 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.19 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.17 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.14 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 96.12 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.11 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.08 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.07 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 96.06 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.05 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.01 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.9 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.88 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.87 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.86 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.85 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.84 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 95.83 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.82 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.82 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.8 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.8 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.78 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.76 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.73 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.71 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.66 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 95.65 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.64 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.63 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.62 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.62 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.6 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.58 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.57 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.57 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.55 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 95.54 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.53 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.47 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.42 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 95.41 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 95.4 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.39 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.39 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.37 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.36 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.34 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 95.34 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.33 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.33 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.32 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.32 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.31 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 95.3 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 95.3 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.29 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.29 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.23 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.23 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.2 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 95.2 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.17 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 95.15 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.15 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.15 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 95.14 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.13 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.12 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 95.12 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.08 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 95.08 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.06 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.06 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.02 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=411.59 Aligned_cols=327 Identities=48% Similarity=0.753 Sum_probs=303.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+||||||+||||+|.+.+|++.|++|+++++.+......... ..+.++.||+.|.+.+.+.+++.++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~--------~~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLK--------LQFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhh--------ccCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 6899999999999999999999999999999877655433221 11789999999999999999999999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+||...+.++..+|...++.|+.+|.+|+++|++.++++|||.||+++||.+...|++|+.|..|.||||.||++.|++
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~i 152 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEI 152 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++.+++..++++++||.+++.|..+++.+|+.+.+.. .+++.+.+.+.+..+.+.++|..++..||...||||||.
T Consensus 153 L~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~t----hLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~ 228 (329)
T COG1087 153 LRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGAT----LLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVD 228 (329)
T ss_pred HHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcc----hHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehh
Confidence 9999999999999999999999999999999888775 899999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceecc
Q 016208 290 DLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368 (393)
Q Consensus 290 Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 368 (393)
|+|+|++.+++.-. .+...+||+++|+-.|+.|+++++++..|.+++.+..+.+++++..++.|++|+++.|||+|+++
T Consensus 229 DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~ 308 (329)
T COG1087 229 DLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYD 308 (329)
T ss_pred HHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccC
Confidence 99999999988422 22226999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH-hccCCC
Q 016208 369 DLQGSLQIAWRWQK-THINGY 388 (393)
Q Consensus 369 ~~~e~l~~~~~~~~-~~~~~~ 388 (393)
+++++++....|.. +++++|
T Consensus 309 ~L~~ii~~aw~W~~~~~~~g~ 329 (329)
T COG1087 309 DLEDIIKDAWDWHQQRHGDGY 329 (329)
T ss_pred CHHHHHHHHHHHhhhhcCCCC
Confidence 99999999999998 666654
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=366.60 Aligned_cols=316 Identities=28% Similarity=0.396 Sum_probs=283.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|++|||||.||||+++++.++++. .+|+.++...-. ...+.+..+.. .++..++++|+.|.+.+.+++++.++|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYA--gn~~~l~~~~~-~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYA--GNLENLADVED-SPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccccc--CCHHHHHhhhc-CCCceEEeccccCHHHHHHHHHhcCCCe
Confidence 689999999999999999999884 457887764321 12233333322 3689999999999999999998779999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceeecCCCC--CCCCCCCCCCCCChHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATYGEPDK--MPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vyg~~~~--~~~~E~~~~~p~~~Y~~sK~ 204 (393)
|+|+|+-++++.+-..|....++|+.||.+|||++++...+ ||+|+||.-|||.-.. ..++|++|.+|.+||+.||+
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKA 157 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKA 157 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhh
Confidence 99999999999888999999999999999999999999754 8999999999997643 37999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.++.++++|...+|++++|.|+++-|||.+.+. .++|.++..++.+++ ++++| +|.+.||
T Consensus 158 asD~lVray~~TYglp~~ItrcSNNYGPyqfpE-------------KlIP~~I~nal~g~~-lpvYG------dG~~iRD 217 (340)
T COG1088 158 ASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE-------------KLIPLMIINALLGKP-LPVYG------DGLQIRD 217 (340)
T ss_pred hHHHHHHHHHHHcCCceEEecCCCCcCCCcCch-------------hhhHHHHHHHHcCCC-Cceec------CCcceee
Confidence 999999999999999999999999999986543 899999999999999 99999 9999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-----eEEccCCCCCCcceecCHHHHHh
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-----VEYLSRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~ 359 (393)
|+||+|=|+|+..++.+...+ ++|||+++...+..|+++.|++.+|++.+ +.++.++++.-.++.+|.+|+++
T Consensus 218 Wl~VeDh~~ai~~Vl~kg~~G--E~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~ 295 (340)
T COG1088 218 WLYVEDHCRAIDLVLTKGKIG--ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKR 295 (340)
T ss_pred eEEeHhHHHHHHHHHhcCcCC--ceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhh
Confidence 999999999999999987775 79999999999999999999999999887 88888999988899999999999
Q ss_pred hCCCceeccCHHHHHHHHHHHHHhccCCCCCC
Q 016208 360 ELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~~ 391 (393)
+|||.|++ ++++||+++++||.++.+|+..-
T Consensus 296 eLgW~P~~-~fe~GlrkTv~WY~~N~~Ww~~l 326 (340)
T COG1088 296 ELGWRPQE-TFETGLRKTVDWYLDNEWWWEPL 326 (340)
T ss_pred hcCCCcCC-CHHHHHHHHHHHHHhchHHHhhh
Confidence 99999998 89999999999999999887653
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=381.79 Aligned_cols=322 Identities=25% Similarity=0.353 Sum_probs=260.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhh-hcC-CCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQE-LFP-QPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
..||+|||||||||||++|+++|+++|++|++++|...........+.. ... ...++.++.+|+.+.+.+.+++ .+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~--~~ 90 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC--KN 90 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh--hC
Confidence 4568999999999999999999999999999999854432211111110 000 0135789999999999999999 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
+|+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.++||.....+..|+.+..|.++|+.+|.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~ 170 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKY 170 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhHHHH
Confidence 99999999976555455677888999999999999999999999999999999999766667788888889999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
++|.++..|++..+++++++||+++|||++.+... .+.+++.++..+..+.+ +.++| +|.+.++
T Consensus 171 ~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~---------~~~~i~~~~~~~~~~~~-i~~~g------~g~~~rd 234 (348)
T PRK15181 171 VNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGA---------YSAVIPRWILSLLKDEP-IYING------DGSTSRD 234 (348)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCc---------cccCHHHHHHHHHcCCC-cEEeC------CCCceEe
Confidence 99999999988889999999999999997542110 01467777777777777 77877 8999999
Q ss_pred cccHHHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHHHhCCC------cceEEccCCCCCCcceecCHHHH
Q 016208 285 YIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVN------IKVEYLSRRPGDYAEVYSDPSKI 357 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~~~g~~------~~~~~~~~~~~~~~~~~~d~~k~ 357 (393)
|+|++|+|++++.++..... ..+++|||++++.+|+.|+++.+.+.++.. ..+...+..+.+.....+|++|+
T Consensus 235 ~i~v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 314 (348)
T PRK15181 235 FCYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKI 314 (348)
T ss_pred eEEHHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHH
Confidence 99999999999987764321 234799999999999999999999988732 12222333444555678999999
Q ss_pred HhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 358 RDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 358 ~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
++.|||+|++ +++|+|+++++|++.+.+.
T Consensus 315 ~~~lGw~P~~-sl~egl~~~~~w~~~~~~~ 343 (348)
T PRK15181 315 KTFLSYEPEF-DIKEGLKQTLKWYIDKHST 343 (348)
T ss_pred HHHhCCCCCC-CHHHHHHHHHHHHHHhccc
Confidence 9999999999 9999999999999988665
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=360.96 Aligned_cols=341 Identities=42% Similarity=0.706 Sum_probs=273.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+.+++|+|||||||||++|+++|+++|++|++++|..+........+.... ....++.++.+|+.+++++.+++++.++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 345799999999999999999999999999999875433222112222211 1124688999999999999999876689
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|+|||+|+.........++...++.|+.++.+++++|++.+++++|++||.++||.....+++|+.+..|.++|+.+|..
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~ 162 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLF 162 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 99999999764444445778899999999999999999989899999999999987766789999999999999999999
Q ss_pred HHHHHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 206 SEDIIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 206 ~E~~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
+|++++.++.. .+++++++|++++||+++.+.+|+.+.... ..+++.+.....+..+.+.++|.....++|.+.++
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 239 (352)
T PLN02240 163 IEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIP---NNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRD 239 (352)
T ss_pred HHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCc---chHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEe
Confidence 99999988754 579999999999999876655544322100 13445554444444444777775555568899999
Q ss_pred cccHHHHHHHHHHHHhcC---CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhC
Q 016208 285 YIDVTDLVDAHVLALANA---KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDEL 361 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~---~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 361 (393)
|+|++|+|++++.+++.. ....+++||+++++++|++|+++.+.+.+|.+.++...+..+.+.....+|++|++++|
T Consensus 240 ~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 319 (352)
T PLN02240 240 YIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEKEL 319 (352)
T ss_pred eEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHHHHh
Confidence 999999999999888642 12234799999999999999999999999988887766666666666778999999999
Q ss_pred CCceeccCHHHHHHHHHHHHHhccCCCCCC
Q 016208 362 NWTARFTDLQGSLQIAWRWQKTHINGYGSR 391 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~~~~~~~~~~ 391 (393)
||+|++ +++|+|+++++|+++++..|+++
T Consensus 320 g~~p~~-~l~~~l~~~~~~~~~~~~~~~~~ 348 (352)
T PLN02240 320 GWKAKY-GIDEMCRDQWNWASKNPYGYGSS 348 (352)
T ss_pred CCCCCC-CHHHHHHHHHHHHHhCccccCCC
Confidence 999999 89999999999999999999886
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=339.27 Aligned_cols=339 Identities=52% Similarity=0.837 Sum_probs=309.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++||||||.||||+|.+.+|+++|++|.+++...+........++++.....++.++.+|+.|.+.++++++..++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 37999999999999999999999999999999988877777777777777678999999999999999999999999999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC-CCChHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK-PINPYGKAKKMSE 207 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~-p~~~Y~~sK~~~E 207 (393)
+|+|+.....++..++...+..|+.++.+|+|.|++.+++.+||.||+.+||.+..-|++|+.|.. |.++||.+|..+|
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~iE 161 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIE 161 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHHH
Confidence 999999888888889999999999999999999999999999999999999999989999999998 9999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+++..+....++.++.||.++++|..+.+..++.+ +.-..++.+...+-+....|.+.+.|..+..-+|+..|+|||
T Consensus 162 ~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p---~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~ 238 (343)
T KOG1371|consen 162 EIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAP---LGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIH 238 (343)
T ss_pred HHHHhhhccccceEEEEEeccccCccccCccCCCC---ccCcccccccccchhhcccccceeecCcccccCCCeeeccee
Confidence 99999999988999999999999977777766655 222336777777777777777899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCcee
Q 016208 288 VTDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTAR 366 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 366 (393)
+-|.|+.+..++..... ...++||++++...++.++..++++..|.+++....+.+.++....+.++++++++|||+|.
T Consensus 239 v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elgwk~~ 318 (343)
T KOG1371|consen 239 VLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELGWKAK 318 (343)
T ss_pred eEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhCCccc
Confidence 99999999999996543 34469999999999999999999999999999988888999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhccCCCCCC
Q 016208 367 FTDLQGSLQIAWRWQKTHINGYGSR 391 (393)
Q Consensus 367 ~~~~~e~l~~~~~~~~~~~~~~~~~ 391 (393)
+ +++++++++++|..+++.+|+.+
T Consensus 319 ~-~iee~c~dlw~W~~~np~gy~~~ 342 (343)
T KOG1371|consen 319 Y-GLQEMLKDLWRWQKQNPSGYDTK 342 (343)
T ss_pred c-CHHHHHHHHHHHHhcCCCcCCCC
Confidence 9 89999999999999999999865
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-47 Score=365.31 Aligned_cols=306 Identities=25% Similarity=0.389 Sum_probs=253.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..|||||||||||||++|+++|+++|++|++++|....... .+..... ..+++++.+|+.+.. + .++|+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~---~~~~~~~-~~~~~~~~~Di~~~~-----~--~~~D~ 187 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKE---NLVHLFG-NPRFELIRHDVVEPI-----L--LEVDQ 187 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHh---Hhhhhcc-CCceEEEECcccccc-----c--cCCCE
Confidence 44899999999999999999999999999999875432211 1111111 246788899987652 4 57999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC-----CCCCCChHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST-----PQKPINPYGKA 202 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~s 202 (393)
|||+|+...+..+..++...++.|+.++.+|+++|++.++ ++||+||.+|||.....+.+|+. |..|.+.|+.+
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~S 266 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 266 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHH
Confidence 9999997655444567888999999999999999999886 89999999999977666777763 66778899999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccc
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 282 (393)
|..+|++++.+++..+++++++||+++|||++... .+.++..++..+..+++ +.++| ++++.
T Consensus 267 K~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~-----------~~~~i~~~i~~~l~~~~-i~v~g------~g~~~ 328 (436)
T PLN02166 267 KRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLD-----------DGRVVSNFVAQTIRKQP-MTVYG------DGKQT 328 (436)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCC-----------ccchHHHHHHHHhcCCC-cEEeC------CCCeE
Confidence 99999999999888899999999999999974311 11567777777777777 77777 89999
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCC
Q 016208 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 362 (393)
++|+|++|+++++..+++... .++||+++++.+|+.|+++.+.+.+|.+.++...+....+.....+|++|++++||
T Consensus 329 rdfi~V~Dva~ai~~~~~~~~---~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LG 405 (436)
T PLN02166 329 RSFQYVSDLVDGLVALMEGEH---VGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLN 405 (436)
T ss_pred EeeEEHHHHHHHHHHHHhcCC---CceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcC
Confidence 999999999999999987543 25999999999999999999999999887777766666666677899999999999
Q ss_pred CceeccCHHHHHHHHHHHHHhccCC
Q 016208 363 WTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
|+|++ +++++|+++++||+++..+
T Consensus 406 w~P~~-sl~egl~~~i~~~~~~~~~ 429 (436)
T PLN02166 406 WEPKI-SLREGLPLMVSDFRNRILN 429 (436)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHhcC
Confidence 99999 8999999999999887654
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=352.18 Aligned_cols=333 Identities=41% Similarity=0.686 Sum_probs=267.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+++|++|++++|..+........+.... ..++.++.+|+.|.+++.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 589999999999999999999999999999875443322211222211 135778899999999999998656899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-CCCChHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSED 208 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~~E~ 208 (393)
|+|+..........+...++.|+.++.+++++|++.+++++|++||.++||.....+++|+++. .|.++|+.+|..+|+
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~ 158 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ 158 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHH
Confidence 9998765433344567789999999999999999999999999999999997666688999886 789999999999999
Q ss_pred HHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 209 IIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 209 ~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+++.+++. .+++++++|++++||+.+.+.+|+.+... ...+++.+........+.+.++|..+.+++|.+.++|+|
T Consensus 159 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 235 (338)
T PRK10675 159 ILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGI---PNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_pred HHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCC---hhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEE
Confidence 99998765 48999999999999997666655432210 013455555555544444777776666667889999999
Q ss_pred HHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCcee
Q 016208 288 VTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTAR 366 (393)
Q Consensus 288 v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 366 (393)
++|+|++++.+++.. ....+++||+++++.+|+.|+++.+.+.+|.+.++...+....+....++|++|+++.+||+|+
T Consensus 236 v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~p~ 315 (338)
T PRK10675 236 VMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_pred HHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCCCc
Confidence 999999999998752 1222369999999999999999999999998877766665555566677899999999999999
Q ss_pred ccCHHHHHHHHHHHHHhccCCC
Q 016208 367 FTDLQGSLQIAWRWQKTHINGY 388 (393)
Q Consensus 367 ~~~~~e~l~~~~~~~~~~~~~~ 388 (393)
+ +++++|+++++|+++++.+|
T Consensus 316 ~-~~~~~~~~~~~~~~~~~~~~ 336 (338)
T PRK10675 316 R-TLDEMAQDTWHWQSRHPQGY 336 (338)
T ss_pred C-cHHHHHHHHHHHHHhhhhcc
Confidence 9 89999999999999987765
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=354.32 Aligned_cols=312 Identities=25% Similarity=0.358 Sum_probs=249.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEE-EeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|++|||||||||||++|++.|+++|++|++ ++|.... .. ...+.... ...++.++.+|++|.+++.++++..++|+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~ 77 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GN-LMSLAPVA-QSERFAFEKVDICDRAELARVFTEHQPDC 77 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cc-hhhhhhcc-cCCceEEEECCCcChHHHHHHHhhcCCCE
Confidence 689999999999999999999999987654 4432211 11 11111111 12367889999999999999996557999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc---------CCcEEEEeecceeecCCC--CCCCCCCCCCCCC
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH---------KVKTLIYSSTCATYGEPD--KMPITESTPQKPI 196 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~~~~V~~SS~~vyg~~~--~~~~~E~~~~~p~ 196 (393)
|||+||..........+...+++|+.++.+++++|.+. +++++|++||.++||... ..+++|+.+..|.
T Consensus 78 Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~ 157 (355)
T PRK10217 78 VMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPS 157 (355)
T ss_pred EEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCC
Confidence 99999976544344567889999999999999999862 467999999999998542 3468999998999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
++|+.||.++|.+++.++++.+++++++||+++|||+.... .+++.++.....+.+ ++++|
T Consensus 158 s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-------------~~~~~~~~~~~~~~~-~~~~g----- 218 (355)
T PRK10217 158 SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-------------KLIPLMILNALAGKP-LPVYG----- 218 (355)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-------------cHHHHHHHHHhcCCC-ceEeC-----
Confidence 99999999999999999888999999999999999974311 566777777777766 77777
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc------------eEEccCCC
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK------------VEYLSRRP 344 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~------------~~~~~~~~ 344 (393)
+|++.++|+|++|+|+++..+++.... +++|||++++.+|+.|+++.+++.+|...+ ....+..+
T Consensus 219 -~g~~~~~~i~v~D~a~a~~~~~~~~~~--~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T PRK10217 219 -NGQQIRDWLYVEDHARALYCVATTGKV--GETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRP 295 (355)
T ss_pred -CCCeeeCcCcHHHHHHHHHHHHhcCCC--CCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCC
Confidence 899999999999999999999886433 379999999999999999999999885321 11122233
Q ss_pred CCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 345 ~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
.....+.+|++|++++|||+|++ +++|+|+++++||+++.+
T Consensus 296 ~~~~~~~~d~~k~~~~lg~~p~~-~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 296 GHDLRYAIDASKIARELGWLPQE-TFESGMRKTVQWYLANES 336 (355)
T ss_pred CCCcccccCHHHHHHhcCCCCcC-cHHHHHHHHHHHHHhCHH
Confidence 34456788999999999999999 899999999999998865
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=352.38 Aligned_cols=314 Identities=19% Similarity=0.300 Sum_probs=248.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC-CHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG-DAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~d 126 (393)
||+|||||||||||++|+++|+++ |++|++++|..... ..+.. ..+++++.+|+. +.+.+.+++ .++|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~-------~~~~~-~~~~~~~~~Dl~~~~~~~~~~~--~~~d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRL-------GDLVN-HPRMHFFEGDITINKEWIEYHV--KKCD 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHH-------HHhcc-CCCeEEEeCCCCCCHHHHHHHH--cCCC
Confidence 689999999999999999999987 69999998743211 11111 146899999998 778888888 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-------CCCChH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-------KPINPY 199 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-------~p~~~Y 199 (393)
+|||+|+...+.....++...+++|+.++.+++++|++.+ +++||+||..+||.....+++|+.+. .|.++|
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y 149 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY 149 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchH
Confidence 9999999765544556788889999999999999999988 69999999999997655567776532 467799
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 279 (393)
+.+|..+|++++.++...+++++++||+++|||+......... ....++..++..+..+.+ +.+.+ +|
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~-~~~~~------~g 217 (347)
T PRK11908 150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKE-----GSSRVVTQFLGHIVRGEP-ISLVD------GG 217 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCcccc-----CCcchHHHHHHHHhCCCc-eEEec------CC
Confidence 9999999999999998899999999999999997543111100 012577788888888877 77776 78
Q ss_pred ccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC-CcccHHHHHHHHHHHhCCCcce---------EEccC------
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG-KGRSVKEFVEACKKATGVNIKV---------EYLSR------ 342 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~-~~~s~~el~~~i~~~~g~~~~~---------~~~~~------ 342 (393)
++.++|+|++|++++++.+++.+.. ..+++||++++ +.+|++|+++.|.+.+|..... ...+.
T Consensus 218 ~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (347)
T PRK11908 218 SQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGK 297 (347)
T ss_pred ceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCc
Confidence 9999999999999999999986532 23479999986 5799999999999999854332 11111
Q ss_pred CCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 343 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
..........|++|+++.|||+|++ +++++++++++|++++..
T Consensus 298 ~~~~~~~~~~d~~k~~~~lGw~p~~-~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 298 GYQDVQNRVPKIDNTMQELGWAPKT-TMDDALRRIFEAYRGHVA 340 (347)
T ss_pred CcchhccccCChHHHHHHcCCCCCC-cHHHHHHHHHHHHHHHHH
Confidence 0112335567899999999999999 899999999999987643
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=348.31 Aligned_cols=314 Identities=23% Similarity=0.260 Sum_probs=248.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhh-hhcC-CCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQ-ELFP-QPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|+|||||||||||++|+++|+++|++|++++|..... ......+. .... ...+++++.+|++|.+++.++++..++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999998864321 11111110 0000 0136889999999999999999766789
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc---EEEEeecceeecCCCCCCCCCCCCCCCCChHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK---TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~---~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
+|||+|+......+...+...+++|+.++.+++++|++.+++ ++||+||.++||.....+.+|+.+..|.++|+.||
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 160 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAK 160 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHHH
Confidence 999999986554444556778889999999999999988753 89999999999976666789999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
..+|.+++.++++.+++++++|+.++|||+....+ . ...+..++..+..+.+.....| +|++.+
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~g------~g~~~r 224 (343)
T TIGR01472 161 LYAHWITVNYREAYGLFAVNGILFNHESPRRGENF----V------TRKITRAAAKIKLGLQEKLYLG------NLDAKR 224 (343)
T ss_pred HHHHHHHHHHHHHhCCceEEEeecccCCCCCCccc----c------chHHHHHHHHHHcCCCCceeeC------CCcccc
Confidence 99999999998888999999999999999643110 0 0233444455555543234445 889999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce-------------------EE--ccC
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV-------------------EY--LSR 342 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~-------------------~~--~~~ 342 (393)
+|+|++|+|++++.+++.+.. ++|||++++++|+.|+++.+.+.+|.+..+ .. .+.
T Consensus 225 d~i~V~D~a~a~~~~~~~~~~---~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (343)
T TIGR01472 225 DWGHAKDYVEAMWLMLQQDKP---DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYF 301 (343)
T ss_pred CceeHHHHHHHHHHHHhcCCC---ccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCcccc
Confidence 999999999999999886432 589999999999999999999999975421 11 112
Q ss_pred CCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHh
Q 016208 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383 (393)
Q Consensus 343 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~ 383 (393)
.+.+...+.+|++|++++|||+|++ +++|+|+++++||++
T Consensus 302 ~~~~~~~~~~d~~k~~~~lgw~p~~-~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 302 RPTEVDLLLGDATKAKEKLGWKPEV-SFEKLVKEMVEEDLE 341 (343)
T ss_pred CCCccchhcCCHHHHHHhhCCCCCC-CHHHHHHHHHHHHHh
Confidence 3445556678999999999999999 999999999999984
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=323.11 Aligned_cols=309 Identities=26% Similarity=0.425 Sum_probs=266.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
++++||||.||||++.++.+... .+..+.++-..-... ...+..... .++..++.+|+.+...+.-.+....+|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~n-~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVRN-SPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhcc-CCCceEeeccccchHHHHhhhccCchhh
Confidence 79999999999999999999887 456666654332222 222222222 3789999999999999999998889999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCCCCCCCC-CCCCCCCCChHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEPDKMPIT-ESTPQKPINPYGKAKKM 205 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~~~~~~~-E~~~~~p~~~Y~~sK~~ 205 (393)
|+|.|+..+.+.+..++......|+.++..|+++++.. ++++|||+||..|||++.+.... |.+.++|.++|+.+|++
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaA 163 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAA 163 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHH
Confidence 99999999999899999999999999999999999988 69999999999999999877766 99999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|..++.|...++++++++|.++||||++... .+++.++.....+.+ .++.| +|.+.|+|
T Consensus 164 aE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-------------klipkFi~l~~~~~~-~~i~g------~g~~~rs~ 223 (331)
T KOG0747|consen 164 AEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-------------KLIPKFIKLAMRGKE-YPIHG------DGLQTRSY 223 (331)
T ss_pred HHHHHHHHhhccCCcEEEEeccCccCCCcChH-------------HHhHHHHHHHHhCCC-cceec------Ccccceee
Confidence 99999999999999999999999999986532 788888887777777 89998 99999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCc-------ceEEccCCCCCCcceecCHHHHH
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI-------KVEYLSRRPGDYAEVYSDPSKIR 358 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~-------~~~~~~~~~~~~~~~~~d~~k~~ 358 (393)
+|++|+++|+..++++.+.+ ++|||++..+.+..|+++.|.+.+.+.. .+.++++++..-.++.+|.+|++
T Consensus 224 l~veD~~ea~~~v~~Kg~~g--eIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik 301 (331)
T KOG0747|consen 224 LYVEDVSEAFKAVLEKGELG--EIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK 301 (331)
T ss_pred EeHHHHHHHHHHHHhcCCcc--ceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH
Confidence 99999999999999986654 7999999999999999999999887632 23445566666667889999999
Q ss_pred hhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 359 DELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 359 ~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.|||+|++ +|++||+.+++||.++.
T Consensus 302 -~LGw~~~~-p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 302 -KLGWRPTT-PWEEGLRKTIEWYTKNF 326 (331)
T ss_pred -hcCCcccC-cHHHHHHHHHHHHHhhh
Confidence 89999999 69999999999998875
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=355.21 Aligned_cols=304 Identities=25% Similarity=0.388 Sum_probs=248.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..|||||||||||||++|+++|+++|++|++++|...... +.+.... ...+++++.+|+.++. + .++|+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~---~~~~~~~-~~~~~~~i~~D~~~~~-----l--~~~D~ 186 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRK---ENVMHHF-SNPNFELIRHDVVEPI-----L--LEVDQ 186 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccch---hhhhhhc-cCCceEEEECCccChh-----h--cCCCE
Confidence 4489999999999999999999999999999987432211 1111111 1246888999987753 3 57999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC-----CCCCCChHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST-----PQKPINPYGKA 202 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~s 202 (393)
|||+|+...+..+..++...++.|+.++.+|+++|++.++ ++||+||..+||.....+.+|+. |..+.+.|+.+
T Consensus 187 ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~S 265 (442)
T PLN02206 187 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEG 265 (442)
T ss_pred EEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHH
Confidence 9999997655444557888999999999999999999987 89999999999876655677763 45567899999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccc
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 282 (393)
|.++|+++..|++..+++++++||+++|||+.... .+.++..++..+..+.+ +.++| ++++.
T Consensus 266 K~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~-----------~~~~v~~~i~~~l~~~~-i~i~g------~G~~~ 327 (442)
T PLN02206 266 KRTAETLTMDYHRGANVEVRIARIFNTYGPRMCID-----------DGRVVSNFVAQALRKEP-LTVYG------DGKQT 327 (442)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-----------ccchHHHHHHHHHcCCC-cEEeC------CCCEE
Confidence 99999999999888899999999999999974311 01556677777777777 77777 89999
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCC
Q 016208 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 362 (393)
++|+|++|+|++++.+++... .++|||++++.+|+.|+++.+.+.+|.+..+...+....+.....+|++|++++||
T Consensus 328 rdfi~V~Dva~ai~~a~e~~~---~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LG 404 (442)
T PLN02206 328 RSFQFVSDLVEGLMRLMEGEH---VGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLG 404 (442)
T ss_pred EeEEeHHHHHHHHHHHHhcCC---CceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcC
Confidence 999999999999999987542 25999999999999999999999999877776666555566677899999999999
Q ss_pred CceeccCHHHHHHHHHHHHHhcc
Q 016208 363 WTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|+|++ +++|+|+++++||++..
T Consensus 405 w~P~~-~l~egl~~~~~~~~~~~ 426 (442)
T PLN02206 405 WEPKV-SLRQGLPLMVKDFRQRV 426 (442)
T ss_pred CCCCC-CHHHHHHHHHHHHHHhh
Confidence 99999 89999999999997753
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=353.26 Aligned_cols=321 Identities=21% Similarity=0.286 Sum_probs=242.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhc--CCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELF--PQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+|+|||||||||||++|+++|+++ |++|++++|...... .+.... ....+++++.+|+.|.+.+.+++ .+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~----~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~--~~ 86 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK----HLLEPDTVPWSGRIQFHRINIKHDSRLEGLI--KM 86 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh----hhhccccccCCCCeEEEEcCCCChHHHHHHh--hc
Confidence 4479999999999999999999998 599999987532211 111100 01146899999999999999999 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-----------
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ----------- 193 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~----------- 193 (393)
+|+|||+|+.........++...+..|+.++.+++++|++.+ ++|||+||..+||...+.+.+|+.|.
T Consensus 87 ~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e 165 (386)
T PLN02427 87 ADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKE 165 (386)
T ss_pred CCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCcccccccccccccccc
Confidence 999999999765433344566777899999999999999887 79999999999997543333443321
Q ss_pred -----------CCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC
Q 016208 194 -----------KPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262 (393)
Q Consensus 194 -----------~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
.|.++|+.+|.++|++++.+++..+++++++||++||||+.....+.. . .......++..+...+..
T Consensus 166 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~ 243 (386)
T PLN02427 166 DESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGID-G-PSEGVPRVLACFSNNLLR 243 (386)
T ss_pred cccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCcccccc-c-cccccchHHHHHHHHHhc
Confidence 235689999999999999998888999999999999999753211100 0 000001455666677777
Q ss_pred CCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC-CcccHHHHHHHHHHHhCCCcc-----
Q 016208 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG-KGRSVKEFVEACKKATGVNIK----- 336 (393)
Q Consensus 263 ~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~-~~~s~~el~~~i~~~~g~~~~----- 336 (393)
+.+ +.+.| ++++.++|+|++|+|++++.+++.+....+++||++++ +.+|+.|+++.+.+.+|....
T Consensus 244 ~~~-~~~~g------~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 316 (386)
T PLN02427 244 REP-LKLVD------GGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALE 316 (386)
T ss_pred CCC-eEEEC------CCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhcccccccccc
Confidence 777 77777 78899999999999999999998654223469999987 589999999999999985211
Q ss_pred e--EEccC------CCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 337 V--EYLSR------RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 337 ~--~~~~~------~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
. ...+. ...+.....+|.+|++++|||+|++ +++++|+++++|+++..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~-~l~~gl~~~~~~~~~~~ 372 (386)
T PLN02427 317 EPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKT-SLWDLLESTLTYQHKTY 372 (386)
T ss_pred ccccccCcccccCccccchhhccCCHHHHHHhcCCCcCc-cHHHHHHHHHHHHHHHH
Confidence 0 01111 1123456678999999999999999 99999999999998753
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=353.43 Aligned_cols=334 Identities=25% Similarity=0.281 Sum_probs=247.5
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchh-------------hhhhhhhc-CCCCccEEEEc
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGA-------------VKVLQELF-PQPGQLQFIYA 108 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~ 108 (393)
++....||+|||||||||||++|+++|+++|++|++++|..+..... ...+..+. ....+++++.+
T Consensus 41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~ 120 (442)
T PLN02572 41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVG 120 (442)
T ss_pred CCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEEC
Confidence 33456779999999999999999999999999999987643321100 01111100 01136889999
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccC---hHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceeecCCCC
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLE---PLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATYGEPDK 184 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~---~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vyg~~~~ 184 (393)
|++|.+.+.++++..++|+|||+|+......+..+ ....+++|+.++.+++++|++.+++ +||++||..+||....
T Consensus 121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~ 200 (442)
T PLN02572 121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNI 200 (442)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCC
Confidence 99999999999976679999999976543322222 2456789999999999999999885 8999999999986431
Q ss_pred CCCCC-----------C---CCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCC-CCCCCcc---
Q 016208 185 MPITE-----------S---TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLG-EAPHPEL--- 246 (393)
Q Consensus 185 ~~~~E-----------~---~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~-~~~~~~~--- 246 (393)
+++| + .+..|.++|+.+|.++|.+++.|++.+|++++++||++||||++....- +.....+
T Consensus 201 -~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~ 279 (442)
T PLN02572 201 -DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD 279 (442)
T ss_pred -CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence 2222 2 2567889999999999999999998899999999999999998542100 0000000
Q ss_pred cccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHH
Q 016208 247 REHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVE 325 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~ 325 (393)
...+..++.++..+..+++ +.++| +|++.|+|+||+|+|++++.+++... .+...+||+++ +.+|+.|+++
T Consensus 280 ~~~~~~i~~~~~~~~~g~~-i~v~g------~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~ 351 (442)
T PLN02572 280 GVFGTALNRFCVQAAVGHP-LTVYG------KGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAK 351 (442)
T ss_pred cchhhHHHHHHHHHhcCCC-ceecC------CCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHH
Confidence 0011455666677777777 78887 89999999999999999999998542 22235899976 6799999999
Q ss_pred HHHHH---hCCCcceEEccCC--CCCCcceecCHHHHHhhCCCceecc--CHHHHHHHHHHHHHhccC
Q 016208 326 ACKKA---TGVNIKVEYLSRR--PGDYAEVYSDPSKIRDELNWTARFT--DLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 326 ~i~~~---~g~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~~--~~~e~l~~~~~~~~~~~~ 386 (393)
.+++. +|.+.++...+.. ..+.....+|++|++ +|||+|++. ++++++.+++.||+++.+
T Consensus 352 ~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 352 LVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred HHHHHHHhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 99999 8877766555433 233345668999997 599999851 488899999999987653
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=341.68 Aligned_cols=315 Identities=23% Similarity=0.272 Sum_probs=250.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhh-hhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQ-ELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|+||||||+||||++|+++|+++|++|++++|..... ....+.+. .......++.++.+|+.|.+++.++++..++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 84 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKP 84 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCC
Confidence 457999999999999999999999999999998854321 11111111 0111124688999999999999999976679
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-----EEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-----TLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-----~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
|+|||+|+.........++...+++|+.++.+++++|++.+++ ++|++||..+||.... +++|+.+..|.++|+
T Consensus 85 d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~~p~~~Y~ 163 (340)
T PLN02653 85 DEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPFHPRSPYA 163 (340)
T ss_pred CEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCCCCCChhH
Confidence 9999999986554444566778899999999999999988865 8999999999998765 889999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE-cCccccCCCC
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI-RGTDYNTADG 279 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g 279 (393)
.+|.++|.+++.++.++++.++..|+.++|||+....+ ...++..++..+..+.+ +.+ .| ++
T Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~g------~g 226 (340)
T PLN02653 164 VAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENF----------VTRKITRAVGRIKVGLQ-KKLFLG------NL 226 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCccc----------chhHHHHHHHHHHcCCC-CceEeC------CC
Confidence 99999999999999888999999999999999643110 00234444555666655 333 35 78
Q ss_pred ccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCc--ceEEcc--CCCCCCcceecCHH
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI--KVEYLS--RRPGDYAEVYSDPS 355 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~--~~~~~~--~~~~~~~~~~~d~~ 355 (393)
++.++|+|++|+|++++.+++... ++.||+++++++|+.|+++.+.+.+|.+. .....+ ..+.+.....+|++
T Consensus 227 ~~~rd~i~v~D~a~a~~~~~~~~~---~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 303 (340)
T PLN02653 227 DASRDWGFAGDYVEAMWLMLQQEK---PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDAS 303 (340)
T ss_pred cceecceeHHHHHHHHHHHHhcCC---CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHH
Confidence 999999999999999999998643 25899999999999999999999999642 222222 24555567778999
Q ss_pred HHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 356 KIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 356 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++++|||+|++ +++|+|+++++||++.
T Consensus 304 k~~~~lgw~p~~-~l~~gi~~~~~~~~~~ 331 (340)
T PLN02653 304 KAREVLGWKPKV-GFEQLVKMMVDEDLEL 331 (340)
T ss_pred HHHHHhCCCCCC-CHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999864
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=341.33 Aligned_cols=314 Identities=23% Similarity=0.283 Sum_probs=252.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|+||||||+||||++|++.|+++|++|++++|...........+. ....+.++.+|+.+.+++.++++..++|+|
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN----LAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh----hcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 4799999999999999999999999999999886543222111111 123677899999999999999976679999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCC-CCCCCCCCCCCCChHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDK-MPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~-~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
||+|+.........++...+++|+.++.+++++|+..+ ++++|++||..+|+.... .+++|+.+..|.++|+.+|.++
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~ 159 (349)
T TIGR02622 80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACA 159 (349)
T ss_pred EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHH
Confidence 99999765555556788899999999999999999876 789999999999986532 3688888888999999999999
Q ss_pred HHHHHHHHhhC-------CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC
Q 016208 207 EDIIIDFSKTT-------NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 207 E~~~~~~~~~~-------g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 279 (393)
|.+++.+++.. +++++++||+++|||++.. .+.+++.++..+..+++ +.+. ++
T Consensus 160 e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~------------~~~~~~~~~~~~~~g~~-~~~~-------~g 219 (349)
T TIGR02622 160 ELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWA------------EDRLIPDVIRAFSSNKI-VIIR-------NP 219 (349)
T ss_pred HHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcch------------hhhhhHHHHHHHhcCCC-eEEC-------CC
Confidence 99999887653 8999999999999996421 01577888888888776 6553 58
Q ss_pred ccccccccHHHHHHHHHHHHhcC---CCCCcceEEecCC--CcccHHHHHHHHHHHhC-CCcceEEc--cCCCCCCccee
Q 016208 280 TCVRDYIDVTDLVDAHVLALANA---KPGKVGIYNVGTG--KGRSVKEFVEACKKATG-VNIKVEYL--SRRPGDYAEVY 351 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~---~~~~~~~yni~~~--~~~s~~el~~~i~~~~g-~~~~~~~~--~~~~~~~~~~~ 351 (393)
++.++|+|++|+|++++.+++.. ....+++|||+++ +++++.++++.+.+.++ .++.+... +....+.....
T Consensus 220 ~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T TIGR02622 220 DATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLK 299 (349)
T ss_pred CcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceee
Confidence 89999999999999999888742 1112369999974 68999999999998765 34444332 23344555678
Q ss_pred cCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 352 SDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 352 ~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
+|++|++++|||+|++ +++++|+++++|++++.++
T Consensus 300 ~d~~k~~~~lgw~p~~-~l~~gi~~~i~w~~~~~~~ 334 (349)
T TIGR02622 300 LDSSKARTLLGWHPRW-GLEEAVSRTVDWYKAWLRG 334 (349)
T ss_pred cCHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999 9999999999999987543
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=340.13 Aligned_cols=306 Identities=22% Similarity=0.292 Sum_probs=243.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..|+|||||||||||++|++.|.++||+|++++|....... . ....++++.+|+.+.+.+..++ .++|+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~------~---~~~~~~~~~~Dl~d~~~~~~~~--~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS------E---DMFCHEFHLVDLRVMENCLKVT--KGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc------c---ccccceEEECCCCCHHHHHHHH--hCCCE
Confidence 55899999999999999999999999999999885321110 0 0123678899999999998888 68999
Q ss_pred EEEcccccCcc-CCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC----CCCCCCC--CCCCCChHH
Q 016208 128 VMHFAAVAYVG-ESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK----MPITEST--PQKPINPYG 200 (393)
Q Consensus 128 Vi~~A~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~----~~~~E~~--~~~p~~~Y~ 200 (393)
|||+|+..... ....++...+..|+.++.+|+++|++.++++|||+||.++||.... .+++|++ |..|.++|+
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg 168 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYG 168 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHH
Confidence 99999865321 1123445567899999999999999999999999999999986532 2466665 678899999
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC-CCCceeEcCccccCCCC
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG-IIPGLKIRGTDYNTADG 279 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~g 279 (393)
.+|..+|+++..++...+++++++||+++|||+.....+ .......++..+.. +.+ +.++| ++
T Consensus 169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~---------~~~~~~~~~~~~~~~~~~-i~~~g------~g 232 (370)
T PLN02695 169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGG---------REKAPAAFCRKALTSTDE-FEMWG------DG 232 (370)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCcccc---------ccccHHHHHHHHHcCCCC-eEEeC------CC
Confidence 999999999999988889999999999999997432100 00334455555444 345 88888 89
Q ss_pred ccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHh
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 359 (393)
++.++|+|++|++++++.+++... +++||+++++.+|++|+++.+.+..|.+.++...+... ......+|++|+++
T Consensus 233 ~~~r~~i~v~D~a~ai~~~~~~~~---~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~sk~~~ 308 (370)
T PLN02695 233 KQTRSFTFIDECVEGVLRLTKSDF---REPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE-GVRGRNSDNTLIKE 308 (370)
T ss_pred CeEEeEEeHHHHHHHHHHHHhccC---CCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC-CccccccCHHHHHH
Confidence 999999999999999999877642 26999999999999999999999999876665544322 22345689999999
Q ss_pred hCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 360 ELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.|||+|++ +++++|+++++|++++.
T Consensus 309 ~lgw~p~~-~l~e~i~~~~~~~~~~~ 333 (370)
T PLN02695 309 KLGWAPTM-RLKDGLRITYFWIKEQI 333 (370)
T ss_pred hcCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 99999998 89999999999998754
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=340.30 Aligned_cols=311 Identities=26% Similarity=0.360 Sum_probs=246.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|+|||||||||||++|+++|+++|++ |+++++...... ...+..+.. ...++++.+|+.|.+++.+++++.++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLADVSD-SERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHHhccc-CCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 58999999999999999999999975 555554321111 111111111 24578899999999999999976679999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc---------CCcEEEEeecceeecCCC----------CCCCCC
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH---------KVKTLIYSSTCATYGEPD----------KMPITE 189 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~~~~V~~SS~~vyg~~~----------~~~~~E 189 (393)
||+|+.........++...+++|+.++.+++++|++. +++++||+||.++||... ..+++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence 9999976543334567789999999999999999874 467999999999998631 124789
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
+.+..|.+.|+.+|..+|.+++.+++..+++++++|+++||||+.... .+++.++..+..+.+ +++
T Consensus 158 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-------------~~~~~~~~~~~~~~~-~~~ 223 (352)
T PRK10084 158 TTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-------------KLIPLVILNALEGKP-LPI 223 (352)
T ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-------------chHHHHHHHHhcCCC-eEE
Confidence 999999999999999999999999888899999999999999974211 466666666666666 777
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce--------EEcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV--------EYLS 341 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~--------~~~~ 341 (393)
+| ++++.++|+|++|+|+++..+++.... +++||+++++..|+.++++.+++.+|...+. ...+
T Consensus 224 ~~------~g~~~~~~v~v~D~a~a~~~~l~~~~~--~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~ 295 (352)
T PRK10084 224 YG------KGDQIRDWLYVEDHARALYKVVTEGKA--GETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVA 295 (352)
T ss_pred eC------CCCeEEeeEEHHHHHHHHHHHHhcCCC--CceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccc
Confidence 77 889999999999999999998886433 3799999999999999999999999863221 1112
Q ss_pred CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 342 RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 342 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
..+.....+.+|++|+++.|||+|++ +++++|+++++|++++.+
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lg~~p~~-~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 296 DRPGHDRRYAIDASKISRELGWKPQE-TFESGIRKTVEWYLANTE 339 (352)
T ss_pred cCCCCCceeeeCHHHHHHHcCCCCcC-CHHHHHHHHHHHHHhCHH
Confidence 23333445678999999999999998 899999999999998765
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=364.68 Aligned_cols=315 Identities=27% Similarity=0.458 Sum_probs=255.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|+|||||||||||++|+++|+++ |++|++++|...... . ..+... ....+++++.+|+.|.+.+..++...++
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~-~-~~l~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 81 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSN-L-KNLNPS-KSSPNFKFVKGDIASADLVNYLLITEGI 81 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccch-h-hhhhhc-ccCCCeEEEECCCCChHHHHHHHhhcCC
Confidence 3489999999999999999999998 689999887421111 1 111110 0124789999999999998887765789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCC---CCCCCCCCCCChHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMP---ITESTPQKPINPYGK 201 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~---~~E~~~~~p~~~Y~~ 201 (393)
|+|||+|+......+..++...++.|+.++.+++++|++.+ +++|||+||..+||.....+ .+|+.+..|.++|+.
T Consensus 82 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~ 161 (668)
T PLN02260 82 DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSA 161 (668)
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHH
Confidence 99999999876554455677889999999999999999987 88999999999999765432 367788889999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|..+|++++.+++..+++++++||++||||++... .+++.++..+..+.+ +++.| ++.+
T Consensus 162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-------------~~i~~~~~~a~~g~~-i~i~g------~g~~ 221 (668)
T PLN02260 162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-------------KLIPKFILLAMQGKP-LPIHG------DGSN 221 (668)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-------------cHHHHHHHHHhCCCC-eEEec------CCCc
Confidence 999999999999888899999999999999974321 567777777777777 88877 8999
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc--eEEccCCCCCCcceecCHHHHHh
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--VEYLSRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~d~~k~~~ 359 (393)
.++|+|++|+|+++..+++.... +++||+++++.+|+.|+++.+++.+|.+.+ +...+..+.....+.+|++|++
T Consensus 222 ~r~~ihV~Dva~a~~~~l~~~~~--~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~- 298 (668)
T PLN02260 222 VRSYLYCEDVAEAFEVVLHKGEV--GHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK- 298 (668)
T ss_pred eEeeEEHHHHHHHHHHHHhcCCC--CCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-
Confidence 99999999999999998876543 369999999999999999999999997653 2333333444456678999997
Q ss_pred hCCCceeccCHHHHHHHHHHHHHhccCCCC
Q 016208 360 ELNWTARFTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
.|||+|++ +++|+|+++++||+++.++|.
T Consensus 299 ~lGw~p~~-~~~egl~~~i~w~~~~~~~~~ 327 (668)
T PLN02260 299 KLGWQERT-SWEEGLKKTMEWYTSNPDWWG 327 (668)
T ss_pred HcCCCCCC-CHHHHHHHHHHHHHhChhhhh
Confidence 69999998 899999999999999876543
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=364.95 Aligned_cols=317 Identities=21% Similarity=0.271 Sum_probs=249.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH-HHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA-VNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~~ 124 (393)
..+|+|||||||||||++|+++|+++ ||+|++++|...... . ... ..+++++.+|++|.+. +.+++ .+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~---~----~~~-~~~~~~~~gDl~d~~~~l~~~l--~~ 382 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS---R----FLG-HPRFHFVEGDISIHSEWIEYHI--KK 382 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh---h----hcC-CCceEEEeccccCcHHHHHHHh--cC
Confidence 35689999999999999999999986 799999998543211 0 111 1468999999998765 56777 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-------CCCC
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-------KPIN 197 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-------~p~~ 197 (393)
+|+|||+|+...+..+..++...+++|+.++.+++++|++.+ +++||+||.++||.....+++|+.+. .|.+
T Consensus 383 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s 461 (660)
T PRK08125 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRW 461 (660)
T ss_pred CCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCcc
Confidence 999999999776544556778889999999999999999988 79999999999997665678888643 3456
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
+|+.+|.++|++++.|++.++++++++||+++|||++..... .. ...+.+++.++..+..+.+ +.+.|
T Consensus 462 ~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~-~~----~~~~~~i~~~i~~~~~~~~-i~~~g------ 529 (660)
T PRK08125 462 IYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNA-AR----IGSSRAITQLILNLVEGSP-IKLVD------ 529 (660)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCcccccc-cc----ccccchHHHHHHHhcCCCC-eEEeC------
Confidence 899999999999999988889999999999999997532100 00 0011567777777777777 77777
Q ss_pred CCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC-cccHHHHHHHHHHHhCCCcceEEccCC------------
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK-GRSVKEFVEACKKATGVNIKVEYLSRR------------ 343 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~------------ 343 (393)
+|++.++|+|++|+|++++.+++... ...+++||+++++ .+|+.|+++.+.+.+|........+..
T Consensus 530 ~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 609 (660)
T PRK08125 530 GGKQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYY 609 (660)
T ss_pred CCceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccccc
Confidence 88999999999999999999998643 2234799999885 799999999999999854221111110
Q ss_pred ---CCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 344 ---PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 344 ---~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
..+.....+|++|+++.|||+|++ +++|+|+++++|++++.+-
T Consensus 610 ~~~~~~~~~~~~d~~ka~~~LGw~P~~-~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 610 GKGYQDVEHRKPSIRNARRLLDWEPKI-DMQETIDETLDFFLRTVDL 655 (660)
T ss_pred ccccccccccCCChHHHHHHhCCCCCC-cHHHHHHHHHHHHHhcccc
Confidence 113334567999999999999999 8999999999999987654
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=330.35 Aligned_cols=281 Identities=15% Similarity=0.160 Sum_probs=232.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+||||||+||||++|+++|+++| +|++++|... .+.+|+.|.+.+.++++..++|+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~--------------------~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST--------------------DYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc--------------------cccCCCCCHHHHHHHHHhcCCCEEE
Confidence 589999999999999999999999 7988876321 2348999999999999766899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|||+....+.+..++...+.+|+.++.+++++|++.++ ++||+||..|||.....+++|+++..|.++|+.+|..+|++
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~~ 138 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEKA 138 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHHH
Confidence 99998877667778888899999999999999999986 79999999999987767899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCC--Ccccccccc
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD--GTCVRDYID 287 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~i~ 287 (393)
+..++ .+++++|++++|||+.. .++..+++.+..+++ +.+.| + +.+.+.+.+
T Consensus 139 ~~~~~----~~~~ilR~~~vyGp~~~---------------~~~~~~~~~~~~~~~-~~v~~------d~~g~~~~~~~~ 192 (299)
T PRK09987 139 LQEHC----AKHLIFRTSWVYAGKGN---------------NFAKTMLRLAKEREE-LSVIN------DQFGAPTGAELL 192 (299)
T ss_pred HHHhC----CCEEEEecceecCCCCC---------------CHHHHHHHHHhcCCC-eEEeC------CCcCCCCCHHHH
Confidence 98864 36799999999999643 567778888877777 88877 4 556666677
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHh---CCCcc---eEEc-----cCCCCCCcceecCHHH
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKAT---GVNIK---VEYL-----SRRPGDYAEVYSDPSK 356 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~---g~~~~---~~~~-----~~~~~~~~~~~~d~~k 356 (393)
++|+++++..++...... ++||+++++.+|+.|+++.|.+.+ |.+.+ +... +....++.+..+|++|
T Consensus 193 ~d~~~~~~~~~~~~~~~~--giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k 270 (299)
T PRK09987 193 ADCTAHAIRVALNKPEVA--GLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEK 270 (299)
T ss_pred HHHHHHHHHHhhccCCCC--CeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHH
Confidence 888888888777654332 599999999999999999998764 43331 2222 2334466777899999
Q ss_pred HHhhCCCceeccCHHHHHHHHHHHHH
Q 016208 357 IRDELNWTARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 357 ~~~~lG~~p~~~~~~e~l~~~~~~~~ 382 (393)
+++.|||+|. +|+|+|+++++.+.
T Consensus 271 ~~~~lg~~~~--~~~~~l~~~~~~~~ 294 (299)
T PRK09987 271 FQQNFALVLP--DWQVGVKRMLTELF 294 (299)
T ss_pred HHHHhCCCCc--cHHHHHHHHHHHHh
Confidence 9999999985 89999999998653
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=309.06 Aligned_cols=307 Identities=25% Similarity=0.402 Sum_probs=265.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
...+.+||+||||.||||+||++.|..+||+|++++..-...... +..... ...++.+.-|+..+ ++ ..
T Consensus 23 ~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n---~~~~~~-~~~fel~~hdv~~p-----l~--~e 91 (350)
T KOG1429|consen 23 KPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKEN---LEHWIG-HPNFELIRHDVVEP-----LL--KE 91 (350)
T ss_pred cCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhh---cchhcc-CcceeEEEeechhH-----HH--HH
Confidence 345558999999999999999999999999999998643332221 111111 25667777777555 55 67
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC-----CCCCCChH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST-----PQKPINPY 199 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y 199 (393)
+|.|+|+|+...+.....++...+..|+.++.+++..|++.+ +||+++||+.|||++...|..|+- |..|...|
T Consensus 92 vD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cy 170 (350)
T KOG1429|consen 92 VDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCY 170 (350)
T ss_pred hhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhh
Confidence 899999999998888888999999999999999999999998 599999999999998766666654 44578889
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 279 (393)
...|..+|.++.+|.++.|+.+.|.|+.+.|||..+.+- ++.+..+...++.++| +.++| +|
T Consensus 171 degKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~d-----------grvvsnf~~q~lr~ep-ltv~g------~G 232 (350)
T KOG1429|consen 171 DEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDD-----------GRVVSNFIAQALRGEP-LTVYG------DG 232 (350)
T ss_pred hHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCC-----------ChhhHHHHHHHhcCCC-eEEEc------CC
Confidence 999999999999999999999999999999999855332 3788888999999999 99999 99
Q ss_pred ccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHh
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 359 (393)
.+.|+|.+++|++++++++++.+... -+|||+++.+|+.|+++++.+..+-...+.+....+.++.....|++++++
T Consensus 233 ~qtRSF~yvsD~Vegll~Lm~s~~~~---pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake 309 (350)
T KOG1429|consen 233 KQTRSFQYVSDLVEGLLRLMESDYRG---PVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKE 309 (350)
T ss_pred cceEEEEeHHHHHHHHHHHhcCCCcC---CcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHH
Confidence 99999999999999999999987765 699999999999999999999998888888888888899999999999999
Q ss_pred hCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 360 ELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.|||.|+. +++|+|..++.|+++..
T Consensus 310 ~LgW~Pkv-~L~egL~~t~~~fr~~i 334 (350)
T KOG1429|consen 310 QLGWEPKV-SLREGLPLTVTYFRERI 334 (350)
T ss_pred HhCCCCCC-cHHHhhHHHHHHHHHHH
Confidence 99999999 99999999999998753
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=327.95 Aligned_cols=311 Identities=29% Similarity=0.444 Sum_probs=251.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|+|||||||||++|+++|++.| ++|++++|...... .+.+..+.. ..++.++.+|+.+++++.++++..++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LENLADLED-NPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhhhhhhcc-CCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 59999999999999999999987 78998876432111 111112211 24688999999999999999965569999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceeecCCCCC-CCCCCCCCCCCChHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATYGEPDKM-PITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vyg~~~~~-~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
||+|+......+...+...+++|+.++.+++++|.+.+.+ ++|++||..+||..... +++|+.+..|.+.|+.+|..+
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 157 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAAS 157 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHH
Confidence 9999976554445567788999999999999999987433 89999999999975433 688999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|.+++.++.+.+++++++||+.+|||..... .+++.++.....+.+ +++.+ ++++.++|+
T Consensus 158 e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~g~~~~~~i 217 (317)
T TIGR01181 158 DHLVRAYHRTYGLPALITRCSNNYGPYQFPE-------------KLIPLMITNALAGKP-LPVYG------DGQQVRDWL 217 (317)
T ss_pred HHHHHHHHHHhCCCeEEEEeccccCCCCCcc-------------cHHHHHHHHHhcCCC-ceEeC------CCceEEeeE
Confidence 9999999888899999999999999864311 567777777777766 77766 788999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce-EEccCCCCCCcceecCHHHHHhhCCCce
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV-EYLSRRPGDYAEVYSDPSKIRDELNWTA 365 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~lG~~p 365 (393)
|++|+++++..+++.... +++||++++++++++|+++.+.+.+|.+... ...+........+.+|++|+++.|||+|
T Consensus 218 ~v~D~a~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p 295 (317)
T TIGR01181 218 YVEDHCRAIYLVLEKGRV--GETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAP 295 (317)
T ss_pred EHHHHHHHHHHHHcCCCC--CceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCC
Confidence 999999999999886443 3699999999999999999999999975432 2222233333445689999999999999
Q ss_pred eccCHHHHHHHHHHHHHhccCC
Q 016208 366 RFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 366 ~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
++ +++++++++++||+++..+
T Consensus 296 ~~-~~~~~i~~~~~~~~~~~~~ 316 (317)
T TIGR01181 296 KY-TFEEGLRKTVQWYLDNEWW 316 (317)
T ss_pred CC-cHHHHHHHHHHHHHhccCC
Confidence 98 8999999999999888654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=327.67 Aligned_cols=326 Identities=48% Similarity=0.803 Sum_probs=260.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
+||||||||+||++|+++|+++|++|++++|..+........+.. ..+++++.+|+.+.+++.++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER----ITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc----ccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 589999999999999999999999999887644332211111111 1257788999999999999997668999999
Q ss_pred cccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 016208 131 FAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDII 210 (393)
Q Consensus 131 ~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~ 210 (393)
+|+.........++...++.|+.++.+++++|.+.+++++|++||.++|+.....+++|+++..|.++|+.+|..+|.++
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~~ 156 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERIL 156 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHHH
Confidence 99976544444566778899999999999999999988999999999998776668899999999999999999999999
Q ss_pred HHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 211 IDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 211 ~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+.++.+ .+++++++||+++||+...+.++...... ..+++.+..........+.++|..+..+++++.++|||++
T Consensus 157 ~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 232 (328)
T TIGR01179 157 RDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGI----THLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVM 232 (328)
T ss_pred HHHHHhccCCCEEEEecCcccCCCCCCccccCCccc----chHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHH
Confidence 998877 79999999999999997654433221111 1456666655543332266666555566788899999999
Q ss_pred HHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceecc
Q 016208 290 DLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368 (393)
Q Consensus 290 Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 368 (393)
|++++++.++... ....+++||+++++++|+.|+++.+.+.+|.+.++...+..........+|++|++++|||+|+++
T Consensus 233 D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~ 312 (328)
T TIGR01179 233 DLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYT 312 (328)
T ss_pred HHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcc
Confidence 9999999998752 222347999999999999999999999999988776656555555566789999999999999994
Q ss_pred CHHHHHHHHHHHHHhc
Q 016208 369 DLQGSLQIAWRWQKTH 384 (393)
Q Consensus 369 ~~~e~l~~~~~~~~~~ 384 (393)
+++++++++++|+++|
T Consensus 313 ~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 313 DLEIIIKTAWRWESRN 328 (328)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 4999999999999875
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=325.33 Aligned_cols=301 Identities=22% Similarity=0.236 Sum_probs=229.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+|+||||||+||||++|+++|+++|++|++++|....... ..+..+.....++.++.+|+.+.+++.+++ .++|
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d 83 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN--THLRELEGGKERLILCKADLQDYEALKAAI--DGCD 83 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH--HHHHHhhCCCCcEEEEecCcCChHHHHHHH--hcCC
Confidence 356899999999999999999999999999999885432111 111122111236888999999999999999 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc-eeecCCCC---CCCCCCC------CCCCC
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC-ATYGEPDK---MPITEST------PQKPI 196 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~-~vyg~~~~---~~~~E~~------~~~p~ 196 (393)
+|||+|+.. ..++...++.|+.++.+++++|++.+++++||+||. ++||.... .+++|++ +..|.
T Consensus 84 ~Vih~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~ 158 (342)
T PLN02214 84 GVFHTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTK 158 (342)
T ss_pred EEEEecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccc
Confidence 999999864 245678899999999999999999999999999996 68875332 3578874 44577
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
++|+.+|..+|++++.++++.+++++++||++||||+...... ..+..++..+. +.. . .
T Consensus 159 ~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~-----------~~~~~~~~~~~-g~~-~-~------- 217 (342)
T PLN02214 159 NWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTIN-----------ASLYHVLKYLT-GSA-K-T------- 217 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-----------chHHHHHHHHc-CCc-c-c-------
Confidence 8999999999999999988889999999999999997542110 22333333333 222 1 1
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC-CcceEEccCCCCCCcceecCHH
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-NIKVEYLSRRPGDYAEVYSDPS 355 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~ 355 (393)
.+++.++|||++|+|++++.+++.+..+ +.||+++ ...++.|+++.+.+.++. +.+....+..........+|++
T Consensus 218 -~~~~~~~~i~V~Dva~a~~~al~~~~~~--g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 293 (342)
T PLN02214 218 -YANLTQAYVDVRDVALAHVLVYEAPSAS--GRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQ 293 (342)
T ss_pred -CCCCCcCeeEHHHHHHHHHHHHhCcccC--CcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcH
Confidence 1345789999999999999999875443 5999986 478999999999999863 2222222222333445668999
Q ss_pred HHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 356 KIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 356 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++ +|||+| + +++|+|+++++|+++.
T Consensus 294 k~~-~LG~~p-~-~lee~i~~~~~~~~~~ 319 (342)
T PLN02214 294 KIK-DLGLEF-T-STKQSLYDTVKSLQEK 319 (342)
T ss_pred HHH-HcCCcc-c-CHHHHHHHHHHHHHHc
Confidence 997 599999 4 8999999999999875
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=322.59 Aligned_cols=291 Identities=22% Similarity=0.324 Sum_probs=234.7
Q ss_pred EEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEcc
Q 016208 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHFA 132 (393)
Q Consensus 53 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A 132 (393)
||||||||||++|++.|+++|++|+++.+. ..+|+.+.+++.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999988865321 137999999999999777899999999
Q ss_pred cccCc-cCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC----CCCCCC-hHHHHHHHH
Q 016208 133 AVAYV-GESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST----PQKPIN-PYGKAKKMS 206 (393)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~p~~-~Y~~sK~~~ 206 (393)
+.... ..+..++...++.|+.++.+|+++|++.+++++|++||..+||.....+++|++ +..|.+ +|+.+|.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~ 137 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAG 137 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHH
Confidence 97542 223456777899999999999999999999999999999999977667899986 455554 599999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH----HHhCCCCceeE-cCccccCCCCcc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD----AARGIIPGLKI-RGTDYNTADGTC 281 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~g~~~~~~~g~~ 281 (393)
|++++.+++..+++++++||+.+|||+.... .. .+.+++.++. ....+.+ +.+ +| ++++
T Consensus 138 e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~--~~-------~~~~~~~~i~~~~~~~~~~~~-~~~~~~------~g~~ 201 (306)
T PLN02725 138 IKMCQAYRIQYGWDAISGMPTNLYGPHDNFH--PE-------NSHVIPALIRRFHEAKANGAP-EVVVWG------SGSP 201 (306)
T ss_pred HHHHHHHHHHhCCCEEEEEecceeCCCCCCC--CC-------CCcccHHHHHHHHHHhhcCCC-eEEEcC------CCCe
Confidence 9999999888899999999999999974311 00 0133444443 3345555 443 55 7899
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhC
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDEL 361 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 361 (393)
.++|+|++|++++++.+++..... +.||+++++.+|+.|+++.+.+.+|.+..+...+..........+|++|++ .|
T Consensus 202 ~~~~i~v~Dv~~~~~~~~~~~~~~--~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~l 278 (306)
T PLN02725 202 LREFLHVDDLADAVVFLMRRYSGA--EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SL 278 (306)
T ss_pred eeccccHHHHHHHHHHHHhccccC--cceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHH-Hh
Confidence 999999999999999999864332 589999999999999999999999987665554444444445678999997 59
Q ss_pred CCceeccCHHHHHHHHHHHHHhccC
Q 016208 362 NWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
||+|++ +++|+|+++++|++++..
T Consensus 279 g~~p~~-~~~~~l~~~~~~~~~~~~ 302 (306)
T PLN02725 279 GWDPKF-SLKDGLQETYKWYLENYE 302 (306)
T ss_pred CCCCCC-CHHHHHHHHHHHHHhhhh
Confidence 999999 999999999999998864
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=318.92 Aligned_cols=304 Identities=20% Similarity=0.172 Sum_probs=229.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|+||||||+||||++|+++|+++|++|+++.|.......... +........+++++.+|+++.+++.+++ .++|+|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~v 81 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDH-LLALDGAKERLKLFKADLLDEGSFELAI--DGCETV 81 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHH-HHhccCCCCceEEEeCCCCCchHHHHHH--cCCCEE
Confidence 4799999999999999999999999999998875433221111 1111111246889999999999999999 689999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCC-----CCCCCCCCCCCCC------C
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEP-----DKMPITESTPQKP------I 196 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~-----~~~~~~E~~~~~p------~ 196 (393)
||+|+.........++...++.|+.++.+++++|.+. +++++|++||..+|+.. +..+++|+.+..| .
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~ 161 (325)
T PLN02989 82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERK 161 (325)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccc
Confidence 9999975443333456778999999999999999885 57899999998877543 2346788887765 3
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
++|+.+|..+|.+++.|++..+++++++||+++|||+..... .+...++..+..+++ . .
T Consensus 162 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~------------~~~~~~i~~~~~~~~-~--~------ 220 (325)
T PLN02989 162 QWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTL------------NFSVAVIVELMKGKN-P--F------ 220 (325)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCC------------CchHHHHHHHHcCCC-C--C------
Confidence 689999999999999998888999999999999999754210 233333444444433 1 1
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccC--CCCCCcceecCH
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR--RPGDYAEVYSDP 354 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~--~~~~~~~~~~d~ 354 (393)
+.+.++|+|++|+|++++.+++.+... ++||++ ++.+|++|+++.+.+.++.. .....+. .......+..|+
T Consensus 221 --~~~~r~~i~v~Dva~a~~~~l~~~~~~--~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 294 (325)
T PLN02989 221 --NTTHHRFVDVRDVALAHVKALETPSAN--GRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCL 294 (325)
T ss_pred --CCcCcCeeEHHHHHHHHHHHhcCcccC--ceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCH
Confidence 124589999999999999999875432 599995 56899999999999999732 1111111 111223567899
Q ss_pred HHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 355 SKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 355 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+|+++ |||.|.+ +++|+|+++++|+++.
T Consensus 295 ~k~~~-lg~~p~~-~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 295 DKVKS-LGIIEFT-PTETSLRDTVLSLKEK 322 (325)
T ss_pred HHHHH-cCCCCCC-CHHHHHHHHHHHHHHh
Confidence 99875 9999999 8999999999999754
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=318.93 Aligned_cols=296 Identities=21% Similarity=0.301 Sum_probs=219.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHH-HHHHhh---CC
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAV-NKIFAE---NA 124 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~-~~~~~~---~~ 124 (393)
|||||||||||++|+++|+++|++|+++.|....... . ..+..+|+.|. +++ ..++.. .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-F------------VNLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-H------------HhhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 8999999999999999999999977776553322110 0 11122444443 332 233311 27
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
+|+|||+|+..... ..++...++.|+.++.+|+++|++.++ ++||+||.++||.....+.+|+.+..|.++|+.+|.
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 145 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKF 145 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHH
Confidence 99999999865432 234556789999999999999999988 699999999999765557888888899999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
++|++++.++...+++++++||+++|||++..... . ..+...+...+..+.+ ..+++ ++++..++
T Consensus 146 ~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~------~---~~~~~~~~~~~~~~~~-~~i~~-----g~~~~~r~ 210 (308)
T PRK11150 146 LFDEYVRQILPEANSQICGFRYFNVYGPREGHKGS------M---ASVAFHLNNQLNNGEN-PKLFE-----GSENFKRD 210 (308)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCc------c---chhHHHHHHHHhcCCC-CEEec-----CCCceeee
Confidence 99999999988789999999999999997532100 0 0234445556666654 33332 16678899
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCC-cceEEccCCC--CCCcceecCHHHHHhhC
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-IKVEYLSRRP--GDYAEVYSDPSKIRDEL 361 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~--~~~~~~~~d~~k~~~~l 361 (393)
|+|++|+|++++.+++... +++||+++++.+|+.|+++.+.+.+|.. ......+... .......+|++|+++ +
T Consensus 211 ~i~v~D~a~a~~~~~~~~~---~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~ 286 (308)
T PRK11150 211 FVYVGDVAAVNLWFWENGV---SGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRA-A 286 (308)
T ss_pred eeeHHHHHHHHHHHHhcCC---CCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHh-c
Confidence 9999999999999888642 2599999999999999999999999853 1211112211 112234689999985 7
Q ss_pred CCceeccCHHHHHHHHHHHHH
Q 016208 362 NWTARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~ 382 (393)
||+|+.++++|+|+++++|+.
T Consensus 287 g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 287 GYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHhh
Confidence 999874489999999999985
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=316.73 Aligned_cols=312 Identities=18% Similarity=0.217 Sum_probs=227.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
++++|+||||||+||||++|+++|+++|++|+++.|....... ...+..+.. .+++.++.+|++|.+++.+++ .++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~--~~~ 81 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKK-IAHLRALQE-LGDLKIFGADLTDEESFEAPI--AGC 81 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHHhcCC-CCceEEEEcCCCChHHHHHHH--hcC
Confidence 4567899999999999999999999999999988875432211 111111111 136889999999999999999 689
Q ss_pred cEEEEcccccCccCCccCh-HHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCCC----CCCCCCCC--------
Q 016208 126 DAVMHFAAVAYVGESTLEP-LRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEPD----KMPITEST-------- 191 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~~----~~~~~E~~-------- 191 (393)
|+|||+|+.... ...++ ...+++|+.++.+++++|.+. +++++||+||.++||... +.+++|+.
T Consensus 82 d~vih~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~ 159 (338)
T PLN00198 82 DLVFHVATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLT 159 (338)
T ss_pred CEEEEeCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhh
Confidence 999999996432 12233 346799999999999999886 588999999999998532 23455542
Q ss_pred -CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 192 -PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 192 -~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
+..|.++|+.+|.++|.+++.|++..+++++++||++||||++.+... .++..+ ..+..+.+ +.+.
T Consensus 160 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~-----------~~~~~~-~~~~~~~~-~~~~ 226 (338)
T PLN00198 160 SEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIP-----------SSLSLA-MSLITGNE-FLIN 226 (338)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCC-----------CcHHHH-HHHHcCCc-cccc
Confidence 345788999999999999999998889999999999999997542210 233322 23444444 4443
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC-CcceEEccCCCCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-NIKVEYLSRRPGDYAE 349 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~ 349 (393)
|... .......++|+|++|+|++++.+++.+... +.| +++++.+|+.|+++.+.+.++. +.+....+ .+ ....
T Consensus 227 g~~~-~~~~~~~~~~i~V~D~a~a~~~~~~~~~~~--~~~-~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~-~~-~~~~ 300 (338)
T PLN00198 227 GLKG-MQMLSGSISITHVEDVCRAHIFLAEKESAS--GRY-ICCAANTSVPELAKFLIKRYPQYQVPTDFGD-FP-SKAK 300 (338)
T ss_pred cccc-cccccCCcceeEHHHHHHHHHHHhhCcCcC--CcE-EEecCCCCHHHHHHHHHHHCCCCCCCccccc-cC-CCCc
Confidence 3100 001122479999999999999999875433 478 4566789999999999998863 23322211 11 2234
Q ss_pred eecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 350 ~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
..+|++|+++ +||+|++ +++|+|+++++||+++
T Consensus 301 ~~~~~~k~~~-~G~~p~~-~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 301 LIISSEKLIS-EGFSFEY-GIEEIYDQTVEYFKAK 333 (338)
T ss_pred cccChHHHHh-CCceecC-cHHHHHHHHHHHHHHc
Confidence 5689999987 6999999 8999999999999975
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=318.81 Aligned_cols=319 Identities=18% Similarity=0.217 Sum_probs=226.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+.+.|+||||||+||||++|+++|+++|++|++++|...... .....+.. ..+++++.+|+.+.+++.+++ .++
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~--~~~ 80 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL---HLLSKWKE-GDRLRLFRADLQEEGSFDEAV--KGC 80 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH---HHHHhhcc-CCeEEEEECCCCCHHHHHHHH--cCC
Confidence 344589999999999999999999999999999887532211 11112111 246889999999999999998 689
Q ss_pred cEEEEcccccCccC--CccChHH-----HHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCC-----CCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE--STLEPLR-----YYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDK-----MPITESTP 192 (393)
Q Consensus 126 d~Vi~~A~~~~~~~--~~~~~~~-----~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~-----~~~~E~~~ 192 (393)
|+|||+|+...... ...++.. .++.|+.++.+++++|.+.+ +++||++||.++||.... .+++|+.+
T Consensus 81 d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~ 160 (353)
T PLN02896 81 DGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQ 160 (353)
T ss_pred CEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccC
Confidence 99999999765432 2223433 34556799999999998875 789999999999985321 35677632
Q ss_pred --C-------CCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 193 --Q-------KPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 193 --~-------~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
. .|.++|+.||.++|++++.|++..+++++++||++||||+..+.+. .++..+...+.+.
T Consensus 161 ~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~-----------~~~~~~~~~~~g~ 229 (353)
T PLN02896 161 TPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVP-----------SSIQVLLSPITGD 229 (353)
T ss_pred CcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCC-----------chHHHHHHHhcCC
Confidence 1 2445899999999999999998899999999999999997543210 3333333332221
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCC-cceEEccC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-IKVEYLSR 342 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~ 342 (393)
....+..+ ........++|||++|+|++++.+++.+... +.|++ +++.+++.|+++.+.+.++.. ......+.
T Consensus 230 ~~~~~~~~---~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~~--~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~~ 303 (353)
T PLN02896 230 SKLFSILS---AVNSRMGSIALVHIEDICDAHIFLMEQTKAE--GRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDEE 303 (353)
T ss_pred cccccccc---ccccccCceeEEeHHHHHHHHHHHHhCCCcC--ccEEe-cCCCCCHHHHHHHHHHhCCCCCcccccccc
Confidence 11011111 0001123469999999999999999865433 47865 577899999999999998732 22222222
Q ss_pred CCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCCCC
Q 016208 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390 (393)
Q Consensus 343 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 390 (393)
...+. ...+|++|++ .|||+|++ +++++|+++++|++++..-..+
T Consensus 304 ~~~~~-~~~~~~~~~~-~lGw~p~~-~l~~~i~~~~~~~~~~~~~~~~ 348 (353)
T PLN02896 304 KRGSI-PSEISSKKLR-DLGFEYKY-GIEEIIDQTIDCCVDHGFLPQN 348 (353)
T ss_pred ccCcc-ccccCHHHHH-HcCCCccC-CHHHHHHHHHHHHHHCCCCCcc
Confidence 22222 2456888886 59999999 8999999999999998654333
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=314.57 Aligned_cols=303 Identities=20% Similarity=0.184 Sum_probs=225.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.|+|||||||||||++|+++|+++|++|++++|....... ...+........+++++.+|+.+++.+.+++ .++|+|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~V 80 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVV--DGCEGV 80 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHH--cCCCEE
Confidence 3789999999999999999999999999999885432211 1111111111247889999999999999999 689999
Q ss_pred EEcccccCccCCccChH-HHHHHHHHHHHHHHHHHHhc-CCcEEEEeecce--eecCC---CCCCCCCCCCCCC------
Q 016208 129 MHFAAVAYVGESTLEPL-RYYHNITSNTLVILEAMAAH-KVKTLIYSSTCA--TYGEP---DKMPITESTPQKP------ 195 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~--vyg~~---~~~~~~E~~~~~p------ 195 (393)
||+|+.... ...++. ..+++|+.++.+++++|.+. +++++||+||.+ +|+.. ...+++|+.+..|
T Consensus 81 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~ 158 (322)
T PLN02662 81 FHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES 158 (322)
T ss_pred EEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence 999997532 223343 68899999999999999987 889999999976 46532 2336788876655
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
.++|+.+|.++|++++.++++.+++++++||+++|||...... ......+..+..+.+ .
T Consensus 159 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~------------~~~~~~~~~~~~~~~-~-------- 217 (322)
T PLN02662 159 KLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTL------------NTSAEAILNLINGAQ-T-------- 217 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCC------------CchHHHHHHHhcCCc-c--------
Confidence 2689999999999999998888999999999999999743210 122222333333332 1
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHH
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPS 355 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 355 (393)
.+++.++|+|++|+|++++.+++.+... +.||++ ++.+|++|+++.+.+.++...................+|++
T Consensus 218 --~~~~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 292 (322)
T PLN02662 218 --FPNASYRWVDVRDVANAHIQAFEIPSAS--GRYCLV-ERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKE 292 (322)
T ss_pred --CCCCCcCeEEHHHHHHHHHHHhcCcCcC--CcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChH
Confidence 1345789999999999999999875443 488886 57899999999999988742111111111223455679999
Q ss_pred HHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 356 KIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 356 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|++ .|||++ + +++++|+++++||+++.
T Consensus 293 k~~-~lg~~~-~-~~~~~l~~~~~~~~~~~ 319 (322)
T PLN02662 293 KAK-SLGIEF-I-PLEVSLKDTVESLKEKG 319 (322)
T ss_pred HHH-HhCCcc-c-cHHHHHHHHHHHHHHcC
Confidence 998 499986 5 89999999999998763
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=300.40 Aligned_cols=306 Identities=21% Similarity=0.213 Sum_probs=236.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|||||||||||+||++.|+++||+|+++.|...+ ....+.+.++.....+...+.+|+.|++++.+++ .+||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~-~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai--~gcdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED-EKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI--DGCDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch-hhhHHHHHhcccCcccceEEeccccccchHHHHH--hCCCE
Confidence 56899999999999999999999999999999996554 3343445555555567999999999999999999 89999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCC-----CCCCCCCCCCCCC------
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEP-----DKMPITESTPQKP------ 195 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~-----~~~~~~E~~~~~p------ 195 (393)
|||+|.+..+.... ...+..+..+.|+.|++++|++.+ ++|+|++||.++.... +...++|+....+
T Consensus 82 VfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~ 160 (327)
T KOG1502|consen 82 VFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK 160 (327)
T ss_pred EEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh
Confidence 99999988775433 456899999999999999999997 9999999997776433 3346777765333
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
.++|..+|..+|+.+++++++.+++.+++.|+.|+||...... . .-...++..+.+... .
T Consensus 161 ~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l----~-------~s~~~~l~~i~G~~~-~-------- 220 (327)
T KOG1502|consen 161 KLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSL----N-------SSLNALLKLIKGLAE-T-------- 220 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccccc----c-------hhHHHHHHHHhcccc-c--------
Confidence 3589999999999999999999999999999999999744211 0 223344444444332 1
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCc-ceEEccCCCCCCcceecCH
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI-KVEYLSRRPGDYAEVYSDP 354 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d~ 354 (393)
..+....||||+|+|.|++.+++++... +.|.+.+ +..++.|+++.+.+.+.... +...............+++
T Consensus 221 --~~n~~~~~VdVrDVA~AHv~a~E~~~a~--GRyic~~-~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~ 295 (327)
T KOG1502|consen 221 --YPNFWLAFVDVRDVALAHVLALEKPSAK--GRYICVG-EVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSS 295 (327)
T ss_pred --CCCCceeeEeHHHHHHHHHHHHcCcccC--ceEEEec-CcccHHHHHHHHHHhCCCCCCCCCCCcccccccccccccc
Confidence 1233445999999999999999998876 6997754 45669999999999887544 1111111122333446899
Q ss_pred HHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 355 SKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 355 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+|+++++|++.+ +++|.+.++++++++.
T Consensus 296 ~k~k~lg~~~~~--~l~e~~~dt~~sl~~~ 323 (327)
T KOG1502|consen 296 EKLKSLGGFKFR--PLEETLSDTVESLREK 323 (327)
T ss_pred HHHHhcccceec--ChHHHHHHHHHHHHHh
Confidence 999875557765 8999999999999875
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=310.56 Aligned_cols=304 Identities=33% Similarity=0.527 Sum_probs=248.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC-cEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF-DAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-d~V 128 (393)
|+|||||||||||++|+++|++.||+|++++|......... .++.++.+|+.+.+.+.+.+ ..+ |+|
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~--~~~~d~v 68 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELA--KGVPDAV 68 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHH--hcCCCEE
Confidence 35999999999999999999999999999998655433111 36788999999998888888 455 999
Q ss_pred EEcccccCccCCcc-ChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC-CCCCCCCC-CCCCCCChHHHHHHH
Q 016208 129 MHFAAVAYVGESTL-EPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP-DKMPITES-TPQKPINPYGKAKKM 205 (393)
Q Consensus 129 i~~A~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~-~~~~p~~~Y~~sK~~ 205 (393)
||+|+......... ++...+..|+.++.+++++|++.+++++||+||.++|+.. ...+++|+ .+..|.++|+.+|.+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~ 148 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLA 148 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHH
Confidence 99999875543322 4567999999999999999999999999999998888765 34478998 788888899999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|+.+..+....+++++++||++||||+....+. +.+...++..+..+.+.+...+ ++...+++
T Consensus 149 ~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 212 (314)
T COG0451 149 AEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLS----------SGVVSAFIRQLLKGEPIIVIGG------DGSQTRDF 212 (314)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCC----------cCcHHHHHHHHHhCCCcceEeC------CCceeEee
Confidence 9999999988889999999999999998664311 1345555555666654345544 77888999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCC-cccHHHHHHHHHHHhCCCcc-eEEcc--CCCCCCcceecCHHHHHhhC
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGK-GRSVKEFVEACKKATGVNIK-VEYLS--RRPGDYAEVYSDPSKIRDEL 361 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~-~~s~~el~~~i~~~~g~~~~-~~~~~--~~~~~~~~~~~d~~k~~~~l 361 (393)
+|++|++++++.+++.+... +||+++++ .+++.|+++.+.+.+|.+.+ ....+ ..........+|.+|++..|
T Consensus 213 i~v~D~a~~~~~~~~~~~~~---~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 289 (314)
T COG0451 213 VYVDDVADALLLALENPDGG---VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAAL 289 (314)
T ss_pred EeHHHHHHHHHHHHhCCCCc---EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHh
Confidence 99999999999999976554 99999997 89999999999999998866 44444 23334456778999999999
Q ss_pred CCceeccCHHHHHHHHHHHHHhcc
Q 016208 362 NWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
||.|++ ++++++.++++|+....
T Consensus 290 g~~p~~-~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 290 GWEPKV-SLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCCCC-CHHHHHHHHHHHHHHhh
Confidence 999997 89999999999997753
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=317.01 Aligned_cols=306 Identities=17% Similarity=0.217 Sum_probs=222.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+.++|||||||||||++|+++|+++|++|++++|............ .......++.++.+|+.+.+.+.+++ .++|+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~v~~Dl~d~~~~~~~~--~~~d~ 80 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLL-DLPGATTRLTLWKADLAVEGSFDDAI--RGCTG 80 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHH-hccCCCCceEEEEecCCChhhHHHHH--hCCCE
Confidence 4479999999999999999999999999999988543222111111 11111135788999999999999999 68999
Q ss_pred EEEcccccCccCCccCh-HHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCC-CCC-CCCCCC---------CC
Q 016208 128 VMHFAAVAYVGESTLEP-LRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPD-KMP-ITESTP---------QK 194 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~-~~~-~~E~~~---------~~ 194 (393)
|||+|+..... ..++ ...+++|+.++.+++++|.+.+ +++|||+||.++|+... ..+ ++|+.. ..
T Consensus 81 ViH~A~~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 158 (351)
T PLN02650 81 VFHVATPMDFE--SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKM 158 (351)
T ss_pred EEEeCCCCCCC--CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccc
Confidence 99999865422 2233 4688999999999999999876 78999999998776432 223 566532 23
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
|.++|+.+|..+|.+++.|++++|++++++||+++|||+...... . .++..+ .. ..+.. . ..+
T Consensus 159 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~---~-------~~~~~~-~~-~~~~~-~-~~~--- 221 (351)
T PLN02650 159 TGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMP---P-------SLITAL-SL-ITGNE-A-HYS--- 221 (351)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCC---c-------cHHHHH-HH-hcCCc-c-ccC---
Confidence 456899999999999999998899999999999999997542100 0 222221 11 11221 1 111
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCC-cceEEccCCCCCCcceecC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-IKVEYLSRRPGDYAEVYSD 353 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d 353 (393)
....++|+|++|+|++++.+++.+... +.| +++++.+|+.|+++.+.+.++.. .+.. .+....+.....+|
T Consensus 222 ----~~~~r~~v~V~Dva~a~~~~l~~~~~~--~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d 293 (351)
T PLN02650 222 ----IIKQGQFVHLDDLCNAHIFLFEHPAAE--GRY-ICSSHDATIHDLAKMLREKYPEYNIPAR-FPGIDEDLKSVEFS 293 (351)
T ss_pred ----cCCCcceeeHHHHHHHHHHHhcCcCcC--ceE-EecCCCcCHHHHHHHHHHhCcccCCCCC-CCCcCcccccccCC
Confidence 123479999999999999999865443 478 55677899999999999987632 2211 12222344455678
Q ss_pred HHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 354 PSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 354 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
++|++ .|||+|++ +++++|+++++|+++..
T Consensus 294 ~~k~~-~lG~~p~~-~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 294 SKKLT-DLGFTFKY-SLEDMFDGAIETCREKG 323 (351)
T ss_pred hHHHH-HhCCCCCC-CHHHHHHHHHHHHHHcC
Confidence 99975 79999999 89999999999998753
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=311.85 Aligned_cols=277 Identities=24% Similarity=0.260 Sum_probs=215.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
||||||||+|+||++|++.|.++|++|++++|. ..|+.|.+++.+.++..+||+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 799999999999999999999999999998663 27999999999999888999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
||||+..++.|+.++...+++|+.++.+|++.|.+.++ ++||+||..||++..+.+++|+++++|.+.||.+|+++|+.
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~~ 135 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQA 135 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHHH
Confidence 99999988889999999999999999999999999998 89999999999988777899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+++.. .+.+|+|++.+||+... .++.++++.+..+++ +.+. .++.++.+|++
T Consensus 136 v~~~~----~~~~IlR~~~~~g~~~~---------------~~~~~~~~~~~~~~~-i~~~--------~d~~~~p~~~~ 187 (286)
T PF04321_consen 136 VRAAC----PNALILRTSWVYGPSGR---------------NFLRWLLRRLRQGEP-IKLF--------DDQYRSPTYVD 187 (286)
T ss_dssp HHHH-----SSEEEEEE-SEESSSSS---------------SHHHHHHHHHHCTSE-EEEE--------SSCEE--EEHH
T ss_pred HHHhc----CCEEEEecceecccCCC---------------chhhhHHHHHhcCCe-eEee--------CCceeCCEEHH
Confidence 99843 38999999999999433 789999999988887 7774 46788999999
Q ss_pred HHHHHHHHHHhcCCC--CCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccC-----CCCCCcceecCHHHHHhhC
Q 016208 290 DLVDAHVLALANAKP--GKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSR-----RPGDYAEVYSDPSKIRDEL 361 (393)
Q Consensus 290 Dva~a~~~~l~~~~~--~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~-----~~~~~~~~~~d~~k~~~~l 361 (393)
|+|+++..++++... ...++||+++++.+|+.|+++.+++.+|.+.+ +...+. ....+.+..+|++|+++.|
T Consensus 188 dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~ 267 (286)
T PF04321_consen 188 DLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLL 267 (286)
T ss_dssp HHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCT
T ss_pred HHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHcc
Confidence 999999999996543 12369999999999999999999999998873 333321 2334567889999999999
Q ss_pred CCceeccCHHHHHHHHHHHH
Q 016208 362 NWTARFTDLQGSLQIAWRWQ 381 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~ 381 (393)
|++++ +|+++|+++++.|
T Consensus 268 g~~~~--~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 268 GIKPP--PWREGLEELVKQY 285 (286)
T ss_dssp TS-----BHHHHHHHHHHHH
T ss_pred CCCCc--CHHHHHHHHHHHh
Confidence 99987 7999999998865
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=291.67 Aligned_cols=273 Identities=22% Similarity=0.248 Sum_probs=241.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||++|++|.+|++.|. .+++|++++|.. +|++|++.+.+++.+.+||+||
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~------------------------~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAE------------------------LDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCcc------------------------ccccChHHHHHHHHhhCCCEEE
Confidence 459999999999999999998 778999987622 6999999999999988999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+++.++.++.+++..+.+|..++.+++++|.+.|. ++||+||.+||++..+.++.|+++++|.+.||.||+++|+.
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~ 134 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEA 134 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998 89999999999999888999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++. .+.+.+|+|.+++||.... +|+..+++...++++ +.+. .++..+.+++.
T Consensus 135 v~~----~~~~~~I~Rtswv~g~~g~---------------nFv~tml~la~~~~~-l~vv--------~Dq~gsPt~~~ 186 (281)
T COG1091 135 VRA----AGPRHLILRTSWVYGEYGN---------------NFVKTMLRLAKEGKE-LKVV--------DDQYGSPTYTE 186 (281)
T ss_pred HHH----hCCCEEEEEeeeeecCCCC---------------CHHHHHHHHhhcCCc-eEEE--------CCeeeCCccHH
Confidence 998 4568999999999998642 799999999999988 7774 47888899999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEE------ccCCCCCCcceecCHHHHHhhCCC
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY------LSRRPGDYAEVYSDPSKIRDELNW 363 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~------~~~~~~~~~~~~~d~~k~~~~lG~ 363 (393)
|+|+++..+++..... ++||+++....||.|+++.|.+.++.+..... .+....++....+|+.|+...+|+
T Consensus 187 dlA~~i~~ll~~~~~~--~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~ 264 (281)
T COG1091 187 DLADAILELLEKEKEG--GVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGL 264 (281)
T ss_pred HHHHHHHHHHhccccC--cEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCC
Confidence 9999999999876554 49999998889999999999999986653321 223344556677999999999999
Q ss_pred ceeccCHHHHHHHHHHH
Q 016208 364 TARFTDLQGSLQIAWRW 380 (393)
Q Consensus 364 ~p~~~~~~e~l~~~~~~ 380 (393)
.|+ +|+++++.+++.
T Consensus 265 ~~~--~w~~~l~~~~~~ 279 (281)
T COG1091 265 SLP--EWREALKALLDE 279 (281)
T ss_pred CCc--cHHHHHHHHHhh
Confidence 888 799999998764
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=306.38 Aligned_cols=303 Identities=25% Similarity=0.368 Sum_probs=233.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--CCCcEE
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--NAFDAV 128 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~V 128 (393)
|||||||||||+++++.|.+.|+ +|++++|..+.. .+..+ ....+.+|+.+.+.+..+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-----~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-----KFLNL-----ADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-----hhhhh-----hheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 69999999999999999999997 798887644321 11111 123566888888777766531 489999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCC-CCCCChHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTP-QKPINPYGKAKKMSE 207 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~-~~p~~~Y~~sK~~~E 207 (393)
||+|+.... ...++...+++|+.++.+++++|++.++ ++||+||.++|+.... +++|+++ ..|.++|+.+|..+|
T Consensus 71 vh~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~-~~~e~~~~~~p~~~Y~~sK~~~e 146 (314)
T TIGR02197 71 FHQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLFD 146 (314)
T ss_pred EECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC-CcccccCcCCCCCHHHHHHHHHH
Confidence 999997543 3456777899999999999999999887 7999999999997654 5666655 458999999999999
Q ss_pred HHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 208 DIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 208 ~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
.+++++... .+++++++||+++|||+.....+ ...++..++..+..+.+ +.+.+.....++|++.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 216 (314)
T TIGR02197 147 QYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGK---------MASVAFHLFNQIKAGGN-VKLFKSSEGFKDGEQLRDF 216 (314)
T ss_pred HHHHHHhHhhccCCceEEEEEeeccCCCCCCCCC---------cccHHHHHHHHHhcCCC-eEEecCccccCCCCceeee
Confidence 999886432 46799999999999997432100 01455566666666666 6665433334578899999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCC----CCcceecCHHHHHhhC
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG----DYAEVYSDPSKIRDEL 361 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~d~~k~~~~l 361 (393)
+|++|+++++..++.. .. +++||+++++++|++|+++.+.+.+|.+.++...+.... ......+|++|+++.+
T Consensus 217 i~v~D~a~~i~~~~~~-~~--~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 293 (314)
T TIGR02197 217 VYVKDVVDVNLWLLEN-GV--SGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAG 293 (314)
T ss_pred EEHHHHHHHHHHHHhc-cc--CceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhc
Confidence 9999999999999987 32 369999999999999999999999997754443322211 1234568999999999
Q ss_pred CCceeccCHHHHHHHHHHHHH
Q 016208 362 NWTARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~ 382 (393)
||+|++ +++|+++++++|++
T Consensus 294 ~~~p~~-~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 294 YYGPFT-TLEEGVKDYVQWLL 313 (314)
T ss_pred CCCCcc-cHHHHHHHHHHHHh
Confidence 999999 99999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=305.91 Aligned_cols=301 Identities=20% Similarity=0.203 Sum_probs=222.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++|||||||||||++|+++|+++|++|+++.|........ ..+........+++++.+|+.+++.+.+++ .++|+|
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~v 81 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKT-EHLLALDGAKERLKLFKADLLEESSFEQAI--EGCDAV 81 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHH-HHHHhccCCCCceEEEecCCCCcchHHHHH--hCCCEE
Confidence 47999999999999999999999999999988754332211 111111111246899999999999999999 689999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceee--cCC---CCCCCCCCCCCC------CC
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATY--GEP---DKMPITESTPQK------PI 196 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vy--g~~---~~~~~~E~~~~~------p~ 196 (393)
||+|+...... .......++.|+.++.+++++|++. +++|+|++||.++| +.. .+.+++|+.+.. +.
T Consensus 82 ih~A~~~~~~~-~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~ 160 (322)
T PLN02986 82 FHTASPVFFTV-KDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETK 160 (322)
T ss_pred EEeCCCcCCCC-CCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccc
Confidence 99999754321 1222357899999999999999986 68999999998764 332 234577876543 35
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
++|+.+|.++|.+++.|+++++++++++||+++|||...+.. .+...++..+..+.+ + +
T Consensus 161 ~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~------------~~~~~~~~~~~~g~~-~--~------ 219 (322)
T PLN02986 161 NWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTL------------NFSVELIVDFINGKN-L--F------ 219 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCC------------CccHHHHHHHHcCCC-C--C------
Confidence 789999999999999999888999999999999999743210 222233333334433 1 1
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcc--eecCH
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE--VYSDP 354 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~--~~~d~ 354 (393)
+.+.++|+|++|+|++++.+++.+... ++||++ ++.+|+.|+++.+++.++. ..+... ....+... ..+|+
T Consensus 220 --~~~~~~~v~v~Dva~a~~~al~~~~~~--~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~d~ 292 (322)
T PLN02986 220 --NNRFYRFVDVRDVALAHIKALETPSAN--GRYIID-GPIMSVNDIIDILRELFPD-LCIADT-NEESEMNEMICKVCV 292 (322)
T ss_pred --CCcCcceeEHHHHHHHHHHHhcCcccC--CcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC-CccccccccCCccCH
Confidence 245689999999999999999876543 589995 5689999999999999873 221111 11112222 24899
Q ss_pred HHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 355 SKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 355 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+|++ .|||+|+ +++|+|+++++|+++.
T Consensus 293 ~~~~-~lg~~~~--~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 293 EKVK-NLGVEFT--PMKSSLRDTILSLKEK 319 (322)
T ss_pred HHHH-HcCCccc--CHHHHHHHHHHHHHHc
Confidence 9986 5999986 7999999999999763
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=297.30 Aligned_cols=274 Identities=20% Similarity=0.214 Sum_probs=225.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
+|||||||||||++|+++|+++|++|++++|. .+|+.+.+++.++++..++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 58999999999999999999999999998762 279999999999997667899999
Q ss_pred cccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 016208 131 FAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDII 210 (393)
Q Consensus 131 ~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~ 210 (393)
+|+..........+...+++|+.++.+++++|++.+. ++|++||.++|+.....+++|+++..|.++|+.+|..+|+++
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~ 135 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAI 135 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHHH
Confidence 9997654434456677899999999999999998886 899999999998766678999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHH
Q 016208 211 IDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290 (393)
Q Consensus 211 ~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D 290 (393)
+.+ +++++++||+.+||++... .++..++..+..+.+ +.+.+ ++.++++|++|
T Consensus 136 ~~~----~~~~~ilR~~~v~G~~~~~--------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~v~v~D 188 (287)
T TIGR01214 136 RAA----GPNALIVRTSWLYGGGGGR--------------NFVRTMLRLAGRGEE-LRVVD--------DQIGSPTYAKD 188 (287)
T ss_pred HHh----CCCeEEEEeeecccCCCCC--------------CHHHHHHHHhhcCCC-ceEec--------CCCcCCcCHHH
Confidence 874 6799999999999997321 456666777766665 55543 35789999999
Q ss_pred HHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce------EEc-----cCCCCCCcceecCHHHHHh
Q 016208 291 LVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV------EYL-----SRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 291 va~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~------~~~-----~~~~~~~~~~~~d~~k~~~ 359 (393)
+|+++..+++.+.. .+++||+++++.+|+.|+++.+.+.+|.+... ... +..........+|++|+++
T Consensus 189 va~a~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 267 (287)
T TIGR01214 189 LARVIAALLQRLAR-ARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVK 267 (287)
T ss_pred HHHHHHHHHhhccC-CCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHH
Confidence 99999999986532 23699999999999999999999999976431 111 1112223456799999999
Q ss_pred hCCCceeccCHHHHHHHHHH
Q 016208 360 ELNWTARFTDLQGSLQIAWR 379 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~ 379 (393)
.|||. .+ +++++|.++++
T Consensus 268 ~lg~~-~~-~~~~~l~~~~~ 285 (287)
T TIGR01214 268 TLGTP-LP-HWREALRAYLQ 285 (287)
T ss_pred HcCCC-Cc-cHHHHHHHHHh
Confidence 99994 45 89999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=303.56 Aligned_cols=287 Identities=21% Similarity=0.298 Sum_probs=225.0
Q ss_pred CCCcEEEEE----cCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhh----hhhhhhcCCCCccEEEEccCCCHHHHHH
Q 016208 47 PGVTHVLVT----GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAV----KVLQELFPQPGQLQFIYADLGDAKAVNK 118 (393)
Q Consensus 47 ~~~~~IlIt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 118 (393)
..+|+|||| |||||||++|+++|++.||+|++++|......... ..+.++. ..+++++.+|+.+ +.+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d---~~~ 124 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS--SAGVKTVWGDPAD---VKS 124 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh--hcCceEEEecHHH---HHh
Confidence 455799999 99999999999999999999999998653311100 0011111 1368999999876 444
Q ss_pred HHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCCh
Q 016208 119 IFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINP 198 (393)
Q Consensus 119 ~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~ 198 (393)
++...++|+|||+++. +..++.+++++|++.|+++|||+||.++|+.....+..|+++..|..
T Consensus 125 ~~~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~- 187 (378)
T PLN00016 125 KVAGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKA- 187 (378)
T ss_pred hhccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcc-
Confidence 4444689999999752 13468899999999999999999999999987666788887766654
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCC
Q 016208 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD 278 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 278 (393)
+|..+|.+++. .+++++++||+++|||+... .+..+++..+..+.+ +.+.| +
T Consensus 188 ---sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~--------------~~~~~~~~~~~~~~~-i~~~g------~ 239 (378)
T PLN00016 188 ---GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK--------------DCEEWFFDRLVRGRP-VPIPG------S 239 (378)
T ss_pred ---hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC--------------chHHHHHHHHHcCCc-eeecC------C
Confidence 89999998765 68999999999999996431 345566777777776 77766 7
Q ss_pred CccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC----------CCCCc
Q 016208 279 GTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR----------PGDYA 348 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----------~~~~~ 348 (393)
+++.++|+|++|+|++++.+++.+... +++||+++++.+|+.|+++.+.+.+|.+.++...+.. +....
T Consensus 240 g~~~~~~i~v~Dva~ai~~~l~~~~~~-~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~ 318 (378)
T PLN00016 240 GIQLTQLGHVKDLASMFALVVGNPKAA-GQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQ 318 (378)
T ss_pred CCeeeceecHHHHHHHHHHHhcCcccc-CCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCcccccccccccc
Confidence 889999999999999999999875433 3799999999999999999999999988765432221 11223
Q ss_pred ceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 349 EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 349 ~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.+.+|++|++++|||+|++ +++|+|+++++||+.+.
T Consensus 319 ~~~~d~~ka~~~LGw~p~~-~l~egl~~~~~~~~~~~ 354 (378)
T PLN00016 319 HFFASPRKAKEELGWTPKF-DLVEDLKDRYELYFGRG 354 (378)
T ss_pred ccccCHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhcC
Confidence 4567999999999999999 89999999999998763
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=292.93 Aligned_cols=294 Identities=23% Similarity=0.338 Sum_probs=230.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|+||||+||||++|++.|+++|++|++++|....... +. ..+++++.+|+.+.+++.+++ .++|+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~-----~~~~~~~~~D~~~~~~l~~~~--~~~d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN----LE-----GLDVEIVEGDLRDPASLRKAV--AGCRALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc----cc-----cCCceEEEeeCCCHHHHHHHH--hCCCEEE
Confidence 589999999999999999999999999999985432211 10 136889999999999999999 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC-CCCCCCCCCCCCCC---CChHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE-PDKMPITESTPQKP---INPYGKAKKM 205 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~-~~~~~~~E~~~~~p---~~~Y~~sK~~ 205 (393)
|+|+.... ...++...++.|+.++.+++++|.+.+++++|++||..+|+. ..+.+++|+.+..| .++|+.+|..
T Consensus 70 ~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~ 147 (328)
T TIGR03466 70 HVAADYRL--WAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFL 147 (328)
T ss_pred Eeceeccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHH
Confidence 99986432 244677889999999999999999999999999999999985 34457888887766 4689999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|+.++.++...+++++++||+++||++..... .....+...+.+..+ . .. +...+|
T Consensus 148 ~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~------------~~~~~~~~~~~~~~~-~--~~--------~~~~~~ 204 (328)
T TIGR03466 148 AEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPT------------PTGRIIVDFLNGKMP-A--YV--------DTGLNL 204 (328)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCC------------cHHHHHHHHHcCCCc-e--ee--------CCCcce
Confidence 999999998878999999999999999743210 111223333333332 1 11 123689
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC----------------CCCC--
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR----------------PGDY-- 347 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----------------~~~~-- 347 (393)
+|++|+|++++.+++.+.. +..|+++ ++.+|+.|+++.+.+.+|.+.+....|.. ....
T Consensus 205 i~v~D~a~a~~~~~~~~~~--~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (328)
T TIGR03466 205 VHVDDVAEGHLLALERGRI--GERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRV 281 (328)
T ss_pred EEHHHHHHHHHHHHhCCCC--CceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999987543 3688885 67899999999999999976554333211 0011
Q ss_pred ---------cceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 348 ---------AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 348 ---------~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
....+|++|+++.|||+|. +++++|.++++||+++
T Consensus 282 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~--~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 282 TVDGVRMAKKKMFFSSAKAVRELGYRQR--PAREALRDAVEWFRAN 325 (328)
T ss_pred CHHHHHHHhccCCCChHHHHHHcCCCCc--CHHHHHHHHHHHHHHh
Confidence 2456899999999999994 8999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=289.96 Aligned_cols=254 Identities=27% Similarity=0.397 Sum_probs=205.4
Q ss_pred EEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 53 LVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 53 lItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
|||||+||||++|+++|+++| ++|+++++....... ..+.. .+...++.+|++|++++.+++ .++|+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~----~~~~~~~~~Di~d~~~l~~a~--~g~d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK----SGVKEYIQGDITDPESLEEAL--EGVDVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc----ccceeEEEeccccHHHHHHHh--cCCceEEE
Confidence 699999999999999999999 799998875543221 11111 133449999999999999999 89999999
Q ss_pred cccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC-CCCC---CCCCCCC--CCCChHHHHHH
Q 016208 131 FAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP-DKMP---ITESTPQ--KPINPYGKAKK 204 (393)
Q Consensus 131 ~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~-~~~~---~~E~~~~--~p~~~Y~~sK~ 204 (393)
+|++.+... .......+++|+.||++|+++|++.+++++||+||.++++.. ...+ .+|+.|. .+.+.|+.||+
T Consensus 73 ~Aa~~~~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~ 151 (280)
T PF01073_consen 73 TAAPVPPWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKA 151 (280)
T ss_pred eCccccccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHH
Confidence 999875532 456778999999999999999999999999999999998762 1222 3565543 35779999999
Q ss_pred HHHHHHHHHHh---h--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC
Q 016208 205 MSEDIIIDFSK---T--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 205 ~~E~~~~~~~~---~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 279 (393)
++|++++++.. + ..+.+++|||+.||||++. .+.+.+...+..+.. ....| ++
T Consensus 152 ~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~---------------~~~~~~~~~~~~g~~-~~~~g------~~ 209 (280)
T PF01073_consen 152 LAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQ---------------RLVPRLVKMVRSGLF-LFQIG------DG 209 (280)
T ss_pred HHHHHHHhhcccccccccceeEEEEeccEEeCcccc---------------cccchhhHHHHhccc-ceeec------CC
Confidence 99999999765 2 3499999999999999865 567777777777754 44445 77
Q ss_pred ccccccccHHHHHHHHHHHHhc---C---CCCCcceEEecCCCccc-HHHHHHHHHHHhCCCcce
Q 016208 280 TCVRDYIDVTDLVDAHVLALAN---A---KPGKVGIYNVGTGKGRS-VKEFVEACKKATGVNIKV 337 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~---~---~~~~~~~yni~~~~~~s-~~el~~~i~~~~g~~~~~ 337 (393)
....+++|++|+|+|++.+++. + ....|+.|+|++++++. +.+|...+.+.+|.+.+.
T Consensus 210 ~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 210 NNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred CceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 8899999999999999988762 2 33467999999999999 999999999999988765
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=260.14 Aligned_cols=298 Identities=20% Similarity=0.252 Sum_probs=250.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|++|||||++|.+|++|++.+...|. +-.++.- + + .+|+++.++.++++++.+|.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-s-k---------------------d~DLt~~a~t~~lF~~ekPt 57 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-S-K---------------------DADLTNLADTRALFESEKPT 57 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-c-c---------------------cccccchHHHHHHHhccCCc
Confidence 58999999999999999999998875 3333211 1 1 16999999999999999999
Q ss_pred EEEEcccccCc-cCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC----CCCCCC-hHH
Q 016208 127 AVMHFAAVAYV-GESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST----PQKPIN-PYG 200 (393)
Q Consensus 127 ~Vi~~A~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~p~~-~Y~ 200 (393)
+|||+|+...- -.....+...+..|+.--.|++..|.+.|++++|++.|.|.|.+....|++|.. |+.|.+ .|+
T Consensus 58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYs 137 (315)
T KOG1431|consen 58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYS 137 (315)
T ss_pred eeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHH
Confidence 99999996632 234456788999999999999999999999999999999999998888999985 444544 699
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH----HhCCCCceeEcCccccC
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA----ARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~ 276 (393)
.+|.++....++|..++|..++.+-|+++|||.+....... ..++.++.+ ...+...+.+||
T Consensus 138 yAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~s---------HVlPali~r~h~ak~~gtd~~~VwG----- 203 (315)
T KOG1431|consen 138 YAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENS---------HVLPALIHRFHEAKRNGTDELTVWG----- 203 (315)
T ss_pred HHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccc---------cchHHHHHHHHHHHhcCCceEEEec-----
Confidence 99999999999999999999999999999999877554333 455555443 444553499999
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC--cccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCH
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK--GRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDP 354 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~--~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~ 354 (393)
+|...|.|+|++|+|++++.++.+-+.- +-++++.++ .+|++|+++++.++++...+.......+.......+|+
T Consensus 204 -sG~PlRqFiys~DLA~l~i~vlr~Y~~v--Epiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasn 280 (315)
T KOG1431|consen 204 -SGSPLRQFIYSDDLADLFIWVLREYEGV--EPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASN 280 (315)
T ss_pred -CCChHHHHhhHhHHHHHHHHHHHhhcCc--cceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccch
Confidence 9999999999999999999999975544 577788876 89999999999999999999888877777777888999
Q ss_pred HHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 355 SKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 355 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
+|++ .|+|.|++++++++|.++++||.++...
T Consensus 281 sKL~-sl~pd~~ft~l~~ai~~t~~Wy~~Ny~q 312 (315)
T KOG1431|consen 281 SKLR-SLLPDFKFTPLEQAISETVQWYLDNYEQ 312 (315)
T ss_pred HHHH-HhCCCcccChHHHHHHHHHHHHHHhHHh
Confidence 9997 4899999967999999999999988654
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=298.20 Aligned_cols=295 Identities=17% Similarity=0.161 Sum_probs=219.6
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcC---CCCccEEEEccCCCHHHHHHHH
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP---QPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
...+.+|+||||||+||||++|+++|+++|++|+++.|....... .+.+..... ...++.++.+|++|.+++.+++
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~-l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEK-LREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 345778999999999999999999999999999988774321111 111111000 0135788999999999999999
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecc--eeecCC--CC--CCCCCCC--
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTC--ATYGEP--DK--MPITEST-- 191 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~--~vyg~~--~~--~~~~E~~-- 191 (393)
.++|+|||+|+...............+.|+.++.+++++|++. +++++||+||. .+||.. .. ..++|+.
T Consensus 127 --~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~ 204 (367)
T PLN02686 127 --DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWS 204 (367)
T ss_pred --HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCC
Confidence 6799999999976433211122345678999999999999986 79999999996 577642 11 2356653
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 192 ----PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 192 ----~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
+..|.++|+.+|..+|++++.+++..|++++++||++||||+.... ....++..+ .+. +
T Consensus 205 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~--------------~~~~~~~~~-~g~--~ 267 (367)
T PLN02686 205 DESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRR--------------NSTATIAYL-KGA--Q 267 (367)
T ss_pred ChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCC--------------CChhHHHHh-cCC--C
Confidence 3456778999999999999999888899999999999999974310 011122222 222 3
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC-CC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR-PG 345 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-~~ 345 (393)
++.| ++ .++|+||+|+|++++.+++.. ....+++| +++++.+++.|+++.+.+.+|.+......+.. ..
T Consensus 268 ~~~g------~g--~~~~v~V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~ 338 (367)
T PLN02686 268 EMLA------DG--LLATADVERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDD 338 (367)
T ss_pred ccCC------CC--CcCeEEHHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcC
Confidence 3333 44 357999999999999999853 11233688 88889999999999999999987776555555 67
Q ss_pred CCcceecCHHHHHhhCCCceec
Q 016208 346 DYAEVYSDPSKIRDELNWTARF 367 (393)
Q Consensus 346 ~~~~~~~d~~k~~~~lG~~p~~ 367 (393)
+...+.+|++|+++.|||.|+-
T Consensus 339 d~~~~~~d~~kl~~~l~~~~~~ 360 (367)
T PLN02686 339 TPARFELSNKKLSRLMSRTRRC 360 (367)
T ss_pred CcccccccHHHHHHHHHHhhhc
Confidence 7888999999999999999875
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=283.93 Aligned_cols=311 Identities=23% Similarity=0.280 Sum_probs=251.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
++|.+++||||+||+|+||+++|++++ .+|++++..........+.... ....+.++.+|+.+..++..++ .+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~---~~~~v~~~~~D~~~~~~i~~a~--~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF---RSGRVTVILGDLLDANSISNAF--QG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc---cCCceeEEecchhhhhhhhhhc--cC
Confidence 456899999999999999999999998 8999998755422222221111 2478999999999999999999 88
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC-CCCCCCCCC--CCCChHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK-MPITESTPQ--KPINPYGK 201 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~-~~~~E~~~~--~p~~~Y~~ 201 (393)
+ +|+|+|+...+.....++...+++|+.||.+++++|.+.+++++||+||..|+..... .--+|+.|. ....+|+.
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~ 155 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGE 155 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccch
Confidence 8 8888888777666666789999999999999999999999999999999999866544 234444433 33469999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
||+.+|+++++.+...++.+++|||+.||||++. .+++.+...++.+.. +...| +++.
T Consensus 156 sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~---------------~~~~~i~~~~~~g~~-~f~~g------~~~~ 213 (361)
T KOG1430|consen 156 SKALAEKLVLEANGSDDLYTCALRPPGIYGPGDK---------------RLLPKIVEALKNGGF-LFKIG------DGEN 213 (361)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCc---------------cccHHHHHHHHccCc-eEEee------cccc
Confidence 9999999999987667899999999999999876 889999999999887 55555 6788
Q ss_pred ccccccHHHHHHHHHHHHh----cCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCC-------------
Q 016208 282 VRDYIDVTDLVDAHVLALA----NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRR------------- 343 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~----~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~------------- 343 (393)
+.++++++.++.|++.+.. ......|+.|+|++++++...++...+.+.+|.+.+ ....|.+
T Consensus 214 ~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~ 293 (361)
T KOG1430|consen 214 LNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVY 293 (361)
T ss_pred ccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHH
Confidence 8999999999999887654 333446799999999998888888899999998877 3333311
Q ss_pred ------CCC---------CcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 344 ------PGD---------YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 344 ------~~~---------~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
... .....+|+.|+++.|||.|.. +++|++++++.|+.....
T Consensus 294 ~~l~p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~-~~~e~~~~~~~~~~~~~~ 350 (361)
T KOG1430|consen 294 FLLRPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLV-SLEEAIQRTIHWVASESD 350 (361)
T ss_pred HhccCCCCCcChhheeeeccccccCHHHHHHhhCCCCcC-CHHHHHHHHHHHHhhhhh
Confidence 000 125568999999999999999 999999999998866543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=288.26 Aligned_cols=276 Identities=22% Similarity=0.304 Sum_probs=218.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|+||||||+||||++|+++|+++| ++|++++|...... .+..... ..++.++.+|++|.+++.+++ .++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~----~~~~~~~-~~~~~~v~~Dl~d~~~l~~~~--~~i 75 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW----EMQQKFP-APCLRFFIGDVRDKERLTRAL--RGV 75 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH----HHHHHhC-CCcEEEEEccCCCHHHHHHHH--hcC
Confidence 35899999999999999999999986 78999887533211 1111111 146889999999999999999 679
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|+|||+||.........++...+++|+.++.+++++|.+.+++++|++||.. +..|.++|+.+|..
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~--------------~~~p~~~Y~~sK~~ 141 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK--------------AANPINLYGATKLA 141 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--------------CCCCCCHHHHHHHH
Confidence 9999999976544445567789999999999999999999988999999942 33467899999999
Q ss_pred HHHHHHHHH---hhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccc
Q 016208 206 SEDIIIDFS---KTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282 (393)
Q Consensus 206 ~E~~~~~~~---~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 282 (393)
+|.+++.++ ...|++++++||++||||+. .+++.+...+..+.+.+++. ++.+.
T Consensus 142 ~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~----------------~~i~~~~~~~~~~~~~~~i~-------~~~~~ 198 (324)
T TIGR03589 142 SDKLFVAANNISGSKGTRFSVVRYGNVVGSRG----------------SVVPFFKSLKEEGVTELPIT-------DPRMT 198 (324)
T ss_pred HHHHHHHHHhhccccCcEEEEEeecceeCCCC----------------CcHHHHHHHHHhCCCCeeeC-------CCCce
Confidence 999997754 34799999999999999852 56777777777665225554 47888
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCC-cceecCHHHHHhhC
Q 016208 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDY-AEVYSDPSKIRDEL 361 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~-~~~~~d~~k~~~~l 361 (393)
++|+|++|++++++.+++.... +++| ++++..+++.|+++.+.+... +...+.++++. ....+|++|+++.|
T Consensus 199 r~~i~v~D~a~a~~~al~~~~~--~~~~-~~~~~~~sv~el~~~i~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~l 271 (324)
T TIGR03589 199 RFWITLEQGVNFVLKSLERMLG--GEIF-VPKIPSMKITDLAEAMAPECP----HKIVGIRPGEKLHEVMITEDDARHTY 271 (324)
T ss_pred EeeEEHHHHHHHHHHHHhhCCC--CCEE-ccCCCcEEHHHHHHHHHhhCC----eeEeCCCCCchhHhhhcChhhhhhhc
Confidence 9999999999999999986432 3688 566778999999999998642 33334444443 44668999999999
Q ss_pred CCceeccCHHHHHH
Q 016208 362 NWTARFTDLQGSLQ 375 (393)
Q Consensus 362 G~~p~~~~~~e~l~ 375 (393)
||+|++ ++++++.
T Consensus 272 g~~~~~-~l~~~~~ 284 (324)
T TIGR03589 272 ELGDYY-AILPSIS 284 (324)
T ss_pred CCCCeE-EEccccc
Confidence 999999 8999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=274.32 Aligned_cols=236 Identities=35% Similarity=0.546 Sum_probs=203.9
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
|||||||||||++|+++|+++|++|+.+.|........... .+++++.+|+.+.+.+.++++..++|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~--------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK--------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH--------TTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc--------ceEEEEEeeccccccccccccccCceEEEEe
Confidence 79999999999999999999999999988865543211110 2789999999999999999988788999999
Q ss_pred ccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016208 132 AAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIII 211 (393)
Q Consensus 132 A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~ 211 (393)
|+..............++.|+.++.+++++|++.+++++|++||..+|+.....+++|+.+..|.++|+.+|..+|++++
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~ 152 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLR 152 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99753222335778889999999999999999999999999999999999877789999999999999999999999999
Q ss_pred HHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHH
Q 016208 212 DFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291 (393)
Q Consensus 212 ~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dv 291 (393)
.+.++.+++++++||+++|||. . ... ..+.+++.++..+.++++ +.+++ ++++.++++|++|+
T Consensus 153 ~~~~~~~~~~~~~R~~~vyG~~-~--~~~-------~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~i~v~D~ 215 (236)
T PF01370_consen 153 DYAKKYGLRVTILRPPNVYGPG-N--PNN-------NSSSFLPSLIRQALKGKP-IKIPG------DGSQVRDFIHVDDL 215 (236)
T ss_dssp HHHHHHTSEEEEEEESEEESTT-S--SSS-------STSSHHHHHHHHHHTTSS-EEEES------TSSCEEEEEEHHHH
T ss_pred cccccccccccccccccccccc-c--ccc-------ccccccchhhHHhhcCCc-ccccC------CCCCccceEEHHHH
Confidence 9998889999999999999998 0 000 112788999999999998 88888 89999999999999
Q ss_pred HHHHHHHHhcCCCCCcceEEec
Q 016208 292 VDAHVLALANAKPGKVGIYNVG 313 (393)
Q Consensus 292 a~a~~~~l~~~~~~~~~~yni~ 313 (393)
|++++.+++++.. .+++|||+
T Consensus 216 a~~~~~~~~~~~~-~~~~yNig 236 (236)
T PF01370_consen 216 AEAIVAALENPKA-AGGIYNIG 236 (236)
T ss_dssp HHHHHHHHHHSCT-TTEEEEES
T ss_pred HHHHHHHHhCCCC-CCCEEEeC
Confidence 9999999998872 34799995
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=256.66 Aligned_cols=316 Identities=24% Similarity=0.282 Sum_probs=256.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCc-hhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNM-GAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+++.||||-||+-|++|++.|+++||+|.++.|.+.... ..............++.++.||++|...+.++++..+||-
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 579999999999999999999999999999988643322 1112222222223458899999999999999999999999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|+|+|+.+++..+...|..+.+++..|+.++||+.+-.+. .||.+.||.-.||.-...|.+|.+|..|.+||+.+|..
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKlY 161 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLY 161 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHHHHHH
Confidence 9999999999889999999999999999999999998753 48999999999999888899999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+--+...|.+.+|+-.+.-++.+--+|.....|=. +-+...+..+..+..... +++.-+..|||
T Consensus 162 a~W~tvNYResYgl~AcnGILFNHESP~Rge~FVT----------RKIt~ava~Ik~G~q~~l------~lGNldAkRDW 225 (345)
T COG1089 162 AYWITVNYRESYGLFACNGILFNHESPLRGETFVT----------RKITRAVARIKLGLQDKL------YLGNLDAKRDW 225 (345)
T ss_pred HHheeeehHhhcCceeecceeecCCCCCCccceeh----------HHHHHHHHHHHccccceE------Eeccccccccc
Confidence 99999999999999999888888777753321100 112222333444443222 23478899999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceE------------------Ecc---CCC
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE------------------YLS---RRP 344 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~------------------~~~---~~~ 344 (393)
-|..|-++++..+++++.+ +.|.|++++..|++|+++...+..|.+.++. .++ .++
T Consensus 226 G~A~DYVe~mwlmLQq~~P---ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRP 302 (345)
T COG1089 226 GHAKDYVEAMWLMLQQEEP---DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRP 302 (345)
T ss_pred cchHHHHHHHHHHHccCCC---CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCc
Confidence 9999999999999998776 4999999999999999999999999776643 111 234
Q ss_pred CCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 345 ~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
.+..-+..|++|+++.|||+|++ +++|.+++|+++-.+.
T Consensus 303 aEV~~Llgdp~KA~~~LGW~~~~-~~~elv~~Mv~~dl~~ 341 (345)
T COG1089 303 AEVDLLLGDPTKAKEKLGWRPEV-SLEELVREMVEADLEA 341 (345)
T ss_pred hhhhhhcCCHHHHHHHcCCcccc-CHHHHHHHHHHHHHHH
Confidence 45556678999999999999999 9999999999987654
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=261.69 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=202.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.|+||||||+||||++|+++|+++|++|+... +|+.+.+.+...++..++|+|
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D~V 61 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPTHV 61 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCCEE
Confidence 37999999999999999999999999997531 244566777777766689999
Q ss_pred EEcccccCcc---CCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC------CCCCCCCCCCC-CCCh
Q 016208 129 MHFAAVAYVG---ESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD------KMPITESTPQK-PINP 198 (393)
Q Consensus 129 i~~A~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~------~~~~~E~~~~~-p~~~ 198 (393)
||+||..... .+..++...+++|+.++.+|+++|++.+++ +|++||.++|+... +.+++|++++. |.++
T Consensus 62 iH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~ 140 (298)
T PLN02778 62 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSF 140 (298)
T ss_pred EECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCc
Confidence 9999987532 245678899999999999999999999985 67778888987532 22477766555 4589
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCC
Q 016208 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD 278 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 278 (393)
|+.+|.++|.++..|+ +..++|+..++|++. .....++..+..+.+ +...+
T Consensus 141 Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~----------------~~~~~fi~~~~~~~~-~~~~~------- 191 (298)
T PLN02778 141 YSKTKAMVEELLKNYE-----NVCTLRVRMPISSDL----------------SNPRNFITKITRYEK-VVNIP------- 191 (298)
T ss_pred hHHHHHHHHHHHHHhh-----ccEEeeecccCCccc----------------ccHHHHHHHHHcCCC-eeEcC-------
Confidence 9999999999999875 357889888787642 112234566666665 33332
Q ss_pred CccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEE---ccCC---CCCCcceec
Q 016208 279 GTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY---LSRR---PGDYAEVYS 352 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~---~~~~---~~~~~~~~~ 352 (393)
.+|+|++|++++++.+++... . ++||+++++.+|+.|+++.+++.+|.+.++.. .+.. .....+..+
T Consensus 192 ----~s~~yv~D~v~al~~~l~~~~-~--g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L 264 (298)
T PLN02778 192 ----NSMTILDELLPISIEMAKRNL-T--GIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNEL 264 (298)
T ss_pred ----CCCEEHHHHHHHHHHHHhCCC-C--CeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccc
Confidence 369999999999999987543 2 59999999999999999999999996533211 1110 011113369
Q ss_pred CHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 353 DPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 353 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++|+++.++-.++ ..+++++..++-.+..
T Consensus 265 d~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~ 294 (298)
T PLN02778 265 DTTKLKREFPELLP--IKESLIKYVFEPNKKT 294 (298)
T ss_pred cHHHHHHhcccccc--hHHHHHHHHHHHHHhh
Confidence 99999998876555 6888888887777544
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=269.43 Aligned_cols=272 Identities=17% Similarity=0.205 Sum_probs=208.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|+|||||||+|++|+++|+++||+|++++|...... .+. ..+++++.+|+.|++++.+++ .++|+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~----~l~-----~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS----FLK-----EWGAELVYGDLSLPETLPPSF--KGVTAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh----hHh-----hcCCEEEECCCCCHHHHHHHH--CCCCEEE
Confidence 58999999999999999999999999999998542211 111 147899999999999999999 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+++.. ..++...+++|+.++.+++++|+++++++||++||.++.. .+..+|..+|..+|++
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-------------~~~~~~~~~K~~~e~~ 131 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-------------YPYIPLMKLKSDIEQK 131 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-------------cCCChHHHHHHHHHHH
Confidence 998642 2234557788999999999999999999999999954321 1235789999999998
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++. .+++++++||+.+|+. ++......+..+.+ +.+. ++.+.++|+|++
T Consensus 132 l~~----~~l~~tilRp~~~~~~-------------------~~~~~~~~~~~~~~-~~~~-------~~~~~~~~i~v~ 180 (317)
T CHL00194 132 LKK----SGIPYTIFRLAGFFQG-------------------LISQYAIPILEKQP-IWIT-------NESTPISYIDTQ 180 (317)
T ss_pred HHH----cCCCeEEEeecHHhhh-------------------hhhhhhhhhccCCc-eEec-------CCCCccCccCHH
Confidence 865 7899999999988863 12111112222333 4443 466778999999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCC-----------------C------
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG-----------------D------ 346 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-----------------~------ 346 (393)
|+|++++.+++.+.. .+++||+++++.+|+.|+++.+.+.+|.+..+...|.+.. .
T Consensus 181 Dva~~~~~~l~~~~~-~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 259 (317)
T CHL00194 181 DAAKFCLKSLSLPET-KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVE 259 (317)
T ss_pred HHHHHHHHHhcCccc-cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 999999999986543 3479999999999999999999999998876655442100 0
Q ss_pred ---C-cceecCHHHHHhhCCCcee--ccCHHHHHHHHHHHHHh
Q 016208 347 ---Y-AEVYSDPSKIRDELNWTAR--FTDLQGSLQIAWRWQKT 383 (393)
Q Consensus 347 ---~-~~~~~d~~k~~~~lG~~p~--~~~~~e~l~~~~~~~~~ 383 (393)
. ....++.+++++.||+.|. . ++++++++.++-.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~p~~~~-~~~~~~~~~~~~~~~ 301 (317)
T CHL00194 260 ILNTSNNFSSSMAELYKIFKIDPNELI-SLEDYFQEYFERILK 301 (317)
T ss_pred HHhcCCCcCCCHHHHHHHhCCChhhhh-hHHHHHHHHHHHHHH
Confidence 0 1233467788899999983 4 799999988887655
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=264.69 Aligned_cols=278 Identities=22% Similarity=0.215 Sum_probs=202.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
|||||||||||+++++.|+++|++|++++|.......... ..+ .|+.. ..+.+.+ .++|+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~~----~~~~~-~~~~~~~--~~~D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW---------EGY----KPWAP-LAESEAL--EGADAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc---------eee----ecccc-cchhhhc--CCCCEEEEC
Confidence 6999999999999999999999999999986544321100 011 12222 3345556 689999999
Q ss_pred ccccCccC--CccChHHHHHHHHHHHHHHHHHHHhcCCc--EEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 132 AAVAYVGE--STLEPLRYYHNITSNTLVILEAMAAHKVK--TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 132 A~~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|+...... ....+...++.|+.++.+++++|++.+++ ++|++||..+||.....+++|+.+..+.+.|+..+...|
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~e 144 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDWE 144 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHHH
Confidence 99654321 22244567889999999999999999863 577778888999776668899987777777887777777
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
..+..+ +..+++++++||+.+|||+. .....+......... .. ++++++.++++|
T Consensus 145 ~~~~~~-~~~~~~~~ilR~~~v~G~~~----------------~~~~~~~~~~~~~~~-~~-------~g~~~~~~~~i~ 199 (292)
T TIGR01777 145 EAAQAA-EDLGTRVVLLRTGIVLGPKG----------------GALAKMLPPFRLGLG-GP-------LGSGRQWFSWIH 199 (292)
T ss_pred HHhhhc-hhcCCceEEEeeeeEECCCc----------------chhHHHHHHHhcCcc-cc-------cCCCCcccccEe
Confidence 776654 34689999999999999852 223333322222111 11 237889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC---------C-CCcceecCHHHH
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP---------G-DYAEVYSDPSKI 357 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---------~-~~~~~~~d~~k~ 357 (393)
++|+|+++..+++.+... ++||+++++++|+.|+++.+++.+|.+.... .|.+. . .....+++++|+
T Consensus 200 v~Dva~~i~~~l~~~~~~--g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (292)
T TIGR01777 200 IEDLVQLILFALENASIS--GPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKL 276 (292)
T ss_pred HHHHHHHHHHHhcCcccC--CceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHH
Confidence 999999999999865443 5999999999999999999999999764432 22211 1 123456788998
Q ss_pred HhhCCCceeccCHHHHH
Q 016208 358 RDELNWTARFTDLQGSL 374 (393)
Q Consensus 358 ~~~lG~~p~~~~~~e~l 374 (393)
+ ++||+|++++++|++
T Consensus 277 ~-~~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 277 L-EAGFQFQYPDLDEAL 292 (292)
T ss_pred H-hcCCeeeCcChhhcC
Confidence 7 599999997788864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=285.75 Aligned_cols=255 Identities=20% Similarity=0.200 Sum_probs=196.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|+|||||||||++++++|+++|++|++++|...... ..++.++.+|+.|.+++.+++ .++|+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~------------~~~v~~v~gDL~D~~~l~~al--~~vD~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW------------PSSADFIAADIRDATAVESAM--TGADVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc------------ccCceEEEeeCCCHHHHHHHH--hCCCEEE
Confidence 58999999999999999999999999999988532110 136889999999999999999 6899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+.... .+++|+.++.+++++|++.+++++|++||.. |..+|++
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-------------------------K~aaE~l 112 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-------------------------QPRVEQM 112 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-------------------------HHHHHHH
Confidence 99985321 4689999999999999999999999999942 8889987
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+.. ++++++++||+++|||+.. .++. .+.. .+ +...| .+...++|+|++
T Consensus 113 l~~----~gl~~vILRp~~VYGP~~~---------------~~i~----~ll~-~~-v~~~G------~~~~~~dfIhVd 161 (854)
T PRK05865 113 LAD----CGLEWVAVRCALIFGRNVD---------------NWVQ----RLFA-LP-VLPAG------YADRVVQVVHSD 161 (854)
T ss_pred HHH----cCCCEEEEEeceEeCCChH---------------HHHH----HHhc-Cc-eeccC------CCCceEeeeeHH
Confidence 754 6899999999999998521 2222 2211 12 22222 556678999999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhC---CCcceEEccCC--CCCCcceecCHHHHHhhCCCc
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG---VNIKVEYLSRR--PGDYAEVYSDPSKIRDELNWT 364 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g---~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~ 364 (393)
|+|+++..+++.+... +++||+++++.+|++|+++.+.+... .+......+.. ........+|++|+++.|||+
T Consensus 162 DVA~Ai~~aL~~~~~~-ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~ 240 (854)
T PRK05865 162 DAQRLLVRALLDTVID-SGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQ 240 (854)
T ss_pred HHHHHHHHHHhCCCcC-CCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCC
Confidence 9999999998754332 36999999999999999999887532 11111000000 011123468999999999999
Q ss_pred eeccCHHHHHHHHHHHHHhcc
Q 016208 365 ARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 365 p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|++ +++++|+++++||+.+.
T Consensus 241 P~~-sLeeGL~dti~~~r~ri 260 (854)
T PRK05865 241 PAW-NAEECLEDFTLAVRGRI 260 (854)
T ss_pred CCC-CHHHHHHHHHHHHHhhc
Confidence 999 99999999999998753
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=258.11 Aligned_cols=277 Identities=14% Similarity=0.074 Sum_probs=198.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++|||||||||||++++++|+++||+|+++.|.... ......+..+.....++.++.+|++|.+++.+++ .++|.|
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l--~~~d~v 82 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGE-TEIEKEIRGLSCEEERLKVFDVDPLDYHSILDAL--KGCSGL 82 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchh-hhHHHHHHhcccCCCceEEEEecCCCHHHHHHHH--cCCCEE
Confidence 3689999999999999999999999999999874322 1111222222212246889999999999999999 799999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecC--C---CCCCCCCCCCCCC------C
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGE--P---DKMPITESTPQKP------I 196 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~--~---~~~~~~E~~~~~p------~ 196 (393)
+|+++.... ........+++|+.++.+++++|.+. +++++|++||..+++. . ...+++|+.+..+ .
T Consensus 83 ~~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 160 (297)
T PLN02583 83 FCCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFK 160 (297)
T ss_pred EEeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcc
Confidence 998764322 12245678999999999999999886 5889999999876531 1 2336778765332 2
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
.+|+.+|..+|++++.+++..++++++|||++||||+... ... ...+. ....
T Consensus 161 ~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~---------------~~~-----~~~~~--~~~~------ 212 (297)
T PLN02583 161 LWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQ---------------HNP-----YLKGA--AQMY------ 212 (297)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCC---------------chh-----hhcCC--cccC------
Confidence 3799999999999999988789999999999999996421 111 11111 1111
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEc-cCCCCCCcceecCHH
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL-SRRPGDYAEVYSDPS 355 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~d~~ 355 (393)
+...+.||||+|+|++++.+++.+... +.|+++++....+.++++.+.+.++.- +.... ...........++++
T Consensus 213 --~~~~~~~v~V~Dva~a~~~al~~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 287 (297)
T PLN02583 213 --ENGVLVTVDVNFLVDAHIRAFEDVSSY--GRYLCFNHIVNTEEDAVKLAQMLSPLI-PSPPPYEMQGSEVYQQRIRNK 287 (297)
T ss_pred --cccCcceEEHHHHHHHHHHHhcCcccC--CcEEEecCCCccHHHHHHHHHHhCCCC-CCCCcccccCCCccccccChH
Confidence 122467999999999999999966543 589887766556788999999988632 21110 111122345668899
Q ss_pred HHHhhCCCc
Q 016208 356 KIRDELNWT 364 (393)
Q Consensus 356 k~~~~lG~~ 364 (393)
|++ .||++
T Consensus 288 k~~-~l~~~ 295 (297)
T PLN02583 288 KLN-KLMED 295 (297)
T ss_pred HHH-HhCcc
Confidence 996 58886
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=269.82 Aligned_cols=268 Identities=19% Similarity=0.190 Sum_probs=196.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC---CeEEEEeCCCCCCchhhhhhhhh------------cC------CCCccEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNMGAVKVLQEL------------FP------QPGQLQFI 106 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~------------~~------~~~~~~~~ 106 (393)
+.++|||||||||+|++|++.|+..+ .+|+++.|.........+.-.++ .. ...++.++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 45899999999999999999999764 36899998655433222211010 00 01578999
Q ss_pred EccCC-------CHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeeccee
Q 016208 107 YADLG-------DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCAT 178 (393)
Q Consensus 107 ~~Dl~-------~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~v 178 (393)
.||+. +.+.+.+++ .++|+|||+|+...+ ..++...++.|+.++.+++++|++. +++++||+||.++
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~--~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~v 164 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMW--KEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYV 164 (491)
T ss_pred ecccCCcCCCCChHHHHHHHH--hCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEE
Confidence 99998 445567777 689999999998764 3467889999999999999999986 6889999999999
Q ss_pred ecCCCC----CCCCCCC-----------------------------------------------CCCCCChHHHHHHHHH
Q 016208 179 YGEPDK----MPITEST-----------------------------------------------PQKPINPYGKAKKMSE 207 (393)
Q Consensus 179 yg~~~~----~~~~E~~-----------------------------------------------~~~p~~~Y~~sK~~~E 207 (393)
||...+ .++++.. ...+.+.|+.||+++|
T Consensus 165 yG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE 244 (491)
T PLN02996 165 CGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGE 244 (491)
T ss_pred ecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHH
Confidence 986432 1111000 1123467999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+++..++ .+++++++||++||||.+.+..+.-+.. .....++..+..+.. ..+.| +|++.+|++|
T Consensus 245 ~lv~~~~--~~lpv~i~RP~~V~G~~~~p~~gwi~~~------~~~~~i~~~~~~g~~-~~~~g------dg~~~~D~v~ 309 (491)
T PLN02996 245 MLLGNFK--ENLPLVIIRPTMITSTYKEPFPGWIEGL------RTIDSVIVGYGKGKL-TCFLA------DPNSVLDVIP 309 (491)
T ss_pred HHHHHhc--CCCCEEEECCCEeccCCcCCCCCcccch------hhHHHHHHHhccceE-eEEec------CCCeecceec
Confidence 9998875 4899999999999999865432211110 122334444455554 45556 8999999999
Q ss_pred HHHHHHHHHHHHhcC--CCCCcceEEecCC--CcccHHHHHHHHHHHhCCCc
Q 016208 288 VTDLVDAHVLALANA--KPGKVGIYNVGTG--KGRSVKEFVEACKKATGVNI 335 (393)
Q Consensus 288 v~Dva~a~~~~l~~~--~~~~~~~yni~~~--~~~s~~el~~~i~~~~g~~~ 335 (393)
|+|+|++++.++... ....+.+||++++ .++|+.++++.+.+.++..+
T Consensus 310 Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 310 ADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred ccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 999999999988753 2222369999988 89999999999999887543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=280.37 Aligned_cols=312 Identities=16% Similarity=0.176 Sum_probs=221.2
Q ss_pred cEEEEEcCCChhHHHHHHHHH--HCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH------HHHHHHHh
Q 016208 50 THVLVTGGAGYIGSHAALRLL--KDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA------KAVNKIFA 121 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~------~~~~~~~~ 121 (393)
|+|||||||||||++|+++|+ +.|++|++++|... ........... . ..+++++.+|+.++ +.+.+ +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~-~~~~~~~~~~~-~-~~~v~~~~~Dl~~~~~~~~~~~~~~-l- 75 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQS-LSRLEALAAYW-G-ADRVVPLVGDLTEPGLGLSEADIAE-L- 75 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHhc-C-CCcEEEEecccCCccCCcCHHHHHH-h-
Confidence 589999999999999999999 58999999998432 11111111111 1 14789999999984 34444 3
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCC---CCCCCh
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTP---QKPINP 198 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~---~~p~~~ 198 (393)
.++|+|||||+..... .......++|+.++.+++++|++.+++++||+||..+||...+ +.+|+.. ..+.++
T Consensus 76 -~~~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~~ 150 (657)
T PRK07201 76 -GDIDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFDEGQGLPTP 150 (657)
T ss_pred -cCCCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccchhhcCCCCc
Confidence 6899999999976542 3456678899999999999999999999999999999986544 4555542 334678
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCC
Q 016208 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD 278 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 278 (393)
|+.+|+.+|+++.+ ..+++++++||++|||+...+....... ..++..++..+......+++.+ .
T Consensus 151 Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~ 215 (657)
T PRK07201 151 YHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDG------PYYFFKVLAKLAKLPSWLPMVG------P 215 (657)
T ss_pred hHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCc------HHHHHHHHHHhccCCccccccc------C
Confidence 99999999999875 2689999999999999875432111000 0111122222211111123333 4
Q ss_pred CccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCc---ceEEccCCC-----C-----
Q 016208 279 GTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI---KVEYLSRRP-----G----- 345 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~---~~~~~~~~~-----~----- 345 (393)
+...++++|++|+++++..+++.+.. .+++||+++++++++.|+++.+.+.+|.+. .....|.+. .
T Consensus 216 ~~~~~~~v~vddva~ai~~~~~~~~~-~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~ 294 (657)
T PRK07201 216 DGGRTNIVPVDYVADALDHLMHKDGR-DGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPV 294 (657)
T ss_pred CCCeeeeeeHHHHHHHHHHHhcCcCC-CCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchh
Confidence 55678999999999999998875433 347999999999999999999999999876 333322110 0
Q ss_pred --------------------CCcceecCHHHHHhhC-CCceeccCHHHHHHHHHHHHHhccCC
Q 016208 346 --------------------DYAEVYSDPSKIRDEL-NWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 346 --------------------~~~~~~~d~~k~~~~l-G~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
......+|++++++.| +.....+.+++.+...++||.++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 295 RRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYAPRLWDYWERHLDP 357 (657)
T ss_pred hHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChHHHHHHHHHHHHhcCCh
Confidence 0113467899999888 22233347999999999999888644
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=242.76 Aligned_cols=254 Identities=26% Similarity=0.378 Sum_probs=190.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccE----EEEccCCCHHHHHHHHhhCCCc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQ----FIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||||||+|.||+.|+++|++.+ .++++++++..........++..... .++. ++.+|++|.+.+.+++++.+||
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 7999999999999999999997 58999988544433333333222221 3443 4589999999999999777999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||+|+.-+++.++.++.++++.|+.||.|++++|.+++++++|++||. -..+|.+.||.||+.+
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTD--------------KAv~PtnvmGatKrla 145 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTD--------------KAVNPTNVMGATKRLA 145 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEEC--------------GCSS--SHHHHHHHHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc--------------ccCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999993 3456899999999999
Q ss_pred HHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 207 EDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 207 E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
|.++..++... +.+++++|+|+|.|.. |+.++.+.+.+.++.| +.+. +++..|
T Consensus 146 E~l~~~~~~~~~~~~t~f~~VRFGNVlgS~----------------GSVip~F~~Qi~~g~P-lTvT-------~p~mtR 201 (293)
T PF02719_consen 146 EKLVQAANQYSGNSDTKFSSVRFGNVLGSR----------------GSVIPLFKKQIKNGGP-LTVT-------DPDMTR 201 (293)
T ss_dssp HHHHHHHCCTSSSS--EEEEEEE-EETTGT----------------TSCHHHHHHHHHTTSS-EEEC-------ETT-EE
T ss_pred HHHHHHHhhhCCCCCcEEEEEEecceecCC----------------CcHHHHHHHHHHcCCc-ceeC-------CCCcEE
Confidence 99999988765 6899999999999964 3899999999999999 8875 588999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC------CcceEEccCCCCC
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV------NIKVEYLSRRPGD 346 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~------~~~~~~~~~~~~~ 346 (393)
-|+.++++++.++.+......+ ++|.+--|+++++.|+++.+.+..|. ++++.....++++
T Consensus 202 ffmti~EAv~Lvl~a~~~~~~g--eifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlRpGE 268 (293)
T PF02719_consen 202 FFMTIEEAVQLVLQAAALAKGG--EIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLRPGE 268 (293)
T ss_dssp EEE-HHHHHHHHHHHHHH--TT--EEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----TT-
T ss_pred EEecHHHHHHHHHHHHhhCCCC--cEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCCCCc
Confidence 9999999999999998876544 79988888999999999999999974 4555555555543
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=244.95 Aligned_cols=257 Identities=25% Similarity=0.313 Sum_probs=221.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..+|+||||||+|-||+.+++++++.+ .+++.++|+..+.......+.+..+ ..++.++.||+.|.+.+..+++..++
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~-~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP-ELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC-CcceEEEecccccHHHHHHHHhcCCC
Confidence 456999999999999999999999987 4788887766555555555555444 36889999999999999999977779
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|+|||+|+.-+++.++.+|.+.++.|+.||+|++++|.+++++++|.+|| |-..+|.|.||.+|++
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iST--------------DKAV~PtNvmGaTKr~ 392 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST--------------DKAVNPTNVMGATKRL 392 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEec--------------CcccCCchHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999 4456789999999999
Q ss_pred HHHHHHHHHhh-C--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccc
Q 016208 206 SEDIIIDFSKT-T--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282 (393)
Q Consensus 206 ~E~~~~~~~~~-~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 282 (393)
+|..+.+++.. . +.+++.+|+|||.|.+ |+.+|.+.+.+.++.| +++. +++..
T Consensus 393 aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr----------------GSViPlFk~QI~~Ggp-lTvT-------dp~mt 448 (588)
T COG1086 393 AEKLFQAANRNVSGTGTRFCVVRFGNVLGSR----------------GSVIPLFKKQIAEGGP-LTVT-------DPDMT 448 (588)
T ss_pred HHHHHHHHhhccCCCCcEEEEEEecceecCC----------------CCCHHHHHHHHHcCCC-cccc-------CCCce
Confidence 99999998774 3 4899999999999975 3899999999999988 7775 68999
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhC----CCcceEEccCCC
Q 016208 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG----VNIKVEYLSRRP 344 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g----~~~~~~~~~~~~ 344 (393)
|-|+.+.|.++.++.+......+ ++|-+--|+++++.|+++.+-+..| .++++.....++
T Consensus 449 RyfMTI~EAv~LVlqA~a~~~gG--eifvldMGepvkI~dLAk~mi~l~g~~~~~dI~I~~~GlRp 512 (588)
T COG1086 449 RFFMTIPEAVQLVLQAGAIAKGG--EIFVLDMGEPVKIIDLAKAMIELAGQTPPGDIAIKIIGLRP 512 (588)
T ss_pred eEEEEHHHHHHHHHHHHhhcCCC--cEEEEcCCCCeEHHHHHHHHHHHhCCCCCCCCCeEEEecCC
Confidence 99999999999999988875544 7998888899999999999999997 344454443333
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=247.74 Aligned_cols=251 Identities=19% Similarity=0.179 Sum_probs=193.3
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
......+|+|+|||||||||++++++|+++|++|++++|.......... ..+......+++++.+|+.|++++.++++.
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~-~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNG-KEDTKKELPGAEVVFGDVTDADSLRKVLFS 132 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccch-hhHHhhhcCCceEEEeeCCCHHHHHHHHHH
Confidence 3445677899999999999999999999999999999986533211000 000001124789999999999999999854
Q ss_pred C--CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 123 N--AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 123 ~--~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
. ++|+||||++.... .....+++|..++.+++++|++.++++||++||.++++ |...|.
T Consensus 133 ~~~~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~--------------p~~~~~ 193 (390)
T PLN02657 133 EGDPVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK--------------PLLEFQ 193 (390)
T ss_pred hCCCCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC--------------cchHHH
Confidence 3 69999999875321 12345788999999999999999999999999987752 345789
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|...|+.+.. ...+++++++||+.+||+- . ..+..+..+.+ +.+.| +|+
T Consensus 194 ~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-------------------~-~~~~~~~~g~~-~~~~G------dG~ 244 (390)
T PLN02657 194 RAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-------------------G-GQVEIVKDGGP-YVMFG------DGK 244 (390)
T ss_pred HHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-------------------H-HHHHhhccCCc-eEEec------CCc
Confidence 999999999876 3478999999999999742 1 12455556666 66666 777
Q ss_pred ccc-ccccHHHHHHHHHHHHhcCCCCCcceEEecCC-CcccHHHHHHHHHHHhCCCcceEEccCC
Q 016208 281 CVR-DYIDVTDLVDAHVLALANAKPGKVGIYNVGTG-KGRSVKEFVEACKKATGVNIKVEYLSRR 343 (393)
Q Consensus 281 ~~~-~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~~~~~ 343 (393)
..+ ++||++|+|++++.++..+... +++||++++ +.+|++|+++.+.+.+|++..+...|.+
T Consensus 245 ~~~~~~I~v~DlA~~i~~~~~~~~~~-~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~ 308 (390)
T PLN02657 245 LCACKPISEADLASFIADCVLDESKI-NKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQ 308 (390)
T ss_pred ccccCceeHHHHHHHHHHHHhCcccc-CCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHH
Confidence 655 5799999999999998765432 379999875 6899999999999999998777666543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=226.86 Aligned_cols=282 Identities=22% Similarity=0.238 Sum_probs=211.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
|+|||||||||++|+.+|.+.||+|++++|..+.... +.... +...+.+.+..+ .++|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~-------------~~~~~---v~~~~~~~~~~~-~~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQ-------------NLHPN---VTLWEGLADALT-LGIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhh-------------hcCcc---ccccchhhhccc-CCCCEEEEC
Confidence 6899999999999999999999999999997765542 11111 112233444442 279999999
Q ss_pred ccccCcc--CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 132 AAVAYVG--ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 132 A~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
||..-.. ..........+.-++.|+.|.++..+. +.+.+|..|..+.||......++|+++ .....-+.....-|
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~-~g~~Fla~lc~~WE 142 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESP-PGDDFLAQLCQDWE 142 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCC-CCCChHHHHHHHHH
Confidence 9966433 344556778889999999999998844 577899999999999999999999943 45667777777778
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+..... +..|.+++++|.|.|.|+.- .++..+....+-+ .-..+++|.|+++|||
T Consensus 143 ~~a~~a-~~~gtRvvllRtGvVLs~~G----------------GaL~~m~~~fk~g--------lGG~~GsGrQ~~SWIh 197 (297)
T COG1090 143 EEALQA-QQLGTRVVLLRTGVVLSPDG----------------GALGKMLPLFKLG--------LGGKLGSGRQWFSWIH 197 (297)
T ss_pred HHHhhh-hhcCceEEEEEEEEEecCCC----------------cchhhhcchhhhc--------cCCccCCCCceeeeee
Confidence 777774 44799999999999999752 4454443333322 2234569999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc----CCCCCCcceec-----CHHHHH
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS----RRPGDYAEVYS-----DPSKIR 358 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~-----d~~k~~ 358 (393)
++|+++++.+++++.... +.||++++.+++..+|..++.+.++++....... ...++.....+ -+.|+.
T Consensus 198 ieD~v~~I~fll~~~~ls--Gp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~ 275 (297)
T COG1090 198 IEDLVNAILFLLENEQLS--GPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLE 275 (297)
T ss_pred HHHHHHHHHHHHhCcCCC--CcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHH
Confidence 999999999999987765 5999999999999999999999999775543211 01122222222 355664
Q ss_pred hhCCCceeccCHHHHHHHHHH
Q 016208 359 DELNWTARFTDLQGSLQIAWR 379 (393)
Q Consensus 359 ~~lG~~p~~~~~~e~l~~~~~ 379 (393)
..||+.+++++++++.+++.
T Consensus 276 -~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 276 -AAGFQFQYPDLEEALADILK 295 (297)
T ss_pred -HCCCeeecCCHHHHHHHHHh
Confidence 57999999999999998764
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=258.67 Aligned_cols=265 Identities=16% Similarity=0.097 Sum_probs=197.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+||||||||+||||++|++.|.++|++|... .+|++|.+.+...+...++|
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd 430 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPT 430 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCC
Confidence 355799999999999999999999999988421 03677888888888777999
Q ss_pred EEEEcccccC---ccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC------CCCCCCCCCCCCC-C
Q 016208 127 AVMHFAAVAY---VGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP------DKMPITESTPQKP-I 196 (393)
Q Consensus 127 ~Vi~~A~~~~---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~------~~~~~~E~~~~~p-~ 196 (393)
+|||||+... .+.+..++...+++|+.++.+|+++|++.++ ++|++||.++|+.. ...+++|++++.| .
T Consensus 431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~ 509 (668)
T PLN02260 431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTG 509 (668)
T ss_pred EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCCC
Confidence 9999999874 3345668899999999999999999999998 57888999998742 1347888876665 5
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
++||.+|+++|+++..++ ++.++|+..+||.+..+. +.|+..+++. ..+ +.+ +
T Consensus 510 ~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~~------------~nfv~~~~~~---~~~-~~v-p----- 562 (668)
T PLN02260 510 SFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSNP------------RNFITKISRY---NKV-VNI-P----- 562 (668)
T ss_pred ChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCCc------------cHHHHHHhcc---cee-ecc-C-----
Confidence 999999999999998864 467888888887532110 0455444432 111 222 1
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCc--c-e--EEcc--CCCCCCcc
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI--K-V--EYLS--RRPGDYAE 349 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~--~-~--~~~~--~~~~~~~~ 349 (393)
.+..+++|++.+++.+++... +++||+++++.+|+.|+++.|++.++... . + ...+ ....++..
T Consensus 563 ------~~~~~~~~~~~~~~~l~~~~~---~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~ 633 (668)
T PLN02260 563 ------NSMTVLDELLPISIEMAKRNL---RGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN 633 (668)
T ss_pred ------CCceehhhHHHHHHHHHHhCC---CceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc
Confidence 236778899999888887422 26999999999999999999999874221 1 1 1111 11223344
Q ss_pred eecCHHHHHhhCCCceeccCHHHHHHHHHH
Q 016208 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWR 379 (393)
Q Consensus 350 ~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~ 379 (393)
.+|++|+++.+|. ++ +|+|+|.+++.
T Consensus 634 -~l~~~k~~~~~~~-~~--~~~~~l~~~~~ 659 (668)
T PLN02260 634 -EMDASKLKKEFPE-LL--SIKESLIKYVF 659 (668)
T ss_pred -cccHHHHHHhCcc-cc--chHHHHHHHHh
Confidence 8999999988898 65 79999998764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=239.49 Aligned_cols=260 Identities=19% Similarity=0.238 Sum_probs=188.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCch---hhhhhhhhcC---C-C-CccEEEEccCCCH------H
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMG---AVKVLQELFP---Q-P-GQLQFIYADLGDA------K 114 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~---~~~~~~~~~~---~-~-~~~~~~~~Dl~~~------~ 114 (393)
+|||||||||||++|+++|+++| ++|+++.|....... ..+.+..... . . .++.++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999999 679999886442211 1111111100 0 0 4789999998754 4
Q ss_pred HHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-
Q 016208 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ- 193 (393)
Q Consensus 115 ~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~- 193 (393)
.+..+. .++|+|||+|+.... ........+.|+.++.+++++|.+.+++++||+||.++|+.....+..|+.+.
T Consensus 81 ~~~~~~--~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~ 155 (367)
T TIGR01746 81 EWERLA--ENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIV 155 (367)
T ss_pred HHHHHH--hhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccc
Confidence 566666 689999999997653 23456677899999999999999998888999999999986543333444332
Q ss_pred ----CCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 194 ----KPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 194 ----~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+.+.|+.+|+.+|.+++.+.. .|++++++||+.+||+...+.+... .++..++........ +
T Consensus 156 ~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~---------~~~~~~~~~~~~~~~-~-- 222 (367)
T TIGR01746 156 TPPPGLAGGYAQSKWVAELLVREASD-RGLPVTIVRPGRILGNSYTGAINSS---------DILWRMVKGCLALGA-Y-- 222 (367)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHh-cCCCEEEECCCceeecCCCCCCCch---------hHHHHHHHHHHHhCC-C--
Confidence 2356899999999999988765 4999999999999998544332111 233333333222111 1
Q ss_pred cCccccCCCCc-cccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHHHhCCCcc
Q 016208 270 RGTDYNTADGT-CVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVNIK 336 (393)
Q Consensus 270 ~g~~~~~~~g~-~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~ 336 (393)
+ ... ...+++|++|++++++.++..+.. ..+++||+++++++++.|+++.+.+ .|.+.+
T Consensus 223 -p------~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 223 -P------DSPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred -C------CCCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 1 222 357899999999999998876543 1147999999999999999999998 887655
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=232.15 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=190.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC---eEEEEeCCCCCCchhhhhhhhhc------------C------CCCccEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNMGAVKVLQELF------------P------QPGQLQFI 106 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~------------~------~~~~~~~~ 106 (393)
..++|||||||||||.+|+++|++.+. +|+++.|.........+..+++. . ...++.++
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 558999999999999999999998754 67999885443322222111111 1 02578999
Q ss_pred EccCCCH------HHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceee
Q 016208 107 YADLGDA------KAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATY 179 (393)
Q Consensus 107 ~~Dl~~~------~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vy 179 (393)
.||+.++ +....+. .++|+|||+|+...+ ..++...+++|+.++.+++++|++. +++++||+||+++|
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~--~~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVy 272 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIA--KEVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVN 272 (605)
T ss_pred EeeCCCcccCCCHHHHHHHH--hcCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceee
Confidence 9999987 3445555 579999999998754 3567889999999999999999887 47899999999999
Q ss_pred cCCCCCCCCCCCC-----------------------------------------------------------CCCCChHH
Q 016208 180 GEPDKMPITESTP-----------------------------------------------------------QKPINPYG 200 (393)
Q Consensus 180 g~~~~~~~~E~~~-----------------------------------------------------------~~p~~~Y~ 200 (393)
|...+ .+.|... ..-.+.|.
T Consensus 273 G~~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt 351 (605)
T PLN02503 273 GQRQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYV 351 (605)
T ss_pred cCCCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHH
Confidence 87642 2222211 01137899
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|.++|+++.++. .+++++|+||+.|.+...++..|..+... ...+.++... .+.- -...+ +++
T Consensus 352 ~TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~-----~~~p~~~~~g-~G~l-r~~~~------~~~ 416 (605)
T PLN02503 352 FTKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNR-----MMDPIVLYYG-KGQL-TGFLA------DPN 416 (605)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCcc-----ccchhhhhee-ccce-eEEEe------CCC
Confidence 99999999999754 58999999999997766655555443311 1222222222 2321 11334 789
Q ss_pred cccccccHHHHHHHHHHHHhc-CC--CCCcceEEecCC--CcccHHHHHHHHHHHhCC
Q 016208 281 CVRDYIDVTDLVDAHVLALAN-AK--PGKVGIYNVGTG--KGRSVKEFVEACKKATGV 333 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~-~~--~~~~~~yni~~~--~~~s~~el~~~i~~~~g~ 333 (393)
...|+|+||.++.+++.++.. .. ...+.+||++++ +++++.++.+.+.+.+..
T Consensus 417 ~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 417 GVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred eeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 999999999999999988542 11 113479999988 899999999999987754
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=231.70 Aligned_cols=238 Identities=17% Similarity=0.267 Sum_probs=172.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
||||||||+||||++|+++|+++|++|++++|...... ..+++++.+|+.++. +.+++ .++|+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~------------~~~ve~v~~Dl~d~~-l~~al--~~~D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL------------DPRVDYVCASLRNPV-LQELA--GEADAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc------------cCCceEEEccCCCHH-HHHHh--cCCCEEE
Confidence 58999999999999999999999999999987532110 247889999999985 77777 6899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+.... .....|+.++.+++++|++.++ ++||+||. +|... .|. .+|.+
T Consensus 66 HLAa~~~~--------~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~~--------------~~~----~aE~l 116 (699)
T PRK12320 66 HLAPVDTS--------APGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRPE--------------LYR----QAETL 116 (699)
T ss_pred EcCccCcc--------chhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCCc--------------ccc----HHHHH
Confidence 99986321 1125899999999999999998 79999985 33210 121 36766
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+.. ++++++++|++++|||+..... +.++..++.....+++ ..++|++
T Consensus 117 l~~----~~~p~~ILR~~nVYGp~~~~~~-----------~r~I~~~l~~~~~~~p-----------------I~vIyVd 164 (699)
T PRK12320 117 VST----GWAPSLVIRIAPPVGRQLDWMV-----------CRTVATLLRSKVSARP-----------------IRVLHLD 164 (699)
T ss_pred HHh----cCCCEEEEeCceecCCCCcccH-----------hHHHHHHHHHHHcCCc-----------------eEEEEHH
Confidence 554 5689999999999998643110 1344444443333333 3358999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceeccC
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTD 369 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 369 (393)
|++++++.+++.+. .++|||++++.+|+.|+++.+..... ...+. ..........|....+..++|.|+. +
T Consensus 165 Dvv~alv~al~~~~---~GiyNIG~~~~~Si~el~~~i~~~~p-~~~~~----~~~~~~~~~pdi~~a~~~~~w~~~~-~ 235 (699)
T PRK12320 165 DLVRFLVLALNTDR---NGVVDLATPDTTNVVTAWRLLRSVDP-HLRTR----RVRSWEQLIPEVDIAAVQEDWNFEF-G 235 (699)
T ss_pred HHHHHHHHHHhCCC---CCEEEEeCCCeeEHHHHHHHHHHhCC-Ccccc----ccccHHHhCCCCchhhhhcCCCCcc-h
Confidence 99999999988643 24999999999999999999876521 11111 2233344566777777788999988 6
Q ss_pred HHH
Q 016208 370 LQG 372 (393)
Q Consensus 370 ~~e 372 (393)
|+.
T Consensus 236 ~~~ 238 (699)
T PRK12320 236 WQA 238 (699)
T ss_pred HHH
Confidence 654
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=195.91 Aligned_cols=307 Identities=23% Similarity=0.280 Sum_probs=235.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCC-----CccEEEEccCCCHHHHHHHHhh
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQP-----GQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
..+..||||-||+-|++|++.|+.+||+|.++-|.+.... ...++.+...+ ....+..||++|...+..++..
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFN--T~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ 104 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFN--TARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLIST 104 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccc--hhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhc
Confidence 4468899999999999999999999999999887554332 12233333332 4577899999999999999988
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC---cEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV---KTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
.+|+-|+|+|+..+...+..-++-..++...|+.+|+++.+..+. -||-..||.-.||.-...|-.|.+|..|.+||
T Consensus 105 ikPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRSPY 184 (376)
T KOG1372|consen 105 IKPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRSPY 184 (376)
T ss_pred cCchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCChh
Confidence 899999999999887766667777778889999999999987742 27889999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchH-HHHHHHhC---CCCceeEcCcccc
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISG-ACFDAARG---IIPGLKIRGTDYN 275 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~g~~~~ 275 (393)
+.+|..+-.++..|.+.+++-.+.--+.+--.|+.. + .|+. .+.+.+.+ ++. +.+.
T Consensus 185 a~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRG----e----------nFVTRKItRsvakI~~gqq------e~~~ 244 (376)
T KOG1372|consen 185 AAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRG----E----------NFVTRKITRSVAKISLGQQ------EKIE 244 (376)
T ss_pred HHhhhhheEEEEEhHHhhcceeeccEeecCCCCccc----c----------chhhHHHHHHHHHhhhcce------eeEE
Confidence 999999988888888777765554333443333322 1 3333 33333322 221 1122
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEE----------------
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY---------------- 339 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~---------------- 339 (393)
++.-...|||-|..|-++|++.+++.+.+. -|-|..++..|++||++.....+|....+.-
T Consensus 245 LGNL~a~RDWGhA~dYVEAMW~mLQ~d~Pd---DfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V 321 (376)
T KOG1372|consen 245 LGNLSALRDWGHAGDYVEAMWLMLQQDSPD---DFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRV 321 (376)
T ss_pred ecchhhhcccchhHHHHHHHHHHHhcCCCC---ceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEE
Confidence 336778999999999999999999988775 7889999999999999998888885443321
Q ss_pred -cc---CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHH
Q 016208 340 -LS---RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380 (393)
Q Consensus 340 -~~---~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~ 380 (393)
+. .++.+...+.-|.+|+++.|||+|+. ++++-+++|+..
T Consensus 322 ~v~~kYyRPtEVd~LqGdasKAk~~LgW~pkv-~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 322 KVDPKYYRPTEVDTLQGDASKAKKTLGWKPKV-TFPELVKEMVAS 365 (376)
T ss_pred EecccccCcchhhhhcCChHHHHHhhCCCCcc-CHHHHHHHHHHh
Confidence 11 23444456667999999999999999 899999998864
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=213.51 Aligned_cols=220 Identities=20% Similarity=0.214 Sum_probs=133.0
Q ss_pred EEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcC----------CCCccEEEEccCCCH------HH
Q 016208 54 VTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFP----------QPGQLQFIYADLGDA------KA 115 (393)
Q Consensus 54 ItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~------~~ 115 (393)
|||||||+|++|+++|++.+. +|+++.|.........+....+.. ...+++++.||++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999986 899999955332222222111110 136999999999975 45
Q ss_pred HHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCC------
Q 016208 116 VNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITE------ 189 (393)
Q Consensus 116 ~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E------ 189 (393)
+.++. ..+|+|||||+..++. .+.....+.|+.++.++++.|.+.+.++|+|+||..+.+...+ ...|
T Consensus 81 ~~~L~--~~v~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~-~~~~~~~~~~ 154 (249)
T PF07993_consen 81 YQELA--EEVDVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPG-TIEEKVYPEE 154 (249)
T ss_dssp HHHHH--HH--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TT-T--SSS-HHH
T ss_pred hhccc--cccceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCC-cccccccccc
Confidence 66665 6899999999988664 3455578899999999999999777679999999555554433 2211
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCccccccc-chHHHHHHHhCCC
Q 016208 190 ----STPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGR-ISGACFDAARGII 264 (393)
Q Consensus 190 ----~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 264 (393)
+......+.|..||+.+|+++++++++.|++++|+||+.|+|....+.+... . +...+......+.
T Consensus 155 ~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~---------~~~~~~~~~~~~~~~ 225 (249)
T PF07993_consen 155 EDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSD---------DFFPYLLRSCIALGA 225 (249)
T ss_dssp --EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TT---------BHHHHHHHHHHHH-E
T ss_pred cccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeecc---------chHHHHHHHHHHcCC
Confidence 1233446799999999999999998877999999999999996655543322 3 3334444444333
Q ss_pred CceeEcCccccCCCCccccccccHHHHHHHH
Q 016208 265 PGLKIRGTDYNTADGTCVRDYIDVTDLVDAH 295 (393)
Q Consensus 265 ~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~ 295 (393)
. ....+ .+....++++||.+|++|
T Consensus 226 ~-p~~~~------~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 226 F-PDLPG------DPDARLDLVPVDYVARAI 249 (249)
T ss_dssp E-ES-SB---------TT--EEEHHHHHHHH
T ss_pred c-ccccC------CCCceEeEECHHHHHhhC
Confidence 1 11222 455679999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=211.82 Aligned_cols=218 Identities=16% Similarity=0.133 Sum_probs=160.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CC-C
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NA-F 125 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~-~ 125 (393)
+|+||||||++|++++++|+++|++|++++|...... ..+++.+.+|+.|++++..+++. .+ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~------------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA------------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc------------CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 4899999999999999999999999999999654321 14677788999999999998842 35 9
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|.|+|+++... + ......+++++|++.|+++||++||..++... + .+..
T Consensus 69 d~v~~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~------------~------~~~~ 117 (285)
T TIGR03649 69 SAVYLVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKGG------------P------AMGQ 117 (285)
T ss_pred eEEEEeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCCC------------c------hHHH
Confidence 99999986421 1 12345689999999999999999986553210 0 1233
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
.|++++. ..|+++++|||+.+|++... ......+..... +. .+ .++..++|
T Consensus 118 ~~~~l~~---~~gi~~tilRp~~f~~~~~~------------------~~~~~~~~~~~~-~~-~~------~g~~~~~~ 168 (285)
T TIGR03649 118 VHAHLDS---LGGVEYTVLRPTWFMENFSE------------------EFHVEAIRKENK-IY-SA------TGDGKIPF 168 (285)
T ss_pred HHHHHHh---ccCCCEEEEeccHHhhhhcc------------------cccccccccCCe-EE-ec------CCCCccCc
Confidence 4554443 14999999999998864210 001111222121 21 22 57788999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
||++|+|++++.++..+... ++.|++++++.+|+.|+++.+.+.+|++++....+
T Consensus 169 v~~~Dva~~~~~~l~~~~~~-~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~ 223 (285)
T TIGR03649 169 VSADDIARVAYRALTDKVAP-NTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLT 223 (285)
T ss_pred ccHHHHHHHHHHHhcCCCcC-CCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCC
Confidence 99999999999999875443 36999999999999999999999999988766544
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=237.76 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=188.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC----CeEEEEeCCCCCCchhhhhhhhhc--------CCCCccEEEEccCCC---
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS----YRVTIVDNLSRGNMGAVKVLQELF--------PQPGQLQFIYADLGD--- 112 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~~--- 112 (393)
..++|+|||||||+|++|++.|++++ ++|+++.|........ +.+.... ....++.++.+|+.+
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 34799999999999999999999887 7999998854332221 2221100 001378899999974
Q ss_pred ---HHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC------
Q 016208 113 ---AKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD------ 183 (393)
Q Consensus 113 ---~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~------ 183 (393)
.+.+.++. .++|+|||+|+..... .........|+.++.++++.|.+.++++++|+||.++|+...
T Consensus 1049 gl~~~~~~~l~--~~~d~iiH~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~ 1123 (1389)
T TIGR03443 1049 GLSDEKWSDLT--NEVDVIIHNGALVHWV---YPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSD 1123 (1389)
T ss_pred CcCHHHHHHHH--hcCCEEEECCcEecCc---cCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhh
Confidence 45566666 6899999999976532 234445568999999999999998889999999999996421
Q ss_pred ------CCCCCCCCC-----CCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccc
Q 016208 184 ------KMPITESTP-----QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRI 252 (393)
Q Consensus 184 ------~~~~~E~~~-----~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 252 (393)
...+.|+.+ ..+.+.|+.+|+.+|.++..+++ .|++++++||+.|||+...+.+... .+
T Consensus 1124 ~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~---------~~ 1193 (1389)
T TIGR03443 1124 ELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTD---------DF 1193 (1389)
T ss_pred hhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCch---------hH
Confidence 112444432 22456799999999999998766 5999999999999999765432111 34
Q ss_pred hHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHHHh
Q 016208 253 SGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKAT 331 (393)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~~~ 331 (393)
+..++....... ..+ +....++|++++|++++++.++..+.. ..+.+||++++..+++.++++.+.+.
T Consensus 1194 ~~~~~~~~~~~~----~~p------~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~- 1262 (1389)
T TIGR03443 1194 LLRMLKGCIQLG----LIP------NINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY- 1262 (1389)
T ss_pred HHHHHHHHHHhC----CcC------CCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-
Confidence 444443332211 111 445578999999999999998875532 22358999998899999999999764
Q ss_pred CCCcc
Q 016208 332 GVNIK 336 (393)
Q Consensus 332 g~~~~ 336 (393)
|.+.+
T Consensus 1263 g~~~~ 1267 (1389)
T TIGR03443 1263 GYDVE 1267 (1389)
T ss_pred CCCCC
Confidence 55544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=193.01 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=171.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++||||||+|+||++++++|+++|++|+++.|.... .+.+.... ..++.++.+|++|.+++.+++++ .+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~----~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDA----LDDLKARY--GDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhc--cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999998874321 12222111 24688999999999998877653 46
Q ss_pred CcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||+||....... .......+++|+.++.++++++ ++.+.+++|++||...... ..+.
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~~~ 145 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIA-----------YPGF 145 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccC-----------CCCC
Confidence 8999999997654322 2234567889999999999997 5556779999999654321 2246
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccc---cCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNV---IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
+.|+.+|+..|.+++.++.+ .|++++++||+.+ ||++.... .... .........+.+.+..+..
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~----- 215 (276)
T PRK06482 146 SLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRG--APLD---AYDDTPVGDLRRALADGSF----- 215 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCccccccc--CCCc---cccchhhHHHHHHHhhccC-----
Confidence 79999999999999988765 6999999999988 65532210 0000 0000112223333322211
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG 332 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g 332 (393)
.-+.+++|++++++.++..+... ..||+++++..++.++++.+.+.++
T Consensus 216 ------------~~~~d~~~~~~a~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 216 ------------AIPGDPQKMVQAMIASADQTPAP--RRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred ------------CCCCCHHHHHHHHHHHHcCCCCC--eEEecChHHHHHHHHHHHHHHHHHH
Confidence 11457899999999998865443 5899999988899888888777665
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=185.68 Aligned_cols=235 Identities=18% Similarity=0.178 Sum_probs=193.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+-.+-|+|||||+|++++++|.+.|.+|++-.|-+.......+.+.++ +++-++..|+.|++++++++ ....
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdL----GQvl~~~fd~~DedSIr~vv--k~sN 132 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDL----GQVLFMKFDLRDEDSIRAVV--KHSN 132 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccc----cceeeeccCCCCHHHHHHHH--HhCc
Confidence 34457889999999999999999999999999888665555444444444 78999999999999999999 6789
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||+.|-- .+.......++|+.+.+.+...|++.|+.|||++|+...- ....+-|-.+|.++
T Consensus 133 VVINLIGrd----~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan-------------v~s~Sr~LrsK~~g 195 (391)
T KOG2865|consen 133 VVINLIGRD----YETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN-------------VKSPSRMLRSKAAG 195 (391)
T ss_pred EEEEeeccc----cccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc-------------ccChHHHHHhhhhh
Confidence 999999853 2444566778999999999999999999999999985521 23357799999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC-cccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG-TCVRDY 285 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~ 285 (393)
|..+++. -...+|+||+.|||..+ +++.......++-.. +++++ .| +..-..
T Consensus 196 E~aVrda----fPeAtIirPa~iyG~eD----------------rfln~ya~~~rk~~~-~pL~~------~GekT~K~P 248 (391)
T KOG2865|consen 196 EEAVRDA----FPEATIIRPADIYGTED----------------RFLNYYASFWRKFGF-LPLIG------KGEKTVKQP 248 (391)
T ss_pred HHHHHhh----CCcceeechhhhcccch----------------hHHHHHHHHHHhcCc-eeeec------CCcceeecc
Confidence 9999983 45789999999999864 677777777776555 88887 44 456678
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhC
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG 332 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g 332 (393)
|+|-|+|++|+.++.+++. .|.+|..+++..+++.|+++.+-+...
T Consensus 249 VyV~DVaa~IvnAvkDp~s-~Gktye~vGP~~yql~eLvd~my~~~~ 294 (391)
T KOG2865|consen 249 VYVVDVAAAIVNAVKDPDS-MGKTYEFVGPDRYQLSELVDIMYDMAR 294 (391)
T ss_pred EEEehHHHHHHHhccCccc-cCceeeecCCchhhHHHHHHHHHHHHh
Confidence 9999999999999998855 458999999999999999999877654
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=191.39 Aligned_cols=253 Identities=19% Similarity=0.218 Sum_probs=174.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhc--------CCCCccEEEEccCCCH------H
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELF--------PQPGQLQFIYADLGDA------K 114 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~~~------~ 114 (393)
++||+||||||+|.+|+.+|+.+- .+|+++.|....+. ..+.++... ....+++++-||+..+ .
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~-a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEA-ALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHH-HHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 489999999999999999999875 49999999554333 333332221 2246899999999844 5
Q ss_pred HHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCC----CCCCC
Q 016208 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKM----PITES 190 (393)
Q Consensus 115 ~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~----~~~E~ 190 (393)
.+..+. ..+|.|||+|+..++ ..+.......|+.||..+++.|...+.|.+.|+||.+|+...... ..+|.
T Consensus 80 ~~~~La--~~vD~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~ 154 (382)
T COG3320 80 TWQELA--ENVDLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEI 154 (382)
T ss_pred HHHHHh--hhcceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccc
Confidence 677776 789999999998764 356677888999999999999998888889999999998654321 22222
Q ss_pred CC-----CCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 191 TP-----QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 191 ~~-----~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
++ ..+.++|+.||+.+|..+++.... |++++|+|||+|.|+...|.+... .++..++..+.+-..
T Consensus 155 ~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~---------D~~~Rlv~~~~~lg~ 224 (382)
T COG3320 155 SPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTR---------DFLTRLVLGLLQLGI 224 (382)
T ss_pred cccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccc---------hHHHHHHHHHHHhCC
Confidence 22 335789999999999999998775 999999999999999876655433 333333333332211
Q ss_pred ceeEcCccccCCCCccccccccHHHHHH-----------HHHHHHhcCCCCCcceEE-ecCCCcccHHHHHHHHHH
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVD-----------AHVLALANAKPGKVGIYN-VGTGKGRSVKEFVEACKK 329 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~-----------a~~~~l~~~~~~~~~~yn-i~~~~~~s~~el~~~i~~ 329 (393)
+| +.....+.+.++.+++ ++..+... ....+..|+ ..-+..+.+.++.+.+.+
T Consensus 225 -~P---------~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~-~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 225 -AP---------DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAH-SDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred -CC---------CcccchhhCccceeeEEeehhhhhHHHHHHHhccC-ccchhhheecccCCCccchhHHHHhHhh
Confidence 11 2333444444443333 32222222 122234554 223678999999998887
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=191.21 Aligned_cols=231 Identities=19% Similarity=0.203 Sum_probs=161.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC-HHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD-AKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 125 (393)
.+||+|+||||||+||++|+++|+++|++|+++.|...... ..+ ....++.++.+|+.+ .+.+.+.+. .++
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---~~~----~~~~~~~~~~~Dl~d~~~~l~~~~~-~~~ 86 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK---TSL----PQDPSLQIVRADVTEGSDKLVEAIG-DDS 86 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH---Hhc----ccCCceEEEEeeCCCCHHHHHHHhh-cCC
Confidence 45689999999999999999999999999999887543211 111 112468899999998 466666652 379
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC-CCCCCChHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST-PQKPINPYGKAKK 204 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~ 204 (393)
|+|||+++.... .++...++.|..++.++++++++.+++++|++||.++||...+.+..+.. ..++...|..+|.
T Consensus 87 d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~ 162 (251)
T PLN00141 87 DAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKL 162 (251)
T ss_pred CEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHH
Confidence 999999886421 12223457888999999999999999999999999999854332222211 1122334556788
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.+|++++. .++++++|||+.++++...+ . +.+.. .......
T Consensus 163 ~~e~~l~~----~gi~~~iirpg~~~~~~~~~--------------~---------------~~~~~------~~~~~~~ 203 (251)
T PLN00141 163 QAEKYIRK----SGINYTIVRPGGLTNDPPTG--------------N---------------IVMEP------EDTLYEG 203 (251)
T ss_pred HHHHHHHh----cCCcEEEEECCCccCCCCCc--------------e---------------EEECC------CCccccC
Confidence 88887765 68999999999999864211 0 11100 1111234
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecC---CCcccHHHHHHHHHH
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGT---GKGRSVKEFVEACKK 329 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~---~~~~s~~el~~~i~~ 329 (393)
+|+.+|+|++++.++..+.... .++.+.+ ....++.+++..+++
T Consensus 204 ~i~~~dvA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 204 SISRDQVAEVAVEALLCPESSY-KVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cccHHHHHHHHHHHhcChhhcC-cEEEEecCCCCCchhHHHHHHHhhc
Confidence 7999999999999998765432 5777765 234788888887764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=189.60 Aligned_cols=237 Identities=17% Similarity=0.117 Sum_probs=163.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.++++|||||+|+||.+++++|+++|++|++++|.........+.+.. ....+.++.+|+.+.+++.++++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK---AGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh---cCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999998865433333333322 234678899999999999887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHH----HHHHHHHH-HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSN----TLVILEAM-AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~-~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ........+++|+.+ +.++++.+ +..+.+++|++||...+..
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~----------- 150 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEA----------- 150 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCC-----------
Confidence 35999999999764432 123345567799998 67777777 6667889999999654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+++.++.+ .+++++++||+.++++.....+..... . .+.........+.
T Consensus 151 ~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~-------- 218 (262)
T PRK13394 151 SPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAK-E---LGISEEEVVKKVM-------- 218 (262)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhh-c---cCCChHHHHHHHH--------
Confidence 123578999999999999888776 589999999999999742210000000 0 0000001111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~ 316 (393)
+ .+...++|++++|++++++.++..... ..++.|++.++.
T Consensus 219 -~------~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 219 -L------GKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGW 259 (262)
T ss_pred -h------cCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCce
Confidence 1 234457899999999999999875432 235789887664
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=186.15 Aligned_cols=229 Identities=21% Similarity=0.206 Sum_probs=159.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++||||||+|+||++++++|+++|++|++++|..... ......+.... ...+.++.+|+++.+++..+++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR--PGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999998753321 11111121111 13578899999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ........+++|+.++.++++++... ....++.+++. .+..+..
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 151 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDI-----------HAERPLK 151 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeCh-----------hhcCCCC
Confidence 36899999999654321 12335668889999999999998642 12355555542 2234566
Q ss_pred CCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
|...|+.+|...|.+++.++.+. +++++++||+.++||.... .+..........+.+ +..
T Consensus 152 ~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~--- 213 (249)
T PRK09135 152 GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGN--------------SFDEEARQAILARTP-LKR--- 213 (249)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccc--------------cCCHHHHHHHHhcCC-cCC---
Confidence 78899999999999999988763 6999999999999996431 122222222323222 111
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCccc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s 319 (393)
+.+++|+++++..++.......+++||+++++.++
T Consensus 214 ------------~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 214 ------------IGTPEDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred ------------CcCHHHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 23589999999766654333345799999887654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=186.01 Aligned_cols=228 Identities=17% Similarity=0.063 Sum_probs=163.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.||+||||||||+||++|+++|+++|++|+++.|....... ...........++.++.+|+.+++++.+++++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAE--ELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHH--HHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999887664432211 11111111235688999999999999887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ........++.|+.++.++++.+ ++.+.+++|++||...+...
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~----------- 150 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW----------- 150 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC-----------
Confidence 37899999999654332 22334567889999999988887 45677899999998776332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+++.++.+ .+++++++||+.++|+.... ......... .+..
T Consensus 151 ~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~--------------~~~~~~~~~----~~~~--- 209 (249)
T PRK12825 151 PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEA--------------TIEEAREAK----DAET--- 209 (249)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccc--------------ccchhHHhh----hccC---
Confidence 23578999999999999887765 68999999999999985321 111111111 1001
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
....+++.+|+++++..+++... ...+++|+++++..+
T Consensus 210 ----------~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 210 ----------PLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred ----------CCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 12238999999999999987542 234689999887543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=178.61 Aligned_cols=183 Identities=25% Similarity=0.340 Sum_probs=143.5
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
|+|+||||++|++|+++|+++|++|+++.|...+... ..+++++.+|+.|++++.+++ .++|+|||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----------~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----------SPGVEIIQGDLFDPDSVKAAL--KGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----------CTTEEEEESCTTCHHHHHHHH--TTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----------ccccccceeeehhhhhhhhhh--hhcchhhhh
Confidence 7999999999999999999999999999986442221 369999999999999999999 799999999
Q ss_pred ccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016208 132 AAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIII 211 (393)
Q Consensus 132 A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~ 211 (393)
++.... ....+.+++++|++.+++++|++||.++|+........+..+ ....|...|..+|+.+.
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~ 132 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKP--IFPEYARDKREAEEALR 132 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCG--GGHHHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccccceeeeccccCCCCCccccccccc--chhhhHHHHHHHHHHHH
Confidence 975321 177889999999999999999999999997554321111111 12678999999998886
Q ss_pred HHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHH
Q 016208 212 DFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291 (393)
Q Consensus 212 ~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dv 291 (393)
. .+++++++||+.+||+.... ..+.. ..+....++|+.+|+
T Consensus 133 ~----~~~~~~ivrp~~~~~~~~~~------------------------------~~~~~-----~~~~~~~~~i~~~Dv 173 (183)
T PF13460_consen 133 E----SGLNWTIVRPGWIYGNPSRS------------------------------YRLIK-----EGGPQGVNFISREDV 173 (183)
T ss_dssp H----STSEEEEEEESEEEBTTSSS------------------------------EEEES-----STSTTSHCEEEHHHH
T ss_pred h----cCCCEEEEECcEeEeCCCcc------------------------------eeEEe-----ccCCCCcCcCCHHHH
Confidence 4 69999999999999985220 11100 023445689999999
Q ss_pred HHHHHHHHhc
Q 016208 292 VDAHVLALAN 301 (393)
Q Consensus 292 a~a~~~~l~~ 301 (393)
|++++.++++
T Consensus 174 A~~~~~~l~~ 183 (183)
T PF13460_consen 174 AKAIVEALEN 183 (183)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhCC
Confidence 9999998863
|
... |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=183.22 Aligned_cols=227 Identities=17% Similarity=0.092 Sum_probs=162.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+|+|+||||+|++|.+++++|+++|++|++++|...... .....+.....++.++.+|+.+.+++.+++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAA---ATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34479999999999999999999999999999988543222 22222222234588999999999999888754
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+++..... ....+....++.|+.++.++++.+. +.+.+++|++||...++. +.
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~----------~~ 150 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV----------GY 150 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc----------CC
Confidence 2799999999876542 2233446678899999999988874 446678999999766511 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+++.++.+ .+++++++||+.++|+..... .............|
T Consensus 151 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~--------------~~~~~~~~~~~~~~----- 211 (251)
T PRK12826 151 PGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNL--------------GDAQWAEAIAAAIP----- 211 (251)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhc--------------CchHHHHHHHhcCC-----
Confidence 23568999999999999887665 589999999999999853211 00111122222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~ 316 (393)
...+++++|+++++..++..... ..+++|++.++.
T Consensus 212 -----------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 212 -----------LGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred -----------CCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 12478999999999998865432 245899997664
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=184.30 Aligned_cols=246 Identities=19% Similarity=0.139 Sum_probs=170.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++|+||||+|+||.+++++|+++|++|++++|.........+.+.... ...++.++.+|+.+++++.+++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-GAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-CCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999875432222222222111 124678899999999998887754
Q ss_pred -CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... .........++.|+.++.++++++.+. +..++|++||...+...
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 153 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH---------- 153 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC----------
Confidence 2799999999864221 112234567889999999998876543 34589999997765321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+..+|+.+|...|.+++.++.+ .+++++++||+.+.++..... .-............+
T Consensus 154 -~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 215 (276)
T PRK05875 154 -RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPI-------------TESPELSADYRACTP---- 215 (276)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccc-------------ccCHHHHHHHHcCCC----
Confidence 23678999999999999998766 469999999999876532100 000111111111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCcc----cHHHHHHHHHHHhCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGR----SVKEFVEACKKATGV 333 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~----s~~el~~~i~~~~g~ 333 (393)
...+++++|+++++.+++..+.. ..+++|+++++..+ +..|+++.+.+..|.
T Consensus 216 ------------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (276)
T PRK05875 216 ------------LPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADGL 272 (276)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHHH
Confidence 23367899999999999886432 23579999988776 777777777765443
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=184.09 Aligned_cols=235 Identities=16% Similarity=0.107 Sum_probs=159.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
|++||||||+|+||++|+++|+++|++|++++|...........+. ....++.++.+|+.+.+++.++++. .
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVAT---DAGGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999885432222222221 1234688899999999977665543 4
Q ss_pred CCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+|+....... .......++.|+.++..+++.+ ++.+.+++|++||...+...+ .
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~-----------~ 146 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASP-----------F 146 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCC-----------C
Confidence 68999999997644221 2233456778999988877776 556778999999976654321 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...|.+++.++.+ .+++++++||+.++++... ..+..... ... ......
T Consensus 147 ~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~------------------~~~~~~~~-~~~-~~~~~~ 206 (255)
T TIGR01963 147 KSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE------------------KQIADQAK-TRG-IPEEQV 206 (255)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH------------------HHHHhhhc-ccC-CCchHH
Confidence 468999999999999887665 4899999999999987311 11111100 000 000000
Q ss_pred c-ccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 273 D-YNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 273 ~-~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
. ..+..+...++++|++|+|++++.+++... ...++.|+++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 207 IREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred HHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 0 000123455689999999999999997642 22457899986643
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=182.37 Aligned_cols=243 Identities=13% Similarity=0.033 Sum_probs=168.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++|+||||+|+||++++++|+++|++|++++|...... .+.... ...+.++.+|+.+.+++.++++. .
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~----~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLA----DLAEKY--GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHhc--cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999987532211 111111 24678889999999998877754 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||...... ...+....+++|+.++..+++.+ ++.+.+++|++||...+.... .
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~-----------~ 145 (275)
T PRK08263 77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFP-----------M 145 (275)
T ss_pred CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCC-----------C
Confidence 7899999999764422 22355668889999987777765 556677999999977764432 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|++++++||+.+..+........ .... .....+......
T Consensus 146 ~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~--~~~~----~~~~~~~~~~~~---------- 209 (275)
T PRK08263 146 SGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKR--ATPL----DAYDTLREELAE---------- 209 (275)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCcccccccc--CCCc----hhhhhHHHHHHH----------
Confidence 568999999999999888765 689999999998876542110000 0000 011111111111
Q ss_pred cccCCCCcccccc-ccHHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhC
Q 016208 273 DYNTADGTCVRDY-IDVTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATG 332 (393)
Q Consensus 273 ~~~~~~g~~~~~~-i~v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g 332 (393)
......+ ++++|++++++.+++.+... ..|.+++ ++.+++.++.+.+.+.-+
T Consensus 210 ------~~~~~~~~~~p~dva~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 210 ------QWSERSVDGDPEAAAEALLKLVDAENPP--LRLFLGSGVLDLAKADYERRLATWEE 263 (275)
T ss_pred ------HHHhccCCCCHHHHHHHHHHHHcCCCCC--eEEEeCchHHHHHHHHHHHHHHHHHH
Confidence 1112234 78999999999999976554 2454544 467899999999888643
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=193.54 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=164.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhc----C--CCCccEEEEccCCCHHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELF----P--QPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~--~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
+.+++||||||+|+||++++++|+++|++|++++|.........+.+..+. . ...++.++.+|+.+.+++.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 455799999999999999999999999999999885433222222221110 0 0135889999999999999998
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
.++|+|||++|.... ...+....+++|+.++.+++++|...++++||++||.+++.... .+. .......|.
T Consensus 158 --ggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~----p~~-~~~sk~~~~ 228 (576)
T PLN03209 158 --GNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF----PAA-ILNLFWGVL 228 (576)
T ss_pred --cCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc----ccc-chhhHHHHH
Confidence 789999999986532 11234567889999999999999999999999999987642110 111 123456688
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|..+|+.+.. .|+++++||||.++++..... . . .. +.+.. .+.
T Consensus 229 ~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~-~-----------t------------~~-v~~~~------~d~ 273 (576)
T PLN03209 229 CWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK-E-----------T------------HN-LTLSE------EDT 273 (576)
T ss_pred HHHHHHHHHHHH----cCCCEEEEECCeecCCccccc-c-----------c------------cc-eeecc------ccc
Confidence 889999988875 799999999999987742210 0 0 00 11100 111
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHH
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACK 328 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~ 328 (393)
.....+..+|||+++++++.++......+|.+.++.......+.+.+.
T Consensus 274 ~~gr~isreDVA~vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 274 LFGGQVSNLQVAELMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred cCCCccCHHHHHHHHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHH
Confidence 112358899999999999986654444799988775433344444443
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=180.98 Aligned_cols=230 Identities=19% Similarity=0.087 Sum_probs=158.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|...........+. ....++.++.+|+.+.+++.++++.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ---KAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 44799999999999999999999999999999886443332222222 2235788899999999999888754
Q ss_pred CCCcEEEEcccccCccCCc----cChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+|+........ ......++.|+.+ +..+++.+++.+.+++|++||...+... .
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~-----------~ 148 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS-----------A 148 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC-----------C
Confidence 3799999999976443222 2234466788888 5555555566678899999997655322 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC-CCCce---
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG-IIPGL--- 267 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 267 (393)
+.+.|+.+|...+.+.+.++.+ .++++.++||+.+++|.... .+...... +.+..
T Consensus 149 ~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~------------------~~~~~~~~~~~~~~~~~ 210 (258)
T PRK12429 149 GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK------------------QIPDLAKERGISEEEVL 210 (258)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh------------------hhhhhccccCCChHHHH
Confidence 4678999999999988887665 57999999999999875321 01010000 00000
Q ss_pred -eEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 268 -KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 268 -~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+ .....+.+++++|+|+++..++..... ..++.|++.++
T Consensus 211 ~~~~~------~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 211 EDVLL------PLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred HHHHh------ccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 0000 122345799999999999998875432 23578988765
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=178.17 Aligned_cols=225 Identities=19% Similarity=0.141 Sum_probs=161.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++++||||+|+||.+++++|+++|++|++++|.........+.+. .....+.++.+|+++.+++.++++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIV---ADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999885432222222222 1224677899999999998877754
Q ss_pred CCCcEEEEcccccCc-------cCCccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYV-------GESTLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~-------~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||.... ..........+++|+.++.++++++... +.+++|++||...|.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 150 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL----------- 150 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-----------
Confidence 368999999997531 1122334557889999999988888753 356999999987763
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+.++|+.+|+..|.+++.++++ .++++++++||.+..+.... .....+.+...+..+ .
T Consensus 151 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~--------------~~~~~~~~~~~~~~~-~- 211 (250)
T PRK07774 151 ---YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRT--------------VTPKEFVADMVKGIP-L- 211 (250)
T ss_pred ---CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccc--------------cCCHHHHHHHHhcCC-C-
Confidence 3568999999999999998876 47999999999987764321 111223333333332 1
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
.-+.+++|++++++.++.... ...+++||+.+++.++
T Consensus 212 --------------~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 212 --------------SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQIIR 249 (250)
T ss_pred --------------CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeecc
Confidence 114578999999999887542 2345799998876543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=175.81 Aligned_cols=225 Identities=17% Similarity=0.124 Sum_probs=160.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|++|.+|+++|+++|++|++++|......... ..+.....++.++.+|+.+++++.++++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA---AELRAAGGEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH---HHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999988643322222 22222235688899999999988877754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..+|+|||+||....... .......++.|+.+..++++++. +.+.+++|++||...... .
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~-----------~ 148 (246)
T PRK05653 80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTG-----------N 148 (246)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccC-----------C
Confidence 367999999987644221 12335578899999999988884 456789999999654321 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+++.++++ .+++++++||+.++++... .+............+
T Consensus 149 ~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~---------------~~~~~~~~~~~~~~~----- 208 (246)
T PRK05653 149 PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE---------------GLPEEVKAEILKEIP----- 208 (246)
T ss_pred CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh---------------hhhHHHHHHHHhcCC-----
Confidence 34678999999999999888765 5899999999999997532 112222222222111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+++++|+++++..++.... ...++.|+++++.
T Consensus 209 -----------~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 209 -----------LGRLGQPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 2457899999999999887432 2245799998765
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=174.96 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=159.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||.+++++|+++|++|+++.+... ....+...++.....++.++.+|+.+++++.+++++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK--EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999987654322 222222233322234688999999999999888865
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..+|+|||+|+...... ........++.|+.++.++++++.. .+..++|++||...+...
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 150 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG----------- 150 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC-----------
Confidence 46899999999754322 1245666789999999999988864 344689999996544221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+++.++.+ .++++++++|+.+.++... .............
T Consensus 151 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~---------------~~~~~~~~~~~~~------- 208 (247)
T PRK12935 151 FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVA---------------EVPEEVRQKIVAK------- 208 (247)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhh---------------hccHHHHHHHHHh-------
Confidence 23578999999999888877665 4899999999998765311 1111111122111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
...+.+.+++|++++++.+++......++.||+.++
T Consensus 209 ---------~~~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 209 ---------IPKKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred ---------CCCCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 123568999999999999887543234589999776
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=177.37 Aligned_cols=228 Identities=19% Similarity=0.182 Sum_probs=165.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
|+|+||||.+|+++++.|++.+++|+++.|... ......++. .+++++.+|+.|.+++.+++ .++|+||.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~--~~~~~~l~~-----~g~~vv~~d~~~~~~l~~al--~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS--SDRAQQLQA-----LGAEVVEADYDDPESLVAAL--KGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH--HHHHHHHHH-----TTTEEEES-TT-HHHHHHHH--TTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc--hhhhhhhhc-----ccceEeecccCCHHHHHHHH--cCCceEEee
Confidence 799999999999999999999999999998652 222233333 47899999999999999999 899999988
Q ss_pred ccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016208 132 AAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIII 211 (393)
Q Consensus 132 A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~ 211 (393)
.+.... .......+++++|+++|+++||+.|....+. +.....|..++...|...|++++
T Consensus 72 ~~~~~~------------~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~--------~~~~~~p~~~~~~~k~~ie~~l~ 131 (233)
T PF05368_consen 72 TPPSHP------------SELEQQKNLIDAAKAAGVKHFVPSSFGADYD--------ESSGSEPEIPHFDQKAEIEEYLR 131 (233)
T ss_dssp SSCSCC------------CHHHHHHHHHHHHHHHT-SEEEESEESSGTT--------TTTTSTTHHHHHHHHHHHHHHHH
T ss_pred cCcchh------------hhhhhhhhHHHhhhccccceEEEEEeccccc--------ccccccccchhhhhhhhhhhhhh
Confidence 875421 1255678999999999999999755533331 12223344556678999998887
Q ss_pred HHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH--HhCCCCceeEcCccccCCCCccccccc-cH
Q 016208 212 DFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA--ARGIIPGLKIRGTDYNTADGTCVRDYI-DV 288 (393)
Q Consensus 212 ~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~g~~~~~~i-~v 288 (393)
+ .+++++++|++.++.. +...+... .......+.+.+ +++....++ +.
T Consensus 132 ~----~~i~~t~i~~g~f~e~-------------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 182 (233)
T PF05368_consen 132 E----SGIPYTIIRPGFFMEN-------------------LLPPFAPVVDIKKSKDVVTLPG------PGNQKAVPVTDT 182 (233)
T ss_dssp H----CTSEBEEEEE-EEHHH-------------------HHTTTHHTTCSCCTSSEEEEET------TSTSEEEEEEHH
T ss_pred h----ccccceeccccchhhh-------------------hhhhhcccccccccceEEEEcc------CCCccccccccH
Confidence 7 6999999999987753 22222221 111111245554 666666675 99
Q ss_pred HHHHHHHHHHHhcCCCC-CcceEEecCCCcccHHHHHHHHHHHhCCCcceE
Q 016208 289 TDLVDAHVLALANAKPG-KVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE 338 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~ 338 (393)
+|++++++.++..+... .+..+.+++ +.+|..|+++.+.+.+|+++++.
T Consensus 183 ~Dvg~~va~il~~p~~~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y~ 232 (233)
T PF05368_consen 183 RDVGRAVAAILLDPEKHNNGKTIFLAG-ETLTYNEIAAILSKVLGKKVKYV 232 (233)
T ss_dssp HHHHHHHHHHHHSGGGTTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHcChHHhcCCEEEEeCC-CCCCHHHHHHHHHHHHCCccEEe
Confidence 99999999999986554 456787754 78999999999999999987653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=187.20 Aligned_cols=250 Identities=14% Similarity=0.049 Sum_probs=166.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+++++||||||+|+||++++++|+++|++|++++|...... +...++.....++.++.+|++|.+++.++++.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD---RAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHH---HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988543222 22222222234678899999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCC------cEEEEeecceeecCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKV------KTLIYSSTCATYGEPDKMPI 187 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~------~~~V~~SS~~vyg~~~~~~~ 187 (393)
.++|+|||+||...... ........+++|+.++.+++++ +.+.+. .++|++||...+...
T Consensus 81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 155 (287)
T PRK06194 81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP----- 155 (287)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-----
Confidence 26899999999865422 2233455688999998887666 444433 589999997776432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhC-----CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC
Q 016208 188 TESTPQKPINPYGKAKKMSEDIIIDFSKTT-----NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262 (393)
Q Consensus 188 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
.+..+|+.+|...|.+++.++.+. ++++..+.|+.+..+- .....
T Consensus 156 ------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~------------------------~~~~~ 205 (287)
T PRK06194 156 ------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI------------------------WQSER 205 (287)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc------------------------ccccc
Confidence 235689999999999999887753 3666677776554321 01111
Q ss_pred CCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEc-c
Q 016208 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL-S 341 (393)
Q Consensus 263 ~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~-~ 341 (393)
..+ ..+.+ ++.+.++|++++|++.++.... .++..|+++.+.+.+......... +
T Consensus 206 ~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------------~~s~~dva~~i~~~~~~~~~~~~~~~ 261 (287)
T PRK06194 206 NRP-ADLAN------TAPPTRSQLIAQAMSQKAVGSG-----------------KVTAEEVAQLVFDAIRAGRFYIYSHP 261 (287)
T ss_pred cCc-hhccc------CccccchhhHHHHHHHhhhhcc-----------------CCCHHHHHHHHHHHHHcCCeEEEcCH
Confidence 223 34444 6778889999998887653210 168889999888876543332222 2
Q ss_pred CCCCCCcceecCHHHHH
Q 016208 342 RRPGDYAEVYSDPSKIR 358 (393)
Q Consensus 342 ~~~~~~~~~~~d~~k~~ 358 (393)
....+......|.++++
T Consensus 262 ~~~~~~~~~~~~~~~~~ 278 (287)
T PRK06194 262 QALASVRTRMEDIVQQR 278 (287)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 22223334445555553
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=177.22 Aligned_cols=231 Identities=13% Similarity=0.085 Sum_probs=163.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||+++++.|+++|++|+++.+.... ....+....+.....++.++.+|+.+.+++.+++++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEE-QDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcch-HHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999887663221 111122222222234678899999999998887754
Q ss_pred -CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||..... ....+....+++|+.++..+++++... ...++|++||...|....
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 200 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP----------- 200 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC-----------
Confidence 3799999999965321 123456778999999999999998753 224899999988775432
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+++.++.+ .|+++.+++||.+.++..... .........+....+
T Consensus 201 ~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~-------------~~~~~~~~~~~~~~p------ 261 (300)
T PRK06128 201 TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG-------------GQPPEKIPDFGSETP------ 261 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC-------------CCCHHHHHHHhcCCC------
Confidence 2457999999999999998876 589999999999998742210 111111222222222
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+.+.+|++.++++++.... ...+++|++.++..+
T Consensus 262 ----------~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 262 ----------MKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred ----------CCCCcCHHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 2236689999999999887532 224579999877544
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=178.37 Aligned_cols=243 Identities=15% Similarity=0.115 Sum_probs=160.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.++++|||||+|++|+++++.|+++|++|++++|.........+.+... ....++.++.+|+.|++++.+ +++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQL-NLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 3468999999999999999999999999999988543322222222221 112468899999999998876 433
Q ss_pred CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||....... .......+++|+.++.++++.+ ++.+.+++|++||...+.. ..
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~-----------~~ 148 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVG-----------FP 148 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCC-----------CC
Confidence 468999999997643221 1234456789999988887775 5566779999999644322 12
Q ss_pred CCChHHHHHHHHHHHHHHHHh---hCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSK---TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...|.+++.++. ..|++++++|||.+.++........... .....+.+... ...+....
T Consensus 149 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~------- 219 (280)
T PRK06914 149 GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAEN-QSETTSPYKEY-MKKIQKHI------- 219 (280)
T ss_pred CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhcccccccc-ccccccchHHH-HHHHHHHH-------
Confidence 357899999999999988763 3699999999999988732210000000 00000011111 11111100
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHH
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK 321 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~ 321 (393)
......+++++|+|++++.+++++... ..|+++++..+++.
T Consensus 220 -------~~~~~~~~~~~dva~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 -------NSGSDTFGNPIDVANLIVEIAESKRPK--LRYPIGKGVKLMIL 260 (280)
T ss_pred -------hhhhhccCCHHHHHHHHHHHHcCCCCC--cccccCCchHHHHH
Confidence 011234788999999999999977664 47999877665554
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=179.34 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=155.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|...... +....+.....++.++.+|+++.+++.++++.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE---ELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45589999999999999999999999999999887432211 21222211224678889999999999887754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||....... .......+++|+.++.++++.+. +.+..++|++||...+...+
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~---------- 154 (274)
T PRK07775 85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRP---------- 154 (274)
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC----------
Confidence 368999999997643221 22344567899999999888864 33456899999987764321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
+...|+.+|...|.+++.++.. .|++++++|||.+..+.... .. . .....+...... +
T Consensus 155 -~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~-~~--~--------~~~~~~~~~~~~-------~ 215 (274)
T PRK07775 155 -HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWS-LP--A--------EVIGPMLEDWAK-------W 215 (274)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCccccc-CC--h--------hhhhHHHHHHHH-------h
Confidence 3568999999999999998765 38999999998875542110 00 0 111111111111 0
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEec
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVG 313 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~ 313 (393)
.+...+.++|++|+|++++.+++.+.. +.+||+.
T Consensus 216 -------~~~~~~~~~~~~dva~a~~~~~~~~~~--~~~~~~~ 249 (274)
T PRK07775 216 -------GQARHDYFLRASDLARAITFVAETPRG--AHVVNME 249 (274)
T ss_pred -------cccccccccCHHHHHHHHHHHhcCCCC--CCeeEEe
Confidence 011235689999999999999986532 2588874
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=175.05 Aligned_cols=235 Identities=17% Similarity=0.099 Sum_probs=165.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++++||||+|+||.+++++|+++|++|++++|........ ...+ ...++.++.+|+.+.+++..++++ .+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~---~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAF---ADAL--GDARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HHHh--cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999998754322222 2222 124688899999999999877754 26
Q ss_pred CcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||++|........ ......+..|+.++.++++++. +.+.+++|++||...+... ..
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 145 (257)
T PRK07074 78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL------------GH 145 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC------------CC
Confidence 89999999975432211 1223456689998888887773 4456789999995443211 12
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...+.+++.++.+ .|++++.+||+.++++...... ...+.+......
T Consensus 146 ~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~------------~~~~~~~~~~~~----------- 202 (257)
T PRK07074 146 PAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARV------------AANPQVFEELKK----------- 202 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccc------------ccChHHHHHHHh-----------
Confidence 47999999999999998866 4799999999999887421100 001111111111
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHHHHHHH
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKK 329 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~~~i~~ 329 (393)
....+++++++|+++++..++... ....+..+++.++...++.|+++.+.+
T Consensus 203 -----~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 203 -----WYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred -----cCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 112357999999999999999643 222357888988888899999988754
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=173.86 Aligned_cols=233 Identities=19% Similarity=0.120 Sum_probs=156.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|... .. +...++......+.++.+|+++.+++.+++++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VH---EVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HH---HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988531 11 22222222234677899999999888877754
Q ss_pred -CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHH----HHHHHhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVI----LEAMAAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||.... . ....+....+++|+.++..+ ++.+++.+..++|++||...++.
T Consensus 82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----------- 150 (260)
T PRK12823 82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI----------- 150 (260)
T ss_pred cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-----------
Confidence 379999999985321 1 12233455677888776644 45555566679999999876532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCC--CCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGR--LGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
+..+|+.+|...+.+.+.++.+. |+++++++||.+++|..... ...... ......+.+........| +
T Consensus 151 --~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ 223 (260)
T PRK12823 151 --NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSE----QEKAWYQQIVDQTLDSSL-M 223 (260)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccc----cccccHHHHHHHHhccCC-c
Confidence 23579999999999999988764 89999999999999731100 000000 000233334444443333 2
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~ 316 (393)
. -+.+++|+++++++++..... ..++.|++.+++
T Consensus 224 ~---------------~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 224 K---------------RYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred c---------------cCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 2 244789999999998875322 235788887654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=177.67 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=157.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||.+++++|+++|++|++++|...... .....++.....++.++.+|+++++++..++++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRA--NKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhH--HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 34479999999999999999999999999999887543211 111111211124678899999999998887754
Q ss_pred -CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 123 -NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
.++|+|||+|+.... ...++...+++|+.++.++++++... ...++|++||........ .+ +.....+|
T Consensus 82 ~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~--~~~~~~~Y 153 (248)
T PRK07806 82 FGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK--TMPEYEPV 153 (248)
T ss_pred CCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc--CCccccHH
Confidence 369999999986432 22345567889999999999999864 234899999954321111 11 11226789
Q ss_pred HHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 200 GKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
+.+|..+|.+++.++.+ .++++++++|+.+-++-.. .+.. ...+ -.+..
T Consensus 154 ~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~-------------------~~~~---~~~~-~~~~~----- 205 (248)
T PRK07806 154 ARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA-------------------TLLN---RLNP-GAIEA----- 205 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh-------------------hhhc---cCCH-HHHHH-----
Confidence 99999999999998765 6899999998877664211 0000 0000 00000
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
.......+++++|++++++.+++.... .+++|++++++.+
T Consensus 206 -~~~~~~~~~~~~dva~~~~~l~~~~~~-~g~~~~i~~~~~~ 245 (248)
T PRK07806 206 -RREAAGKLYTVSEFAAEVARAVTAPVP-SGHIEYVGGADYF 245 (248)
T ss_pred -HHhhhcccCCHHHHHHHHHHHhhcccc-CccEEEecCccce
Confidence 000123589999999999999985533 3579999887643
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=174.18 Aligned_cols=230 Identities=17% Similarity=0.086 Sum_probs=161.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||.+++++|+++|++|++++|...........+. .....+.++.+|+.+.+++.++++.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK---GQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999999999998875432222222222 1124578899999999999888754
Q ss_pred -CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..+|+|||+||......... .....+++|+.++.++++++.+. +.+++|++||..... +.
T Consensus 85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-----------~~ 153 (255)
T PRK07523 85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL-----------AR 153 (255)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc-----------CC
Confidence 35999999999764432222 23556779999999999888643 567999999964432 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+++.++.+ .|+++.++||+.+.++..... .....+...+....|
T Consensus 154 ~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~-------------~~~~~~~~~~~~~~~----- 215 (255)
T PRK07523 154 PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAAL-------------VADPEFSAWLEKRTP----- 215 (255)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhh-------------ccCHHHHHHHHhcCC-----
Confidence 24678999999999999988764 689999999999998742210 000112222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
...+.+++|+|+++++++.... .-.++.+++.++...|
T Consensus 216 -----------~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 216 -----------AGRWGKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 2336789999999999987532 2235789998775544
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=171.36 Aligned_cols=224 Identities=15% Similarity=0.118 Sum_probs=159.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhh-hhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV-LQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+|+|+||||+|+||++++++|+++|++|++++|.........+. ..++......+.++.+|+.+.+++.++++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE 84 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999988754333222222 222222235688999999999998887753
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH-----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....++.|+.++.++++++. +.+.+++|++||...+...
T Consensus 85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 154 (249)
T PRK12827 85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN---------- 154 (249)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC----------
Confidence 46999999999765221 223345678899999999999987 4566789999997666432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+++.++.+ .+++++++||+.+.++.... .+. ........+
T Consensus 155 -~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~--------------~~~---~~~~~~~~~---- 212 (249)
T PRK12827 155 -RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADN--------------AAP---TEHLLNPVP---- 212 (249)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccc--------------cch---HHHHHhhCC----
Confidence 23568999999999998887765 48999999999999874321 111 122222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+.+++|+++++..++... ....++.+++.++
T Consensus 213 ------------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 213 ------------VQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred ------------CcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 112457899999999888643 2223568888654
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=174.14 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=129.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|..... +.+... ...++.++.+|+.+.+++.++++.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~l~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR----ADFEAL--HPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH----HHHHhh--cCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999998853221 112111 124678899999999998887754
Q ss_pred CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||......... .....+++|+.++.++++++. +.+.+++|++||...+... .
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~-----------~ 145 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM-----------P 145 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC-----------C
Confidence 26899999999764332222 234568899999999998853 4456789999997665332 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
+...|+.+|...|.+++.++.+ .|++++++||+.+.++.
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 187 (277)
T PRK06180 146 GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDW 187 (277)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCc
Confidence 4678999999999999888765 58999999999998764
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=171.28 Aligned_cols=225 Identities=17% Similarity=0.117 Sum_probs=155.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++|+||||+|+||.+++++|+++|++|+++ .|.. ....+....+......+.++.+|++|.+++.+++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~---~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK---QAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999875 3422 222222222222234678899999999999888764
Q ss_pred -------CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -------NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -------~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||......... .....+++|+.++.++++.+... +.+++|++||..++...
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~------- 154 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF------- 154 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC-------
Confidence 26999999999764432222 22456679999999999988753 33589999998776432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.+...|+.+|.+.|.+.+.++.+ .++++++++|+.++++-.... ..-..+.......
T Consensus 155 ----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~-------------~~~~~~~~~~~~~--- 214 (254)
T PRK12746 155 ----TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKL-------------LDDPEIRNFATNS--- 214 (254)
T ss_pred ----CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhh-------------ccChhHHHHHHhc---
Confidence 23568999999999998887765 579999999999988742110 0001111111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
.....+++++|+++++..++..... ..+++|+++++
T Consensus 215 -------------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 -------------SVFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred -------------CCcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 1123467899999999988875422 23579999766
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=176.72 Aligned_cols=234 Identities=16% Similarity=0.106 Sum_probs=156.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++||||||+|+||++++++|+++|++|++++|........ .... .. .++.++.+|+.+++++.+++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~---~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT---AARL-PG-AKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HHHH-hc-CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999998853322211 1111 11 2568899999999998887754
Q ss_pred -CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHH----hcCC-cEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMA----AHKV-KTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||.... .....+....++.|+.++.++++.+. ..+. +++|++||......
T Consensus 84 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~---------- 153 (264)
T PRK12829 84 FGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLG---------- 153 (264)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccC----------
Confidence 379999999997622 11223456788999999999888774 3344 57888887543211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...|.+++.++.+ .+++++++||+.++|+.... ............. ..
T Consensus 154 -~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~---------------~~~~~~~~~~~~~--~~ 215 (264)
T PRK12829 154 -YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRR---------------VIEARAQQLGIGL--DE 215 (264)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHH---------------HhhhhhhccCCCh--hH
Confidence 112457999999999999988765 48999999999999985321 1110000000000 00
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
..... ........+++++|+++++..++... ....++.|++.++.
T Consensus 216 ~~~~~---~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~ 261 (264)
T PRK12829 216 MEQEY---LEKISLGRMVEPEDIAATALFLASPAARYITGQAISVDGNV 261 (264)
T ss_pred HHHHH---HhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCCc
Confidence 00000 00011235899999999998887642 22245799998764
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=171.63 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=156.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
..++||||||+|+||.+++++|+++|++|++++|.......... .+.. ..++.++.+|+.+++++..++++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA---EILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 44799999999999999999999999999999886533222222 2211 24688999999999999888754
Q ss_pred CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+|+...... ........++.|+.++..+++.+. +.+.+++|++||...+...
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 148 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR----------- 148 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC-----------
Confidence 26899999999743221 223445678899988777666654 4567799999998776432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+++.++.+ .++++++++||.+..+....... ..............
T Consensus 149 ~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~-----------~~~~~~~~~~~~~~------ 211 (251)
T PRK07231 149 PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMG-----------EPTPENRAKFLATI------ 211 (251)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhc-----------ccChHHHHHHhcCC------
Confidence 23678999999999999888765 38999999999997653221000 00001111111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~ 316 (393)
....+++++|+|++++.++..... ..+..+.+.++.
T Consensus 212 ----------~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 212 ----------PLGRLGTPEDIANAALFLASDEASWITGVTLVVDGGR 248 (251)
T ss_pred ----------CCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECCCc
Confidence 123478999999999998875432 234567776553
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-21 Score=172.70 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=158.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++|+||||+|+||++++++|.++|++|++++|..... ..+....+.....++.++.+|+++++++.++++. ..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE--LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999998753321 1122222222234688999999999988877654 37
Q ss_pred CcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHHhc-----C-----CcEEEEeecceeecCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMAAH-----K-----VKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~-----~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
+|+|||+||..... .........+++|+.++.++++++... + .+++|++||...+...
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 154 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS------ 154 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC------
Confidence 99999999975321 122345567889999999998887542 1 4679999997664322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
.+...|+.+|...|.+++.++.+ .|++++++||+.+.++... .+............
T Consensus 155 -----~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~---------------~~~~~~~~~~~~~~- 213 (256)
T PRK12745 155 -----PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTA---------------PVTAKYDALIAKGL- 213 (256)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccc---------------ccchhHHhhhhhcC-
Confidence 23578999999999999988865 6899999999999886422 11111111111111
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCcc
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGR 318 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~ 318 (393)
. ....+.+++|+++++..++..... ..+..|++.++..+
T Consensus 214 -~-------------~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 214 -V-------------PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGLSI 253 (256)
T ss_pred -C-------------CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCeec
Confidence 1 123467999999999988864321 23579999776543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=176.44 Aligned_cols=233 Identities=17% Similarity=0.114 Sum_probs=161.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
..++|+||||+|+||.+++++|+++|++|++++|...... +...++ ...+.++.+|+.+.+++.+++++
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR---LAALEI---GPAAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH---HHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3478999999999999999999999999999987543222 111222 23578899999999999888764
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcC-----CcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHK-----VKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+|+...... ...+....+++|+.++.++++++.... ..++|++||..... +.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~ 147 (257)
T PRK07067 79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR-----------GE 147 (257)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC-----------CC
Confidence 37999999999754322 223456678899999999999886431 24799999954321 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC--cee
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP--GLK 268 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++|+.++++..+. ....+ .......+ ...
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~---------------~~~~~-~~~~~~~~~~~~~ 211 (257)
T PRK07067 148 ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQ---------------VDALF-ARYENRPPGEKKR 211 (257)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhh---------------hhhhh-hhccCCCHHHHHH
Confidence 24679999999999999888774 68999999999999874211 00000 00000000 000
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCccc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGRS 319 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s 319 (393)
..+ .+...+.+.+++|+|+++.+++..... ..+++|++.+++.+|
T Consensus 212 ~~~------~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 212 LVG------EAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred HHh------hcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecCCEeCC
Confidence 011 233456789999999999999885432 245799998876543
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=163.96 Aligned_cols=308 Identities=19% Similarity=0.217 Sum_probs=226.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+....+|||||+-|++|..+++.|..+ |.+.++++.-....... ...-.++..|+.|...+++.+-...
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V----------~~~GPyIy~DILD~K~L~eIVVn~R 110 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV----------TDVGPYIYLDILDQKSLEEIVVNKR 110 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh----------cccCCchhhhhhccccHHHhhcccc
Confidence 445579999999999999999999766 76555443211111100 1355678899999999999987788
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC-CCCCCCCCCCCCCChHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD-KMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~p~~~Y~~sK 203 (393)
+|.+||..+.... .-+.+...+.++|+.|..|+++.|++++. ++..-|+.++||... .+|..+-.-..|.+.||.||
T Consensus 111 IdWL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSK 188 (366)
T KOG2774|consen 111 IDWLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSK 188 (366)
T ss_pred cceeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhH
Confidence 9999999875422 23566677889999999999999999988 566689999999753 34555555677899999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
..+|.+.+.+..+.|+++-.+|++.++.....|.- ... ..+..+..+..+++-.+.+ .++...
T Consensus 189 VHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pggg--ttd-------ya~A~f~~Al~~gk~tCyl--------rpdtrl 251 (366)
T KOG2774|consen 189 VHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGG--TTD-------YAIAIFYDALQKGKHTCYL--------RPDTRL 251 (366)
T ss_pred HHHHHHHHHHHhhcCccceecccCcccccCCCCCC--cch-------hHHHHHHHHHHcCCccccc--------CCCccC
Confidence 99999999999999999999999999987533211 111 3445566677777644555 457778
Q ss_pred ccccHHHHHHHHHHHHhcCCCC-CcceEEecCCCcccHHHHHHHHHHHhC-CCcceEEcc-CCCCCCcceecCHHHHHhh
Q 016208 284 DYIDVTDLVDAHVLALANAKPG-KVGIYNVGTGKGRSVKEFVEACKKATG-VNIKVEYLS-RRPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~g-~~~~~~~~~-~~~~~~~~~~~d~~k~~~~ 360 (393)
.+++.+||-++++..+..+... +-++||++ +-..|-.|+++++.+... .++....-. ....+.-...+|.+.++++
T Consensus 252 pmmy~~dc~~~~~~~~~a~~~~lkrr~ynvt-~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~ 330 (366)
T KOG2774|consen 252 PMMYDTDCMASVIQLLAADSQSLKRRTYNVT-GFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTE 330 (366)
T ss_pred ceeehHHHHHHHHHHHhCCHHHhhhheeeec-eeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhH
Confidence 8999999999999988855321 23699995 668999999999998773 333322110 0111222345888999999
Q ss_pred CCCceeccCHHHHHHHHHHHHHhc
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
..|+.++ ++-..+..++.-.+.+
T Consensus 331 wh~~h~~-~l~~~i~~~i~~~~~n 353 (366)
T KOG2774|consen 331 WHEKHSL-HLLSIISTVVAVHKSN 353 (366)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHhh
Confidence 9999998 8888887777766554
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=170.58 Aligned_cols=216 Identities=16% Similarity=0.118 Sum_probs=157.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++++||||||+|+||++++++|+++|++|++++|......... .++. ...+.++.+|+.|.+++.++++.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~---~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL---PGVP--ADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH---HHHh--hcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999988543322222 2221 13577888999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+++...... ........+..|+.++.++++++. +.+.+++|++||...++..
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 148 (239)
T PRK12828 80 FGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG----------- 148 (239)
T ss_pred hCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC-----------
Confidence 37999999998653221 122334567899999999888774 4567899999998877543
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+++.++.. .++++.++||+.++++.... ..+
T Consensus 149 ~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~--------------------------~~~----- 197 (239)
T PRK12828 149 PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRA--------------------------DMP----- 197 (239)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhh--------------------------cCC-----
Confidence 23578999999999998877664 58999999999999873110 000
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~ 317 (393)
......+++++|+++++..++..... ..++.+++.+++.
T Consensus 198 --------~~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 198 --------DADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGGVA 237 (239)
T ss_pred --------chhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCCEe
Confidence 01122378999999999998885432 2357888876653
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-21 Score=171.57 Aligned_cols=227 Identities=16% Similarity=0.145 Sum_probs=156.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+++++||||+|+||++++++|+++|++|+++ .|.........+.++ ....++.++.+|+++++++..++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE---ALGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999998874 443322222222222 2235688899999999999888765
Q ss_pred -CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||......... .....+++|+.++.++++++.. .+.+++|++||...+.. .
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------~ 148 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRY-----------L 148 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccC-----------C
Confidence 26999999998754332222 2233677999998888887764 34569999999655422 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|.+.|.+++.++.+ .++++++++|+.+..+.... +. . ...+........+
T Consensus 149 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~-~~-----------~-~~~~~~~~~~~~~----- 210 (250)
T PRK08063 149 ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKH-FP-----------N-REELLEDARAKTP----- 210 (250)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhh-cc-----------C-chHHHHHHhcCCC-----
Confidence 24678999999999999988765 68999999999997764211 00 0 0111222221111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+++++|+|++++.++..+. ...++.+++.++..
T Consensus 211 -----------~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 211 -----------AGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 1236899999999999887543 22357888876654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=170.67 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=158.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++||||||+|+||++++++|+++|++|++++|...........+ .....++.++.+|+.+.+++.++++.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI---RAKGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999887543222222222 22235688999999999998887753
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+|+...... ........+++|+.++.++++++. +.+.+++|++||...+.....
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~---------- 148 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSG---------- 148 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCC----------
Confidence 36899999998653221 122234578899999998877765 456679999999877754322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
...|+.+|.+.+.+.+.++.+ .+++++++||+.++++.....++.. .-...+...+....+
T Consensus 149 -~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------ 212 (250)
T TIGR03206 149 -EAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGA---------ENPEKLREAFTRAIP------ 212 (250)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhcc---------CChHHHHHHHHhcCC------
Confidence 468999999999999888776 4899999999999887422110000 000112222222222
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+|+++..++..+. ...++++++.++
T Consensus 213 ----------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 213 ----------LGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred ----------ccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 1124578999999999887532 224579988765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=172.63 Aligned_cols=230 Identities=13% Similarity=0.074 Sum_probs=158.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++||||||+|+||++++++|+++|++|+++.|.... .....+..+.....++.++.+|+++++++..++++
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE--EMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDR 81 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH--HHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999887653321 11122222221224567889999999988877754
Q ss_pred -CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|+|||+||........ ......+++|+.+..++++++.+. ...++|++||...+.. ..+
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~~ 150 (252)
T PRK06077 82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP-----------AYG 150 (252)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC-----------CCC
Confidence 4789999999975432221 122456789999999888888754 2358999999877642 334
Q ss_pred CChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
...|+.+|...|.+++.++.+. ++++.+++|+.+.++...... .+...........
T Consensus 151 ~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~------------~~~~~~~~~~~~~---------- 208 (252)
T PRK06077 151 LSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLF------------KVLGMSEKEFAEK---------- 208 (252)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhh------------hcccccHHHHHHh----------
Confidence 6899999999999999988773 789999999999876321000 0000000000000
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCc
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKG 317 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~ 317 (393)
......+++++|+|++++.+++.+.. .+++|++.++..
T Consensus 209 -----~~~~~~~~~~~dva~~~~~~~~~~~~-~g~~~~i~~g~~ 246 (252)
T PRK06077 209 -----FTLMGKILDPEEVAEFVAAILKIESI-TGQVFVLDSGES 246 (252)
T ss_pred -----cCcCCCCCCHHHHHHHHHHHhCcccc-CCCeEEecCCee
Confidence 01123589999999999999975433 347999988754
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=172.71 Aligned_cols=234 Identities=12% Similarity=0.048 Sum_probs=157.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
..++||||||+|+||++++++|+++|++|++++|.......... ++.....++.++.+|+++.+++.++++.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAA---EIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---HHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 34799999999999999999999999999999885432222222 2221234678999999999998877754
Q ss_pred CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||.... ..........++.|+.++..+++++... ..+++|++||...+.. ..
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~-----------~~ 149 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHS-----------QP 149 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccC-----------CC
Confidence 378999999986432 1123445667889999999999998653 2258999999765422 23
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+++.++.+ .+++++++|||.++++.....+...... .+.-...+.....+..
T Consensus 150 ~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------- 218 (258)
T PRK07890 150 KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGK----YGVTVEQIYAETAANS------- 218 (258)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccc----cCCCHHHHHHHHhhcC-------
Confidence 4678999999999999998865 4899999999999998532110000000 0000011111111111
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
....+.+++|++++++++++... ...++++.+.++
T Consensus 219 ---------~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg 254 (258)
T PRK07890 219 ---------DLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCG 254 (258)
T ss_pred ---------CccccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCc
Confidence 12246789999999999887422 223456666544
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=171.03 Aligned_cols=241 Identities=15% Similarity=0.109 Sum_probs=159.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|...... +...++.....++.++.+|++|.+++.+++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~---~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR---QAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999887543222 22223322234678899999999999888754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||....... .......+++|+.++.++++++. +.+ ..++|++||...+..
T Consensus 81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~----------- 149 (275)
T PRK05876 81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP----------- 149 (275)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC-----------
Confidence 268999999997543322 22344567899999999888874 333 468999999776532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++|+.+.++.... . ..+........+....
T Consensus 150 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~-~~~~~~~~~~~~~~~~ 213 (275)
T PRK05876 150 NAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN---------------S-ERIRGAACAQSSTTGS 213 (275)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc---------------h-hhhcCccccccccccc
Confidence 234678999999866666555543 58999999999987763211 0 0000000000000111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHH
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKA 330 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~ 330 (393)
.+ .....+++++++|+|++++.++... +.|.+.+ .....++.+...+.
T Consensus 214 ~~------~~~~~~~~~~~~dva~~~~~ai~~~-----~~~~~~~--~~~~~~~~~~~~~~ 261 (275)
T PRK05876 214 PG------PLPLQDDNLGVDDIAQLTADAILAN-----RLYVLPH--AASRASIRRRFERI 261 (275)
T ss_pred cc------cccccccCCCHHHHHHHHHHHHHcC-----CeEEecC--hhhHHHHHHHHHHH
Confidence 11 2334567899999999999999854 2454432 34444554444443
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=172.51 Aligned_cols=235 Identities=14% Similarity=0.061 Sum_probs=156.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++|+||||+|+||.+++++|+++|++|++++|+........+.+.... ....+.++.+|+++.+++.+++++ .+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY-GEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-CCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999885432222222222111 113588999999999998877754 47
Q ss_pred CcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeeccee-ecCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCAT-YGEPDKMPITESTPQK 194 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~v-yg~~~~~~~~E~~~~~ 194 (393)
+|+|||+||....... .......+++|+.++..+++++.. .+ ..++|++||... ++. .
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------~ 149 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------K 149 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------C
Confidence 8999999986543221 223455678999998877766643 44 358999998542 321 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc-eeEc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG-LKIR 270 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 270 (393)
...+|+.+|++.+.+++.++.+ .|+++.++|||.++++.... .+++.+.......... ....
T Consensus 150 ~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 215 (259)
T PRK12384 150 HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ--------------SLLPQYAKKLGIKPDEVEQYY 215 (259)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh--------------hhhHHHHHhcCCChHHHHHHH
Confidence 2468999999999988887753 79999999999988764210 1122111111000000 0000
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~ 317 (393)
. ++...+.+++++|++++++.++..... ..+++|++.+++.
T Consensus 216 ~------~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 216 I------DKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred H------HhCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 0 233456688999999999988774322 2457899987753
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=169.36 Aligned_cols=243 Identities=14% Similarity=0.094 Sum_probs=167.3
Q ss_pred cCCCCCCCCcCCCCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC
Q 016208 31 SLSPDSNSTKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
.++|...-+.......+.+|+||||||+|+||.+++++|+++|++|++++|....... .....+.....++.++.+|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl 105 (290)
T PRK06701 28 NPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDAN--ETKQRVEKEGVKCLLIPGDV 105 (290)
T ss_pred CcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHH--HHHHHHHhcCCeEEEEEccC
Confidence 4444444433333345566899999999999999999999999999998875422111 11112212224678899999
Q ss_pred CCHHHHHHHHhh-----CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeeccee
Q 016208 111 GDAKAVNKIFAE-----NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCAT 178 (393)
Q Consensus 111 ~~~~~~~~~~~~-----~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~v 178 (393)
.+.+++.+++++ .++|+|||+|+..... .........+++|+.++.++++++... ...++|++||...
T Consensus 106 ~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~ 185 (290)
T PRK06701 106 SDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITG 185 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence 999998887754 3799999999975321 112234568889999999999998753 2358999999887
Q ss_pred ecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHH
Q 016208 179 YGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGA 255 (393)
Q Consensus 179 yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
|..... ...|+.+|...+.+++.++.+ .|++++.++||.++.+.... .....
T Consensus 186 ~~~~~~-----------~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~--------------~~~~~ 240 (290)
T PRK06701 186 YEGNET-----------LIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPS--------------DFDEE 240 (290)
T ss_pred cCCCCC-----------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccc--------------ccCHH
Confidence 754322 357999999999999998876 48999999999998864211 11111
Q ss_pred HHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 256 CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
........ .....+.+++|+|++++.++.... ...+.++++.++.
T Consensus 241 ~~~~~~~~----------------~~~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 241 KVSQFGSN----------------TPMQRPGQPEELAPAYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred HHHHHHhc----------------CCcCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCCc
Confidence 11111111 112347889999999999888542 2234688886653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=172.74 Aligned_cols=230 Identities=17% Similarity=0.104 Sum_probs=152.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
++++|+||||+|+||++++++|+++|++|++++|.... .+.+. ..++.++.+|+.+.+++.++++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----l~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK----MEDLA-----SLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-----hCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999998874321 11111 13588999999999999888753
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.+ +..+++.+++.+.+++|++||...+... .
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-----------~ 141 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYT-----------P 141 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCC-----------C
Confidence 37999999999764322 233456678899888 4555666777777799999996543211 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCC-CcccccccchHHHHHHHhCCCCceeEc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPH-PELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+.+.++.+ .|++++++|||.+..+........... ............+...+..
T Consensus 142 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 213 (273)
T PRK06182 142 LGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRS-------- 213 (273)
T ss_pred CccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHH--------
Confidence 2457999999999988776643 689999999999987642100000000 0000000000001111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
......+.+++|+|++++.++....+. ..|+++.+
T Consensus 214 --------~~~~~~~~~~~~vA~~i~~~~~~~~~~--~~~~~g~~ 248 (273)
T PRK06182 214 --------TYGSGRLSDPSVIADAISKAVTARRPK--TRYAVGFG 248 (273)
T ss_pred --------hhccccCCCHHHHHHHHHHHHhCCCCC--ceeecCcc
Confidence 111234678999999999999865433 47877654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-20 Score=167.99 Aligned_cols=228 Identities=17% Similarity=0.099 Sum_probs=158.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++||||||+|+||.+++++|+++|++|++++|...........+. .....+.++.+|++|++++.+++++
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE---ALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999885432222222221 2234678899999999999766643
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhc-----CCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAH-----KVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||....... .......++.|+.++.++++++... +.+++|++||...+..... .
T Consensus 87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~-------~ 159 (259)
T PRK08213 87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP-------E 159 (259)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-------c
Confidence 368999999996532221 2233456789999999999987654 5679999999766543221 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+..+|+.+|+..|.+++.++++ .|+++.+++|+.+-.+... .+.+.+.+......+ +.
T Consensus 160 ~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~---------------~~~~~~~~~~~~~~~-~~- 222 (259)
T PRK08213 160 VMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTR---------------GTLERLGEDLLAHTP-LG- 222 (259)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchh---------------hhhHHHHHHHHhcCC-CC-
Confidence 124578999999999999998876 4799999999888665321 233333333333333 21
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
-+...+|+++++..++.... ...+..+++.++
T Consensus 223 --------------~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 223 --------------RLGDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred --------------CCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 23468999999888886432 224567777544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=168.97 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+|+|+||||+|+||+++++.|+++|++|++++|...........+..... ...+.++.+|+.|++++.+++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-SKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 348999999999999999999999999999998754333222222211111 13466779999999999888754
Q ss_pred CCCcEEEEcccccCc-------cCCccChHHHHHHHHHHHHHHH----HHHHhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYV-------GESTLEPLRYYHNITSNTLVIL----EAMAAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~-------~~~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+|+.... ..........+++|+.++..++ +.+++.+.+++|++||...+..... ...|..
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~~ 160 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF-EIYEGT 160 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc-hhcccc
Confidence 248999999975321 1112234556777876665554 4455556779999999665533221 222333
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .++++++++|+.++++.. ..+........+
T Consensus 161 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~-------------------~~~~~~~~~~~~--- 218 (256)
T PRK09186 161 SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP-------------------EAFLNAYKKCCN--- 218 (256)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC-------------------HHHHHHHHhcCC---
Confidence 3333457999999999998877765 589999999998876421 111222222111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+++++|+|++++.++..... ..+..+.+.++
T Consensus 219 -------------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 219 -------------GKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred -------------ccCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 12378999999999999975432 23467766555
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=169.88 Aligned_cols=240 Identities=15% Similarity=0.062 Sum_probs=158.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
..+.+++++||||+|+||++++++|+++|++|++++|...... +...++. ...++.++.+|++|.+++.++++.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ---NVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999987533222 2222221 124688999999999999887753
Q ss_pred ---CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeeccee-ecCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCAT-YGEPDKMPIT 188 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~v-yg~~~~~~~~ 188 (393)
.++|+|||+||..... ....+....+++|+.++.++++++.. .+..++|++||... ++..
T Consensus 90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------ 163 (280)
T PLN02253 90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGL------ 163 (280)
T ss_pred HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCC------
Confidence 3799999999975321 11234567899999999998887753 23357888887544 3221
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
....|+.+|...|.+.+.++.+ .|+++..++|+.+..+........... .......+........+
T Consensus 164 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 232 (280)
T PLN02253 164 ------GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDER-----TEDALAGFRAFAGKNAN 232 (280)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccc-----hhhhhhhhHHHhhcCCC
Confidence 1357999999999999998876 489999999999987632110000000 00011111111111111
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccH
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~ 320 (393)
+ ....++++|+++++++++.... ...++.+++.++...+.
T Consensus 233 ---l------------~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~~ 273 (280)
T PLN02253 233 ---L------------KGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFTCTN 273 (280)
T ss_pred ---C------------cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchhhcc
Confidence 0 0124789999999999887432 22347888876654433
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=166.46 Aligned_cols=225 Identities=16% Similarity=0.099 Sum_probs=157.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++|+||||+|+||++|++.|+++|++|++++|.......... ++.....++.++.+|+.+.+++.++++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAA---ALEAAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---HHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999998775332222222 2222234688999999999999887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||++|...... ........++.|+.++.++++.+... +..++|++||...+...
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 150 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA----------- 150 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC-----------
Confidence 47999999999754321 22234556789999999998887543 34599999996654322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...|.+++.++.+ .+++++.++||.+..+.... ..............
T Consensus 151 ~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--------------~~~~~~~~~~~~~~------ 210 (250)
T PRK12939 151 PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAY--------------VPADERHAYYLKGR------ 210 (250)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccc--------------cCChHHHHHHHhcC------
Confidence 12468999999999999887755 58999999999887664210 00001112222221
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
....+++++|++++++.++.... ...++.+++.++
T Consensus 211 ----------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 246 (250)
T PRK12939 211 ----------ALERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246 (250)
T ss_pred ----------CCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 23347899999999999987542 224578888665
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-20 Score=166.02 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=156.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
+.+++++||||+|+||.++++.|+++|++|++++|..... +.+... .+..++.+|+.+.+++.++++. .++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~----~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAAL----DRLAGE----TGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH----hCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 4457999999999999999999999999999998753221 111111 2467888999999999888864 358
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
|+|||+|+...... ...+....+..|+.++.++++++.+. + .+++|++||...+... .+.
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~~ 147 (245)
T PRK07060 79 DGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL-----------PDH 147 (245)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC-----------CCC
Confidence 99999999764322 12344556779999999999888653 2 3689999997665432 235
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...|.+++.++.+ .+++++.+||+.++++.....+. . ...........
T Consensus 148 ~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~-----------~--~~~~~~~~~~~--------- 205 (245)
T PRK07060 148 LAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWS-----------D--PQKSGPMLAAI--------- 205 (245)
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhcc-----------C--HHHHHHHHhcC---------
Confidence 68999999999999988765 48999999999999875321110 0 00111111111
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
....+++++|+++++..++..+. ...++.+++.++
T Consensus 206 -------~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 206 -------PLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred -------CCCCCCCHHHHHHHHHHHcCcccCCccCcEEeECCC
Confidence 12348999999999999987543 224578887655
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=164.02 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=154.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||||+||+++++.|+++|++|+++.|...... .....++.....++.++.+|+.+.+++.+++++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGA--EALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHH--HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4479999999999999999999999999988877443211 111122222235788899999999998887754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeeccee-ecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCAT-YGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~v-yg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ........+..|+.++.++++.+... +.+++|++||... ++..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~----------- 150 (248)
T PRK05557 82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP----------- 150 (248)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC-----------
Confidence 37899999999754322 12234556779999999998888643 5568999999643 3321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...|.+++.++.. .++++++++|+.+.++... ..............+
T Consensus 151 -~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~---------------~~~~~~~~~~~~~~~----- 209 (248)
T PRK05557 151 -GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTD---------------ALPEDVKEAILAQIP----- 209 (248)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccc---------------ccChHHHHHHHhcCC-----
Confidence 2568999999999888877654 5899999999988654311 112222222222211
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.+++|+++++..++.... ...++.|++.++
T Consensus 210 -----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 210 -----------LGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 1236789999999988876522 224579999765
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=166.92 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=155.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++++||||+|+||++|+++|+++|++|+++.|......... ..+. ....+.++.+|+.|++++.++++.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVA---AAIA-AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHH---HHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999999999987543222222 2221 234688999999999999888754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+|+...... ........+..|+.++.++.+.+ ++.+.+++|++||...+... .
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~-----------~ 148 (252)
T PRK06138 80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG-----------R 148 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC-----------C
Confidence 37999999999754322 22234556889999987666554 45667799999997554321 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+..+|+.+|...+.+++.++.+ .+++++++||+.++++.....+.. ...+..........
T Consensus 149 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~----------~~~~~~~~~~~~~~------- 211 (252)
T PRK06138 149 GRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFAR----------HADPEALREALRAR------- 211 (252)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhcc----------ccChHHHHHHHHhc-------
Confidence 3578999999999999998766 389999999999988742211000 00011111111110
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
.....+++++|++++++.++..+.. ..+..+.+.++
T Consensus 212 --------~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 212 --------HPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred --------CCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 0112378899999999999886442 23456766544
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=165.19 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=155.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+|++|||||+|+||.+++++|+++|++|+++.+..... ......++......+.++.+|++|.+++.+++++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDE--AEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 457999999999999999999999999998876643211 1112222222235688899999999998887754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ........+++|+.++.++++++... +.+++|++||...+... .
T Consensus 86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~-----------p 154 (258)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN-----------P 154 (258)
T ss_pred CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC-----------C
Confidence 35899999999753321 22345668889999999999887653 23578888875444221 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
....|+.+|...|.+.+.++.+. +++++.++||.++.... .....+ .......+
T Consensus 155 ~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~----------------~~~~~~-~~~~~~~~------- 210 (258)
T PRK09134 155 DFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGR----------------QSPEDF-ARQHAATP------- 210 (258)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcc----------------cChHHH-HHHHhcCC-------
Confidence 13589999999999999988763 48999999998865421 111111 11111111
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccH
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~ 320 (393)
.....+++|+|++++++++.+.. .++.|++.++..+++
T Consensus 211 ---------~~~~~~~~d~a~~~~~~~~~~~~-~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 211 ---------LGRGSTPEEIAAAVRYLLDAPSV-TGQMIAVDGGQHLAW 248 (258)
T ss_pred ---------CCCCcCHHHHHHHHHHHhcCCCc-CCCEEEECCCeeccc
Confidence 01246799999999999986543 357888877765544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=167.38 Aligned_cols=210 Identities=16% Similarity=0.125 Sum_probs=150.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
|++||||||+|+||.++++.|+++|++|++++|......... .++.....++.++.+|+.+.+++.++++. .
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~---~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLA---QELADHGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999988543222222 22222235788899999999998887754 2
Q ss_pred CCcEEEEcccccCccCCcc-----ChHHHHHHHHHHHHHHHHHHHh---cCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGESTL-----EPLRYYHNITSNTLVILEAMAA---HKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~-----~~~~~~~~n~~~~~~ll~~~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||......... .....++.|+.++.++++.+.. .+.+++|++||...+... .+
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 146 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGV-----------PT 146 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCC-----------CC
Confidence 7899999999764432222 2355688999999999998853 234689999997776432 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...|.+.+.++.+ .++++++++||.+..+.... ... ..+.+ .. .
T Consensus 147 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~-------------------~~~--~~~~~-~~--~- 201 (263)
T PRK06181 147 RSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR-------------------ALD--GDGKP-LG--K- 201 (263)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh-------------------hcc--ccccc-cc--c-
Confidence 578999999999998877654 58999999999987653210 000 00111 10 0
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANA 302 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~ 302 (393)
.+.....+++++|+|++++.+++..
T Consensus 202 -----~~~~~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 202 -----SPMQESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred -----ccccccCCCCHHHHHHHHHHHhhCC
Confidence 1222346899999999999999853
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=162.59 Aligned_cols=225 Identities=13% Similarity=0.111 Sum_probs=156.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..+++|||||+|+||++++++|+++|++|++++|.. +.. ....+.++++|+.+.+++.+++++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQ---EDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhh---cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999998754 001 124688899999999999988754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+|+...... ...+....+++|+.++..+++++.. .+..++|++||..... +.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~-----------~~ 142 (252)
T PRK08220 74 TGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV-----------PR 142 (252)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc-----------CC
Confidence 35899999999764322 2335566888999999999888753 4456899999965432 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+.+.++.+ .++++++++|+.++++.....+..... ...............
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------- 210 (252)
T PRK08220 143 IGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDG-----EQQVIAGFPEQFKLG------- 210 (252)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhh-----hhhhhhhHHHHHhhc-------
Confidence 34678999999999999888876 789999999999998853211000000 000000011111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
.....+++++|+|+++++++... ....++++.+.++
T Consensus 211 ---------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 211 ---------IPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247 (252)
T ss_pred ---------CCCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCC
Confidence 12345789999999999988643 2223456666554
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=175.31 Aligned_cols=264 Identities=18% Similarity=0.192 Sum_probs=182.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC---CeEEEEeCCCCCCchhhhhhhhhcC-------------CCCccEEEEccCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNMGAVKVLQELFP-------------QPGQLQFIYADLG 111 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~ 111 (393)
+.++|||||||||+|..|++.|+..- .+++.+-|........ +.++.... .-.++..+.||+.
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~-~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQ-ERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHH-HHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 44899999999999999999999762 3788888865544322 22221110 1257888999998
Q ss_pred CH------HHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCC--
Q 016208 112 DA------KAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEP-- 182 (393)
Q Consensus 112 ~~------~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~-- 182 (393)
++ .++.... ..+|+|||+||-..++ ........+|+.|++++++.|++. +.+-+||+||+.+....
T Consensus 90 ~~~LGis~~D~~~l~--~eV~ivih~AAtvrFd---e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLA--DEVNIVIHSAATVRFD---EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGH 164 (467)
T ss_pred CcccCCChHHHHHHH--hcCCEEEEeeeeeccc---hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccc
Confidence 66 4455444 7899999999987653 445667889999999999999988 57899999998876211
Q ss_pred -CCCCCC--C------------CC----------C--CCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCC
Q 016208 183 -DKMPIT--E------------ST----------P--QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPE 235 (393)
Q Consensus 183 -~~~~~~--E------------~~----------~--~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~ 235 (393)
...++. | +. . ....+.|.-+|+++|.++.+++ .+++++|+||+.|......
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccC
Confidence 111111 1 10 0 1135669999999999999975 6899999999999999877
Q ss_pred CCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC--CC--CcceEE
Q 016208 236 GRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK--PG--KVGIYN 311 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~--~~--~~~~yn 311 (393)
+..|+-+... .....++.... |.- -.+. .+.+...|+|.+|.++.+++.+.-... .. ...+||
T Consensus 243 P~pGWidn~~-----gp~g~i~g~gk-Gvl-r~~~------~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~ 309 (467)
T KOG1221|consen 243 PFPGWIDNLN-----GPDGVIIGYGK-GVL-RCFL------VDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYH 309 (467)
T ss_pred CCCCccccCC-----CCceEEEEecc-ceE-EEEE------EccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEE
Confidence 7666544322 11111111111 111 1111 267888999999999999997664211 11 125999
Q ss_pred ecCC--CcccHHHHHHHHHHHhC
Q 016208 312 VGTG--KGRSVKEFVEACKKATG 332 (393)
Q Consensus 312 i~~~--~~~s~~el~~~i~~~~g 332 (393)
++++ .++++.++.+...+.+.
T Consensus 310 ~tss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 310 LTSSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred ecccccCcccHHHHHHHHHHhcc
Confidence 9986 47999999999988765
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=163.51 Aligned_cols=222 Identities=19% Similarity=0.124 Sum_probs=153.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|+||++++++|+++|++|++++|...... +..+.+ ...+.++.+|+.+.+++.+++++
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~---~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS---KVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH---HHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999877432211 111221 24678899999999988766544
Q ss_pred -CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... ....+....+++|+.++.++++++... ...++|++||...+....
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~--------- 152 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEP--------- 152 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCC---------
Confidence 2589999999976431 122334578899999999999998632 235899999876553221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...|.+++.++.+. ++++.+++|+.+.++.... ..............+
T Consensus 153 --~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~--------------~~~~~~~~~~~~~~~----- 211 (255)
T PRK05717 153 --DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQ--------------RRAEPLSEADHAQHP----- 211 (255)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccc--------------ccchHHHHHHhhcCC-----
Confidence 24679999999999999988873 5899999999998874221 000111111111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.+++|++.++.+++.... ...++.+.+.++
T Consensus 212 -----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 246 (255)
T PRK05717 212 -----------AGRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGG 246 (255)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 1236789999999998886432 223467777544
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=165.19 Aligned_cols=229 Identities=15% Similarity=0.087 Sum_probs=157.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||.+++++|+++|++|++++|.... ....+....+.....++.++.+|+.+.+++.+++++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEE-EDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcch-hhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 344799999999999999999999999999987663221 111111111111234677899999999988877654
Q ss_pred -CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++||+||.... .....+....+++|+.++..+++++... .-.++|++||...+....
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~----------- 194 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP----------- 194 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC-----------
Confidence 368999999986421 1123455678899999999999888653 225899999987764322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+.+.++.+ .|+++.+++||.|.++..... ..............+
T Consensus 195 ~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~~------ 255 (294)
T PRK07985 195 HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG-------------GQTQDKIPQFGQQTP------ 255 (294)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCcccccccc-------------CCCHHHHHHHhccCC------
Confidence 2468999999999999988876 589999999999998742100 001111122222212
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+...+|+|+++++++.... ...+.++.+.++.
T Consensus 256 ----------~~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 256 ----------MKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_pred ----------CCCCCCHHHHHHHHHhhhChhcCCccccEEeeCCCe
Confidence 1235678999999999887532 2234677776553
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=161.57 Aligned_cols=224 Identities=17% Similarity=0.112 Sum_probs=156.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++++||||+|+||+++++.|.++|++|++++|... ....+..........++.++.+|+.+.+++.++++. .+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999988543 212222222222234688999999999998887754 36
Q ss_pred CcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||+||..... .........++.|+.++.++.+ .+++.+.+++|++||...+.... ..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~-----------~~ 149 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQF-----------GQ 149 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCC-----------CC
Confidence 99999999975322 1233455677899999888754 44555667999999976664322 24
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|.+.+.+++.++.+ .++++++++|+.+.++... ..............+
T Consensus 150 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~---------------~~~~~~~~~~~~~~~-------- 206 (245)
T PRK12824 150 TNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVE---------------QMGPEVLQSIVNQIP-------- 206 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchh---------------hcCHHHHHHHHhcCC--------
Confidence 58999999999988887654 5899999999999876421 111222222222222
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
...+..++|+++++..++... ..-.++.+++.++..
T Consensus 207 --------~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 207 --------MKRLGTPEEIAAAVAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred --------CCCCCCHHHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 122557899999998888642 222457998987753
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=163.59 Aligned_cols=223 Identities=18% Similarity=0.195 Sum_probs=151.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++++||||+|+||.+++++|+++|+.|+++.+... .........+......+.++.+|+++.+++.++++. ..
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNR--DAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH--HHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 57999999999999999999999999887654322 111122222222234577899999999999888754 36
Q ss_pred CcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhcC-------CcEEEEeeccee-ecCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAHK-------VKTLIYSSTCAT-YGEPDKMPITEST 191 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~~-------~~~~V~~SS~~v-yg~~~~~~~~E~~ 191 (393)
+|+|||+|+...... ...+....+++|+.++.++++.+...- -.++|++||... ++...
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 152 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG-------- 152 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC--------
Confidence 899999999753221 122344678899999999888876431 236999999654 33211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
....|+.+|...|.+++.++.+ .|++++++||+.++++.... ...+..........| +.
T Consensus 153 ---~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~--------------~~~~~~~~~~~~~~p-~~ 214 (248)
T PRK06123 153 ---EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHAS--------------GGEPGRVDRVKAGIP-MG 214 (248)
T ss_pred ---CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhc--------------cCCHHHHHHHHhcCC-CC
Confidence 1236999999999999888776 48999999999999984221 111222223333323 21
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
. +.+++|++++++.++.... ...++.|++.++
T Consensus 215 ~---------------~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 215 R---------------GGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred C---------------CcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 1 2468999999999887532 224578988654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=161.22 Aligned_cols=208 Identities=15% Similarity=0.071 Sum_probs=144.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-CCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-AFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~ 127 (393)
||+|+||||+|+||+++++.|+++ ++|++++|..... +.+.+. ..+++++.+|+.|.+++.+++... ++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~----~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL----DELAAE---LPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH----HHHHHH---hccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 579999999999999999999999 9999998853221 111111 136889999999999999988542 6999
Q ss_pred EEEcccccCccCC----ccChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 128 VMHFAAVAYVGES----TLEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 128 Vi~~A~~~~~~~~----~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
|||++|....... .......++.|+.+ +.++++.+++.+ +++|++||...++... +..+|
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~~~-----------~~~~y 142 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-GHVVFINSGAGLRANP-----------GWGSY 142 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEcchHhcCcCC-----------CCchH
Confidence 9999997543211 12234457788887 455555555544 5899999977664322 35689
Q ss_pred HHHHHHHHHHHHHHHhh-CC-CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 200 GKAKKMSEDIIIDFSKT-TN-MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~-~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
+.+|...|.+++.++.. .+ +++..++|+.+.++... .+... .+.
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~-------------------~~~~~--~~~------------- 188 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR-------------------GLVAQ--EGG------------- 188 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh-------------------hhhhh--hcc-------------
Confidence 99999999988887664 34 88999998876654211 00000 000
Q ss_pred CCccccccccHHHHHHHHHHHHhcCCCCCcceEEec
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVG 313 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~ 313 (393)
......+++++|++++++.+++.+... .+|++.
T Consensus 189 -~~~~~~~~~~~dva~~~~~~l~~~~~~--~~~~~~ 221 (227)
T PRK08219 189 -EYDPERYLRPETVAKAVRFAVDAPPDA--HITEVV 221 (227)
T ss_pred -ccCCCCCCCHHHHHHHHHHHHcCCCCC--ccceEE
Confidence 011245799999999999999875433 577764
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=161.60 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=154.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++|+||||+|+||++++++|.++|++|++++|...... ...+.++.+|+.+.+++.++++.
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~------------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDL------------PEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhc------------CCceeEEecCCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999988543211 24678899999999988766543
Q ss_pred -CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||..... ....+....+++|+.++.++++.+ ++.+..++|++||...+...
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 145 (260)
T PRK06523 75 LGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL--------- 145 (260)
T ss_pred cCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC---------
Confidence 3689999999964211 123345667889999987775554 44555689999997654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+............ ...........+......++
T Consensus 146 -~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p 220 (260)
T PRK06523 146 -PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEA----AGTDYEGAKQIIMDSLGGIP 220 (260)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhh----cCCCHHHHHHHHHHHhccCc
Confidence 124678999999999999888765 5899999999999887421000000000 00000011111110000011
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
...+..++|+++++.+++... ....++.+.+.++...|
T Consensus 221 -------------~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 221 -------------LGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred -------------cCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 122557899999999988743 22335788887665443
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=162.04 Aligned_cols=224 Identities=16% Similarity=0.169 Sum_probs=148.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
|++|+||||+|+||.+++++|+++|++|+++.+... ....+...++.....++.++.+|+.|++++.++++. .
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 78 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNL--HAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDE 78 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCh--HHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999987532222 222222222222234678899999999999888764 3
Q ss_pred CCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc-------CCcEEEEeecceeecCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH-------KVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
++|+|||+|+...... ...+....+++|+.++..+++.+... +..++|++||...+...+
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~-------- 150 (247)
T PRK09730 79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAP-------- 150 (247)
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCC--------
Confidence 6899999999652211 11233467889999998777665432 124699999975542211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.....|+.+|...|.+++.++.+ .+++++++||+.+++|..... . .+..........| +.
T Consensus 151 --~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~-------------~-~~~~~~~~~~~~~-~~ 213 (247)
T PRK09730 151 --GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASG-------------G-EPGRVDRVKSNIP-MQ 213 (247)
T ss_pred --CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccC-------------C-CHHHHHHHHhcCC-CC
Confidence 11246999999999998877654 589999999999999853210 1 1112222222222 11
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGT 314 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~ 314 (393)
...+++|+++++.+++.... ...+..|++.+
T Consensus 214 ---------------~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 245 (247)
T PRK09730 214 ---------------RGGQPEEVAQAIVWLLSDKASYVTGSFIDLAG 245 (247)
T ss_pred ---------------CCcCHHHHHHHHHhhcChhhcCccCcEEecCC
Confidence 12368999999998887432 22345776654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=159.88 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=155.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++++|+||||+|+||.+++++|+++|++|++++|... ....+.+... ...+.++.+|+++.+++.++++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL---GRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999987431 2222223222 34688999999999999877654
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||....... .......+++|+.++.++++++.. .+ ..++|++||...+....
T Consensus 78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------- 148 (248)
T TIGR01832 78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI--------- 148 (248)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC---------
Confidence 369999999997643221 234455788999999888888753 33 45899999987764322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+++.++.+ .|+++++++||.+..+..... ..............|
T Consensus 149 --~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 209 (248)
T TIGR01832 149 --RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQAL-------------RADEDRNAAILERIP---- 209 (248)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcc-------------ccChHHHHHHHhcCC----
Confidence 2457999999999999998887 489999999999987632100 000001111111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGT 314 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~ 314 (393)
...+++.+|+|+++++++..... ..+.++.+.+
T Consensus 210 ------------~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dg 243 (248)
T TIGR01832 210 ------------AGRWGTPDDIGGPAVFLASSASDYVNGYTLAVDG 243 (248)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCccccCcCCcEEEeCC
Confidence 23578999999999999875332 2334555533
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=171.46 Aligned_cols=184 Identities=19% Similarity=0.171 Sum_probs=133.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|+||.+++++|+++|++|++++|........ ..++......+.++.+|+.+.+++.++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAA---AQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHhhccCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999998754322222 222212234688999999999999888754
Q ss_pred -CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHh----cC--CcEEEEeecceeecCCCC----CC
Q 016208 123 -NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAA----HK--VKTLIYSSTCATYGEPDK----MP 186 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~~V~~SS~~vyg~~~~----~~ 186 (393)
.++|+|||+||+.... .........+++|+.++.++++++.. .+ ..|+|++||...+..... .+
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~ 160 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIP 160 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCC
Confidence 3599999999975321 12234567889999999888777653 22 259999999776532100 00
Q ss_pred --------------------CCCCCCCCCCChHHHHHHHHHHHHHHHHhhC----CCcEEEEeeccccCCC
Q 016208 187 --------------------ITESTPQKPINPYGKAKKMSEDIIIDFSKTT----NMAVMILRYFNVIGSD 233 (393)
Q Consensus 187 --------------------~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~ 233 (393)
..+..+..|...|+.||++.+.+.+.++++. |++++++|||.|++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 161 APADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 0112345567899999999988888887763 7999999999998753
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-19 Score=159.59 Aligned_cols=227 Identities=14% Similarity=0.095 Sum_probs=158.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||.+++++|.++|++|++++|...........+.. ...++.++.+|+++.+++.++++.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999988754332222222221 234678899999999998877654
Q ss_pred -CCCcEEEEcccccCccCC---ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES---TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||....... .......++.|+.++.++++.+. +.+..++|++||..... +..
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~ 154 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-----------KNI 154 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC-----------CCC
Confidence 368999999997543222 23445568899999999999886 33445899999965432 122
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|.+.+.+++.++.+ .++++.++.||.+.-+.... ...+.......+..+
T Consensus 155 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~--------------~~~~~~~~~~~~~~~------ 214 (255)
T PRK06113 155 NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS--------------VITPEIEQKMLQHTP------ 214 (255)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc--------------ccCHHHHHHHHhcCC------
Confidence 4568999999999999998765 57999999999987653110 111222222222222
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+..++|+++++..++.... .-.++++++.++..
T Consensus 215 ----------~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 215 ----------IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_pred ----------CCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcc
Confidence 1225688999999999887432 22457888877643
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=165.16 Aligned_cols=231 Identities=17% Similarity=0.137 Sum_probs=156.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+..++||||||+|+||.+++++|+++|++|++++|..... ... .++.....++.++.+|+.+.+++.+++++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFA---EELRALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHH---HHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 34558999999999999999999999999999998754332 222 22222235688999999999999887754
Q ss_pred --CCCcEEEEcccccCccC---CccChHHHHHHHHHHHHHHHHHHHh---cCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE---STLEPLRYYHNITSNTLVILEAMAA---HKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....++.|+.++.++.+.+.. .+.+++|++||...+... .
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-----------~ 148 (258)
T PRK08628 80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQ-----------G 148 (258)
T ss_pred hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCC-----------C
Confidence 37899999999643221 1133455778999998888887753 234689999996665321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...|.+++.++.+ .+++++.++||.++++......... .-.........+..+
T Consensus 149 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~---------~~~~~~~~~~~~~~~------ 213 (258)
T PRK08628 149 GTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATF---------DDPEAKLAAITAKIP------ 213 (258)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhc---------cCHHHHHHHHHhcCC------
Confidence 3578999999999999998764 5899999999999987421000000 000001111111111
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
.+ ..++.++|+++++++++.... ...+..|.+.++
T Consensus 214 ------~~---~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 249 (258)
T PRK08628 214 ------LG---HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGG 249 (258)
T ss_pred ------cc---ccCCCHHHHHHHHHHHhChhhccccCceEEecCC
Confidence 01 136789999999999887542 223467777544
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-19 Score=161.08 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=129.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++|+||||||+||++++++|.++|++|++++|...... . ..+++++.+|+.|++++.++++. .
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-------P----IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------c----cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999988532211 0 24788999999999999988864 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.+|+|||+||...... ...+....+++|+.++.++++++ ++.+.+++|++||...+...+ .
T Consensus 73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-----------~ 141 (270)
T PRK06179 73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAP-----------Y 141 (270)
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCC-----------C
Confidence 6899999999764322 12345668889999988888774 556778999999976653221 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
...|+.+|...|.+++.++.+ .|+++++++|+.+.++.
T Consensus 142 ~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 142 MALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 568999999999998887654 69999999999998874
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=160.19 Aligned_cols=222 Identities=14% Similarity=0.135 Sum_probs=155.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
..++++||||+|+||.++++.|+++|++|++++|.........+.++ ....++.++.+|+.+.+++.++++.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG---ALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34799999999999999999999999999998875432222222222 2235678899999999988877654
Q ss_pred CCCcEEEEcccccCcc-------------CCccChHHHHHHHHHHHHHHHHHHH----hc-CCcEEEEeecceeecCCCC
Q 016208 123 NAFDAVMHFAAVAYVG-------------ESTLEPLRYYHNITSNTLVILEAMA----AH-KVKTLIYSSTCATYGEPDK 184 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~-------------~~~~~~~~~~~~n~~~~~~ll~~~~----~~-~~~~~V~~SS~~vyg~~~~ 184 (393)
.++|+|||+||..... .........++.|+.++..+.+.+. +. .-.++|++||...|+..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~-- 158 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM-- 158 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC--
Confidence 3589999999964321 1122344567789988887665443 22 23479999997766432
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
+...|+.+|...|.+++.++.+ .+++++.++|+.+.++... ...+.......
T Consensus 159 ----------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~---------------~~~~~~~~~~~ 213 (253)
T PRK08217 159 ----------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTA---------------AMKPEALERLE 213 (253)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc---------------ccCHHHHHHHH
Confidence 3578999999999998888765 6899999999999876422 22233333333
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK 316 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~ 316 (393)
...+ ...+.+++|+++++..++.... ..+++|+++++.
T Consensus 214 ~~~~----------------~~~~~~~~~~a~~~~~l~~~~~-~~g~~~~~~gg~ 251 (253)
T PRK08217 214 KMIP----------------VGRLGEPEEIAHTVRFIIENDY-VTGRVLEIDGGL 251 (253)
T ss_pred hcCC----------------cCCCcCHHHHHHHHHHHHcCCC-cCCcEEEeCCCc
Confidence 3222 2235689999999999887533 345799997653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=161.93 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=129.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.|++++||||+|+||.+++++|+++|++|++++|+..........+. ....++.++.+|+++.+++..+++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR---STGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999885433222222222 2235788899999999998877754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.++.++++.+ .+.+.+++|++||...++.. .
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-----------~ 150 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF-----------P 150 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC-----------C
Confidence 36999999999754322 12344556789999888777665 44456789999998776432 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+..+|+.+|...+.+.+.++.+ .|++++++|||.+-.+
T Consensus 151 ~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~ 191 (241)
T PRK07454 151 QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTP 191 (241)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCC
Confidence 3578999999999998877644 5899999999998765
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=158.81 Aligned_cols=166 Identities=13% Similarity=0.032 Sum_probs=129.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-C
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-A 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~ 124 (393)
...++|+||||+|+||++++++|+++|+ +|++++|....... ...++.++.+|+.+.+++.++++.. .
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----------LGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----------cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 3457999999999999999999999998 99999885432211 1357889999999999999888543 5
Q ss_pred CcEEEEccccc-Ccc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVA-YVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~-~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+||.. ... ....+....+++|+.++.++++++. ..+.+++|++||...+.. ..+
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~-----------~~~ 142 (238)
T PRK08264 74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVN-----------FPN 142 (238)
T ss_pred CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccC-----------CCC
Confidence 89999999973 221 1233445678899999999988865 345678999999776543 223
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
...|+.+|...|.+.+.++.+ .+++++++||+.+.++.
T Consensus 143 ~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 143 LGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 578999999999999888765 48999999999997763
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-19 Score=157.25 Aligned_cols=219 Identities=17% Similarity=0.163 Sum_probs=152.6
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CCCc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NAFD 126 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~d 126 (393)
|+|||++|+||++++++|+++|++|++++|..... .......+......+.++.+|+++.+++.+++.. ..+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEG--AEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999999999999998754221 1111122222224578999999999998887754 3689
Q ss_pred EEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecce-eecCCCCCCCCCCCCCCCCC
Q 016208 127 AVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCA-TYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 127 ~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~p~~ 197 (393)
+|||+||..... .........++.|+.++.++++.+.. .+.+++|++||.. ++|.. +..
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~------------~~~ 146 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA------------GQA 146 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC------------CCc
Confidence 999999975321 12234566788999999999998865 3456999999964 44321 246
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...+.+++.++.+ .|++++++||+.+.++... ..............+
T Consensus 147 ~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~---------------~~~~~~~~~~~~~~~--------- 202 (239)
T TIGR01830 147 NYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTD---------------KLSEKVKKKILSQIP--------- 202 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhh---------------hcChHHHHHHHhcCC---------
Confidence 8999999999988887665 6899999999988665211 111222222222222
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
..-+.+++|++++++.++.... ...+++||++++
T Consensus 203 -------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 203 -------LGRFGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred -------cCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 1125689999999998885432 234579999654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-19 Score=159.00 Aligned_cols=211 Identities=19% Similarity=0.188 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|... ...+..+++ ...+.++.+|+.+.+++..+++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPA---SLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999877432 111222222 24678899999999887765542
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeec-ceeecCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSST-CATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS-~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|+|||+||...... ........+++|+.++.++++++... ...++|++|| .+.|+.. +
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~------------~ 146 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMP------------N 146 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCC------------C
Confidence 36899999999754322 22345668899999999999999742 2246777776 4444321 3
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
..+|+.+|...|.+++.++.+ .|++++++||+.+++|..... +.. ......+........+ +.
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~-~~~--------~~~~~~~~~~~~~~~~-~~---- 212 (249)
T PRK06500 147 SSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKL-GLP--------EATLDAVAAQIQALVP-LG---- 212 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhh-ccC--------ccchHHHHHHHHhcCC-CC----
Confidence 578999999999999888765 489999999999998732100 000 0122223333333322 11
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALAN 301 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~ 301 (393)
-+..++|+++++.+++..
T Consensus 213 -----------~~~~~~~va~~~~~l~~~ 230 (249)
T PRK06500 213 -----------RFGTPEEIAKAVLYLASD 230 (249)
T ss_pred -----------CCcCHHHHHHHHHHHcCc
Confidence 145789999999998864
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-19 Score=158.44 Aligned_cols=221 Identities=15% Similarity=0.102 Sum_probs=150.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+++++++||||+|+||++++++|+++|+.|++.+|.... ..+..... ..++.++.+|+.+.+++.+++++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEK---LEALAAEL---GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999988887664322 11111121 24678899999999998887643
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+.+++|++||...+...+
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 147 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP---------- 147 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC----------
Confidence 46999999999754221 2234566788999998888877642 3567899999965442221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+++.++.+ .++++++++|+.+..+... ..............+
T Consensus 148 -~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~---------------~~~~~~~~~~~~~~~----- 206 (245)
T PRK12936 148 -GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTG---------------KLNDKQKEAIMGAIP----- 206 (245)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhc---------------ccChHHHHHHhcCCC-----
Confidence 1457999999888888777655 5899999999987654211 111111111111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.+.+|+++++..++.... ...++.+++.++
T Consensus 207 -----------~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 207 -----------MKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 1235679999999988876432 224578988765
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=158.78 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=130.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||.+++++|+++|++|++++|.......... ++.....++.++.+|+.+++++.++++.
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAE---EVEAYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HHHHhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 344789999999999999999999999999999886433222222 2222234788899999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....++.|+.++.++++.+. +.+.+++|++||...+...
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~----------- 150 (239)
T PRK07666 82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA----------- 150 (239)
T ss_pred cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC-----------
Confidence 37999999999754322 122345678899999988888775 3456789999996655332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+...|+.+|.+.+.+++.++.+ .|++++++|||.+..+
T Consensus 151 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~ 192 (239)
T PRK07666 151 AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATD 192 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCc
Confidence 23567999999999998887654 5899999999999876
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=162.06 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=127.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+|+|+||||+|+||+++++.|+++|++|++++|..... .+...++... .++.++.+|+++.+++.+++++ .
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDAL---QAFAARLPKA-ARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhcccC-CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999998853221 1222222111 2788999999999999887654 2
Q ss_pred CCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.+|+|||+||...... ........+++|+.++.++++ .+++.+.+++|++||...+... .
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~-----------~ 146 (257)
T PRK07024 78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL-----------P 146 (257)
T ss_pred CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC-----------C
Confidence 4899999999754221 123456688899999888766 5556666799999986554221 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...+.+.+.++.+ .|++++++||+.+.++
T Consensus 147 ~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 187 (257)
T PRK07024 147 GAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTP 187 (257)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCc
Confidence 2467999999999999887643 6899999999999876
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=155.23 Aligned_cols=214 Identities=15% Similarity=0.118 Sum_probs=149.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~ 124 (393)
.++|+||||+|+||.+++++|+++|++|++++|..... ....++.+|+.+.+++.+++++ .+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 68 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------------FPGELFACDLADIEQTAATLAQINEIHP 68 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------------cCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999998854321 1235788999999988777643 37
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||+||...... ...+....++.|+.++.++.+++ ++.+.+++|++||...|+.. ..
T Consensus 69 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 136 (234)
T PRK07577 69 VDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL------------DR 136 (234)
T ss_pred CcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC------------Cc
Confidence 899999999764432 12344557788888877776554 44567799999998766432 24
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...|.+++.++.+ .|++++++|||.+..+..... . ..............+
T Consensus 137 ~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~-~-----------~~~~~~~~~~~~~~~-------- 196 (234)
T PRK07577 137 TSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQT-R-----------PVGSEEEKRVLASIP-------- 196 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccc-c-----------ccchhHHHHHhhcCC--------
Confidence 68999999999998887654 589999999999987642100 0 000111111211111
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+...+|++++++.++..+. ...+..+.+.++.
T Consensus 197 --------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 197 --------MRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGGG 232 (234)
T ss_pred --------CCCCcCHHHHHHHHHHHhCcccCCccceEEEecCCc
Confidence 1114478999999999887542 2234677776543
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=161.25 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=152.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++++||||+|+||.++++.|+++|++|+++.+..... ....+...++......+.++.+|+++++++.++++.
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999999977776543322 222222222222234688899999999999887764
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|+|||+||..... ....+....+++|+.++..+++++... ...++|+++|....... ..
T Consensus 87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~-----------~~ 155 (257)
T PRK12744 87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT-----------PF 155 (257)
T ss_pred hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC-----------CC
Confidence 3799999999974322 123345667889999999999888653 12356665332222111 12
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|.+.|.+.+.++.+ .|+++++++||.+..+...+.... .... ........
T Consensus 156 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~----------~~~~-~~~~~~~~--------- 215 (257)
T PRK12744 156 YSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGA----------EAVA-YHKTAAAL--------- 215 (257)
T ss_pred cccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccccc----------chhh-cccccccc---------
Confidence 468999999999999999877 379999999999976531110000 0000 00000000
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK 316 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~ 316 (393)
.......+.+++|++.++.++++......++++++.++.
T Consensus 216 -----~~~~~~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg~ 254 (257)
T PRK12744 216 -----SPFSKTGLTDIEDIVPFIRFLVTDGWWITGQTILINGGY 254 (257)
T ss_pred -----cccccCCCCCHHHHHHHHHHhhcccceeecceEeecCCc
Confidence 111122478899999999999985322235788887654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=158.33 Aligned_cols=223 Identities=16% Similarity=0.134 Sum_probs=156.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++||||||+|+||.+++++|+++|++|++++|.... . +...++. ...+.++.+|+.+++++.+++++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~-~---~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV-A---EVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH-H---HHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999885421 1 1112221 24567899999999998887754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||....... ..+....+++|+.++.++++++.. .+.+++|++||.......
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 155 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL----------- 155 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC-----------
Confidence 368999999997643221 223455788999999999888764 356799999996543221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...+.+.+.++.+ .|+++..++||.+..+.... .+............|
T Consensus 156 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~--------------~~~~~~~~~~~~~~~----- 216 (255)
T PRK06841 156 ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKK--------------AWAGEKGERAKKLIP----- 216 (255)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccc--------------ccchhHHHHHHhcCC-----
Confidence 12468999999999999888776 58999999999987653210 010111111222211
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~ 316 (393)
...+.+++|++++++.++..... -.++++.+.++.
T Consensus 217 -----------~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 217 -----------AGRFAYPEEIAAAALFLASDAAAMITGENLVIDGGY 252 (255)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 23477999999999999875422 245677776554
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=157.30 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=153.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..|++|+||||||+||.++++.|+++|++|+++ +|...........+. .....+.++.+|+.+++++.++++.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK---EEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 446799999999999999999999999999998 764332222222222 1234688999999999998887753
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||++|...... ........++.|+.++.++++.+.. .+.+++|++||...+....
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~--------- 150 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS--------- 150 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC---------
Confidence 27999999999763321 1223456788999998888777653 4556899999966653322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+++.++.+ .|++++++||+.+..+... ...+..........+
T Consensus 151 --~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~---------------~~~~~~~~~~~~~~~---- 209 (247)
T PRK05565 151 --CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWS---------------SFSEEDKEGLAEEIP---- 209 (247)
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcccc---------------ccChHHHHHHHhcCC----
Confidence 2457999999998888877665 5899999999998765321 111111111111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|++++++.++.... .-.++.+++..+
T Consensus 210 ------------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 210 ------------LGRLGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred ------------CCCCCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 1235688999999999887533 224567777655
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=159.04 Aligned_cols=226 Identities=15% Similarity=0.092 Sum_probs=154.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||.+++++|+++|++|++++|.........+.+. ....++.++.+|+++.+++.++++.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR---AAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999885432222222222 2234688899999999999877754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA-----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+.+++|++||..... +
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~ 153 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL-----------A 153 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----------C
Confidence 37999999998643321 2234566788999999999999864 3456899999954321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
..+...|+.+|...+.+++.++.+ .+++++.++||.+..+.... . .-...+........+
T Consensus 154 ~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~-~------------~~~~~~~~~~~~~~~----- 215 (263)
T PRK07814 154 GRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEV-V------------AANDELRAPMEKATP----- 215 (263)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhh-c------------cCCHHHHHHHHhcCC-----
Confidence 234678999999999999988876 35799999999886542110 0 000111222222111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+..++|+++++++++... ....++.+.+.++
T Consensus 216 -----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 216 -----------LRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 122457899999999988743 2223456666544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=160.94 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=126.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh------
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------ 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------ 122 (393)
+++|+||||+|+||.+++++|.++|++|++++|..... +.+.. .+++++.+|+.|.+++.+++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~----~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDV----AALEA-----EGLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHH-----CCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999998853221 12221 3678899999999988877654
Q ss_pred CCCcEEEEcccccCccCCc----cChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
..+|+|||+||........ ......+++|+.+ +..+++.+++.+.+++|++||...+. +..
T Consensus 75 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~-----------~~~ 143 (277)
T PRK05993 75 GRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV-----------PMK 143 (277)
T ss_pred CCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC-----------CCC
Confidence 2689999999976443222 2334578899988 66777778777778999999965442 223
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+...|+.+|+..|.+.+.++.+ .|+++++++||.+-.+
T Consensus 144 ~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 144 YRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 4678999999999998887643 6899999999988654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=157.26 Aligned_cols=215 Identities=17% Similarity=0.061 Sum_probs=153.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++|+||||+|+||.+++++|+++|++|++++|..... .+...++... .++.++.+|+.+.+++.+++++ .
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~---~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKEL---EEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHH---HHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999998754222 2222222221 5688999999999998887754 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
++|+|||+++...... ........++.|+.++..+++++... +.+++|++||...+.. ..+.
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~~ 150 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNF-----------FAGG 150 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccC-----------CCCC
Confidence 7999999998754321 12234467889999999888887642 4568999999655422 2235
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|+..+.+.+.++.+ .|++++++||+.+..+.... .+
T Consensus 151 ~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~---------------------------~~-------- 195 (237)
T PRK07326 151 AAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH---------------------------TP-------- 195 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc---------------------------cc--------
Confidence 68999999999888887544 68999999999987652110 00
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
.......+..+|++++++.++..+.......+.+.++.+.
T Consensus 196 -----~~~~~~~~~~~d~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 235 (237)
T PRK07326 196 -----SEKDAWKIQPEDIAQLVLDLLKMPPRTLPSKIEVRPSRPP 235 (237)
T ss_pred -----chhhhccCCHHHHHHHHHHHHhCCccccccceEEecCCCC
Confidence 0000013678999999999998776554456666555443
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=155.18 Aligned_cols=223 Identities=15% Similarity=0.116 Sum_probs=151.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
.+.++||||+|+||++++++|+++|++|+++.+.. .....+.+.++......+..+.+|+.+.+++.+++++ .
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPN--SPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCC--hHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999998864322 1222222333222234577889999999998887754 3
Q ss_pred CCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||..... ....+....+++|+.++..+++. +.+.+.+++|++||...... ..+
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~ 149 (246)
T PRK12938 81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG-----------QFG 149 (246)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCC-----------CCC
Confidence 799999999975321 12334566788999986665554 44556679999999644311 124
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .++++.+++|+.+..+... ...+..........+
T Consensus 150 ~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~---------------~~~~~~~~~~~~~~~------- 207 (246)
T PRK12938 150 QTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK---------------AIRPDVLEKIVATIP------- 207 (246)
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhh---------------hcChHHHHHHHhcCC-------
Confidence 678999999999888877665 6899999999999876421 111222233322222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++++.+++... ....++.+.+.++
T Consensus 208 ---------~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 208 ---------VRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred ---------ccCCcCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 123557899999999888653 2234567777544
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=156.26 Aligned_cols=224 Identities=21% Similarity=0.202 Sum_probs=154.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
.++|+||||+|+||+++++.|.++|++|+++.|.... ...+..+++.....++.++.+|+.+.+++.+++++ .
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAA--AADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHH--HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999999999887664322 11122222222235788999999999999888764 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
++|+|||+||...... ........+++|+.++.++++.+.+. ...++|++||...+.. ..+..
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~~~ 151 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALP-----------LPGYG 151 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCC-----------CCCCc
Confidence 7999999999754321 22334567889999999999888654 2358999998655422 22467
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...+.+++.++.+ .++++++++|+.+-.+.... .........+....|
T Consensus 152 ~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~--------------~~~~~~~~~~~~~~~--------- 208 (245)
T PRK12937 152 PYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFN--------------GKSAEQIDQLAGLAP--------- 208 (245)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcc--------------cCCHHHHHHHHhcCC---------
Confidence 8999999999999887765 57999999999876542110 111122233333222
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+.+++|+++++.+++..+.. ..+..+++.++
T Consensus 209 -------~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 209 -------LERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred -------CCCCCCHHHHHHHHHHHcCccccCccccEEEeCCC
Confidence 11245789999999998875432 23568877543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=156.53 Aligned_cols=227 Identities=14% Similarity=0.047 Sum_probs=156.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++|+||||+|+||++++++|+++|++|++++|...... +...++.....++.++.+|+.+.+++.+++++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLE---AAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHH---HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999988542222 22222222234688999999999998877754
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||....... ..+....++.|+.++.++++.+. +.+.+++|++||...+....
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~--------- 155 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARA--------- 155 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCC---------
Confidence 367999999997543221 22344578899999888886664 35667999999965542211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+++.++.+ .++++..++|+.+.++..... .....+........+
T Consensus 156 --~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 216 (256)
T PRK06124 156 --GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAM-------------AADPAVGPWLAQRTP---- 216 (256)
T ss_pred --CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhh-------------ccChHHHHHHHhcCC----
Confidence 2468999999999998887765 489999999999998742210 001111222222111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+++++|++++++.++..+.. ..|+.+.+.++
T Consensus 217 ------------~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg 251 (256)
T PRK06124 217 ------------LGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGG 251 (256)
T ss_pred ------------CCCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCC
Confidence 12378999999999999886432 23455555433
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=161.32 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=125.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+|+||||+|+||.+++++|+++|++|++++|...... .....+ ..++.++.+|+.+.+++.++++. .+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQ---ELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999988532211 111111 24688899999999998887753 37
Q ss_pred CcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+||.... . .........+++|+.++..+++. +.+.+.+++|++||...+. +..+
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~ 143 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW-----------PYAG 143 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC-----------CCCC
Confidence 9999999996421 1 12234456788999986555554 4556677999999965431 2234
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
...|+.+|...|.+.+.++.+ .++++.+++||.+.|+.
T Consensus 144 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~ 184 (248)
T PRK10538 144 GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTE 184 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccc
Confidence 678999999999999988765 57999999999998763
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=157.12 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=155.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||.+++++|+++|++|++++|. .......+.+... ..++.++.+|+.+.+++.+++++
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE---GRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999885 3222222223221 34688999999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||...... ...+....+++|+.+...+++++. +.+.+++|++||...+....
T Consensus 89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 158 (258)
T PRK06935 89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGK---------- 158 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCC----------
Confidence 26899999999754322 223445677889988777665554 44567899999977663322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+.+.++++ .|+++++++||.+..+..... ..............+
T Consensus 159 -~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~~----- 219 (258)
T PRK06935 159 -FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPI-------------RADKNRNDEILKRIP----- 219 (258)
T ss_pred -CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhc-------------ccChHHHHHHHhcCC-----
Confidence 2458999999999999998876 589999999999876632100 000111111211111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|++.++.+++.... ...+.++.+.++
T Consensus 220 -----------~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 220 -----------AGRWGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred -----------CCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 1236778999999999887432 223467776554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-19 Score=180.73 Aligned_cols=235 Identities=20% Similarity=0.180 Sum_probs=162.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|+||.++++.|.++|++|++++|......... ..+... .++.++.+|+++.+++.+++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~---~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAA---AELGGP-DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHH---HHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999988543222222 222111 4788999999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCC-cEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKV-KTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ........+++|+.++..+++.+. +.+. .++|++||...+...
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~---------- 565 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG---------- 565 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC----------
Confidence 37999999999764322 223345678899999999977664 3343 689999997665322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc-CCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce-
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI-GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL- 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 267 (393)
.....|+.+|...+.+++.++.+ .|+++.+++|+.|| ++..... .+. .......+.+.-
T Consensus 566 -~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~-------------~~~--~~~~~~~g~~~~~ 629 (681)
T PRK08324 566 -PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTG-------------EWI--EARAAAYGLSEEE 629 (681)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccc-------------hhh--hhhhhhccCChHH
Confidence 23578999999999999998776 46999999999998 5531100 000 000111111100
Q ss_pred --eEcCccccCCCCccccccccHHHHHHHHHHHHhc-CCCCCcceEEecCCCc
Q 016208 268 --KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AKPGKVGIYNVGTGKG 317 (393)
Q Consensus 268 --~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~-~~~~~~~~yni~~~~~ 317 (393)
..++ .+...+.+++++|+|++++.++.. .....+.+|++.++..
T Consensus 630 ~~~~~~------~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 630 LEEFYR------ARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNA 676 (681)
T ss_pred HHHHHH------hcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCch
Confidence 0111 345567899999999999998852 2233457999987754
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-19 Score=159.61 Aligned_cols=206 Identities=19% Similarity=0.172 Sum_probs=142.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh------C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------N 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------~ 123 (393)
++|+||||+|+||.++++.|.++|++|++++|..... +.+.. .+++++.+|+.+.+++.++++. .
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~----~~~~~-----~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDV----ARMNS-----LGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHh----HHHHh-----CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999988754221 11111 2578899999999887766543 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHH----HHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVI----LEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.+|.|||+||...... ........++.|+.++.++ ++.+++.+.+++|++||...+.. ...
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~ 142 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIS-----------TPG 142 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccC-----------CCC
Confidence 5799999999653221 2223456788999887765 67777777789999999644322 123
Q ss_pred CChHHHHHHHHHHHHHHHHh---hCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSK---TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...|.+.+.++. ..+++++++|||.+..+- ...+... ... .+...
T Consensus 143 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~-------------------~~~~~~~-~~~---~~~~~- 198 (256)
T PRK08017 143 RGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRF-------------------TDNVNQT-QSD---KPVEN- 198 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccch-------------------hhcccch-hhc---cchhh-
Confidence 67899999999998776533 368999999998775431 1110000 000 11111
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
.+...+.+++++|+++++..+++.+..
T Consensus 199 -----~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 199 -----PGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred -----hHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 233345689999999999999987654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=155.58 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=155.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.++++|||||+|+||.+++++|+++|++|++++|...... +...++......+.++.+|+.+++++.++++.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAE---LAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHH---HHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999887543222 22222222234677889999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++..+++.+.. .+..++|++||...... .
T Consensus 84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-----------~ 152 (254)
T PRK08085 84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELG-----------R 152 (254)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccC-----------C
Confidence 35899999999753221 2234456788999998888777654 34568999999644311 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+++.++.+ .|+++..++||.+..+...... . ............|
T Consensus 153 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~------------~-~~~~~~~~~~~~p----- 214 (254)
T PRK08085 153 DTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALV------------E-DEAFTAWLCKRTP----- 214 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhc------------c-CHHHHHHHHhcCC-----
Confidence 23568999999999999998776 5899999999999887422100 0 0112222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+++++.+++.... .-.+.+..+.++
T Consensus 215 -----------~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 215 -----------AARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred -----------CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 1236688999999999887432 223456656444
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=158.03 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=127.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+|+||||||+||++++++|+++|++|++++|....... ...++.....++.++.+|+.+.+++.++++. .+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~---~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEE---TLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999875433222 2222222235788899999999998887753 37
Q ss_pred CcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||+||......... .....+++|+.++.++.+. +++.+..++|++||...+... ...
T Consensus 78 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~-----------~~~ 146 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG-----------PAM 146 (270)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC-----------CCc
Confidence 999999999764432222 2344677888777665554 556667799999997665332 235
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
..|+.+|...+.+.+.++.+ .|+++++++|+.+..+.
T Consensus 147 ~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 186 (270)
T PRK05650 147 SSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNL 186 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCc
Confidence 78999999998888887776 58999999999998764
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=155.78 Aligned_cols=224 Identities=14% Similarity=0.073 Sum_probs=153.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++|+||||+|+||.+++++|+++|++|+++.+..... ..+...++......+.++.+|+.+++++.+++++ .
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG--AKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH--HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999876533221 1111222222235788999999999998877654 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.+|+|||+||...... ........+.+|+.++..+++++... + .+++|++||.... .+..
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~-----------~~~~ 148 (256)
T PRK12743 80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH-----------TPLP 148 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc-----------CCCC
Confidence 6899999999764321 22345667889999999999877643 1 2589999995322 2334
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+++.++.+ .|++++.++||.+..+... ..............+ +
T Consensus 149 ~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~---------------~~~~~~~~~~~~~~~---~-- 208 (256)
T PRK12743 149 GASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNG---------------MDDSDVKPDSRPGIP---L-- 208 (256)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcccc---------------ccChHHHHHHHhcCC---C--
Confidence 5679999999999999887765 5799999999999987421 000111111111111 1
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
..+.+.+|+++++.+++.... ...+..+.+.++.
T Consensus 209 -----------~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 209 -----------GRPGDTHEIASLVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred -----------CCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 124578999999999887432 2234677776553
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=156.18 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=152.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++++||||+|.||.+++++|.++|++|++++|.........+.+.. ...++.++.+|+.+++++.+++++
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA---EGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999998864333322222222 234678899999999998887754
Q ss_pred CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||.... . ....+....+++|+.+...+++ .+++.+..++|++||...+.. +.
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~----------~~ 151 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA----------GF 151 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc----------CC
Confidence 379999999997532 1 1123345678899987766644 445555668999999765521 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.+-.+.... + ...+..........+
T Consensus 152 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~------------~~~~~~~~~~~~~~~----- 213 (254)
T PRK07478 152 PGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRA-M------------GDTPEALAFVAGLHA----- 213 (254)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCccccc-c------------cCCHHHHHHHHhcCC-----
Confidence 23578999999999999988776 47999999999986552110 0 000111111111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+++++++++.... ...|+++.+.++
T Consensus 214 -----------~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 248 (254)
T PRK07478 214 -----------LKRMAQPEEIAQAALFLASDAASFVTGTALLVDGG 248 (254)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCc
Confidence 1225678999999999887432 223467766544
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=155.85 Aligned_cols=225 Identities=14% Similarity=0.095 Sum_probs=152.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
..|+++||||+|+||.+++++|.++|++|+++.+... ...+.+.. .++.++.+|+.+++++.++++.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~l~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE---NEAKELRE-----KGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHh-----CCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999999999998765332 12222221 2578899999999999888754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHH----HHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLV----ILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.++.. ++..+++.+..++|++||...++.. ..
T Consensus 78 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~----------~~ 147 (255)
T PRK06463 78 GRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA----------AE 147 (255)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC----------CC
Confidence 37999999999753221 223445678899999544 4555555556799999997776421 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+++.++.+ .|+++..++||.+-.+-...... . .....+........+
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~---~-------~~~~~~~~~~~~~~~------ 211 (255)
T PRK06463 148 GTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKS---Q-------EEAEKLRELFRNKTV------ 211 (255)
T ss_pred CccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccC---c-------cchHHHHHHHHhCCC------
Confidence 3467999999999999998865 58999999999885442110000 0 011111122222211
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+...+|++++++.++.... ...+..+.+.++.
T Consensus 212 ----------~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 212 ----------LKTTGKPEDIANIVLFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred ----------cCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 2235679999999999887533 2345688786554
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=160.53 Aligned_cols=185 Identities=11% Similarity=0.035 Sum_probs=131.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|+||.+++++|+++|++|++++|.........+.+.... ....+.++.+|+.+.+++.+++++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-PGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 455899999999999999999999999999999885433222222222211 124678899999999999887754
Q ss_pred -CCCcEEEEcccccCccC--CccChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeec--CCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE--STLEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYG--EPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~--~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg--~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ........+++|+.+ +..+++.+++.+.+++|++||...+. ........++.+.
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~ 172 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERRY 172 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccCC
Confidence 36999999999754321 223456678899988 66677777766667999999976543 2111122222344
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEE--EeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMI--LRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~i--lRp~~v~G~ 232 (393)
.+...|+.||++.+.+.+.++.+ .++++++ +.||.|..+
T Consensus 173 ~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~ 216 (306)
T PRK06197 173 NRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTE 216 (306)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCc
Confidence 56778999999999999988776 3555554 479888654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=158.46 Aligned_cols=231 Identities=15% Similarity=0.099 Sum_probs=154.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||++++++|+++|++|++++|......... .++.....++.++.+|+.+.+++..++++
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVV---AEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999988533222222 22222234678899999999988877654
Q ss_pred -CCCcEEEEcccccCccC-------------------CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeeccee
Q 016208 123 -NAFDAVMHFAAVAYVGE-------------------STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCAT 178 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~-------------------~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~v 178 (393)
.++|+|||+||...... ...+....+++|+.++..+++. +.+.+..++|++||...
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~ 164 (278)
T PRK08277 85 FGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNA 164 (278)
T ss_pred cCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchh
Confidence 37999999999653221 1233456778898888765544 44455568999999877
Q ss_pred ecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHH
Q 016208 179 YGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGA 255 (393)
Q Consensus 179 yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
+.. ..+...|+.+|...+.+++.++.+ .|+++..++||.+..+.......... .....
T Consensus 165 ~~~-----------~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~--------~~~~~ 225 (278)
T PRK08277 165 FTP-----------LTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNED--------GSLTE 225 (278)
T ss_pred cCC-----------CCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhcccc--------ccchh
Confidence 643 223568999999999999988877 48999999999998874221000000 00011
Q ss_pred HHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhc-CC-CCCcceEEecCC
Q 016208 256 CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AK-PGKVGIYNVGTG 315 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~-~~-~~~~~~yni~~~ 315 (393)
.........| ...+...+|+|+++++++.. .. .-.+..+.+.++
T Consensus 226 ~~~~~~~~~p----------------~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 226 RANKILAHTP----------------MGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred HHHHHhccCC----------------ccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 1112222211 12356789999999998875 22 223467777544
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=156.00 Aligned_cols=227 Identities=16% Similarity=0.145 Sum_probs=155.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++|+||||+|+||.+++++|+++|++|++++|.........+.+.. ...++.++.+|+.+.+++.+++++
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE---AGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999998854332222222222 235688999999999998887754
Q ss_pred -CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... ....+....+++|+.++..+++.+ .+.+..++|++||...+....
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~--------- 152 (253)
T PRK06172 82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAP--------- 152 (253)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC---------
Confidence 3689999999975321 122345567889999887665543 344556899999977664422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|+++.++.||.+-.+...... ...+..........+
T Consensus 153 --~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~~---- 214 (253)
T PRK06172 153 --KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAY------------EADPRKAEFAAAMHP---- 214 (253)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhc------------ccChHHHHHHhccCC----
Confidence 3578999999999999988876 4799999999988655311000 001111222222211
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++.+.+++... ..-.|+.+++.++
T Consensus 215 ------------~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 215 ------------VGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred ------------CCCccCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 122567899999999988753 2234567777655
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=165.39 Aligned_cols=180 Identities=14% Similarity=0.119 Sum_probs=130.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||.+++++|+++|++|++++|...... +...++ ..+.++.+|+++.+++.+++++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~---~~~~~l----~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAR---EALAGI----DGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh----hhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 34589999999999999999999999999999988533222 222222 2478899999999999887754
Q ss_pred -CCCcEEEEcccccCccC--CccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCC-CCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE--STLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEP-DKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~--~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ........+++|+.++..+++ .+++.+..++|++||....... .....++..+..
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~ 176 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYD 176 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCC
Confidence 47999999999753321 223456678899998655554 4555555699999997543221 111111123344
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
+...|+.||.+.+.+.+.++.. .|+++++++||.+.++.
T Consensus 177 ~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~ 218 (315)
T PRK06196 177 KWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPL 218 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCc
Confidence 5678999999999998887664 58999999999999874
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=155.81 Aligned_cols=171 Identities=19% Similarity=0.148 Sum_probs=126.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++++||||+|+||.+++++|+++|++|++++|...........+. ....++.++.+|+.+++++.+++++ .
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS---KDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999885433222222222 2234678899999999998887754 3
Q ss_pred CCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
++|+|||+||....... .......+++|+.++..+++.+.. .+ ..++|++||...+... .
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~ 147 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN-----------P 147 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC-----------C
Confidence 69999999987533221 223456788999998777766643 22 2489999996554221 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
....|+.+|...+.+++.++.+ .|++++.++||.+..+.
T Consensus 148 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 148 ELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 2568999999999998888765 68999999999998763
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=154.72 Aligned_cols=226 Identities=17% Similarity=0.120 Sum_probs=150.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++++||||+|+||.+++++|.+.|++|+++.+... ....+...++......+..+.+|+.+.+++..+++.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK--EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence 3479999999999999999999999999988643221 111122222222234567888999998877655432
Q ss_pred ------CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ------NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ------~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||......... .....+++|+.++..+++++... +..++|++||...+...
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-------- 152 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL-------- 152 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC--------
Confidence 16999999999753322222 23557779999999998877653 23589999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|+..+.+++.++.+ .|+++..+.||.|.++..... .............
T Consensus 153 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~--------------~~~~~~~~~~~~~--- 212 (252)
T PRK12747 153 ---PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAEL--------------LSDPMMKQYATTI--- 212 (252)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhc--------------ccCHHHHHHHHhc---
Confidence 23568999999999999988776 589999999999987642100 0000011111100
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
.....+.+++|+++++.+++.... ...+..+.+.++
T Consensus 213 ------------~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 213 ------------SAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred ------------CcccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 012236789999999999886432 223467777554
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-18 Score=154.13 Aligned_cols=223 Identities=13% Similarity=0.042 Sum_probs=152.6
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCC--------CchhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 48 GVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRG--------NMGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 48 ~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
.+++|+|||||| .||.+++++|+++|++|++++|...+ ..........+......+.++.+|+++.+++.
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 83 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPN 83 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 447899999996 69999999999999999999885211 11111111222222346889999999999988
Q ss_pred HHHhh-----CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCC
Q 016208 118 KIFAE-----NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDK 184 (393)
Q Consensus 118 ~~~~~-----~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~ 184 (393)
++++. ..+|+|||+||....... ..+....+++|+.++..+++++... +.+++|++||...++..
T Consensus 84 ~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~-- 161 (256)
T PRK12748 84 RVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM-- 161 (256)
T ss_pred HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC--
Confidence 77754 468999999997533221 2334567889999999999887643 34589999997665432
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
.+...|+.+|.+.|.+++.++.+ .+++++.++||.+..+.. .........
T Consensus 162 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~------------------~~~~~~~~~ 214 (256)
T PRK12748 162 ---------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWI------------------TEELKHHLV 214 (256)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCC------------------ChhHHHhhh
Confidence 23568999999999998887765 589999999998765421 111111111
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+ ...+...+|+++++..++.... ...++++++.++
T Consensus 215 ~~~~----------------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 215 PKFP----------------QGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred ccCC----------------CCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 1111 0124457999999998877532 223578888654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=156.62 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=126.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++||||||+|+||.+++++|+++|++|++++|..... ..+.++.+|+.+++++.+++++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~--------------~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY--------------NDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc--------------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999998754321 3678899999999998887754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||....... ..+....+++|+.++..+++++.. .+..++|++||...+.. .
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 138 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAV-----------T 138 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccC-----------C
Confidence 369999999997543222 223445678999999888777643 45579999999766532 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~ 232 (393)
.+...|+.+|...+.+.+.++.+. ++++..++||.+-.+
T Consensus 139 ~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~ 179 (258)
T PRK06398 139 RNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTP 179 (258)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccch
Confidence 246789999999999999988763 489999999988655
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=158.39 Aligned_cols=200 Identities=19% Similarity=0.062 Sum_probs=142.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||||.||++++++|+++|++|++++|.... ..+....+ ..+.++.+|+.+++++.++++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEAL---AKETAAEL----GLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHh----ccceEEEccCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999998774322 11111221 2578899999999998776654
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||....... .......+++|+.++..+++.+ .+.+.+++|++||...+...
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 144 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV----------- 144 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC-----------
Confidence 468999999997643322 2234557789998877766554 45667799999997665322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++|+.+-.+... +.+
T Consensus 145 ~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~---------------------------~~~----- 192 (273)
T PRK07825 145 PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA---------------------------GTG----- 192 (273)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc---------------------------ccc-----
Confidence 23578999999888877766554 5899999999987553210 000
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
+.....+++++|+|++++.++.++..
T Consensus 193 --------~~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 193 --------GAKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred --------cccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 00112368899999999999986543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=156.03 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=126.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.++++|||||+|+||.++++.|+++|++|++++|. .... +...++.....++.++.+|+.+.+++.++++.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVS---ETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHH---HHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999885 2222 22222222234688999999999988877654
Q ss_pred -CCCcEEEEcccccCc-cCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-GES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||.... ... .......+++|+.++..+++.+. +.+ .++|++||...+...
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 148 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAAD---------- 148 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCC----------
Confidence 368999999997532 111 12234566788888776665543 344 589999997655322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.....|+.+|...+.+++.++.+ .|+++..+.||.|..+
T Consensus 149 -~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~ 190 (272)
T PRK08589 149 -LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETP 190 (272)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCc
Confidence 12468999999999999998775 5799999999998765
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=155.25 Aligned_cols=221 Identities=19% Similarity=0.192 Sum_probs=152.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
.++|+||||+|+||+++++.|+++|++|+++.+... ........++ ..++.++.+|+.+++++.++++. .
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE--DAAEALADEL---GDRAIALQADVTDREQVQAMFATATEHFG 79 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 379999999999999999999999999988654322 1111111122 24688899999999998887754 1
Q ss_pred -CCcEEEEcccccCc----------cCCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCC
Q 016208 124 -AFDAVMHFAAVAYV----------GESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 124 -~~d~Vi~~A~~~~~----------~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.+|+|||+|+.... .....+....++.|+.++.++++++. ..+..++|++||....
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--------- 150 (253)
T PRK08642 80 KPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ--------- 150 (253)
T ss_pred CCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc---------
Confidence 39999999986311 01122345678899999999998885 3445689999985332
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
.+..|...|+.+|...|.+++.++.+ .|+++..++||.+..+.... ...+.......+..|
T Consensus 151 --~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~--------------~~~~~~~~~~~~~~~ 214 (253)
T PRK08642 151 --NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASA--------------ATPDEVFDLIAATTP 214 (253)
T ss_pred --CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhc--------------cCCHHHHHHHHhcCC
Confidence 13345678999999999999998876 57999999999886542110 111222222322222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+.+.+|+++++..++... ....|+.+.+.++
T Consensus 215 ----------------~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 215 ----------------LRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred ----------------cCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 123788999999999998743 2334567777554
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=153.02 Aligned_cols=221 Identities=17% Similarity=0.108 Sum_probs=155.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||++++++|+++|++|++++|.... . .....+.++.+|+.+.+++.++++.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----~------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----T------VDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----h------hcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999885422 0 0124688999999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA-----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ........+++|+.++..+++.+.. .+..++|++||...+...
T Consensus 73 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---------- 142 (252)
T PRK07856 73 HGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS---------- 142 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC----------
Confidence 36899999999753321 1223456788999999999988754 134689999997655322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...|.+++.++.+. .+++..++||.+..+.....++ ............|
T Consensus 143 -~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~~~----- 203 (252)
T PRK07856 143 -PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYG-------------DAEGIAAVAATVP----- 203 (252)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhcc-------------CHHHHHHHhhcCC-----
Confidence 235789999999999999988763 3899999999987653211000 0111111222211
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+...+|+++++++++... ....+..+.+.++...
T Consensus 204 -----------~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~ 241 (252)
T PRK07856 204 -----------LGRLATPADIAWACLFLASDLASYVSGANLEVHGGGER 241 (252)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcch
Confidence 122567899999999988743 2234578888666543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=154.75 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=126.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--CCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--NAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d 126 (393)
|++|+||||||+||.+++++|+++|++|++++|.... .+.+.. ...++.++.+|+++.+++.+++++ ..+|
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d 73 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV----LDELHT---QSANIFTLAFDVTDHPGTKAALSQLPFIPE 73 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHH---hcCCCeEEEeeCCCHHHHHHHHHhcccCCC
Confidence 5789999999999999999999999999999884321 111211 124688999999999999999865 2479
Q ss_pred EEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 127 AVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 127 ~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
++||+||...... ........+++|+.++.++++++... +..++|++||..... +......|+
T Consensus 74 ~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~~~~Y~ 142 (240)
T PRK06101 74 LWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL-----------ALPRAEAYG 142 (240)
T ss_pred EEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc-----------CCCCCchhh
Confidence 9999998643211 12223567899999999999998753 235799988854321 112356899
Q ss_pred HHHHHHHHHHHHHHh---hCCCcEEEEeeccccCCC
Q 016208 201 KAKKMSEDIIIDFSK---TTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~G~~ 233 (393)
.+|...+.+.+.++. ..|++++++|||.++++.
T Consensus 143 asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~ 178 (240)
T PRK06101 143 ASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPL 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCC
Confidence 999999999988764 368999999999998863
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=156.83 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=127.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh------
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------ 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------ 122 (393)
|+++|||||||+||++++++|+++|++|++++|......... ... . ...+.++.+|+.+.+++.++++.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~---~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALA---AEL-G-AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH---HHh-c-CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999987543222111 111 1 24788999999999998877652
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.++.++++++. ..+..++|++||...+....
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 144 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQP----------- 144 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCC-----------
Confidence 36899999999764322 223456688899999999988774 34456899999964432211
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...+.+.+.++.+ .++++++++|+.+-.+
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~ 185 (260)
T PRK08267 145 GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTA 185 (260)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCc
Confidence 2568999999999999888754 5899999999998654
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=153.73 Aligned_cols=226 Identities=15% Similarity=0.111 Sum_probs=153.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++|+||||+|+||.+++++|+++|++|++++|........ .+++......+.++.+|+.+.+++.+++++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAV---ADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4447999999999999999999999999999998854322222 222222234577899999999998877654
Q ss_pred -CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+|+.... .....+....++.|+.++..+++++ ++.+..++|++||...+..
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 151 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSP----------- 151 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCC-----------
Confidence 368999999986421 1122234567889999988777665 4445678999998644321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|.+.|.+++.++.+ .|++++.+.||.+-.+-....+ -............+
T Consensus 152 ~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~-------------~~~~~~~~~~~~~~---- 214 (252)
T PRK07035 152 GDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALF-------------KNDAILKQALAHIP---- 214 (252)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCccccccc-------------CCHHHHHHHHccCC----
Confidence 224678999999999999998776 5899999999988654211000 00112222222211
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+|+++.+++.... ...++++.+.++
T Consensus 215 ------------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 215 ------------LRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred ------------CCCcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 1225678999999999887543 224467777543
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=158.03 Aligned_cols=167 Identities=16% Similarity=0.119 Sum_probs=122.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+++||||||||+||++++++|+++|++|++++|............. ....++.++.+|+.+++++.+++. .++|+|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~-~~id~v 77 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA---RRGLALRVEKLDLTDAIDRAQAAE-WDVDVL 77 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcceEEEeeCCCHHHHHHHhc-CCCCEE
Confidence 3689999999999999999999999999999885432221111111 112468899999999999998874 389999
Q ss_pred EEcccccCccCC----ccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 129 MHFAAVAYVGES----TLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 129 i~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
||+||....... .......+++|+.++.++.+ .+.+.+.+++|++||...+... .....|+
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~-----------~~~~~Y~ 146 (257)
T PRK09291 78 LNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG-----------PFTGAYC 146 (257)
T ss_pred EECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC-----------CCcchhH
Confidence 999997643222 22234567788887665554 4455666899999996543221 1256899
Q ss_pred HHHHHHHHHHHHHHhh---CCCcEEEEeecccc
Q 016208 201 KAKKMSEDIIIDFSKT---TNMAVMILRYFNVI 230 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~ 230 (393)
.+|...|.+.+.++.. .|++++++|||.+.
T Consensus 147 ~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 147 ASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 9999999988876654 69999999998764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-18 Score=154.37 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=156.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|.||.++++.|.++|++|++++|...........+.... ...++.++.+|+.+.+++.++++.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999885433222222222211 124678899999999988777654
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||..... ....+....+.+|+.++..+++++. +.+.+++|++||...+...
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~----------- 154 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV----------- 154 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC-----------
Confidence 4689999999974321 2234456678899999988887764 3455789999997665432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+++.++.+ .+++++.++||.+..+..... .-............+ +
T Consensus 155 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~-------------~~~~~~~~~~~~~~~-~--- 217 (257)
T PRK09242 155 RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGP-------------LSDPDYYEQVIERTP-M--- 217 (257)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccc-------------cCChHHHHHHHhcCC-C---
Confidence 23568999999999999988765 589999999999988743210 001112222222222 1
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
.-+...+|++.++..++..... ..++.+.+.++
T Consensus 218 ------------~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 218 ------------RRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred ------------CCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 1144679999999998864322 23467767543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=160.24 Aligned_cols=216 Identities=17% Similarity=0.146 Sum_probs=149.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||.+++++|+++|++|++++|.........+.+. ....++.++.+|++|.+++.++++.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~---~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR---AAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999875432222222222 2235678899999999999887653
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHH----HHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLV----ILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||...... ........+++|+.+..+ +++.+.+.+..++|++||...+...+
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~---------- 152 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIP---------- 152 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCC----------
Confidence 37999999999754322 122334567777666554 55556666667899999987774322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
....|+.+|...+.+.+.++.+ .++++++++|+.+..|.. ...... ....+
T Consensus 153 -~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~-------------------~~~~~~-~~~~~--- 208 (334)
T PRK07109 153 -LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF-------------------DWARSR-LPVEP--- 208 (334)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh-------------------hhhhhh-ccccc---
Confidence 2568999999999988877654 369999999999876521 111000 00000
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGT 314 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~ 314 (393)
.....++.++|+|++++.++..+. ..+.++.
T Consensus 209 -----------~~~~~~~~pe~vA~~i~~~~~~~~----~~~~vg~ 239 (334)
T PRK07109 209 -----------QPVPPIYQPEVVADAILYAAEHPR----RELWVGG 239 (334)
T ss_pred -----------cCCCCCCCHHHHHHHHHHHHhCCC----cEEEeCc
Confidence 111235789999999999998652 3565754
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=155.18 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=129.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++|+||||+|+||.+++++|+++|++|++++|.........+.+... ....++.++.+|+.+.+++.+++++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999988543322222222221 0234678899999999998888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..+|++||+||...... ...+....+++|+.++..+++++. +.+..++|++||...+...
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 152 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII----------- 152 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC-----------
Confidence 37999999999653221 223455678899999888877764 3445689999997554321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+..+|+.+|...+.+.+.++.+ .|+++..++||.+-.+
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~ 194 (260)
T PRK07063 153 PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQ 194 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCh
Confidence 23468999999999999998776 4799999999988654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=153.20 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=155.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|.||.+++++|+++|++|++++|.........+.+. ....++.++.+|+++.+++.+++++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR---ELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 455899999999999999999999999999998775432222222222 2234688899999999999888765
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||..... .........+++|+.++..+++.+. +.+..++|++||...... .
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 153 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELG-----------R 153 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCC-----------C
Confidence 4589999999976432 2233455577799988887666654 345678999999543211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+++.++.+ .|++++.++||.+..+........... +. .......+....+
T Consensus 154 ~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~------~~-~~~~~~~~~~~~~----- 221 (265)
T PRK07097 154 ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQAD------GS-RHPFDQFIIAKTP----- 221 (265)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhcccc------cc-chhHHHHHHhcCC-----
Confidence 23578999999999999998877 489999999999988742210000000 00 0011111111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+++++..++.... ...++.+.+.++
T Consensus 222 -----------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 256 (265)
T PRK07097 222 -----------AARWGDPEDLAGPAVFLASDASNFVNGHILYVDGG 256 (265)
T ss_pred -----------ccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 1125678999999999988532 223466666544
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=151.78 Aligned_cols=228 Identities=13% Similarity=0.055 Sum_probs=154.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||++++++|.++|++|++++|..... ..+...++.....++.++.+|+.+.+++.+++++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~--~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG--LAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH--HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999998854321 1122222222234678899999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++..+++++ .+.+.+++|++||...+.....
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 154 (254)
T PRK06114 84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRG--------- 154 (254)
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC---------
Confidence 35899999999764322 22344567889999987766654 3445568999999665422211
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+.... + .... .........|
T Consensus 155 ~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~-----~--------~~~~-~~~~~~~~~p----- 215 (254)
T PRK06114 155 LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR-----P--------EMVH-QTKLFEEQTP----- 215 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc-----c--------cchH-HHHHHHhcCC-----
Confidence 12468999999999999888765 58999999999997764210 0 1111 1122222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+..++|++.++++++... ....|+++.+.++
T Consensus 216 -----------~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 216 -----------MQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred -----------CCCCcCHHHHHHHHHHHcCccccCcCCceEEECcC
Confidence 112567899999999988743 2234467777544
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=150.85 Aligned_cols=222 Identities=15% Similarity=0.112 Sum_probs=149.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
+++|||||+|+||.+++++|+++|++|+++.|.. .....+...+......++.++.+|+.+++++.++++. ..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPN--EERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999999987732 1212222222222234688999999999988877653 36
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHH----HHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVIL----EAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||+||...... ........++.|+.++..++ ..+++.+.+++|++||....... .+.
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~-----------~~~ 147 (242)
T TIGR01829 79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQ-----------FGQ 147 (242)
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC-----------CCc
Confidence 899999999753221 22344556788998877754 44555667799999996433211 135
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...+.+++.++.+ .+++++.++|+.+.++... .+.+..........+ +
T Consensus 148 ~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~---------------~~~~~~~~~~~~~~~-~------ 205 (242)
T TIGR01829 148 TNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVM---------------AMREDVLNSIVAQIP-V------ 205 (242)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccc---------------ccchHHHHHHHhcCC-C------
Confidence 68999999999888887654 5899999999999876421 112222222222222 1
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
..+...+|+++++..++..+. ...++.+.+.++
T Consensus 206 ---------~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 206 ---------GRLGRPEEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred ---------CCCcCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 124467899999887776432 224568877665
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=157.37 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=127.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++|+||||+|+||.++++.|+++|++|++++|.........+.+. .....+.++.+|+.|.+++.++++.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRIT---RAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999885422222222222 1234678899999999998888752
Q ss_pred -CCCcEEEEcccccCccCCc------cChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST------LEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~------~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||........ .+....+++|+.++..+++++ ++.+..++|++||.+++...
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 185 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEA--------- 185 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC---------
Confidence 3799999999976432211 233457889998877776655 35566799999997665321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
......|+.+|+..+.+.+.++.+ .|+++++++||.+-.+
T Consensus 186 -~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~ 228 (293)
T PRK05866 186 -SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATP 228 (293)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCc
Confidence 112568999999999998887665 5899999999977554
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-18 Score=153.11 Aligned_cols=173 Identities=14% Similarity=0.086 Sum_probs=128.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++++||||+|+||++++++|+++|++|++++|...........+.... ....+.++.+|+.+.+++.+++++ .
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-PGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999999885433222222222211 124688899999999998877653 3
Q ss_pred CCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||+...... .......+++|+.+..++++++. +.+.+++|++||...+... +.+
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~~~ 150 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL----------PGV 150 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC----------CCC
Confidence 69999999997644321 22334578899999888887764 4466799999996554221 123
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+.+.++.+ .++++++++|+.+.++
T Consensus 151 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~ 190 (248)
T PRK08251 151 KAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSE 190 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcch
Confidence 578999999999998887765 4799999999998765
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=149.97 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=149.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
+.+++|+||||+|+||+++++.|+++|++|+++.+... ....+...+ .++.++.+|+.+.+++.+++++ .++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~--~~~~~l~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK--DAAERLAQE-----TGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH--HHHHHHHHH-----hCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 44589999999999999999999999999988755322 111111111 2467888999999998888765 358
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
|+|||+||...... ...+....+++|+.++..++..+... +..++|++||.... ..+..+...|
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~~~~~~~~~Y 146 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------RMPVAGMAAY 146 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------cCCCCCCcch
Confidence 99999999753321 22345678889999999887666543 23589999995431 1133456789
Q ss_pred HHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 200 GKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
+.+|+..|.+++.++.+ .|+++++++||.+..+... ...+ .........+
T Consensus 147 ~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~---------------~~~~-~~~~~~~~~~----------- 199 (237)
T PRK12742 147 AASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANP---------------ANGP-MKDMMHSFMA----------- 199 (237)
T ss_pred HHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccc---------------cccH-HHHHHHhcCC-----------
Confidence 99999999999887765 5799999999998765311 0001 1112222111
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+...+|+++++.+++..... ..+..+.+.++
T Consensus 200 -----~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dgg 234 (237)
T PRK12742 200 -----IKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGA 234 (237)
T ss_pred -----CCCCCCHHHHHHHHHHHcCcccCcccCCEEEeCCC
Confidence 11256789999999998875332 23456666443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=153.37 Aligned_cols=171 Identities=14% Similarity=0.086 Sum_probs=127.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--CCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--NAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d 126 (393)
||+|+||||+|+||.+++++|+++|++|++++|.........+.+... ...++.++.+|+.+.+++.+++++ ..+|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR--GAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh--cCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 689999999999999999999999999999988643322222222211 124788999999999998887754 3579
Q ss_pred EEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCCCCCCh
Q 016208 127 AVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQKPINP 198 (393)
Q Consensus 127 ~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~ 198 (393)
+|||+||...... ...+....++.|+.++.++++++.. .+.+++|++||....... .....
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~~~~ 147 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR-----------ASNYV 147 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC-----------CCCcc
Confidence 9999998653322 1223345788999999988877653 456789999996432211 12457
Q ss_pred HHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 199 YGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
|+.+|...+.+.+.++.+ .|+++++++|+.+.++
T Consensus 148 Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~ 184 (243)
T PRK07102 148 YGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTP 184 (243)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCh
Confidence 999999999999887654 5899999999999876
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=155.45 Aligned_cols=231 Identities=15% Similarity=0.148 Sum_probs=156.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+..++|+||||+|+||.+++++|.++|++ |++++|......... .++......+.++.+|+.+++++.++++.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQA---AELEALGAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH---HHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 44589999999999999999999999998 999887533222222 22222234677899999999998887754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||...... ........++.|+.++.++++++... + ..++|++||...++...
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~-------- 152 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP-------- 152 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC--------
Confidence 36999999999754221 22233556889999999988777532 2 35799999987765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
....|+.+|...|.+++.++.+ .+++++.++|+.++++........ .......+........+
T Consensus 153 ---~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 218 (260)
T PRK06198 153 ---FLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQRE--------FHGAPDDWLEKAAATQP--- 218 (260)
T ss_pred ---CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhh--------ccCCChHHHHHHhccCC---
Confidence 2568999999999999987765 469999999999988752100000 00011111222222111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+++++|++++++.++..... ..++.|++.++
T Consensus 219 -------------~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~ 253 (260)
T PRK06198 219 -------------FGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQS 253 (260)
T ss_pred -------------ccCCcCHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence 23467899999999998864332 24567877554
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=150.24 Aligned_cols=214 Identities=16% Similarity=0.180 Sum_probs=148.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d 126 (393)
.+++++||||+|+||++++++|+++|++|++++|...... ..++.++.+|+.+. +++.+.+ .++|
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~------------~~~~~~~~~D~~~~~~~~~~~~--~~id 69 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL------------SGNFHFLQLDLSDDLEPLFDWV--PSVD 69 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc------------CCcEEEEECChHHHHHHHHHhh--CCCC
Confidence 3479999999999999999999999999999987532211 24678899999887 4444434 5799
Q ss_pred EEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 127 AVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 127 ~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
+|||+||.... .....+....+++|+.++.++++++.. .+..++|++||...+.... ...
T Consensus 70 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----------~~~ 138 (235)
T PRK06550 70 ILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGG-----------GGA 138 (235)
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC-----------CCc
Confidence 99999996421 112334566788999999998888753 3446899999976543221 246
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...+.+.+.++.+ .|+++++++|+.+..+.....+ ....+........+
T Consensus 139 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~-------------~~~~~~~~~~~~~~--------- 196 (235)
T PRK06550 139 AYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADF-------------EPGGLADWVARETP--------- 196 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccccccc-------------CchHHHHHHhccCC---------
Confidence 7999999999998888776 4899999999999877432110 00111122222222
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+|+++++++.... ...+.++.+.++
T Consensus 197 -------~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 197 -------IKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred -------cCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 2236678999999999986432 223457766554
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=152.70 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=153.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||++++++|+++|++|++++|... .. +...++......+.++.+|+.+.+++.+++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~---~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IE---KLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HH---HHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999987532 11 12222211234678899999999998888754
Q ss_pred -CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..+|+|||+||........ ......++.|+.++..+++.+.. .+..++|++||...... +.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------~~ 149 (263)
T PRK08226 80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMV----------AD 149 (263)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccc----------CC
Confidence 3789999999975433222 22344688999999998888653 34568999998543110 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...|.+++.++.+ .+++++.++||.+.++-.......... .........+....|
T Consensus 150 ~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~-------~~~~~~~~~~~~~~p----- 217 (263)
T PRK08226 150 PGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNP-------EDPESVLTEMAKAIP----- 217 (263)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccC-------CCcHHHHHHHhccCC-----
Confidence 23568999999999999988776 479999999999988632110000000 001122223322222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++++.+++... ....++.+-+.++
T Consensus 218 -----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg 252 (263)
T PRK08226 218 -----------LRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252 (263)
T ss_pred -----------CCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCC
Confidence 123568899999999887642 2223456666544
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-18 Score=156.29 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=125.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
||+++||||+|+||+++++.|+++|++|++++|..... ..+.. .++.++.+|+.+.+++.++++. .
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDV----EALAA-----AGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 67999999999999999999999999999998753221 11111 3578899999999998877754 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh---cCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA---HKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
++|+|||+||...... ...+....+++|+.++.++++.+.. .+..++|++||...+... ...
T Consensus 72 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~~ 140 (274)
T PRK05693 72 GLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVT-----------PFA 140 (274)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCC-----------CCc
Confidence 7999999999754322 2234556788999999888887743 234689999986544221 125
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+|+.+|...+.+.+.++.+ .|+++++++||.|..+
T Consensus 141 ~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 141 GAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 68999999999998877665 6899999999999765
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-18 Score=152.06 Aligned_cols=222 Identities=20% Similarity=0.110 Sum_probs=154.8
Q ss_pred EEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-CCcEEEEc
Q 016208 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-AFDAVMHF 131 (393)
Q Consensus 53 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~ 131 (393)
+||||+|+||++++++|+++|++|++++|.... .......+. ...+++++.+|+.+.+++.++++.. ++|++||+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~---~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDR---LAAAARALG-GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 699999999999999999999999999885322 112122221 1356889999999999999988653 47999999
Q ss_pred ccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 132 AAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 132 A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
+|...... ...+....+++|+.++.+++++....+.+++|++||...+... .+...|+.+|...+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~-----------~~~~~Y~~sK~a~~ 145 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPS-----------ASGVLQGAINAALE 145 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCC-----------CcchHHHHHHHHHH
Confidence 99754321 2234566788999999999996665566799999998776432 23578999999999
Q ss_pred HHHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 208 DIIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 208 ~~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
.+++.++.+ .+++++.++|+.+-.+...... . .....+........+ . ..+.
T Consensus 146 ~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~---~--------~~~~~~~~~~~~~~~---~-------------~~~~ 198 (230)
T PRK07041 146 ALARGLALELAPVRVNTVSPGLVDTPLWSKLA---G--------DAREAMFAAAAERLP---A-------------RRVG 198 (230)
T ss_pred HHHHHHHHHhhCceEEEEeecccccHHHHhhh---c--------cchHHHHHHHHhcCC---C-------------CCCc
Confidence 999998876 3689999999887654211000 0 000111222222211 0 1134
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCc
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKG 317 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~ 317 (393)
..+|+|+++..++..... .++.|++.++.+
T Consensus 199 ~~~dva~~~~~l~~~~~~-~G~~~~v~gg~~ 228 (230)
T PRK07041 199 QPEDVANAILFLAANGFT-TGSTVLVDGGHA 228 (230)
T ss_pred CHHHHHHHHHHHhcCCCc-CCcEEEeCCCee
Confidence 679999999999885433 357999887754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=152.98 Aligned_cols=240 Identities=13% Similarity=0.055 Sum_probs=154.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|.||.+++++|+++|++|++++|.........+.+... ...++.++.+|+++++++.+++++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE--SNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 34589999999999999999999999999999988543222222222221 124688999999999998887754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHH----HHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVI----LEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++||+||...... ...+....+++|+.+...+ +..+++.+..++|++||...+... .
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~-----------~ 152 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPI-----------P 152 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCC-----------C
Confidence 36999999999754321 2234556777887765554 455555566799999997654221 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+-.+........ ... ..+...........+..|
T Consensus 153 ~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~p------ 222 (263)
T PRK08339 153 NIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQD--RAK--REGKSVEEALQEYAKPIP------ 222 (263)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHh--hhh--ccCCCHHHHHHHHhccCC------
Confidence 2467999999999999888776 579999999999865421000000 000 000000111111111111
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
...+...+|+++++++++.... ...++++.+.++...|
T Consensus 223 ----------~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ----------LGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ----------cccCcCHHHHHHHHHHHhcchhcCccCceEEECCCcccc
Confidence 1235678999999999887432 2344677776655444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=154.61 Aligned_cols=225 Identities=17% Similarity=0.109 Sum_probs=151.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|.||++++++|+++|++|++++|...... +...++ ..++.++.+|+.+.+++.++++.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA---AVAASL---GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999988543222 111222 24688999999999998887754
Q ss_pred -CCCcEEEEcccccCcc---CCccChHHHHHHHHHHHHHHHHHHHh---cCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG---ESTLEPLRYYHNITSNTLVILEAMAA---HKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
..+|+|||+||..... .........+++|+.++..+++.+.. .+..++|++||...+... ..
T Consensus 78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------~~ 146 (261)
T PRK08265 78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ-----------TG 146 (261)
T ss_pred hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC-----------CC
Confidence 3689999999965322 22334556788999998888877653 234589999996554221 12
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++.+++||.+..+-...... .- ...........
T Consensus 147 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~-----------~~-~~~~~~~~~~~-------- 206 (261)
T PRK08265 147 RWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSG-----------GD-RAKADRVAAPF-------- 206 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcc-----------cc-hhHHHHhhccc--------
Confidence 568999999999999988766 58999999999876542110000 00 00001111000
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
.....+...+|+|+++.+++.... .-.++.+.+.++
T Consensus 207 -------~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 207 -------HLLGRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred -------CCCCCccCHHHHHHHHHHHcCccccCccCcEEEECCC
Confidence 011224678999999999987532 224467777555
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-18 Score=153.14 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=130.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++|+||||+|+||++++++|.++|++|++++|.......... ++.....++.++.+|+.+.+++.++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~---~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA---EIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 445899999999999999999999999999999885332222222 2212234688999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC--------CcEEEEeecceeecCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK--------VKTLIYSSTCATYGEPDKM 185 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~--------~~~~V~~SS~~vyg~~~~~ 185 (393)
.++|+|||+|+...... ...+....++.|+.++..+++.+.. .. ..++|++||...+..
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---- 159 (258)
T PRK06949 84 AGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV---- 159 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC----
Confidence 36999999999754322 1234556788999999888877652 21 258999999766532
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 186 PITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 186 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
..+..+|+.+|...+.+++.++.+ .++++++++||.++++.
T Consensus 160 -------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~ 203 (258)
T PRK06949 160 -------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEI 203 (258)
T ss_pred -------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCc
Confidence 223678999999999999888776 58999999999999875
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=158.96 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=128.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++|+||||||.||.+++++|.++|++|++++|.........+.+. .....+.++.+|++|.+++.++++.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~---~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR---ALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 455899999999999999999999999999999885432222222222 2235677889999999999887754
Q ss_pred -CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||........ ......+++|+.++.++.+++ ++.+..++|++||...+...+
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p---------- 151 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQP---------- 151 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCC----------
Confidence 4699999999976443222 233457889999988876665 444556899999976553321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~ 233 (393)
....|+.+|...+.+.+.++.+ .+++++.+.|+.+..|.
T Consensus 152 -~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~ 194 (330)
T PRK06139 152 -YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPG 194 (330)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcc
Confidence 2568999999888777776654 37999999999998774
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=152.90 Aligned_cols=171 Identities=14% Similarity=0.121 Sum_probs=125.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC-CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
+|+||||+|+||.++++.|+++|++|++++|.... .....+.+.... ....+..+.+|+.+.+++.+++++ .+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAH-GEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999885222 112222221110 012345688999999998877654 36
Q ss_pred CcEEEEcccccCccCC----ccChHHHHHHHHH----HHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGES----TLEPLRYYHNITS----NTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~----~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|+|||+||....... ..+....+++|+. .+..+++.+++.+.+++|++||...+.... ..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~-----------~~ 148 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEP-----------DY 148 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCC-----------CC
Confidence 8999999997643221 1233456778887 778888888877778999999987765432 24
Q ss_pred ChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~ 233 (393)
..|+.+|...+.+.+.++.+ .+++++.++|+.+.++.
T Consensus 149 ~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~ 190 (251)
T PRK07069 149 TAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGI 190 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcc
Confidence 57999999999999887665 24899999999998874
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-18 Score=153.97 Aligned_cols=169 Identities=21% Similarity=0.198 Sum_probs=124.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++++||||+|+||.+++++|+++|++|+++.|...... +..+++......+.++.+|+.+++++.+++++ ..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAK---ETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999999987532222 22222222234688899999999998887654 36
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+|+...... ........+++|+.++..+++++.. .+ ..++|++||.......+ .
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----------~ 146 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNP-----------I 146 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCC-----------C
Confidence 899999999754321 2233456788999988877666543 33 25899999855432211 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+++.++.+ .++++.+++||.+..+
T Consensus 147 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~ 186 (254)
T TIGR02415 147 LSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTP 186 (254)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCh
Confidence 678999999999999887666 4799999999988654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=150.43 Aligned_cols=226 Identities=14% Similarity=0.117 Sum_probs=151.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+|+++||||+|.||+++++.|+++|++|++++|.........+.+.. ...++.++.+|+++++++.+++++ .
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ---FPGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 37899999999999999999999999999998854322222222221 135788999999999998887754 3
Q ss_pred CCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.+|+|||+||..... .........+++|+.++.++++++.. .+ ..++|++||...+... .
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------~ 146 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG-----------P 146 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC-----------C
Confidence 689999999854321 12233466889999999999888843 22 3589999986443211 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
...+|+.+|...+.+.+.++.+ +|+++..++||.+..+...... ...+...+.+.+..+
T Consensus 147 ~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~------------~~~~~~~~~~~~~~~----- 209 (252)
T PRK07677 147 GVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL------------WESEEAAKRTIQSVP----- 209 (252)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccc------------cCCHHHHHHHhccCC-----
Confidence 2457999999999999886665 4899999999998753211000 001122222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+...+|+++++..++... ....+..+.+.++.
T Consensus 210 -----------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 210 -----------LGRLGTPEEIAGLAYFLLSDEAAYINGTCITMDGGQ 245 (252)
T ss_pred -----------CCCCCCHHHHHHHHHHHcCccccccCCCEEEECCCe
Confidence 112567899999998887643 22344677775553
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-18 Score=153.35 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=146.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||.+++++|+++|++|++++|....... ...++ ...++.+|+.+.+++.++++.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~---~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA---AADEV-----GGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH---HHHHc-----CCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999875322111 11111 236788999999999888764
Q ss_pred -CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecc-eeecCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTC-ATYGEPDKMPITES 190 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~-~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||..... .........+++|+.++..+++.+. +.+..++|++||. ++++..
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~-------- 148 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA-------- 148 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC--------
Confidence 3689999999875321 1112345678899998877766653 3455689998885 344432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++.....+. .-.....+ .....+
T Consensus 149 ---~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~-----------~~~~~~~~-~~~~~~-- 211 (255)
T PRK06057 149 ---TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFA-----------KDPERAAR-RLVHVP-- 211 (255)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhcc-----------CCHHHHHH-HHhcCC--
Confidence 12457999998877777755443 58999999999998874221100 00001001 011111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.+++|+++++..++.... ...++.+.+.++
T Consensus 212 --------------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 212 --------------MGRFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred --------------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 1247889999999988876432 223467766544
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=150.28 Aligned_cols=224 Identities=15% Similarity=0.118 Sum_probs=153.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|.||++++++|+++|++|++++|.. .....+.++. ...++.++.+|+.+.+++.+++++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEA---LGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHH---cCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999987632 1222222222 134688899999999999888764
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ...+....+++|+.++..+.+.+.. .+ ..++|++||...+....
T Consensus 81 ~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--------- 151 (251)
T PRK12481 81 MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI--------- 151 (251)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC---------
Confidence 36999999999764322 2234556788999988877776543 32 35899999977664322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|+++..++||.+-.+..... .-............|
T Consensus 152 --~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~p---- 212 (251)
T PRK12481 152 --RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAAL-------------RADTARNEAILERIP---- 212 (251)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhc-------------ccChHHHHHHHhcCC----
Confidence 2357999999999999988775 689999999999865421100 000111111222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++++.+++... ..-.++.+.+.++
T Consensus 213 ------------~~~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 213 ------------ASRWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred ------------CCCCcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 112567899999999988742 2233456666443
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=148.50 Aligned_cols=211 Identities=18% Similarity=0.110 Sum_probs=153.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++++|||||+.||..+++.|.++|++|+.+.|+......+.+.++... ...++++.+|+++++++..+..+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~--~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT--GVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh--CceEEEEECcCCChhHHHHHHHHHHh
Confidence 4567899999999999999999999999999999886554444444444332 24678999999999988876643
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHH----HHHHHhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVI----LEAMAAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
..+|++|||||...+.. ...+....+++|+.+...+ +..+.+.+..++|.++|.+.|-..+.
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~-------- 152 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPY-------- 152 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcc--------
Confidence 37999999999876542 3344566888998875554 55556667779999999887744322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
...|+.||+..-.+...+..+ .|++++.|.||.+.-.- ... ++.. ..
T Consensus 153 ---~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f-------------------~~~------~~~~-~~- 202 (265)
T COG0300 153 ---MAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF-------------------FDA------KGSD-VY- 202 (265)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-------------------ccc------cccc-cc-
Confidence 568999999988877776665 68999999998876542 110 0000 00
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
.....+-++..+|+|++.+..+...+.
T Consensus 203 --------~~~~~~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 203 --------LLSPGELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred --------cccchhhccCHHHHHHHHHHHHhcCCc
Confidence 011124478899999999999997543
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=150.23 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=123.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCC-CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRG-NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..++|+||||+|+||.+++++|+++| ++|++++|.... .....+.+.... ..+++++.+|+.|.+++.++++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCCChHHHHHHHHHHHh
Confidence 34789999999999999999999995 899999886543 222233333221 13688999999999987665543
Q ss_pred -CCCcEEEEcccccCccC-CccCh---HHHHHHHHHHHHH----HHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE-STLEP---LRYYHNITSNTLV----ILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~-~~~~~---~~~~~~n~~~~~~----ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||++|...... ...+. ...+++|+.++.. +++.+++.+..++|++||...+.. .
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~-----------~ 153 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERV-----------R 153 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCC-----------C
Confidence 37999999998753321 11121 2358899887765 667777777789999999754321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+...|+.||+....+.+.++.+ .++++++++||.+..+
T Consensus 154 ~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~ 195 (253)
T PRK07904 154 RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR 195 (253)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence 23457999999998776665433 6899999999998764
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=149.18 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=122.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
|++|+||||+|+||.++++.|+++|++|+++.+... ........++.....++.++.+|+.+.+++.+++++ .
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDA--AAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999987654222 111122222222234688999999999998877653 3
Q ss_pred CCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHh-cC------CcEEEEeecceee-cCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAA-HK------VKTLIYSSTCATY-GEPDKMPITES 190 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~-~~------~~~~V~~SS~~vy-g~~~~~~~~E~ 190 (393)
++|+|||+||...... ...+....+++|+.++..+++.+.. .. -.++|++||...+ +...
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------- 152 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN------- 152 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC-------
Confidence 6999999999753321 1223345688999998888754432 21 2369999986543 3211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
+...|+.+|...+.+++.++.+ .+++++++|||.+..+.
T Consensus 153 ----~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~ 194 (248)
T PRK06947 153 ----EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEI 194 (248)
T ss_pred ----CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccc
Confidence 1347999999999999888776 48999999999998763
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=141.15 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=147.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
.|.++|||||+.||.++++.|.+.|++|+++.|.....+.+.. ++ .. ..+.++..|++|.+++..+++. .
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~---~~-~~-~~~~~~~~DVtD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALAD---EI-GA-GAALALALDVTDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHH---hh-cc-CceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence 3789999999999999999999999999999875433332222 22 11 4688999999999987666543 5
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|++|||||...... ...++...+++|+.|..+...+ +.+.+...+|.+||.+..- +...
T Consensus 81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~-----------~y~~ 149 (246)
T COG4221 81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY-----------PYPG 149 (246)
T ss_pred cccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc-----------cCCC
Confidence 6999999999774432 2345677888999887776555 4566666999999965321 1222
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
.+.|+.+|+....+...+..+ .+++++.+-||.+-...-.... . . . ...-.+.+.
T Consensus 150 ~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~----~-----~-g-~~~~~~~~y----------- 207 (246)
T COG4221 150 GAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVR----F-----E-G-DDERADKVY----------- 207 (246)
T ss_pred CccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceeccccc----C-----C-c-hhhhHHHHh-----------
Confidence 578999999999998887666 5899999999998543211000 0 0 0 000011111
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPG 305 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~ 305 (393)
.....+..+|+|++++++++.|...
T Consensus 208 --------~~~~~l~p~dIA~~V~~~~~~P~~v 232 (246)
T COG4221 208 --------KGGTALTPEDIAEAVLFAATQPQHV 232 (246)
T ss_pred --------ccCCCCCHHHHHHHHHHHHhCCCcc
Confidence 1123688999999999999987654
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-17 Score=148.98 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=127.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchh----hhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGA----VKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
+.+++++||||+|+||.++++.|+++|++|++++|........ .+...++.....++.++.+|+++.+++.+++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4457999999999999999999999999999999865432111 111112222235688899999999999887754
Q ss_pred -----CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||........ .+....+++|+.++.++++++... +-.++|++||.....
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~--------- 154 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD--------- 154 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc---------
Confidence 2799999999975433222 234557889999999999988632 334788988843211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNV 229 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v 229 (393)
.....+...|+.+|.+.|.+++.++.+ .+++++.+.|+.+
T Consensus 155 ~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~ 197 (273)
T PRK08278 155 PKWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTT 197 (273)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCc
Confidence 011135679999999999999998876 4799999999843
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=150.19 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=152.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++++||||+|+||.+++++|+++|++|++++|....... ...++.....++.++.+|+.+++++.+++++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEK---LADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH---HHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999998875432222 2222222234678899999999998887754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||....... .......+++|+.++..+++++.. .+ ..++|++||....-.. .
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------~ 154 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN---------V 154 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---------C
Confidence 379999999997643322 223445678999998888887753 22 2478999885432110 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
+.....|+.+|...+.+.+.++.+ .|+++..++||.+-.+... ... ..........|
T Consensus 155 ~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~---------------~~~-~~~~~~~~~~~---- 214 (253)
T PRK05867 155 PQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVE---------------PYT-EYQPLWEPKIP---- 214 (253)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccc---------------cch-HHHHHHHhcCC----
Confidence 112468999999999999998776 5899999999998665311 111 11112222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+|+++++++.... .-.++++.+.++
T Consensus 215 ------------~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 215 ------------LGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 1125678999999999887432 234467777555
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=145.73 Aligned_cols=214 Identities=16% Similarity=0.146 Sum_probs=146.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++++||||+|+||++++++|+++|++|++++|.... ..+.+.. .++.++.+|+.+.+++.+++++ .+
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP---AIDGLRQ-----AGAQCIQADFSTNAGIMAFIDELKQHTDG 74 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh---HHHHHHH-----cCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 689999999999999999999999999999885432 1222222 2478899999999998877655 35
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC--CcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK--VKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
+|++||+||...... ...+....+++|+.++..+.+.+.. .+ ..++|++||...... ..
T Consensus 75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~-----------~~ 143 (236)
T PRK06483 75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKG-----------SD 143 (236)
T ss_pred ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccC-----------CC
Confidence 999999999753321 1234566788999888776655543 33 358999998543311 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
....|+.+|...|.+++.++.+ .++++..++||.+.-+..+ ............+ +.
T Consensus 144 ~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~-----------------~~~~~~~~~~~~~-~~---- 201 (236)
T PRK06483 144 KHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD-----------------DAAYRQKALAKSL-LK---- 201 (236)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC-----------------CHHHHHHHhccCc-cc----
Confidence 3568999999999999998887 3599999999987432100 0111111222222 11
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK 316 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~ 316 (393)
-+...+|+++++.+++... ...++++.+.++.
T Consensus 202 -----------~~~~~~~va~~~~~l~~~~-~~~G~~i~vdgg~ 233 (236)
T PRK06483 202 -----------IEPGEEEIIDLVDYLLTSC-YVTGRSLPVDGGR 233 (236)
T ss_pred -----------cCCCHHHHHHHHHHHhcCC-CcCCcEEEeCccc
Confidence 1346899999999998733 3345677776553
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-17 Score=149.76 Aligned_cols=172 Identities=18% Similarity=0.073 Sum_probs=127.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++|+||||+|+||.+++++|+++|++|++++|...........+.. ...++.++.+|+++.+++.+++++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ---AGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4457999999999999999999999999999998854322222222222 224567899999999998887755
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+|+..... ....+....+++|+.++.++++++... ...++|++||...+.. ..
T Consensus 84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~-----------~~ 152 (264)
T PRK07576 84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVP-----------MP 152 (264)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccC-----------CC
Confidence 3689999999854221 122334557889999999998887642 2258999999654421 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...|.+++.++.+ .|++++.++|+.+.+.
T Consensus 153 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t 193 (264)
T PRK07576 153 MQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGT 193 (264)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCc
Confidence 3578999999999999988765 5799999999988753
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-17 Score=146.84 Aligned_cols=170 Identities=13% Similarity=0.113 Sum_probs=130.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|.||.+++++|.++|++|+++++.. .....+.+... ...+.++.+|+.+.+++.+++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTAL---GRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999886632 22222333322 34678899999999999888765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ...+....+++|+.++..+++++... + -.++|++||...+.....
T Consensus 83 ~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 154 (253)
T PRK08993 83 FGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIR-------- 154 (253)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCC--------
Confidence 37999999999754321 23456678889999999888876532 2 258999999877643221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...|.+.+.++.+ .|+++..++||.+-.+
T Consensus 155 ---~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~ 194 (253)
T PRK08993 155 ---VPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATN 194 (253)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCc
Confidence 358999999999999988776 5899999999999765
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=156.17 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=136.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++++||||||+||.+++++|+++|++|++++|.........+.+.... ....+.++.+|+.+.+++.+++++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885443333333333221 124688999999999999887754
Q ss_pred --CCCcEEEEcccccCcc---CCccChHHHHHHHHHHHHHHHHHHHh---cCCcEEEEeecceeec-CCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG---ESTLEPLRYYHNITSNTLVILEAMAA---HKVKTLIYSSTCATYG-EPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~~V~~SS~~vyg-~~~~~~~~E~~~~ 193 (393)
.++|++||+||..... ......+..+.+|+.+...+.+.+.. .+..++|++||...+. ......+.++.+.
T Consensus 90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~~ 169 (313)
T PRK05854 90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERSY 169 (313)
T ss_pred hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccccC
Confidence 3699999999976432 12345666889999997776666542 2335899999976543 2222334444555
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~ 232 (393)
.+...|+.||.+.+.+.+.++.+ .|+.+..+.||.|-.+
T Consensus 170 ~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 170 AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 66788999999999999988753 4799999999998654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=152.01 Aligned_cols=171 Identities=19% Similarity=0.118 Sum_probs=128.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|.||.++++.|.++|++|++++|.... ..+...++. ....+..+.+|++|.+++.+++++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---l~~~~~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAE---LAALAAELG-GDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999874322 222222221 123566677999999998887654
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||....... ..+....+++|+.++.++++.+... ...++|++||...+...+
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 151 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAP----------- 151 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCC-----------
Confidence 468999999997643221 2234557889999999988887532 235899999977664322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...+.+.+.++.+ .|+++.++.||.+..+
T Consensus 152 ~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~ 192 (296)
T PRK05872 152 GMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTD 192 (296)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccch
Confidence 2568999999999999887654 6899999999998765
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-17 Score=149.27 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=125.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+..++++||||+|+||.+++++|+++|++|+++++...... ..++.++.+|+.+++++.++++.
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ------------HENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999887543221 14678899999999999887754
Q ss_pred -CCCcEEEEcccccCcc-------------CCccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-------------ESTLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDK 184 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-------------~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~ 184 (393)
..+|+|||+||..... ....+....+++|+.++..+++++... +..++|++||...+...
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 152 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS-- 152 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC--
Confidence 3689999999965321 122334557889999999988887643 34589999997665322
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI 230 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~ 230 (393)
.....|+.+|...+.+++.++.+ .|+++.+++||.+-
T Consensus 153 ---------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 153 ---------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 23578999999999999888766 58999999999874
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=149.54 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=125.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++++||||+|+||.+++++|+++|++|++.++..... ..+...++.....++.++.+|+.+.+++.++++.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALD--ASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhH--HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 345668999999999999999999999999999987643221 1122222222235688899999999998887754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc-----------CCcEEEEeecceeecCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH-----------KVKTLIYSSTCATYGEPDKM 185 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~~V~~SS~~vyg~~~~~ 185 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... ...++|++||...+....
T Consensus 86 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 163 (306)
T PRK07792 86 GLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPV-- 163 (306)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCC--
Confidence 46999999999764321 22345567889999999998876421 124899999966543221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeec
Q 016208 186 PITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYF 227 (393)
Q Consensus 186 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~ 227 (393)
....|+.+|...+.+.+.++.+ .|+++..+.|+
T Consensus 164 ---------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 164 ---------GQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 2457999999999999888775 68999999986
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=145.20 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=149.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|.||.+++++|.++|+.|+++.|.... .......++.....++.++.+|+++.+++.++++.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE--EANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999887764321 11122222222234677899999999998877654
Q ss_pred -CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHH----HHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVI----LEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~l----l~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||........ ......+++|+.++..+ ++.+.+.+ -.++|++||...+ .+
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~-----------~~ 151 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ-----------IP 151 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc-----------CC
Confidence 3689999999975432222 23445678998776554 44555544 3589999995432 22
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|++++.++||.+..+.....+ ..+..........+
T Consensus 152 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~-------------~~~~~~~~~~~~~~---- 214 (261)
T PRK08936 152 WPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKF-------------ADPKQRADVESMIP---- 214 (261)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCcccccc-------------CCHHHHHHHHhcCC----
Confidence 334678999998888888877655 5899999999999876422110 01111122222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
...+...+|+++++.+++..... ..+..+.+.++
T Consensus 215 ------------~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g 249 (261)
T PRK08936 215 ------------MGYIGKPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_pred ------------CCCCcCHHHHHHHHHHHcCcccCCccCcEEEECCC
Confidence 12356789999999998874322 23345655444
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-17 Score=148.53 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=150.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||.+++++|+++|++|++++|...... +...++ ..++.++.+|+.+.+++.+++++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLA---SLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999987532221 111121 24678899999999988877654
Q ss_pred -CCCcEEEEcccccCcc-C---Cc-cC----hHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-E---ST-LE----PLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-~---~~-~~----~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
..+|++||+||+.... . .. .. ....+++|+.++..+++++... ...++|++||...+...
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 150 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG------- 150 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-------
Confidence 3799999999975321 1 11 11 3446778999988888777532 22579999997765332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCC-CCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGR-LGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.+...|+.+|...+.+++.++.+ .++++..+.||.+.-+-.... ++.... .. ...+..........|
T Consensus 151 ----~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~p- 220 (263)
T PRK06200 151 ----GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGET-SI----SDSPGLADMIAAITP- 220 (263)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCc-cc----ccccchhHHhhcCCC-
Confidence 22457999999999999998876 359999999999865521100 000000 00 000111112222111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-C-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-K-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~-~~~~~~yni~~~ 315 (393)
..-+...+|+++++++++... . ...++++.+.++
T Consensus 221 ---------------~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 221 ---------------LQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred ---------------CCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 123667899999999988744 2 223467767544
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-17 Score=146.95 Aligned_cols=174 Identities=16% Similarity=0.077 Sum_probs=125.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++++||||+|+||.+++++|+++|++|++++|.........+.+.+... ..++.++.+|++|.+++.+++++
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-GARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4458999999999999999999999999999998864433333333322111 13677899999999998877654
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..+|+|||+||....... .......+++|+.+...+++. +++.+..++|++||...+...
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 153 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE----------- 153 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC-----------
Confidence 368999999997533221 223445677787765555544 444555699999997654322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.....|+.+|...+.+.+.++.+ .|++++.++||.+-.+
T Consensus 154 ~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 195 (265)
T PRK07062 154 PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESG 195 (265)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccc
Confidence 12468999999998888877665 5899999999998665
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=169.03 Aligned_cols=241 Identities=18% Similarity=0.164 Sum_probs=152.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++||||||+|+||++++++|+++|++|++++|...........+.... ....+..+.+|+++.+++.+++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~-~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF-GAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999885432222222221111 113567899999999999988864
Q ss_pred -CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHH----HHHhcC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILE----AMAAHK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~----~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||........ ......+++|+.+...+.. .+++.+ ..++|++||...+...
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~---------- 560 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG---------- 560 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC----------
Confidence 2799999999975432222 2234566788877666553 344443 2489999996543221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc-CCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI-GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.....|+.+|...+.+++.++.+ .|+++..++|+.|+ |.+.... ..........+.-...+.....
T Consensus 561 -~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 630 (676)
T TIGR02632 561 -KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDG--EWREERAAAYGIPADELEEHYA------- 630 (676)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccc--cchhhhhhcccCChHHHHHHHH-------
Confidence 12578999999999999998876 47999999999887 3321000 0000000000000001111111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
.......+++.+|+|+++.+++... ....+.++++.++..
T Consensus 631 ---------~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 ---------KRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGVP 671 (676)
T ss_pred ---------hcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCch
Confidence 1222345789999999999987643 232357888876643
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=144.33 Aligned_cols=227 Identities=15% Similarity=0.070 Sum_probs=152.8
Q ss_pred CCCCcEEEEEcCCC-hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAG-YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
.+.+++++||||+| .||.++++.|+++|++|++++|.........+.+..... ..++.++.+|+.+++++.++++.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHHH
Confidence 34568999999998 699999999999999999988754332222222222111 13678899999999998877754
Q ss_pred ---CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||....... .......+++|+.+...+++.+.. .+ ..++|++||...+..
T Consensus 93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~--------- 163 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRA--------- 163 (262)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC---------
Confidence 378999999996532211 233455677999998888777643 23 357888888543311
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++|+.+..+.... ..............+
T Consensus 164 --~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~--------------~~~~~~~~~~~~~~~-- 225 (262)
T PRK07831 164 --QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAK--------------VTSAELLDELAAREA-- 225 (262)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccc--------------ccCHHHHHHHHhcCC--
Confidence 124568999999999999998876 68999999999998763210 001122222222222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGT 314 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~ 314 (393)
..-+...+|+++++++++.... ...|+++.+..
T Consensus 226 --------------~~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 226 --------------FGRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred --------------CCCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 1225678999999999887532 22345665543
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=147.01 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=146.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
.+.+++|+||||+|.||.+++++|+++|++|+++.|.... .......++.. ....+.++.+|+++++++.++++.
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE--EANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3556899999999999999999999999999887653321 11111122211 124678999999999998887765
Q ss_pred ---CCCcEEEEcccccCc------cC----CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV------GE----STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKM 185 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~------~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~ 185 (393)
.++|++||+||.... .. ........+++|+.+...+.+. +++.+..++|++||...+..
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 158 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVY---- 158 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccC----
Confidence 368999999986421 11 1223344666777765554444 44444568999999643311
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC
Q 016208 186 PITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262 (393)
Q Consensus 186 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
......|+.+|...+.+.+.++.+ .|+++..+.||.+--+.... + . .. .........
T Consensus 159 -------~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~-~---~--------~~-~~~~~~~~~ 218 (260)
T PRK08416 159 -------IENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKA-F---T--------NY-EEVKAKTEE 218 (260)
T ss_pred -------CCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhh-c---c--------CC-HHHHHHHHh
Confidence 112458999999999999998887 48999999998875432100 0 0 00 111111111
Q ss_pred CCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 263 ~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
..| ...+..++|+++++++++.... ...++.+.+.++
T Consensus 219 ~~~----------------~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 219 LSP----------------LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred cCC----------------CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 111 1125679999999999887432 223467766544
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=151.18 Aligned_cols=165 Identities=16% Similarity=0.070 Sum_probs=123.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh------
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------ 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------ 122 (393)
||+|+||||||+||++++++|+++|++|++++|..... . .. ....++.++.+|+.+.+++.+++.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~---~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 72 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L---AA---AAGERLAEVELDLSDAAAAAAWLAGDLLAAF 72 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h---hh---ccCCeEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999998854321 1 11 1124688899999999998885543
Q ss_pred ---CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
..+|++||+|+...... ........+++|+.++..+.+.+. +.+.+++|++||...+..
T Consensus 73 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 143 (243)
T PRK07023 73 VDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNA--------- 143 (243)
T ss_pred ccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCC---------
Confidence 26899999999754311 122345677899998666555543 444569999999766532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGS 232 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~ 232 (393)
..+...|+.+|...|.+++.++.+ .++++.+++||.+-.+
T Consensus 144 --~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 144 --YAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 234678999999999999988764 6899999999987443
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=146.20 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=125.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----C
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----N 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~ 123 (393)
.+++|+||||+|+||.+++++|+++|++|++++|...... ....++ ..+.++.++.+|+.|.+++.++++. .
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE---ALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 4579999999999999999999999999999988533222 222222 2235788999999999988877643 4
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.+|+|||+||...... ........+++|+.++.++++.+.. .+..++|++||...+... ..
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-----------~~ 148 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY-----------PG 148 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC-----------CC
Confidence 6899999999754321 1223455778999999988888753 344679998885443221 12
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+++.++.+ .+++++.+.||.+..+
T Consensus 149 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~ 188 (263)
T PRK09072 149 YASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTA 188 (263)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccc
Confidence 467999999999888887765 5799999999887654
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=145.41 Aligned_cols=224 Identities=18% Similarity=0.198 Sum_probs=165.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+||||||||++|++++++|+++|++|+++.|........ . .++++..+|+.++..+...+ .+.|.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~-------~---~~v~~~~~d~~~~~~l~~a~--~G~~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAAL-------A---GGVEVVLGDLRDPKSLVAGA--KGVDGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhh-------c---CCcEEEEeccCCHhHHHHHh--ccccEEE
Confidence 5899999999999999999999999999998865433211 1 58999999999999999999 8999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
++.+... ... ...........+..+.+. .++++++++|...... .....|..+|..+|+.
T Consensus 69 ~i~~~~~-~~~-----~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~-------------~~~~~~~~~~~~~e~~ 128 (275)
T COG0702 69 LISGLLD-GSD-----AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA-------------ASPSALARAKAAVEAA 128 (275)
T ss_pred EEecccc-ccc-----chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC-------------CCccHHHHHHHHHHHH
Confidence 9988653 211 112222333334444443 3477888888744321 2357899999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+.. .|++++++|+..+|.... ... .......+.+ ....+ .+ ...++.++
T Consensus 129 l~~----sg~~~t~lr~~~~~~~~~----------------~~~--~~~~~~~~~~-~~~~~------~~--~~~~i~~~ 177 (275)
T COG0702 129 LRS----SGIPYTTLRRAAFYLGAG----------------AAF--IEAAEAAGLP-VIPRG------IG--RLSPIAVD 177 (275)
T ss_pred HHh----cCCCeEEEecCeeeeccc----------------hhH--HHHHHhhCCc-eecCC------CC--ceeeeEHH
Confidence 998 899999999777766431 111 3333334433 22222 23 67899999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV 337 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~ 337 (393)
|++.++..++..+.. .+++|.+++++..+..++.+.+....|++...
T Consensus 178 d~a~~~~~~l~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 178 DVAEALAAALDAPAT-AGRTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred HHHHHHHHHhcCCcc-cCcEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 999999999987653 34799999889999999999999999998876
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=143.66 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=122.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC--HHHHHHHHh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD--AKAVNKIFA--- 121 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~--- 121 (393)
+.+++|+||||+|+||.++++.|+++|++|++++|...........+... ....+.++.+|+.+ .+++.++++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA--GHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc--CCCCcceEEeeecccchHHHHHHHHHHH
Confidence 45589999999999999999999999999999988653322222222111 11356778899875 334443321
Q ss_pred h---CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCC
Q 016208 122 E---NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 122 ~---~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
+ ..+|+|||+||.... . ....+....+++|+.++.++++.+.. .+..++|++||....
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~---------- 151 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE---------- 151 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc----------
Confidence 1 368999999996421 1 11223445788999998888777643 345689999985432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhC----CCcEEEEeeccccCCC
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTT----NMAVMILRYFNVIGSD 233 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~ 233 (393)
.+......|+.+|+..+.+++.++.+. ++++++++||.|.+|.
T Consensus 152 -~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~ 198 (239)
T PRK08703 152 -TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQ 198 (239)
T ss_pred -cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcc
Confidence 122235689999999999998887763 6999999999999874
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=144.36 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=123.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC--CHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG--DAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~~~~-- 122 (393)
...++|+||||+|+||.+++++|++.|++|++++|.........+.+... ...++.++.+|+. +.+++.++++.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA--GGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 45589999999999999999999999999999988543222222222221 1235677888885 55555444322
Q ss_pred ---CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+|+.... ..........+++|+.++.++++++ .+.+.+++|++||.......
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~-------- 159 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGR-------- 159 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCC--------
Confidence 479999999987532 1122345668889999988887766 44567799999996543221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.....|+.+|...|.+++.++.+ .++++++++|+.+-.+
T Consensus 160 ---~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~ 201 (247)
T PRK08945 160 ---ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA 201 (247)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCc
Confidence 12458999999999999887766 3789999999887654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=143.27 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=123.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
++++|+||||+|+||.++++.|.++|++|++++|...... +...++.. ..+++++.+|+.+.+++.+++++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLK---RMKKTLSK-YGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999988543221 11112111 13678899999999998877654
Q ss_pred CCCcEEEEcccccCccCC--ccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCCh
Q 016208 123 NAFDAVMHFAAVAYVGES--TLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPINP 198 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~--~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~ 198 (393)
.++|++||+++....... .......++.|+.+...+++.+... ...++|++||...... +..+...
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~----------~~~~~~~ 149 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK----------ASPDQLS 149 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc----------CCCCchH
Confidence 347999999986432111 1223445778888887777776543 2247999998644211 1224567
Q ss_pred HHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 199 YGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
|+.+|...+.+++.++.. .+++++++||+.++++.
T Consensus 150 Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~ 187 (238)
T PRK05786 150 YAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDF 187 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCC
Confidence 999999999888887765 48999999999999863
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=142.32 Aligned_cols=169 Identities=18% Similarity=0.145 Sum_probs=124.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CCCc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NAFD 126 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~d 126 (393)
|+||||+|+||.+++++|.++|++|++++|..... ......++.....++.++.+|+.+.+++.+++++ ..+|
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~ 78 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSD--AESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYY 78 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999999999987643221 1122222222235688999999999998877654 3689
Q ss_pred EEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH-----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 127 AVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 127 ~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
++||+||...... ...+....++.|+.++.++++++. +.+..++|++||...+... .+..
T Consensus 79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~-----------~~~~ 147 (239)
T TIGR01831 79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN-----------RGQV 147 (239)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC-----------CCCc
Confidence 9999999753321 234556688899999999988752 2344689999996543221 1246
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
.|+.+|...+.+.+.++.+ .|++++.++|+.+.++.
T Consensus 148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 186 (239)
T TIGR01831 148 NYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEM 186 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCcccc
Confidence 7999999998888877665 58999999999987663
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=141.92 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=124.5
Q ss_pred CCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCC--C------CCchhhhhhhhhcCCCCccEEEEccCCCHHHH
Q 016208 47 PGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLS--R------GNMGAVKVLQELFPQPGQLQFIYADLGDAKAV 116 (393)
Q Consensus 47 ~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~--~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 116 (393)
..+++|+||||+| .||.+++++|+++|++|++++|.. + ......+...++......+.++.+|+++.+++
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 4458999999995 799999999999999999875421 1 11111111122222234678899999999998
Q ss_pred HHHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCC
Q 016208 117 NKIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPD 183 (393)
Q Consensus 117 ~~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~ 183 (393)
.++++. ..+|+|||+||...... ........+++|+.+...+... +.+.+..++|++||.....
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--- 160 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG--- 160 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC---
Confidence 877754 35899999999753321 2223455788999987777544 3434445899999965432
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 184 KMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 184 ~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+..+...|+.+|...+.+.+.++.+ .+++++.++||.+-.+
T Consensus 161 --------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~ 204 (256)
T PRK12859 161 --------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTG 204 (256)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCC
Confidence 2234679999999999998887765 6899999999988654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=143.17 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=150.6
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++++||||+ +.||.+++++|+++|++|++++|.. ...+.+.++. ...+.++.+|+++++++.++++.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~----~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND----RMKKSLQKLV--DEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch----HHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999 7999999999999999999987742 1222233332 13678899999999998877654
Q ss_pred ---CCCcEEEEcccccCc----c----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV----G----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++||+||.... . ....+....+++|+.+...+.+.+... ...++|++||......
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~-------- 150 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERA-------- 150 (252)
T ss_pred HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcccc--------
Confidence 469999999997532 1 112234557778998888887776543 2258999998543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
......|+.+|...+.+.+.++.+ .|+++..|.||.|-.+-.... .-.....+...+..|
T Consensus 151 ---~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p- 213 (252)
T PRK06079 151 ---IPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGI-------------KGHKDLLKESDSRTV- 213 (252)
T ss_pred ---CCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccC-------------CChHHHHHHHHhcCc-
Confidence 123568999999999999988876 589999999999865421100 000112222222222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++++.+++... ....++++.+.++
T Consensus 214 ---------------~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 248 (252)
T PRK06079 214 ---------------DGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKG 248 (252)
T ss_pred ---------------ccCCCCHHHHHHHHHHHhCcccccccccEEEeCCc
Confidence 112567899999999998753 2223456666443
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=147.76 Aligned_cols=168 Identities=16% Similarity=0.120 Sum_probs=120.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-----
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN----- 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----- 123 (393)
|++|+||||+|+||++++++|+++|++|++++|..... .+.+... ...++.++.+|+++.+++..++++.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~---~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKE---LTKLAEQ--YNSNLTFHSLDLQDVHELETNFNEILSSIQ 75 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHH---HHHHHhc--cCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999998854211 1111111 1246889999999999988877541
Q ss_pred ----CCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHH----HHhc-CCcEEEEeecceeecCCCCCCCCC
Q 016208 124 ----AFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEA----MAAH-KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 124 ----~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~----~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
+.+++||+||...+. .........+++|+.+...+++. +++. +.+++|++||...+.
T Consensus 76 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 146 (251)
T PRK06924 76 EDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN--------- 146 (251)
T ss_pred cccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC---------
Confidence 122899999875321 12233445677788875555544 4443 345899999965532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCC
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGS 232 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~ 232 (393)
+..+...|+.+|...+.+.+.++.+ .++++..++||.+-.+
T Consensus 147 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 147 --PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTN 192 (251)
T ss_pred --CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccH
Confidence 2334678999999999999988765 4799999999987654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=143.94 Aligned_cols=168 Identities=20% Similarity=0.143 Sum_probs=119.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+|+||||+|.||++++++|+++|++|++++|......... .++.. ..++.++.+|+.+++++.+++++ .+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~l~~-~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL---KELKE-YGEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH---HHHHh-cCCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999987543222222 22211 24678899999999998887754 47
Q ss_pred CcEEEEcccccCcc---C---CccChHHHHHHHHHHHHHH----HHHHH-hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVG---E---STLEPLRYYHNITSNTLVI----LEAMA-AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~---~---~~~~~~~~~~~n~~~~~~l----l~~~~-~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
+|+|||+||..... . ...+....+.+|+.++..+ +..+. +.+..++|++||...+.. .
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~-----------~ 145 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEP-----------M 145 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCC-----------C
Confidence 99999999974311 1 1112233456676664443 33333 234468999999765421 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+...|+.+|...+.+.+.++.+ .|+++..+.||.+-.+
T Consensus 146 ~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~ 187 (259)
T PRK08340 146 PPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTP 187 (259)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCc
Confidence 23568999999999999998886 4799999999988655
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-16 Score=141.88 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=124.7
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..++++||||+ +.||.+++++|+++|++|++++|..+......+...++. ..++.++.+|+.|++++.+++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHHH
Confidence 445899999997 899999999999999999998875433322222222221 24678899999999998877654
Q ss_pred ---CCCcEEEEcccccCc----c----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV----G----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||.... . .........+++|+.+...+++.+... ...++|++||....-
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 153 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER--------- 153 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc---------
Confidence 469999999996531 1 111223446778888887777666532 225899999954421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+......|+.+|...+.+.+.++.+ .|+++..|.||.+-.+
T Consensus 154 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~ 197 (257)
T PRK08594 154 --VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTL 197 (257)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCH
Confidence 1122568999999999999988775 5899999999988654
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=144.61 Aligned_cols=223 Identities=18% Similarity=0.182 Sum_probs=143.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHH----HHHhh--
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVN----KIFAE-- 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~----~~~~~-- 122 (393)
..++||||+|+||.+++++|+++|++|+++.|.... .......++.. ....+.++.+|+.|.+++. ++++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~ 79 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAA--AASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACF 79 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHH--HHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHH
Confidence 479999999999999999999999999987653321 11122222211 1235667899999987553 33321
Q ss_pred ---CCCcEEEEcccccCccCCc----c-----------ChHHHHHHHHHHHHHHHHHHHhcC----------CcEEEEee
Q 016208 123 ---NAFDAVMHFAAVAYVGEST----L-----------EPLRYYHNITSNTLVILEAMAAHK----------VKTLIYSS 174 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~~~----~-----------~~~~~~~~n~~~~~~ll~~~~~~~----------~~~~V~~S 174 (393)
.++|+||||||........ . +....+++|+.++..+++++.... ..++|++|
T Consensus 80 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 80 RAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred HccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 3699999999975332111 1 134678899999988887754321 13577777
Q ss_pred cceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCccccccc
Q 016208 175 TCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGR 251 (393)
Q Consensus 175 S~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 251 (393)
|.... .+..+..+|+.+|...+.+++.++.+ .|++++.|+||.+..+..
T Consensus 160 s~~~~-----------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~----------------- 211 (267)
T TIGR02685 160 DAMTD-----------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDA----------------- 211 (267)
T ss_pred hhhcc-----------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccc-----------------
Confidence 74332 12334678999999999999998777 689999999999875531
Q ss_pred chHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCc
Q 016208 252 ISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKG 317 (393)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~ 317 (393)
+............+ + + ..+...+|+++++++++..... ..+..+.+.++..
T Consensus 212 ~~~~~~~~~~~~~~---~---------~---~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 212 MPFEVQEDYRRKVP---L---------G---QREASAEQIADVVIFLVSPKAKYITGTCIKVDGGLS 263 (267)
T ss_pred cchhHHHHHHHhCC---C---------C---cCCCCHHHHHHHHHHHhCcccCCcccceEEECCcee
Confidence 11111111111111 0 0 1245789999999998875322 2346676755543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=158.48 Aligned_cols=224 Identities=22% Similarity=0.197 Sum_probs=155.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|.||.+++++|+++|++|++++|...... +...++ ...+..+.+|+.|++++.++++.
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 340 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAK---KLAEAL---GDEHLSVQADITDEAAVESAFAQIQAR 340 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999987532221 111111 24567789999999998887754
Q ss_pred -CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
..+|+||||||.... . .........+++|+.++.++++.+... +..++|++||...+... .
T Consensus 341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~ 409 (520)
T PRK06484 341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLAL-----------P 409 (520)
T ss_pred cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCC-----------C
Confidence 369999999997532 1 122345667889999999998887653 33589999997665322 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|+..+.+.+.++.+ .|+++..+.||.|..+...... ...........+..+
T Consensus 410 ~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~~------ 471 (520)
T PRK06484 410 PRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALK------------ASGRADFDSIRRRIP------ 471 (520)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhc------------cccHHHHHHHHhcCC------
Confidence 3578999999999999988776 4799999999999776321000 000011122222222
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+..++|+|+++++++.... ...++.+.+.++
T Consensus 472 ----------~~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 472 ----------LGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred ----------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 1124678999999999887432 234567777554
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-16 Score=142.06 Aligned_cols=225 Identities=16% Similarity=0.082 Sum_probs=148.2
Q ss_pred CCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..++++||||++ .||.+++++|+++|++|++++|...... ..+.+... .+...++.+|++|.+++.+++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~-~~~~~~~~---~g~~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGK-RVKPLAES---LGSDFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHH-HHHHHHHh---cCCceEEeCCCCCHHHHHHHHHHHH
Confidence 4558999999997 9999999999999999999877432111 11222111 12235788999999998877655
Q ss_pred ---CCCcEEEEcccccCcc--------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG--------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
..+|++|||||..... ....+....+++|+.++..+++++... .-.++|++||......
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~-------- 152 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRV-------- 152 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcccc--------
Confidence 4799999999975321 122334557789999988877766432 1258999998654311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
......|+.+|...+.+.+.++.+ .|+++..|.||.+-.+.... + .-.........+..|
T Consensus 153 ---~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~-~------------~~~~~~~~~~~~~~p- 215 (271)
T PRK06505 153 ---MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAG-I------------GDARAIFSYQQRNSP- 215 (271)
T ss_pred ---CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccc-C------------cchHHHHHHHhhcCC-
Confidence 122568999999999999988876 58999999999986642110 0 000011112222212
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
+ ..+...+|+++++++++.... .-.++.+.+.++
T Consensus 216 --~-------------~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 216 --L-------------RRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred --c-------------cccCCHHHHHHHHHHHhCccccccCceEEeecCC
Confidence 1 124578999999999887432 223467767555
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=144.00 Aligned_cols=171 Identities=19% Similarity=0.145 Sum_probs=123.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+++||||+|+||.++++.|+++|++|++++|.........+.+... ....+.++.+|+.+++++.+++++ .+
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARAL--GGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999887543222222222221 112345678999999988876654 35
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----c-CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----H-KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+||...... ...+....+++|+.++..+++++.. . ...++|++||...+... ..
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~-----------~~ 147 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL-----------PW 147 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC-----------CC
Confidence 899999999753322 2233466788999999999988642 2 23589999996543221 12
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
...|+.+|...+.+.+.++.+ .++++++++||.+.++.
T Consensus 148 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~ 188 (272)
T PRK07832 148 HAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL 188 (272)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 567999999888877766543 68999999999998774
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-16 Score=144.07 Aligned_cols=225 Identities=18% Similarity=0.129 Sum_probs=149.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC------CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR------GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
+..++++||||++.||.+++++|++.|++|++++|..+ ......+...++......+.++.+|+++.+++.+++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 34589999999999999999999999999999876531 112222223333222346788999999999888776
Q ss_pred hh-----CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cC------CcEEEEeecceeecC
Q 016208 121 AE-----NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HK------VKTLIYSSTCATYGE 181 (393)
Q Consensus 121 ~~-----~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~------~~~~V~~SS~~vyg~ 181 (393)
+. .++|++|||||..... ....+....+++|+.++..+++++.. .+ ..++|++||...+..
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 163 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG 163 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence 54 4789999999975422 12234566788999998888776642 11 148999999655422
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
.. ....|+.+|...+.+.+.++.+ .|+++..|.|+ +.-+ +......
T Consensus 164 ~~-----------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~-------------------~~~~~~~ 212 (286)
T PRK07791 164 SV-----------GQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTR-------------------MTETVFA 212 (286)
T ss_pred CC-----------CchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCC-------------------cchhhHH
Confidence 11 2568999999999999888776 68999999997 4211 1111111
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
......+ .+ ...+...+|+++++++++... ....++.+.+.++.
T Consensus 213 ~~~~~~~------------~~--~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~ 257 (286)
T PRK07791 213 EMMAKPE------------EG--EFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGK 257 (286)
T ss_pred HHHhcCc------------cc--ccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCc
Confidence 1111111 01 112567999999999988643 22244677675543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=137.76 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=137.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-CCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-AFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~V 128 (393)
|+++||||+|.||.+++++|.++ ++|++++|... .+.+|+.+.+++.++++.. ++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 58999999999999999999999 99999877421 3568999999999888653 79999
Q ss_pred EEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHH
Q 016208 129 MHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA 202 (393)
Q Consensus 129 i~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~s 202 (393)
||+||...... ...+....+++|+.++.++++++... +..++|++||..... +......|+.+
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~-----------~~~~~~~Y~~s 128 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE-----------PIPGGASAATV 128 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC-----------CCCCchHHHHH
Confidence 99999754322 12334556789999999999887643 235799998854321 12235689999
Q ss_pred HHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 203 KKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 203 K~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
|...+.+.+.++.+ .|+++..++||.+-.+. . . .....+ +
T Consensus 129 K~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~-------------------~-~----~~~~~~-------------~- 170 (199)
T PRK07578 129 NGALEGFVKAAALELPRGIRINVVSPTVLTESL-------------------E-K----YGPFFP-------------G- 170 (199)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEEcCCcccCch-------------------h-h----hhhcCC-------------C-
Confidence 99999999988775 58999999998874321 0 0 000001 1
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEe
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNV 312 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni 312 (393)
..++..+|+|+++..+++... .+++|++
T Consensus 171 --~~~~~~~~~a~~~~~~~~~~~--~g~~~~~ 198 (199)
T PRK07578 171 --FEPVPAARVALAYVRSVEGAQ--TGEVYKV 198 (199)
T ss_pred --CCCCCHHHHHHHHHHHhccce--eeEEecc
Confidence 125789999999999988543 3367765
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-16 Score=138.46 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=124.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---CCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---NAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~ 125 (393)
|++++||||+|+||++++++|++.|++|++++|..... +.+.. .+++++.+|+.+.+++.+++.+ .++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~----~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL----AALQA-----LGAEALALDVADPASVAGLAWKLDGEAL 71 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH----HHHHh-----ccceEEEecCCCHHHHHHHHHHhcCCCC
Confidence 67999999999999999999999999999998753221 12221 2467899999999998886533 359
Q ss_pred cEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecce-eecCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCA-TYGEPDKMPITESTPQKP 195 (393)
Q Consensus 126 d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~p 195 (393)
|+|||+++..... ....+....++.|+.++.++++++... ...++|++||.. .++... ..+
T Consensus 72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------~~~ 142 (222)
T PRK06953 72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT---------GTT 142 (222)
T ss_pred CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc---------CCC
Confidence 9999999976321 123445778999999999999888642 234789988854 343211 122
Q ss_pred CChHHHHHHHHHHHHHHHHhh-CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+++.++.+ .+++++.++|+.+.-+
T Consensus 143 ~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~ 180 (222)
T PRK06953 143 GWLYRASKAALNDALRAASLQARHATCIALHPGWVRTD 180 (222)
T ss_pred ccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecC
Confidence 347999999999999988766 4789999999988654
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=146.50 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=126.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
+++++||||++.||.++++.|+++| ++|++++|....... ...++......+.++.+|+++.+++.+++++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~---~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQ---AAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHH---HHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999999999 999999875432222 2222222234678889999999998877654
Q ss_pred CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHH----HhcC--CcEEEEeecceeecCCCC----CC-
Q 016208 123 NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAM----AAHK--VKTLIYSSTCATYGEPDK----MP- 186 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~--~~~~V~~SS~~vyg~~~~----~~- 186 (393)
.++|++||+||+.... .........+++|+.+...+++.+ ++.+ ..++|++||...+..... .+
T Consensus 80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~ 159 (314)
T TIGR01289 80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKA 159 (314)
T ss_pred CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcc
Confidence 3699999999975321 112334557889998877775554 3332 359999999877532100 00
Q ss_pred -----------------CCCCCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccC
Q 016208 187 -----------------ITESTPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIG 231 (393)
Q Consensus 187 -----------------~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G 231 (393)
..+..+..+...|+.||++...+.+.++++ .|+.++.++||.|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 160 NLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred cccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 111223345678999999988888877664 479999999999854
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=163.56 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=131.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++++||||+|+||.+++++|+++|++|++++|.........+.+. ....++.++.+|+.|.+++.+++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR---AKGGTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885432222222222 2235688899999999999888754
Q ss_pred --CCCcEEEEcccccCccC---C---ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE---S---TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~---~---~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||...... . ..+....+++|+.++.++++++ ++.+.+++|++||.+.+....
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------- 517 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAP------- 517 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC-------
Confidence 26999999999753211 1 1245667889999988776654 445667999999988775432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...+.+.+.++.+ .|+++++++||.|..+
T Consensus 518 ----~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~ 558 (657)
T PRK07201 518 ----RFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTP 558 (657)
T ss_pred ----CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCccc
Confidence 2568999999999999887765 5899999999999765
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=139.21 Aligned_cols=225 Identities=15% Similarity=0.081 Sum_probs=148.5
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..++++||||+ +.||.+++++|+++|++|++++|..+......+...++ ..+.++.+|+++.+++.++++.
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHHHHHH
Confidence 445899999998 49999999999999999999887543211111111121 2356789999999998877654
Q ss_pred ---CCCcEEEEcccccCcc--------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG--------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||..... ....+....+++|+.+...+++.+... .-.++|++||.....
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~--------- 154 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK--------- 154 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence 3689999999975321 122345668889999988888776532 124799999854321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+-.+-.... . .+ ........+..|
T Consensus 155 --~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-----~-------~~-~~~~~~~~~~~p- 218 (258)
T PRK07533 155 --VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-----D-------DF-DALLEDAAERAP- 218 (258)
T ss_pred --CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-----C-------Cc-HHHHHHHHhcCC-
Confidence 1123568999999999999888766 589999999998865421100 0 01 111122222222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++++++++... ..-.++.+.+.++
T Consensus 219 ---------------~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vdgg 253 (258)
T PRK07533 219 ---------------LRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGG 253 (258)
T ss_pred ---------------cCCCCCHHHHHHHHHHHhChhhccccCcEEeeCCc
Confidence 112567899999999988743 2223456666443
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-16 Score=139.98 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=126.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
+.+++|+||||+|.||.++++.|+++|++|++++|.........+.+... ...++.++.+|+++++++.++++. .++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA--HGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 34589999999999999999999999999999988543222222222211 124678899999999999888765 469
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
|++||+||...... ...+....+++|+.+...+++.+ .+.+..++|++||.... .+..+..
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~-----------~~~~~~~ 151 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE-----------NPDADYI 151 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc-----------CCCCCch
Confidence 99999999753222 12234557789999888777765 34444589999885332 1223456
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.|+.+|...+.+.+.++.+ .|++++.+.||.+..+
T Consensus 152 ~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 152 CGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred HhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 7999999999999887654 5899999999988765
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=138.94 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=145.5
Q ss_pred CCCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..++++|||| ++.||.+++++|+++|++|++..|..+.. +.++++.........+.+|+.|++++.++++.
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLE----ERVRKMAAELDSELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHH----HHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH
Confidence 34479999997 67999999999999999999877643221 22222221113456789999999998877754
Q ss_pred ---CCCcEEEEcccccCcc----C-----CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG----E-----STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPI 187 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~----~-----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~ 187 (393)
.++|++|||||+.... . ........+++|+.+...+.+.+... +..++|++||...+..
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~------ 153 (261)
T PRK08690 80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRA------ 153 (261)
T ss_pred HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccC------
Confidence 4799999999976421 0 11123345678888877766654321 2257999998654421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC
Q 016208 188 TESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII 264 (393)
Q Consensus 188 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
......|+.+|...+.+.+.++.+ .|+++..+.||.+--+..... . . .........+..
T Consensus 154 -----~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~-----~-------~-~~~~~~~~~~~~ 215 (261)
T PRK08690 154 -----IPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGI-----A-------D-FGKLLGHVAAHN 215 (261)
T ss_pred -----CCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcC-----C-------c-hHHHHHHHhhcC
Confidence 123568999999999998887654 689999999999865421100 0 0 011112222211
Q ss_pred CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 265 PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 265 ~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
| ...+...+|+|+++.+++... ....++++-+.++
T Consensus 216 p----------------~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG 251 (261)
T PRK08690 216 P----------------LRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGG 251 (261)
T ss_pred C----------------CCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCC
Confidence 2 123667899999999998853 2234466766544
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=140.18 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=148.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~ 125 (393)
+.++|||| |+||.+++++|. +|++|++++|...... +...++......+.++.+|+.|.+++.++++. .++
T Consensus 3 k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLE---AAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHH---HHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 57889997 799999999996 8999999988543222 22222222234678899999999999888764 469
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCC-----CCC---CCCCC----
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPD-----KMP---ITEST---- 191 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~-----~~~---~~E~~---- 191 (393)
|+|||+||+.. ...+....+++|+.++.++++.+... .-.++|++||........ ... .+..+
T Consensus 78 d~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (275)
T PRK06940 78 TGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSL 154 (275)
T ss_pred CEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccc
Confidence 99999999753 23467789999999999998887643 113567777755432210 000 00000
Q ss_pred ----C---CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 192 ----P---QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 192 ----~---~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
+ ..+...|+.||+..+.+.+.++.+ .|+++..+.||.+..+.....+. ...........
T Consensus 155 ~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~-----------~~~~~~~~~~~ 223 (275)
T PRK06940 155 PFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELN-----------GPRGDGYRNMF 223 (275)
T ss_pred ccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhc-----------CCchHHHHHHh
Confidence 0 023568999999999998887665 58999999999987653110000 00001111111
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...| ...+...+|+|+++++++... ....++.+.+.++
T Consensus 224 ~~~p----------------~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg 262 (275)
T PRK06940 224 AKSP----------------AGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGG 262 (275)
T ss_pred hhCC----------------cccCCCHHHHHHHHHHHcCcccCcccCceEEEcCC
Confidence 1111 112568899999999988643 2223467766544
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=138.40 Aligned_cols=228 Identities=17% Similarity=0.098 Sum_probs=148.9
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++++||||+ +.||.+++++|.++|++|+++.|.... ....+.+.++......+.++.+|++|++++.+++++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEK-GRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCccc-chHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 345899999986 799999999999999999887664321 111222222221123467889999999999877755
Q ss_pred ---CCCcEEEEcccccCc----cC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV----GE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||.... .. ...+....+++|+.++..+.+++... .-.++|++||.....
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~--------- 153 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR--------- 153 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc---------
Confidence 369999999997531 11 12234567789999988877776532 125899999954321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+-.+-... +. .. +..........|
T Consensus 154 --~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~-~~-----------~~-~~~~~~~~~~~p- 217 (258)
T PRK07370 154 --AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSA-VG-----------GI-LDMIHHVEEKAP- 217 (258)
T ss_pred --CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhc-cc-----------cc-hhhhhhhhhcCC-
Confidence 1123568999999999999998876 57999999999986542110 00 00 011111111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|++.++.+++.... .-.++++.+.++
T Consensus 218 ---------------~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 218 ---------------LRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred ---------------cCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 1235678999999999887432 223456666444
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=140.04 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=146.8
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhh-hhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 48 GVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVL-QELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 48 ~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
..++++||||+ +.||+++++.|++.|++|++++|..+.. ...+.+ .++ ... .++.+|++|.+++.++++.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~-~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALK-KRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHH-HHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHHHHH
Confidence 45899999997 7999999999999999999988753211 122222 222 123 5789999999998877654
Q ss_pred ---CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||.... ..........+++|+.++..+.+.+... .-.++|++||.+...
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--------- 149 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--------- 149 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---------
Confidence 468999999997531 1122334567889999988887766532 125899999854321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+......|+.+|...+.+.+.++.+ .|+++..+.||.|-.+.... .. .+ ...........|
T Consensus 150 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~-----------~~-~~~~~~~~~~~p- 213 (274)
T PRK08415 150 --YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASG-IG-----------DF-RMILKWNEINAP- 213 (274)
T ss_pred --CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhc-cc-----------hh-hHHhhhhhhhCc-
Confidence 1112467999999999999998876 58999999999886542110 00 00 000011111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+++++++++... ....++.+.+.++
T Consensus 214 ---------------l~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG 248 (274)
T PRK08415 214 ---------------LKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAG 248 (274)
T ss_pred ---------------hhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCc
Confidence 112567899999999998743 2223467766555
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=137.59 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=147.5
Q ss_pred CCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 48 GVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 48 ~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..++++|||| ++.||.+++++|++.|++|++++|..+..+...+...++ +...++.+|++|++++.++++.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF----GSDLVFPCDVASDEQIDALFASLGQ 80 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc----CCcceeeccCCCHHHHHHHHHHHHH
Confidence 3479999996 679999999999999999998866433222222211221 2234688999999999877754
Q ss_pred --CCCcEEEEcccccCcc---------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG---------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~---------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||..... ....+....+++|+.+...+.+++... +-.++|++||....-
T Consensus 81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~--------- 151 (260)
T PRK06997 81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--------- 151 (260)
T ss_pred HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc---------
Confidence 4699999999975321 112234457889999988887776543 235899999865421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+-.+-... +. . .....+...+..|
T Consensus 152 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~-----------~-~~~~~~~~~~~~p- 215 (260)
T PRK06997 152 --VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IK-----------D-FGKILDFVESNAP- 215 (260)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-cc-----------c-hhhHHHHHHhcCc-
Confidence 1122567999999999999988776 58999999999885532110 00 0 0111111111112
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+..++|+++++.+++.... ...++++.+.++
T Consensus 216 ---------------~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 216 ---------------LRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred ---------------ccccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 1125678999999999987532 234467766544
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=138.71 Aligned_cols=225 Identities=13% Similarity=0.040 Sum_probs=148.8
Q ss_pred CCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 48 GVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 48 ~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..++++||||+ +.||.++++.|+++|++|+++.|.... ....+.+.+. -.....+.+|+.+++++.++++.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~-~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDAL-KKRVEPLAAE---LGAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHH-HHHHHHHHHh---cCCceEEecCCCCHHHHHHHHHHHHH
Confidence 34799999997 899999999999999999987663211 1122222111 12356789999999998887654
Q ss_pred --CCCcEEEEcccccCcc--------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG--------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|++||+||+.... ....+....+++|+.++..+++.+... +-.++|++||.+...
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~---------- 154 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK---------- 154 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc----------
Confidence 3689999999975321 122345668889999999998877643 235899999854321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+-.+..... + .+ ...........|
T Consensus 155 -~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~----~--------~~-~~~~~~~~~~~p-- 218 (272)
T PRK08159 155 -VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI----G--------DF-RYILKWNEYNAP-- 218 (272)
T ss_pred -CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC----C--------cc-hHHHHHHHhCCc--
Confidence 1123568999999999999988776 579999999998865321100 0 00 001111111111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+...+|+|+++++++.... ...+..+.+.++.
T Consensus 219 --------------~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 219 --------------LRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred --------------ccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 1125678999999999987432 2344677776553
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=144.35 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=122.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC--HHHHH---HHHhhC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD--AKAVN---KIFAEN 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~---~~~~~~ 123 (393)
++.++||||||.||.+++++|+++|++|++++|+........+.++.... ...+..+.+|+.+ .+.+. +.+...
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYS-KTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC-CcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 57999999999999999999999999999998864433333333322111 1356778899985 33333 333223
Q ss_pred CCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
++|++|||||..... ....+....+++|+.++..+.+.+. +.+..++|++||...+.... .
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~---------~ 202 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPS---------D 202 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC---------C
Confidence 567999999975321 1122344578899999888777754 44567899999976642110 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.....|+.||...+.+.+.++.+ .|+++.++.||.+-.+
T Consensus 203 p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~ 244 (320)
T PLN02780 203 PLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATK 244 (320)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecC
Confidence 12578999999999999988776 5899999999998654
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=136.85 Aligned_cols=225 Identities=17% Similarity=0.095 Sum_probs=147.2
Q ss_pred CCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.++.++||||++ .||.++++.|.++|++|++.+|.. ......+.+.. ..+...++.+|++|++++.++++.
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~---~~g~~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAE---EIGCNFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHH---hcCCceEEEccCCCHHHHHHHHHHHH
Confidence 4458999999997 899999999999999999887642 11112222221 112234678999999998877754
Q ss_pred ---CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++||+|+.... +....+....+++|+.+...+++.+... .-.++|++||......
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~-------- 153 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKV-------- 153 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccC--------
Confidence 469999999986431 1122345567889999988887765432 1258999998554311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
......|+.+|+..+.+.+.++.+ .|+++..+.||.+-.+.... .. .. ...........|
T Consensus 154 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~-----------~~-~~~~~~~~~~~p- 216 (260)
T PRK06603 154 ---IPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA-IG-----------DF-STMLKSHAATAP- 216 (260)
T ss_pred ---CCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc-CC-----------Cc-HHHHHHHHhcCC-
Confidence 112468999999999999988776 67999999999986542100 00 00 111112222222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+|+++++++++.... ...++.+.+.++
T Consensus 217 ---------------~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 217 ---------------LKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred ---------------cCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 1125678999999999987532 223466766544
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=142.36 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=124.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++++||||+|+||.+++++|+++|++|++++|..... +.+... ....+.++.+|+.+.+++.+++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGL----QELEAA--HGDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHhh--cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999998743221 112111 124578899999999888877654
Q ss_pred CCCcEEEEcccccCcc-C---Cc-----cChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVG-E---ST-----LEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~-~---~~-----~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|++||+||..... . .. ......+++|+.++..+++++... ...++|++||...+..
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~--------- 148 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYP--------- 148 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecC---------
Confidence 4789999999964211 1 11 124567889999999998888643 1247888888654421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGS 232 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~ 232 (393)
......|+.+|...+.+.+.++.+. .+++..+.||.+..+
T Consensus 149 --~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~ 190 (262)
T TIGR03325 149 --NGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSD 190 (262)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCC
Confidence 1124579999999999999998873 389999999998765
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-16 Score=136.86 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=120.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--CCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--NAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~ 127 (393)
|+++||||+|.||+++++.|.++|++|++++|.... ..+...+ .++.++.+|+.+.+++.+++++ ..+|+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~---~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~id~ 72 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDD---LEVAAKE-----LDVDAIVCDNTDPASLEEARGLFPHHLDT 72 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHh-----ccCcEEecCCCCHHHHHHHHHHHhhcCcE
Confidence 479999999999999999999999999998874321 1111111 2467889999999999888754 26899
Q ss_pred EEEcccccCc--c-------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 128 VMHFAAVAYV--G-------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 128 Vi~~A~~~~~--~-------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+||+|+.... . ....+....+++|+.++..+++++... ...++|++||.. ..+.
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~---------------~~~~ 137 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN---------------PPAG 137 (223)
T ss_pred EEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC---------------CCCc
Confidence 9999984211 0 012345667889999999988887642 225899999853 0124
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
..|+.+|+..+.+.+.++.+ .|+++..+.||.+..+
T Consensus 138 ~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~ 176 (223)
T PRK05884 138 SAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP 176 (223)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence 68999999999999988776 6799999999987543
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-15 Score=135.35 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=146.4
Q ss_pred CCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++++||||++ .||.++++.|+++|++|++++|.. ... +.+.++....+.+.++.+|++|++++.++++.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLK---GRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHH---HHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH
Confidence 3457999999986 899999999999999999887742 111 22222222223567889999999999887754
Q ss_pred ---CCCcEEEEcccccCccC---------CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE---------STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|++|||||+..... ........+++|+.+...+.+++... .-.++|++||.+...
T Consensus 80 ~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~-------- 151 (262)
T PRK07984 80 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-------- 151 (262)
T ss_pred hhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC--------
Confidence 35899999999753211 11223456778988877777765432 124799999864321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+--+..... . . ............|
T Consensus 152 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-----~-------~-~~~~~~~~~~~~p 215 (262)
T PRK07984 152 ---AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-----K-------D-FRKMLAHCEAVTP 215 (262)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcC-----C-------c-hHHHHHHHHHcCC
Confidence 1122568999999999999998876 589999999998854311000 0 0 0111111111112
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|++.++++++... ....+..+.+.++
T Consensus 216 ----------------~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg 250 (262)
T PRK07984 216 ----------------IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 250 (262)
T ss_pred ----------------CcCCCCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 122568899999999988743 2223456666544
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=137.15 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=129.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..+.|.|+|||||+.||.+++.+|.++|..++.+.|..+..+...+.+++..... ++.++++|++|.+++.++++.
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999999998888887777776667777766654 799999999999999977633
Q ss_pred --CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++|||||+....... .+....+++|+.|+..+..++ ++.+-.++|.+||..-+-.-
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~---------- 157 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPL---------- 157 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCC----------
Confidence 6899999999987633222 223447889988876665554 55555699999996654221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCcEE----EEeeccc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKTTNMAVM----ILRYFNV 229 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~----ilRp~~v 229 (393)
.....|..||.+.+.+...+..+..-..+ ++-||.|
T Consensus 158 -P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V 197 (282)
T KOG1205|consen 158 -PFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPI 197 (282)
T ss_pred -CcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCce
Confidence 11348999999999999998888443332 3555554
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=139.19 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=123.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---CCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---NAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~ 125 (393)
|++|+||||+|++|++++++|+++|++|++++|...... .+... .++.++.+|+.|.+++.++++. .++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT----ALQAL----PGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH----HHHhc----cccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 578999999999999999999999999999998654322 12221 4678889999999988877754 369
Q ss_pred cEEEEcccccCccC------CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE------STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 126 d~Vi~~A~~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
|+|||+||...... ...+....+.+|+.++..+++.+... +..++|++||. +|.... .+..+.
T Consensus 73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~--~g~~~~------~~~~~~ 144 (225)
T PRK08177 73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ--LGSVEL------PDGGEM 144 (225)
T ss_pred CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC--cccccc------CCCCCc
Confidence 99999999753211 12234456678888888888877533 23478888874 322111 112235
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
..|+.+|...+.+++.++.+ .++++..++||.+-.+
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 57999999999999988766 5789999999988654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=123.27 Aligned_cols=209 Identities=14% Similarity=0.099 Sum_probs=149.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||.|+||||.+|++|+++++++||+|+++.|+..+... .+++..++.|+.|++++.+.+ .+.|+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~-----------~~~~~i~q~Difd~~~~a~~l--~g~DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA-----------RQGVTILQKDIFDLTSLASDL--AGHDAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc-----------cccceeecccccChhhhHhhh--cCCceEE
Confidence 689999999999999999999999999999996544321 157889999999999999999 8999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
..-+....+ .. .........+++..+.++++|++.++..+-.--.++ ..-.+.|.-|...|...+..+|.
T Consensus 68 sA~~~~~~~-----~~---~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~rLvD~p~fP~ey~~~A~~~ae~- 137 (211)
T COG2910 68 SAFGAGASD-----ND---ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-TRLVDTPDFPAEYKPEALAQAEF- 137 (211)
T ss_pred EeccCCCCC-----hh---HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-ceeecCCCCchhHHHHHHHHHHH-
Confidence 877654211 11 122344777888898889999999887554432222 33345677788889999999884
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+..+..+..++|+.|-|+..|-|+++.. . .+-+...+.... .| -++|...
T Consensus 138 L~~Lr~~~~l~WTfvSPaa~f~PGerTg-------------~--------yrlggD~ll~n~------~G---~SrIS~a 187 (211)
T COG2910 138 LDSLRAEKSLDWTFVSPAAFFEPGERTG-------------N--------YRLGGDQLLVNA------KG---ESRISYA 187 (211)
T ss_pred HHHHhhccCcceEEeCcHHhcCCccccC-------------c--------eEeccceEEEcC------CC---ceeeeHH
Confidence 3344445679999999999999974421 0 001111122211 22 2589999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEe
Q 016208 290 DLVDAHVLALANAKPGKVGIYNV 312 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni 312 (393)
|.|-|++.-++++...+ +.|-+
T Consensus 188 DYAiA~lDe~E~~~h~r-qRftv 209 (211)
T COG2910 188 DYAIAVLDELEKPQHIR-QRFTV 209 (211)
T ss_pred HHHHHHHHHHhcccccc-eeeee
Confidence 99999999999876543 55544
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-16 Score=157.08 Aligned_cols=173 Identities=15% Similarity=0.098 Sum_probs=131.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+..++++||||+|+||++++++|.++|++|++++|+........+.++. ...++.++.+|+++++++.+++++
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRA---AGAVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999998854332222222222 134688999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
..+|+||||||+..... ...+....+++|+.++.++++++. +.+ ..++|++||.+.|....
T Consensus 389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------- 460 (582)
T PRK05855 389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR-------- 460 (582)
T ss_pred hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC--------
Confidence 25899999999864322 223445577899999888877653 333 25899999988875432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+...|+.+|+..+.+.+.++.+ .|+++++++||.|-.+
T Consensus 461 ---~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 461 ---SLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 3678999999999988887665 5899999999998654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-15 Score=132.86 Aligned_cols=225 Identities=15% Similarity=0.054 Sum_probs=146.4
Q ss_pred CCCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..++++|||| ++.||.++++.|+++|++|++++|... ....+.+.+.. ...+.++.+|+.+++++.++++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~--~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA--LRLTERIAKRL--PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc--hhHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45589999999 899999999999999999999877421 11112222111 13577899999999998877654
Q ss_pred ---CCCcEEEEcccccCcc-----C---CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG-----E---STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~-----~---~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++||+||+.... . ...+....+++|+.++..+.+.+... .-.++|++|+....
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~---------- 150 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV---------- 150 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc----------
Confidence 4699999999975321 1 11233446889999988877776532 22478888753211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+...+..|+.+|...+.+.+.++.+ .|+++..+.||.+-.+-..... . .....+...+..|
T Consensus 151 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~------------~-~~~~~~~~~~~~p- 214 (256)
T PRK07889 151 --AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIP------------G-FELLEEGWDERAP- 214 (256)
T ss_pred --cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhccc------------C-cHHHHHHHHhcCc-
Confidence 1123567999999999999888776 6899999999998654211000 0 0111111111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
+ .+.+...+|+|+++++++.... ...+.++.+.++
T Consensus 215 --~------------~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 215 --L------------GWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred --c------------ccccCCHHHHHHHHHHHhCcccccccceEEEEcCc
Confidence 0 0135678999999999887532 223456666443
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=129.04 Aligned_cols=169 Identities=16% Similarity=0.158 Sum_probs=124.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
++++||||+|+||.+++++|.++|. .|+++.|...........+.++.....++.++.+|+.+.+++.+++.+ .
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 677777754433222111222222235677899999999888877644 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
.+|+|||+|+...... ...+....++.|+.++.++++++++.+.+++|++||....-.. .....|
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~-----------~~~~~y 149 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGN-----------PGQANY 149 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCC-----------CCchhh
Confidence 4799999999654321 1234456788999999999999988777899999886443221 125689
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeecccc
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~ 230 (393)
+.+|...+.+++... ..+++++.+.|+.+-
T Consensus 150 ~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 150 AAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred HHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 999999999996654 478999999988754
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=133.99 Aligned_cols=161 Identities=12% Similarity=0.126 Sum_probs=110.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+.+++++||||+|+||.+++++|+++|++|++++|...... +. .. ......+.+|+++.+++.+.+ .++
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~---~~--~~---~~~~~~~~~D~~~~~~~~~~~--~~i 80 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS---ES--ND---ESPNEWIKWECGKEESLDKQL--ASL 80 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh---hh--hc---cCCCeEEEeeCCCHHHHHHhc--CCC
Confidence 345589999999999999999999999999999987542111 10 00 112357889999999999888 689
Q ss_pred cEEEEcccccCccC-CccChHHHHHHHHHHHHHHHHHHHhc-------CCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE-STLEPLRYYHNITSNTLVILEAMAAH-------KVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 126 d~Vi~~A~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
|++|||||...... ...+....+++|+.++.++++.+... +...++..||.+... +. ...
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-----------~~-~~~ 148 (245)
T PRK12367 81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-----------PA-LSP 148 (245)
T ss_pred CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC-----------CC-CCc
Confidence 99999999753322 23456778899999999998876542 112344444432221 11 245
Q ss_pred hHHHHHHHHHHHHHHHHh-------hCCCcEEEEeeccc
Q 016208 198 PYGKAKKMSEDIIIDFSK-------TTNMAVMILRYFNV 229 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~-------~~g~~~~ilRp~~v 229 (393)
.|+.||...+.+. .+++ ..++.+..+.|+.+
T Consensus 149 ~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~ 186 (245)
T PRK12367 149 SYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPF 186 (245)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCc
Confidence 7999999976433 2222 25777777777654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.7e-15 Score=144.47 Aligned_cols=167 Identities=17% Similarity=0.071 Sum_probs=124.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...++++||||+|.||.++++.|.++|++|+++++... .....+...+ -+..++.+|+++.+++.++++.
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~-~~~l~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA-GEALAAVANR-----VGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc-HHHHHHHHHH-----cCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999887322 1112221112 2346788999999988877653
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcC----CcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHK----VKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~----~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||+..... ........+++|+.++.++.+++.... ..++|++||...+....
T Consensus 282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~---------- 351 (450)
T PRK08261 282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR---------- 351 (450)
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC----------
Confidence 26899999999764321 223455678899999999999987642 26899999976543221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI 230 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~ 230 (393)
....|+.+|...+.+++.++.+ .|+++..+.||.+-
T Consensus 352 -~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~ 390 (450)
T PRK08261 352 -GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIE 390 (450)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCc
Confidence 2578999999888888877655 58999999999874
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=131.64 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=118.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+++||||++.||.+++++|. +|++|++++|.........+.+++. ....+.++.+|+.|++++.+++++ .+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR--GATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--cCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 679999999999999999998 5999999988543333333333221 112477899999999998877654 46
Q ss_pred CcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHH----HHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVIL----EAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll----~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|++||+||....... .......+++|+.+...++ ..+.+.+ -.++|++||...+-. ...
T Consensus 78 id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~-----------~~~ 146 (246)
T PRK05599 78 ISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA-----------RRA 146 (246)
T ss_pred CCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC-----------CcC
Confidence 9999999997533211 1112334566776665444 4444432 358999999654421 113
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+.+.++.+ .|+++..+.||.+..+
T Consensus 147 ~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 147 NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred CcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 568999999999999888776 5799999999988654
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=135.21 Aligned_cols=170 Identities=12% Similarity=0.040 Sum_probs=120.8
Q ss_pred EEEEEcCCChhHHHHHHHHHH----CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC---
Q 016208 51 HVLVTGGAGYIGSHAALRLLK----DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--- 123 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--- 123 (393)
.++||||+|.||.+++++|.+ .|+.|++++|.........+.+... .....+.++.+|+.+.+++.++++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAE-RSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhc-CCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 7999999988543322222222211 11246788999999999888766431
Q ss_pred ------CCcEEEEcccccCcc-C-C-----ccChHHHHHHHHHHHHHHHHHHHh----c-C-CcEEEEeecceeecCCCC
Q 016208 124 ------AFDAVMHFAAVAYVG-E-S-----TLEPLRYYHNITSNTLVILEAMAA----H-K-VKTLIYSSTCATYGEPDK 184 (393)
Q Consensus 124 ------~~d~Vi~~A~~~~~~-~-~-----~~~~~~~~~~n~~~~~~ll~~~~~----~-~-~~~~V~~SS~~vyg~~~~ 184 (393)
+.|+|||+||..... . . .......+++|+.++..+.+.+.. . + ..++|++||...+..
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~--- 157 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP--- 157 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC---
Confidence 236999999964321 1 1 123456888999998777665543 2 2 248999999765422
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
......|+.+|...+.+.+.++.+ .|+++..+.||.+-.+
T Consensus 158 --------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 158 --------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence 123568999999999999988776 5799999999988554
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=128.64 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=137.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~d 126 (393)
|+|+||||+|+||++++++|+++| ..|....|..... . ...++.++.+|+++.+++.++.++ .++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~-----~~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F-----QHDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c-----ccCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 589999999999999999999985 5565555432211 0 125788899999999988776543 4799
Q ss_pred EEEEcccccCccC----------CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 127 AVMHFAAVAYVGE----------STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 127 ~Vi~~A~~~~~~~----------~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
+|||+||...... ........+.+|+.+...+++.+.. .+..+++++||.. +... + .+
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~-----~-~~ 141 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSIS-----D-NR 141 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--cccc-----c-CC
Confidence 9999999764210 0112345677888888777666643 3445899988732 1111 0 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|+..+.+.+.++.+ .++++..+.||.+..+... . .....+
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~---------------~--------~~~~~~-- 196 (235)
T PRK09009 142 LGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSK---------------P--------FQQNVP-- 196 (235)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCc---------------c--------hhhccc--
Confidence 234568999999999999988865 3789999999988665211 0 001111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCC-CcceEEe
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG-KVGIYNV 312 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~~yni 312 (393)
...++..+|+++++..++...... .+..+.+
T Consensus 197 --------------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~ 228 (235)
T PRK09009 197 --------------KGKLFTPEYVAQCLLGIIANATPAQSGSFLAY 228 (235)
T ss_pred --------------cCCCCCHHHHHHHHHHHHHcCChhhCCcEEee
Confidence 122578999999999999865322 3345544
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=144.51 Aligned_cols=168 Identities=16% Similarity=0.119 Sum_probs=127.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
..++++||||++.||.+++++|.++|++|++++|...... +...++ ...+.++.+|+.+++++.++++.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERAR---ERADSL---GPDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999999987533222 222222 24567899999999998887765
Q ss_pred CCCcEEEEcccccCc------cCCccChHHHHHHHHHHHHHHHHHHHhc----CCc-EEEEeecceeecCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYV------GESTLEPLRYYHNITSNTLVILEAMAAH----KVK-TLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~-~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||.... .....+....+++|+.++..+++++... +.. ++|++||........
T Consensus 78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~-------- 149 (520)
T PRK06484 78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALP-------- 149 (520)
T ss_pred CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCC--------
Confidence 469999999997321 1223345668889999998888777543 333 899999966543221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...+.+.+.++.+ .+++++.+.||.+-.+
T Consensus 150 ---~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~ 190 (520)
T PRK06484 150 ---KRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQ 190 (520)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCch
Confidence 2568999999999999888776 5799999999988654
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=135.88 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=120.7
Q ss_pred EEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CCCc
Q 016208 53 LVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NAFD 126 (393)
Q Consensus 53 lItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~d 126 (393)
+||||++.||.+++++|+++| ++|++++|...... +...++......+.++.+|+.+.+++.++++. ..+|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 77 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAE---RAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLD 77 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHH---HHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCC
Confidence 699999999999999999999 99999887432222 22222222234678889999999998877654 3689
Q ss_pred EEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHH----HhcC--CcEEEEeecceeecCCC-C--CC------
Q 016208 127 AVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAM----AAHK--VKTLIYSSTCATYGEPD-K--MP------ 186 (393)
Q Consensus 127 ~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~--~~~~V~~SS~~vyg~~~-~--~~------ 186 (393)
++|||||+.... .........+++|+.++..+++.+ .+.+ ..++|++||...+-... . .+
T Consensus 78 ~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~ 157 (308)
T PLN00015 78 VLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 157 (308)
T ss_pred EEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhh
Confidence 999999975321 122344568889999977765554 4443 46999999976541100 0 00
Q ss_pred ----------------CCCCCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccC
Q 016208 187 ----------------ITESTPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIG 231 (393)
Q Consensus 187 ----------------~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G 231 (393)
+++ .+..+...|+.||++.+.+.+.++.+ .|+.++.++||.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 158 LRGLAGGLNGLNSSAMIDG-GEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred hhhhhcccCCccchhhccc-cCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 011 12234567999999977777776664 479999999999964
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-14 Score=123.98 Aligned_cols=207 Identities=17% Similarity=0.204 Sum_probs=155.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
.+..+..||||||++.+|+.++.+|+++|..+.+.+.......+..+.++.. +.+..+.+|+++.+++.+..++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHH
Confidence 3456689999999999999999999999999999998888777777777654 4789999999999998876654
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
..+|++|||||+..... ....-...+++|+.+ +++++..+.+.+-.++|.++|.+-+-...+
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~g------- 182 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAG------- 182 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCcc-------
Confidence 57999999999875432 223345578888776 555677777777779999999665533322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh------CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT------TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~------~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
..+|+.||.++.-+.+.+..+ .|++++.+.|+.+=-.- +. ...+
T Consensus 183 ----l~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgm-------------------f~-------~~~~ 232 (300)
T KOG1201|consen 183 ----LADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGM-------------------FD-------GATP 232 (300)
T ss_pred ----chhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccc-------------------cC-------CCCC
Confidence 679999999998888776544 57899999988764210 00 0111
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG 305 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~ 305 (393)
-....+.+..+.+|+.++.++......
T Consensus 233 -------------~~~l~P~L~p~~va~~Iv~ai~~n~~~ 259 (300)
T KOG1201|consen 233 -------------FPTLAPLLEPEYVAKRIVEAILTNQAG 259 (300)
T ss_pred -------------CccccCCCCHHHHHHHHHHHHHcCCcc
Confidence 122445788999999999998866543
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=125.56 Aligned_cols=276 Identities=14% Similarity=0.078 Sum_probs=183.3
Q ss_pred cEEEEEcCCChhHHHHHH-----HHHHCC----CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 50 THVLVTGGAGYIGSHAAL-----RLLKDS----YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
++.++-+++|+|+..|.. ++-+.+ |+|++++|.+... ++.+-+.|..-..
T Consensus 13 r~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~---------------ritw~el~~~Gip------ 71 (315)
T KOG3019|consen 13 RDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA---------------RITWPELDFPGIP------ 71 (315)
T ss_pred ccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc---------------ccccchhcCCCCc------
Confidence 567788999999998887 443444 8999999865432 2333333322111
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHH-----HHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYH-----NITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~-----~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
..|+..+++++....++ -......++ .-+..+..|.++..++. .+-+|.+|..++|-......++|+++.
T Consensus 72 --~sc~a~vna~g~n~l~P-~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~ 148 (315)
T KOG3019|consen 72 --ISCVAGVNAVGNNALLP-IRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVH 148 (315)
T ss_pred --eehHHHHhhhhhhccCc-hhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccccc
Confidence 13444555554322211 112223333 44556778888887763 457999999999998888899999988
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
............-|..+.... ...+++++|.|.|.|.+- ..+..++-..+- |..
T Consensus 149 qgfd~~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~gG----------------Ga~~~M~lpF~~--------g~G 202 (315)
T KOG3019|consen 149 QGFDILSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKGG----------------GALAMMILPFQM--------GAG 202 (315)
T ss_pred CChHHHHHHHHHHHHHhhccC--cceeEEEEEEeEEEecCC----------------cchhhhhhhhhh--------ccC
Confidence 777766655555555555432 358999999999999862 333332222221 112
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc-----CCCCCCc
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS-----RRPGDYA 348 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~-----~~~~~~~ 348 (393)
.++++|++.++|||++|++..+..+++++... ++.|-..+++.+..|+++.+.++++.+.-+...+ ..-.+..
T Consensus 203 GPlGsG~Q~fpWIHv~DL~~li~~ale~~~v~--GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA 280 (315)
T KOG3019|consen 203 GPLGSGQQWFPWIHVDDLVNLIYEALENPSVK--GVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERA 280 (315)
T ss_pred CcCCCCCeeeeeeehHHHHHHHHHHHhcCCCC--ceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccce
Confidence 23569999999999999999999999987654 5999999999999999999999999775432111 0111222
Q ss_pred ceecC-----HHHHHhhCCCceeccCHHHHHHHHH
Q 016208 349 EVYSD-----PSKIRDELNWTARFTDLQGSLQIAW 378 (393)
Q Consensus 349 ~~~~d-----~~k~~~~lG~~p~~~~~~e~l~~~~ 378 (393)
...+. ..|+. ++||+.++|.+.++++.+.
T Consensus 281 ~~vLeGqKV~Pqral-~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 281 TVVLEGQKVLPQRAL-ELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred eEEeeCCcccchhHh-hcCceeechHHHHHHHHHh
Confidence 22332 34554 5899999999999998864
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-14 Score=135.94 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+++|+||||+|+||++++++|.++|++|++++|.... ..+.... ....+..+.+|++|.+++.+.+ .++|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~---l~~~~~~---~~~~v~~v~~Dvsd~~~v~~~l--~~ID 247 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDK---ITLEING---EDLPVKTLHWQVGQEAALAELL--EKVD 247 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHhh---cCCCeEEEEeeCCCHHHHHHHh--CCCC
Confidence 356899999999999999999999999999999874321 1111111 1234678899999999999988 7899
Q ss_pred EEEEcccccCcc-CCccChHHHHHHHHHHHHHHHHHHHh----cCC----cEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 127 AVMHFAAVAYVG-ESTLEPLRYYHNITSNTLVILEAMAA----HKV----KTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 127 ~Vi~~A~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~----~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
++||+||..... ....+....+++|+.++.++++++.. .+. ..+|.+|+... .+ ....
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~------------~~-~~~~ 314 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV------------NP-AFSP 314 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc------------cC-CCch
Confidence 999999975332 22234567899999999999888743 221 23455554211 01 1134
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEee
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRY 226 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp 226 (393)
.|+.||...+.+..-.....+..+..+.|
T Consensus 315 ~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~ 343 (406)
T PRK07424 315 LYELSKRALGDLVTLRRLDAPCVVRKLIL 343 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 69999999988754322224444444444
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=132.47 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=121.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC-------CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-------NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI 119 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 119 (393)
+..++++||||++.||.+++++|++.|++|++++|.... .+...+....+......+.++.+|+.+++++.++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 456899999999999999999999999999999886321 1111111222222234577899999999998877
Q ss_pred Hhh-----CCCcEEEEcc-cccCc----cC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeeccee-ec
Q 016208 120 FAE-----NAFDAVMHFA-AVAYV----GE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCAT-YG 180 (393)
Q Consensus 120 ~~~-----~~~d~Vi~~A-~~~~~----~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~v-yg 180 (393)
+++ .++|++||+| |.... .. ........+++|+.+...++.++. +.+-.++|++||... ++
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~ 165 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN 165 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence 765 3699999999 64210 11 112234467788887777665554 333358999998543 21
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccC
Q 016208 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIG 231 (393)
Q Consensus 181 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G 231 (393)
.. +......|+.+|...+.+.+.++.+ .|+++..|.||.|--
T Consensus 166 ~~---------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T 210 (305)
T PRK08303 166 AT---------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRS 210 (305)
T ss_pred Cc---------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCcccc
Confidence 11 1112457999999999999887776 579999999988744
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=130.08 Aligned_cols=189 Identities=16% Similarity=0.076 Sum_probs=140.4
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
.......++++|||||+.||.+.++.|..+|.+|+...|.........+.++. ......+.++.+|+.+.+++.++.+.
T Consensus 29 ~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~ 107 (314)
T KOG1208|consen 29 HGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEE 107 (314)
T ss_pred ccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHH
Confidence 33445568999999999999999999999999999999976555555555555 23346788899999999998877654
Q ss_pred -----CCCcEEEEcccccCccC--CccChHHHHHHHHHHHHHH----HHHHHhcCCcEEEEeecceeecC--CCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVGE--STLEPLRYYHNITSNTLVI----LEAMAAHKVKTLIYSSTCATYGE--PDKMPITE 189 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~--~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~V~~SS~~vyg~--~~~~~~~E 189 (393)
...|++|||||+..... .....+..+.+|..|...+ +..++.....|+|++||..- +. .......|
T Consensus 108 ~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~ 186 (314)
T KOG1208|consen 108 FKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGE 186 (314)
T ss_pred HHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccch
Confidence 57999999999886553 2234577888998875555 45555554369999999665 22 11112222
Q ss_pred CCC-CCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCC
Q 016208 190 STP-QKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSD 233 (393)
Q Consensus 190 ~~~-~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~ 233 (393)
... ......|+.||.+......+++++. |+.+..+.||.+..+.
T Consensus 187 ~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~ 233 (314)
T KOG1208|consen 187 KAKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTG 233 (314)
T ss_pred hccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccc
Confidence 222 3333459999999999999998884 7999999999998874
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=121.38 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=117.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
|+++||||+|.||..++++|+++| +.|++++|. .......+...++.....++.++++|+.+.+++.++++. .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999999995 577877775 112223333333333347889999999999998877755 5
Q ss_pred CCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 124 AFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
.+|++||+||........ ......+++|+.+...+.+++...+-.++|++||....-+ ......|
T Consensus 80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------~~~~~~Y 148 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRG-----------SPGMSAY 148 (167)
T ss_dssp SESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSS-----------STTBHHH
T ss_pred cccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccC-----------CCCChhH
Confidence 799999999987643322 2334578899999999998888766679999999665522 2235689
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016208 200 GKAKKMSEDIIIDFSKT 216 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~ 216 (393)
+.+|...+.+.+.++++
T Consensus 149 ~askaal~~~~~~la~e 165 (167)
T PF00106_consen 149 SASKAALRGLTQSLAAE 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998765
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=122.84 Aligned_cols=168 Identities=8% Similarity=0.036 Sum_probs=119.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++++||||++.||.+++++|.++|++|++++|.........+.+.+ ...++..+.+|+.+++++.+++++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA---LTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999988754332222222322 234577888999999998877653
Q ss_pred C-CCcEEEEcccccCcc-CCc----cChHHHHHHHHHHHHHHHH----HHHhcC-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 N-AFDAVMHFAAVAYVG-EST----LEPLRYYHNITSNTLVILE----AMAAHK-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ~-~~d~Vi~~A~~~~~~-~~~----~~~~~~~~~n~~~~~~ll~----~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
. ++|++||+||..... ... ......+..|+.+...++. .+.+.+ ...+|++||...+
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------------ 148 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------------ 148 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC------------
Confidence 3 799999999853221 111 1223355667666655543 343332 3589999984322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+...|+.+|...+.+.+.++.+ .++++..|.||.+-.+
T Consensus 149 --~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 --QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 12467999999999999888775 6899999999987665
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-13 Score=121.28 Aligned_cols=179 Identities=20% Similarity=0.108 Sum_probs=132.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+|.++||||+..||++++++|.+.|.+|++.+|...........+........++..+.+|+++.+++.+++..
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 345679999999999999999999999999999998866554444444444333345788999999988776655433
Q ss_pred ----CCCcEEEEcccccCcc-----CCccChHHHHHHHHHH-HHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSN-TLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~-~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|++||+||..... ......+..+++|+.+ ...+..++. +.+...++++||...+.....
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~---- 159 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG---- 159 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC----
Confidence 4699999999976533 2334456677799984 555555554 334557888888655533211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
. ...|+.+|...+++.+..+.+ .|+++..+-||.|..+-
T Consensus 160 -----~-~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 160 -----S-GVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL 201 (270)
T ss_pred -----C-cccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence 1 278999999999999998877 68999999999988764
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=113.15 Aligned_cols=220 Identities=16% Similarity=0.121 Sum_probs=153.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
+..+||||+..||++++..|.++|++|.+.++.....+.....+.. .++...+.+|+++.+++...+++ ..
T Consensus 15 k~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g----~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ 90 (256)
T KOG1200|consen 15 KVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG----YGDHSAFSCDVSKAHDVQNTLEEMEKSLGT 90 (256)
T ss_pred ceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC----CCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999988765544433333322 24667899999999888775544 47
Q ss_pred CcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHhc----CC--cEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAAH----KV--KTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
+++++||||+.... ....++...+.+|+.++..+.+++.+. +. -.+|.+||.----...
T Consensus 91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~----------- 159 (256)
T KOG1200|consen 91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNF----------- 159 (256)
T ss_pred CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccc-----------
Confidence 99999999988533 245567778889999988887776543 22 2899999943221111
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
...-|+.+|.-.--+.+..+++ .++++..+-||+|--|-.. .+-+..++.+.+..| +-.
T Consensus 160 GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~---------------~mp~~v~~ki~~~iP-mgr-- 221 (256)
T KOG1200|consen 160 GQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTE---------------AMPPKVLDKILGMIP-MGR-- 221 (256)
T ss_pred cchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhh---------------hcCHHHHHHHHccCC-ccc--
Confidence 2566777776443333333222 6899999999999887533 566788888888776 333
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
+-..+|+|..++++...... ..+..+.+.++
T Consensus 222 -------------~G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 222 -------------LGEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred -------------cCCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 33579999999988753321 12345555443
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=124.60 Aligned_cols=151 Identities=19% Similarity=0.103 Sum_probs=114.9
Q ss_pred HHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--CCCcEEEEcccccCccCCcc
Q 016208 65 AALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--NAFDAVMHFAAVAYVGESTL 142 (393)
Q Consensus 65 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~A~~~~~~~~~~ 142 (393)
++++|+++|++|++++|..... ....++.+|+.+.+++.+++++ .++|+|||+||... ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~--------------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGM--------------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchh--------------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 4788999999999998854321 1134678999999999998865 37999999999753 24
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCC----------------CCCCCCChHHHHHH
Q 016208 143 EPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITES----------------TPQKPINPYGKAKK 204 (393)
Q Consensus 143 ~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~----------------~~~~p~~~Y~~sK~ 204 (393)
.....+++|+.++..+++.+... ...++|++||...|+.....+..|. .+..+..+|+.+|.
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 56788999999999999998754 2359999999988864322111111 24445689999999
Q ss_pred HHHHHHHHHH-h---hCCCcEEEEeeccccCCC
Q 016208 205 MSEDIIIDFS-K---TTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 205 ~~E~~~~~~~-~---~~g~~~~ilRp~~v~G~~ 233 (393)
..+.+.+.++ . ..|+++..|+||.+.++-
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 9999998887 3 368999999999998763
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-12 Score=118.76 Aligned_cols=229 Identities=10% Similarity=-0.012 Sum_probs=140.7
Q ss_pred CCCCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhh--------hcCC--CCccEEEEccC--C
Q 016208 46 EPGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQE--------LFPQ--PGQLQFIYADL--G 111 (393)
Q Consensus 46 ~~~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~Dl--~ 111 (393)
...+|+++|||| +..||.++++.|.++|.+|++ .|.....+.....++. +... ......+.+|+ .
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 466799999999 899999999999999999988 5432222221111111 0000 01245678888 3
Q ss_pred CH------------------HHHHHHHhh-----CCCcEEEEcccccCc------cCCccChHHHHHHHHHHHHHHHHHH
Q 016208 112 DA------------------KAVNKIFAE-----NAFDAVMHFAAVAYV------GESTLEPLRYYHNITSNTLVILEAM 162 (393)
Q Consensus 112 ~~------------------~~~~~~~~~-----~~~d~Vi~~A~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~ 162 (393)
+. +++.++++. .++|++|||||.... .....+....+++|+.+...+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 22 255555443 469999999974321 1123345667889999988887776
Q ss_pred Hhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCC
Q 016208 163 AAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPE 235 (393)
Q Consensus 163 ~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~ 235 (393)
... .-.++|++||....-.. ... ..|+.+|...+.+.+.++.+ .|+++..|-||.+--+-..
T Consensus 165 ~p~m~~~G~II~isS~a~~~~~-----------p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~ 233 (303)
T PLN02730 165 GPIMNPGGASISLTYIASERII-----------PGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAK 233 (303)
T ss_pred HHHHhcCCEEEEEechhhcCCC-----------CCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhh
Confidence 543 12589999996543111 113 37999999999999988875 3799999999988654211
Q ss_pred CCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecC
Q 016208 236 GRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGT 314 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~ 314 (393)
. + ..............| ...+...+|++.++++++.... ...++.+.+.+
T Consensus 234 ~-~------------~~~~~~~~~~~~~~p----------------l~r~~~peevA~~~~fLaS~~a~~itG~~l~vdG 284 (303)
T PLN02730 234 A-I------------GFIDDMIEYSYANAP----------------LQKELTADEVGNAAAFLASPLASAITGATIYVDN 284 (303)
T ss_pred c-c------------cccHHHHHHHHhcCC----------------CCCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence 0 0 001111111111111 1124578999999999887432 22345666654
Q ss_pred C
Q 016208 315 G 315 (393)
Q Consensus 315 ~ 315 (393)
+
T Consensus 285 G 285 (303)
T PLN02730 285 G 285 (303)
T ss_pred C
Confidence 4
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=123.94 Aligned_cols=216 Identities=16% Similarity=0.136 Sum_probs=148.1
Q ss_pred cCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh------CCCcE
Q 016208 56 GGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------NAFDA 127 (393)
Q Consensus 56 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------~~~d~ 127 (393)
|++ +.||.+++++|+++|++|++++|.........+.+... .+.+++.+|+.+.+++.+++++ .++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE----YGAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH----TTSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH----cCCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 99999999999999999999988654322223333322 2345799999999998888765 57999
Q ss_pred EEEcccccCc----cCC----ccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 128 VMHFAAVAYV----GES----TLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 128 Vi~~A~~~~~----~~~----~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
+||+++.... ... .......++.|+.+...+++.+... .-..+|++||...... .....
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~-----------~~~~~ 145 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRP-----------MPGYS 145 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSB-----------STTTH
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhccc-----------Cccch
Confidence 9999997654 111 2234557778888888887777432 1257999998654322 22356
Q ss_pred hHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 198 PYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
.|+.+|...+.+.+.++.+ .|+++..|.||.+..+.... -.....+.....+..|
T Consensus 146 ~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-------------~~~~~~~~~~~~~~~p-------- 204 (241)
T PF13561_consen 146 AYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-------------IPGNEEFLEELKKRIP-------- 204 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-------------HHTHHHHHHHHHHHST--------
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-------------cccccchhhhhhhhhc--------
Confidence 9999999999999887766 48999999999987542100 0112334444444433
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+|+++.+++... ..-.|+++.+.+|
T Consensus 205 --------l~r~~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 205 --------LGRLGTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp --------TSSHBEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred --------cCCCcCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 122568999999999999854 2334577777544
|
... |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=108.64 Aligned_cols=168 Identities=16% Similarity=0.144 Sum_probs=122.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+.+||||||+..||..|+++|++.|.+|++..|.... +.+.....+.+....+|+.|.++.+++++.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~-------L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEER-------LAEAKAENPEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHH-------HHHHHhcCcchheeeecccchhhHHHHHHHHHhh
Confidence 345799999999999999999999999999998774322 222222247888899999999877766543
Q ss_pred -CCCcEEEEcccccCccCC------ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES------TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~------~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
-..+++|||||+...-.. ...-...+++|+.++.+|..... +..-..+|.+||.-.|-
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv----------- 144 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV----------- 144 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC-----------
Confidence 368999999998743211 12234567789999888776654 33344799999977663
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHh---hCCCcEEEEeeccccCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSK---TTNMAVMILRYFNVIGS 232 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~G~ 232 (393)
|.....-|..+|+....+...+.. ..+++++=+-|+.|--+
T Consensus 145 Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 233355799999998887655443 36889999999988654
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=110.53 Aligned_cols=166 Identities=19% Similarity=0.238 Sum_probs=117.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
+++||||+|.||..+++.|.++|. +|+++.|.........+.+.++......+.++.+|++|++++.++++. ..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999975 889998874333344455555554457889999999999999999876 26
Q ss_pred CcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee-ecCCCCCCCCCCCCCCCCChH
Q 016208 125 FDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT-YGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v-yg~~~~~~~~E~~~~~p~~~Y 199 (393)
++.|||+|+....... .......+..-+.++.+|.++......+.+|.+||... +|.. + ...|
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~-g-----------q~~Y 149 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP-G-----------QSAY 149 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T-T-----------BHHH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc-c-----------hHhH
Confidence 7899999997643222 22234456677889999999998888899999999765 4443 2 5789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccc
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v 229 (393)
+..-...+.+...... .|++++.+..+..
T Consensus 150 aaAN~~lda~a~~~~~-~g~~~~sI~wg~W 178 (181)
T PF08659_consen 150 AAANAFLDALARQRRS-RGLPAVSINWGAW 178 (181)
T ss_dssp HHHHHHHHHHHHHHHH-TTSEEEEEEE-EB
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEEcccc
Confidence 9999999988887554 6899988887653
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=118.67 Aligned_cols=168 Identities=20% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHH-HHHhhC-
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVN-KIFAEN- 123 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~-~~~~~~- 123 (393)
...++.|||+||||.+|+-+++.|+++|+.|+++.|.......... ..........+..|.....+.. ...+..
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~ 151 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLVEAVP 151 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhhhhcc
Confidence 4567899999999999999999999999999999875444332222 1111234445555554443333 332211
Q ss_pred -CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC---CChH
Q 016208 124 -AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP---INPY 199 (393)
Q Consensus 124 -~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p---~~~Y 199 (393)
...+++-+++-.. ..+ +...-+.+.-.++.|++++|+.+|++|+|++||.+.-.... +++. ...+
T Consensus 152 ~~~~~v~~~~ggrp--~~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~--------~~~~~~~~~~~ 220 (411)
T KOG1203|consen 152 KGVVIVIKGAGGRP--EEE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQ--------PPNILLLNGLV 220 (411)
T ss_pred ccceeEEecccCCC--Ccc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCC--------Cchhhhhhhhh
Confidence 2345555554321 111 22234457788999999999999999999998865532221 1111 2245
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCC
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGS 232 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~ 232 (393)
-.+|..+|+++.+ .|++++|+|++...-.
T Consensus 221 ~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~ 249 (411)
T KOG1203|consen 221 LKAKLKAEKFLQD----SGLPYTIIRPGGLEQD 249 (411)
T ss_pred hHHHHhHHHHHHh----cCCCcEEEeccccccC
Confidence 5888899988886 8999999999987654
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=108.42 Aligned_cols=164 Identities=15% Similarity=0.059 Sum_probs=119.3
Q ss_pred CCcEEEEEcC-CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGG-AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.++|||||+ +|.||.+|+++|.+.|+.|+++.|....-..+ . . ..++.....|+.+++++.+...+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L----~---~-~~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQL----A---I-QFGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhH----H---H-hhCCeeEEeccCChHHHHHHHHHHhhC
Confidence 4478999975 69999999999999999999998854332211 1 1 14788999999999988766533
Q ss_pred --CCCcEEEEcccccC-cc---CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAY-VG---ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~-~~---~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.+.|+++|+||..- .+ ......+..+++|+-|..++.++.. +++ ..+|+++|..+|-.-+.
T Consensus 78 ~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~~~vpfpf-------- 148 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLAGVVPFPF-------- 148 (289)
T ss_pred CCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEecceeEEeccch--------
Confidence 46899999999652 11 1223456688899888666655543 333 48999999888844322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIG 231 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G 231 (393)
...|..||++...+.+.+.-+ .|++++.+-+|.|--
T Consensus 149 ---~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 149 ---GSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred ---hhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 568999999999888776444 678888888777643
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-12 Score=114.11 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=121.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC--chhhhhhhhhcCCC-CccEEEEccCCC-HHHHHHHHhh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--MGAVKVLQELFPQP-GQLQFIYADLGD-AKAVNKIFAE 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~-~~~~~~~~Dl~~-~~~~~~~~~~ 122 (393)
..+++|+||||++.||.++++.|.++|+.|+++.+..... ....+... ... ..+.+...|+++ .+++..+++.
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dvs~~~~~v~~~~~~ 79 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK---EAGGGRAAAVAADVSDDEESVEALVAA 79 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH---hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence 4568999999999999999999999999988887754431 11111111 111 256778899998 8777655544
Q ss_pred -----CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+||+... ..........+++|+.+...+.+.+... ..+++|++||.... ....
T Consensus 80 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~------- 151 (251)
T COG1028 80 AEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPP------- 151 (251)
T ss_pred HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCC-------
Confidence 359999999997542 1123455668889999888877744322 11289999996654 3221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI 230 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~ 230 (393)
....|+.||...+.+.+.++.+ .|+++..+.||.+-
T Consensus 152 ---~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 152 ---GQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 0579999999999999888855 68999999999544
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=107.42 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=121.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++.|+||||+-.||--|+++|++. |.++++..+..+. ...+.+........+++.++.|+++.+++..+.++
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e--~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPE--KAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChH--HhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 3467999999999999999999976 6677665543322 22344444433458999999999999888776655
Q ss_pred ---CCCcEEEEcccccCccCC-----ccChHHHHHHHHHHHHHHHHHH----HhcCCc-----------EEEEeecceee
Q 016208 123 ---NAFDAVMHFAAVAYVGES-----TLEPLRYYHNITSNTLVILEAM----AAHKVK-----------TLIYSSTCATY 179 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~~-----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~-----------~~V~~SS~~vy 179 (393)
.+.+++|++||+...-.. .......+++|+.++..+.+.+ ++...+ .+|++||.+.-
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s 159 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS 159 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence 689999999997743221 1224557889988876655443 222222 68889885443
Q ss_pred cCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc
Q 016208 180 GEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI 230 (393)
Q Consensus 180 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~ 230 (393)
.. .....+...|..||.+.....+..+-+ .++-++.+.||+|-
T Consensus 160 --~~------~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~ 205 (249)
T KOG1611|consen 160 --IG------GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQ 205 (249)
T ss_pred --cC------CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEE
Confidence 11 123446789999999999999887655 46788889998874
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-11 Score=109.08 Aligned_cols=172 Identities=19% Similarity=0.163 Sum_probs=130.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-----A 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 124 (393)
.+|+||||+..+|..++..+..+|..|+++.|+.+....+.+.++-.... .++.+..+|+.|++++...+++. .
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~-~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQV-EDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhcc-ceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 69999999999999999999999999999999776666665555443322 34779999999999999888764 6
Q ss_pred CcEEEEcccccCccCCccC----hHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGESTLE----PLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~----~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|.+|||||...+...... .+...++|..++.+++.++... . ..+++.+||...-- +...
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~-----------~i~G 181 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML-----------GIYG 181 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc-----------Cccc
Confidence 9999999998765544333 3457779999999988776533 1 23788888854421 2233
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
.+.|..+|...-.+.....++ .|++++..-|+.+--|+
T Consensus 182 ysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpG 222 (331)
T KOG1210|consen 182 YSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPG 222 (331)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCc
Confidence 678888888777666666555 68999999998888775
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=105.35 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=125.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
..++||..+|.||||-.|+-|++.+++.+ ..|+++.|........ ...+.....|....+++...+
T Consensus 14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at----------~k~v~q~~vDf~Kl~~~a~~~-- 81 (238)
T KOG4039|consen 14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT----------DKVVAQVEVDFSKLSQLATNE-- 81 (238)
T ss_pred HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc----------cceeeeEEechHHHHHHHhhh--
Confidence 34788999999999999999999999998 4899998853222211 145667788998889888888
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHH
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA 202 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~s 202 (393)
+++|+.|.+-|-+... ...+..+++.-.....+.++|++.|++.||.+||.++-.. ..-.|-..
T Consensus 82 qg~dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~s-------------SrFlY~k~ 145 (238)
T KOG4039|consen 82 QGPDVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPS-------------SRFLYMKM 145 (238)
T ss_pred cCCceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcc-------------cceeeeec
Confidence 8999999887755321 1234456666777888999999999999999999655321 23468889
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCC
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLG 239 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~ 239 (393)
|...|+-+.++.-+ +++|+|||.+.|.++....|
T Consensus 146 KGEvE~~v~eL~F~---~~~i~RPG~ll~~R~esr~g 179 (238)
T KOG4039|consen 146 KGEVERDVIELDFK---HIIILRPGPLLGERTESRQG 179 (238)
T ss_pred cchhhhhhhhcccc---EEEEecCcceeccccccccc
Confidence 99999988885332 79999999999998765544
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=109.76 Aligned_cols=214 Identities=16% Similarity=0.133 Sum_probs=150.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
.+.++.|+.||.|.++++.....|+.|-.+.|+..+.. .+. -...+.++.+|.....-+...+ .++..++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~--l~s------w~~~vswh~gnsfssn~~k~~l--~g~t~v~ 122 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQT--LSS------WPTYVSWHRGNSFSSNPNKLKL--SGPTFVY 122 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcch--hhC------CCcccchhhccccccCcchhhh--cCCcccH
Confidence 57999999999999999999999999999988654321 111 1256778888887666566666 7888888
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
-+++-+ .+......+|-....+-..++.++|+++|+|+|-. -||-. +.. ...|-.+|..+|..
T Consensus 123 e~~ggf------gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~-d~~~~---------~~i-~rGY~~gKR~AE~E 185 (283)
T KOG4288|consen 123 EMMGGF------GNIILMDRINGTANINAVKAAAKAGVPRFVYISAH-DFGLP---------PLI-PRGYIEGKREAEAE 185 (283)
T ss_pred HHhcCc------cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhh-hcCCC---------Ccc-chhhhccchHHHHH
Confidence 888753 34566677888888888999999999999999963 22211 122 34899999999998
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+... ++.+-++||||++||.+.-+. ....+..-|..+....+.+.+....+++. +.-..+.+.++
T Consensus 186 ll~~---~~~rgiilRPGFiyg~R~v~g----~~~pL~~vg~pl~~~~~~a~k~~~kLp~l--------g~l~~ppvnve 250 (283)
T KOG4288|consen 186 LLKK---FRFRGIILRPGFIYGTRNVGG----IKSPLHTVGEPLEMVLKFALKPLNKLPLL--------GPLLAPPVNVE 250 (283)
T ss_pred HHHh---cCCCceeeccceeecccccCc----ccccHHhhhhhHHHHHHhhhchhhcCccc--------ccccCCCcCHH
Confidence 8873 678999999999999853321 22222222223333333332111114443 45567889999
Q ss_pred HHHHHHHHHHhcCCCC
Q 016208 290 DLVDAHVLALANAKPG 305 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~ 305 (393)
++|.+.+.++++++-.
T Consensus 251 ~VA~aal~ai~dp~f~ 266 (283)
T KOG4288|consen 251 SVALAALKAIEDPDFK 266 (283)
T ss_pred HHHHHHHHhccCCCcC
Confidence 9999999999977543
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-11 Score=110.23 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=133.8
Q ss_pred CCCCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCC------CC--Cchhhhh-------------hhhhcCCCC
Q 016208 45 HEPGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLS------RG--NMGAVKV-------------LQELFPQPG 101 (393)
Q Consensus 45 ~~~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~------~~--~~~~~~~-------------~~~~~~~~~ 101 (393)
....+++++||||+ ..||+++++.|.++|.+|++.++.. +. ....... ...+..+-.
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 34567899999995 8999999999999999999865421 00 0000000 000000001
Q ss_pred ccEEEEccCCC--------HHHHHHHHhh-----CCCcEEEEcccccC--cc----CCccChHHHHHHHHHHHHHHHHHH
Q 016208 102 QLQFIYADLGD--------AKAVNKIFAE-----NAFDAVMHFAAVAY--VG----ESTLEPLRYYHNITSNTLVILEAM 162 (393)
Q Consensus 102 ~~~~~~~Dl~~--------~~~~~~~~~~-----~~~d~Vi~~A~~~~--~~----~~~~~~~~~~~~n~~~~~~ll~~~ 162 (393)
..+-+..|+.+ .+++.++++. .++|++|||||... .. ....+....+++|+.+..++++++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 11222222222 1224433322 46999999998532 11 122345667789999998888777
Q ss_pred Hhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCC
Q 016208 163 AAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPE 235 (393)
Q Consensus 163 ~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~ 235 (393)
... .-.++|++||....-..+ .. ..|+.+|...+.+.+.++.+ .|+++..|.||.+--+...
T Consensus 164 ~p~m~~~G~ii~iss~~~~~~~p-----------~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~ 232 (299)
T PRK06300 164 GPIMNPGGSTISLTYLASMRAVP-----------GYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGK 232 (299)
T ss_pred HHHhhcCCeEEEEeehhhcCcCC-----------CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhh
Confidence 643 224788888754431111 12 27999999999999888765 3899999999988654211
Q ss_pred CCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecC
Q 016208 236 GRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGT 314 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~ 314 (393)
. . ..............| + ..+...+|++.++++++... ....++++.+.+
T Consensus 233 ~-~------------~~~~~~~~~~~~~~p-~---------------~r~~~peevA~~v~~L~s~~~~~itG~~i~vdG 283 (299)
T PRK06300 233 A-I------------GFIERMVDYYQDWAP-L---------------PEPMEAEQVGAAAAFLVSPLASAITGETLYVDH 283 (299)
T ss_pred c-c------------cccHHHHHHHHhcCC-C---------------CCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 0 0 000111111111111 1 12457899999999988743 223346776654
Q ss_pred C
Q 016208 315 G 315 (393)
Q Consensus 315 ~ 315 (393)
+
T Consensus 284 G 284 (299)
T PRK06300 284 G 284 (299)
T ss_pred C
Confidence 4
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=104.15 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=124.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
+++++++||+.|.||..+.++|+++|..+.++.-+... .+....++...+. ..+-++++|+.+..++++++++
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-~~a~akL~ai~p~-~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-PEAIAKLQAINPS-VSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-HHHHHHHhccCCC-ceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999988887643332 3444555554443 6889999999999999988876
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHH----HHHHHHHHHhcC---CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSN----TLVILEAMAAHK---VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
..+|++||.||+.. +.+.+.++.+|+.+ |...+..+.+.. -.-+|..|| |+|-. |...
T Consensus 82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsS--v~GL~---------P~p~ 146 (261)
T KOG4169|consen 82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSS--VAGLD---------PMPV 146 (261)
T ss_pred CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecc--ccccC---------cccc
Confidence 57999999999874 56788888888655 555677765442 346888999 44432 2333
Q ss_pred CChHHHHHHHHHHHHHHHHh-----hCCCcEEEEeecccc
Q 016208 196 INPYGKAKKMSEDIIIDFSK-----TTNMAVMILRYFNVI 230 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~ 230 (393)
...|+.||+..-.+.+.++. +.|+++..+.||.+-
T Consensus 147 ~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~ 186 (261)
T KOG4169|consen 147 FPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR 186 (261)
T ss_pred chhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch
Confidence 66899999987776666333 369999999998753
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-11 Score=105.84 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=123.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-------
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------- 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------- 122 (393)
+-|||||.-...|..|+++|.++|+.|++-...+...+.+..... +++...+..|+++++++.++.+-
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~-----s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK-----SPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc-----CCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 779999999999999999999999999997643333332222211 47888999999999998877542
Q ss_pred CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.+.-.||||||+..... ...+....+++|+.|+..+..+. +++. .|+|++||.+- . .+.
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~G--R---------~~~ 172 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLG--R---------VAL 172 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEeccccc--C---------ccC
Confidence 56779999999653221 23355668889999977776655 4443 59999999433 2 223
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....+|..||+..|.+......+ +|+++.+|-|| +|-.
T Consensus 173 p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 173 PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 34789999999999998877666 89999999999 4443
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-11 Score=135.08 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=129.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCC----------------------------------------
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGN---------------------------------------- 86 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---------------------------------------- 86 (393)
..+++|||||++.||..++++|.++ |.+|++++|+....
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4579999999999999999999998 69999999862100
Q ss_pred ----chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CCCcEEEEcccccCcc----CCccChHHHHHHHHHH
Q 016208 87 ----MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSN 154 (393)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~ 154 (393)
....+.+..+......+.++.+|++|.+++.+++++ .++|+|||+||+.... ....+....+++|+.+
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 000111222222235688999999999998877755 2699999999976432 2234456688999999
Q ss_pred HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhC-CCcEEEEeeccccCC
Q 016208 155 TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNVIGS 232 (393)
Q Consensus 155 ~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~G~ 232 (393)
+.++++++.....+++|++||...+-... ....|+.+|...+.+.+.++.+. ++++..+.||.+-|+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~~-----------gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdtg 2223 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYGNT-----------GQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDGG 2223 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCCCC-----------CcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecCC
Confidence 99999999877667899999966542222 25689999999999888877663 689999999887654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.3e-12 Score=102.18 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=146.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NA 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~ 124 (393)
...++.|++||+.-.||+.++..|.+.|.+|+++.|.... +...+.+ .+.-+..+.+|+.+-+.+.+++.. ..
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~---L~sLV~e---~p~~I~Pi~~Dls~wea~~~~l~~v~p 77 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEAN---LLSLVKE---TPSLIIPIVGDLSAWEALFKLLVPVFP 77 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHH---HHHHHhh---CCcceeeeEecccHHHHHHHhhcccCc
Confidence 3456899999999999999999999999999999875433 2233322 134488999999999888888754 35
Q ss_pred CcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|.++|+||+....++.. ..+..|++|+.+..++.+... ..+ ...+|.+||.+.-- +...
T Consensus 78 idgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R-----------~~~n 146 (245)
T KOG1207|consen 78 IDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR-----------PLDN 146 (245)
T ss_pred hhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc-----------ccCC
Confidence 899999999764333322 233456688888777766632 222 23699999965531 2334
Q ss_pred CChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
.+.|..+|.+.+...+-++.+. .+++..+.|..|+-.-..-.|.+.++. ...+.. +++
T Consensus 147 HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~-------------k~mL~r---iPl--- 207 (245)
T KOG1207|consen 147 HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKK-------------KKMLDR---IPL--- 207 (245)
T ss_pred ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhc-------------cchhhh---Cch---
Confidence 7889999999999998888874 478999999998755322223222221 111112 222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK 303 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~ 303 (393)
--|--++.++.|+.+++.+..
T Consensus 208 ----------~rFaEV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 208 ----------KRFAEVDEVVNAVLFLLSDNS 228 (245)
T ss_pred ----------hhhhHHHHHHhhheeeeecCc
Confidence 237789999999999888543
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=106.30 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=123.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.||.|+|++|.||++++..|...+ .++..+++.. .......+.+. .. .....++.+.+++.+.+ .++|+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~---~~--~~~i~~~~~~~d~~~~l--~~aDi 89 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI---NT--PAQVRGFLGDDQLGDAL--KGADL 89 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC---Cc--CceEEEEeCCCCHHHHc--CCCCE
Confidence 699999999999999999999765 4899998755 22111111111 11 11223444444567778 89999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC--CCCCCCCCCCCCCChHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD--KMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|||+||.... ........+..|...+.++++.+.+++.+.+|+++|.=+-+... ...+.+...+.|...||.+++.
T Consensus 90 VVitAG~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD 167 (323)
T PLN00106 90 VIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD 167 (323)
T ss_pred EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence 9999997543 23457788999999999999999999999999999832211000 0011134566778899999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
.+++-..+++..|++...++ +.|+|.+
T Consensus 168 s~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 168 VVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred HHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 99999999999999999997 7777764
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=105.04 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=125.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
-..|+||.|+|++|.||+.++..|..++ +++..+++ .. .......+.+. .. .....+..++.++.+.+ .
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di-~~-~~g~a~Dl~~~---~~--~~~v~~~td~~~~~~~l--~ 75 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI-VG-APGVAADLSHI---DT--PAKVTGYADGELWEKAL--R 75 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec-CC-Ccccccchhhc---Cc--CceEEEecCCCchHHHh--C
Confidence 4567899999999999999999998655 68999988 22 11111112111 11 23334555555556677 8
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC--CCCCCCCCCCCCChHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK--MPITESTPQKPINPYGK 201 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~--~~~~E~~~~~p~~~Y~~ 201 (393)
++|+||++||.... ........+..|+..+.++++++++++++++|+++|.-+-....- ..+.+...+.|...||.
T Consensus 76 gaDvVVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~ 153 (321)
T PTZ00325 76 GADLVLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGV 153 (321)
T ss_pred CCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeec
Confidence 99999999997532 234567889999999999999999999999999999666433211 01234556677788888
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
+-+-.-++-...++..+++...++ +.|+|.+
T Consensus 154 g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 154 TTLDVVRARKFVAEALGMNPYDVN-VPVVGGH 184 (321)
T ss_pred hhHHHHHHHHHHHHHhCcChhheE-EEEEeec
Confidence 856666666667777889888888 8888875
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-10 Score=79.17 Aligned_cols=62 Identities=48% Similarity=0.888 Sum_probs=44.5
Q ss_pred HHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCC
Q 016208 326 ACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388 (393)
Q Consensus 326 ~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 388 (393)
++.++.|+++++.+.+.+++++...+.|++|++++|||+|++ +++++++++.+|+++|+.+|
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~-~L~~~i~~~w~W~~~np~Gy 62 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKY-SLEDMIRDAWNWQKKNPNGY 62 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SS-SHHHHHHHHHHHHHHSTTTT
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCC-CHHHHHHHHHHHHHHCcCCC
Confidence 467889999999999999999999999999999999999999 99999999999999999987
|
... |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=97.06 Aligned_cols=171 Identities=16% Similarity=0.170 Sum_probs=122.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH----HHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA----VNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~~~ 125 (393)
.-..|||||..||++.+++|.++|.+|+.++|...+.+...+.+.+... ..++++..|.++.+. +.+.+...++
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~--vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK--VEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC--cEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 7899999999999999999999999999999976666666666655433 467788889886654 6666655678
Q ss_pred cEEEEcccccCc--cCCccChH----HHHHHHHHHH----HHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYV--GESTLEPL----RYYHNITSNT----LVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 126 d~Vi~~A~~~~~--~~~~~~~~----~~~~~n~~~~----~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|||+|.... ......+. ..+.+|+.++ +.++-.+.+.+..-+|++||.+-. -|..-
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~-----------~p~p~ 196 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL-----------IPTPL 196 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc-----------ccChh
Confidence 899999998752 11111222 2333565554 444555555555679999995432 12223
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
...|+.+|...+.....+.++ .|+.+-.+-|..|-.+.
T Consensus 197 ~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 197 LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 678999999888776665555 68999999998888764
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=90.23 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=66.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++.++||||+|.||.++++.|.+.|++|++++|.........+.+. .....+.++.+|+++.+++.+++++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEIT---NLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999875432222222222 2234567889999999988876543
Q ss_pred -CCCcEEEEcccccCc
Q 016208 123 -NAFDAVMHFAAVAYV 137 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~ 137 (393)
.++|++||+||....
T Consensus 91 ~G~iDilVnnAG~~~~ 106 (169)
T PRK06720 91 FSRIDMLFQNAGLYKI 106 (169)
T ss_pred cCCCCEEEECCCcCCC
Confidence 479999999997653
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=92.59 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=76.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+++|||||||+|. +++.|.+.|++|++++|.... .......+. ....+.++.+|+.|.+++.++++. .+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~---~~~l~~~l~-~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVK---LENVKREST-TPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHH---HHHHHHHhh-cCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 58999999998876 999999999999998874322 111222121 135788899999999998887754 35
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc----EEEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK----TLIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~----~~V~~S 174 (393)
+|++|+.+- +.++.++.++|++.+++ ++||+=
T Consensus 76 id~lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~ 111 (177)
T PRK08309 76 FDLAVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVL 111 (177)
T ss_pred CeEEEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEe
Confidence 778776653 33577899999999998 899943
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-09 Score=84.83 Aligned_cols=216 Identities=17% Similarity=0.172 Sum_probs=144.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
-..+||||.+.+|.+-+++|.+.|..|..++....+..+..+.+ ..++-+.+.|++..+++..++.. .+
T Consensus 10 lvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel------g~~~vf~padvtsekdv~aala~ak~kfgr 83 (260)
T KOG1199|consen 10 LVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL------GGKVVFTPADVTSEKDVRAALAKAKAKFGR 83 (260)
T ss_pred eeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh------CCceEEeccccCcHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999987665555444333 46889999999999999988765 46
Q ss_pred CcEEEEcccccCcc------C----CccChHHHHHHHHHHHHHHHHHHHh--------cCCc--EEEEeecceeecCCCC
Q 016208 125 FDAVMHFAAVAYVG------E----STLEPLRYYHNITSNTLVILEAMAA--------HKVK--TLIYSSTCATYGEPDK 184 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~------~----~~~~~~~~~~~n~~~~~~ll~~~~~--------~~~~--~~V~~SS~~vyg~~~~ 184 (393)
.|+.+||||+...- . ...+....+++|+.+|.|++..-.. ++-+ .+|.+.|.+.|...-+
T Consensus 84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~g 163 (260)
T KOG1199|consen 84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTG 163 (260)
T ss_pred eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccc
Confidence 89999999965211 0 1112233556899999998765431 1112 4777778777866544
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
...|+.||...--+..-.++. .|+++..+-||.+--|-- +.+-......+.
T Consensus 164 -----------qaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpll---------------sslpekv~~fla 217 (260)
T KOG1199|consen 164 -----------QAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLL---------------SSLPEKVKSFLA 217 (260)
T ss_pred -----------hhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhh---------------hhhhHHHHHHHH
Confidence 678999998776655444433 588999998876543311 023333333344
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEec
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVG 313 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~ 313 (393)
...| .+- .+-|..+-+..+-.+++++-.. ++++-+.
T Consensus 218 ~~ip-fps--------------rlg~p~eyahlvqaiienp~ln-gevir~d 253 (260)
T KOG1199|consen 218 QLIP-FPS--------------RLGHPHEYAHLVQAIIENPYLN-GEVIRFD 253 (260)
T ss_pred HhCC-Cch--------------hcCChHHHHHHHHHHHhCcccC-CeEEEec
Confidence 4334 221 1345667777766677776553 4666653
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=86.60 Aligned_cols=180 Identities=12% Similarity=0.175 Sum_probs=124.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCe-----EEEEeCCCCCCchhhhhhhhhcCCC-CccEEEEccCCCHHHHHHHHhh-
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYR-----VTIVDNLSRGNMGAVKVLQELFPQP-GQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~-----V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
+.++|||+++.+|-+|+.+|++...+ +.+.+|..++.++..+.+.+..+++ ..++++..|+++..++..+..+
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di 83 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDI 83 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHH
Confidence 67999999999999999999988654 5666787777777777777766542 5778999999999988877654
Q ss_pred ----CCCcEEEEcccccCccC-------------------------------CccChHHHHHHHHHHHHHHHHHHHh---
Q 016208 123 ----NAFDAVMHFAAVAYVGE-------------------------------STLEPLRYYHNITSNTLVILEAMAA--- 164 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~-------------------------------~~~~~~~~~~~n~~~~~~ll~~~~~--- 164 (393)
+..|.|+-+||+...+. +...-...++.|+-|...++.....
T Consensus 84 ~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll~ 163 (341)
T KOG1478|consen 84 KQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLC 163 (341)
T ss_pred HHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHhh
Confidence 67999999999875441 1122234566777776655544332
Q ss_pred -cCCcEEEEeecceeecCCCCCCCCCCC-CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 165 -HKVKTLIYSSTCATYGEPDKMPITEST-PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 165 -~~~~~~V~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...+.+|.+||...-.. ..--||- ......+|.-||.+.+..-.+..+. .|+...++.||.....
T Consensus 164 ~~~~~~lvwtSS~~a~kk---~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 164 HSDNPQLVWTSSRMARKK---NLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred cCCCCeEEEEeecccccc---cCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 23458999999554321 1222222 3345779999999999876665443 3566677777665543
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=86.38 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=110.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH---hh--C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF---AE--N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~--~ 123 (393)
.+-|||||+|-.||.-++..+.+++.++....+...... .+.+.... ........+|+.....+.++. ++ .
T Consensus 6 r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~--gd~~v~~~g~~~e~~~l~al~e~~r~k~g 81 (253)
T KOG1204|consen 6 RKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAY--GDDFVHVVGDITEEQLLGALREAPRKKGG 81 (253)
T ss_pred ceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEe--cCCcceechHHHHHHHHHHHHhhhhhcCC
Confidence 368999999999999999999999876655433221111 11111110 012233445555544333332 22 3
Q ss_pred CCcEEEEcccccCcc-------CCccChHHHHHHHHHHHHHHHHHHHhc--C---CcEEEEeecceeecCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVG-------ESTLEPLRYYHNITSNTLVILEAMAAH--K---VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~-------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~---~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
+-|.||||||...+- .....+...|+.|+.+...+...+... + .+-+|++||.+.- -
T Consensus 82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav-----------~ 150 (253)
T KOG1204|consen 82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV-----------R 150 (253)
T ss_pred ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh-----------c
Confidence 589999999965321 233456778999999888877766533 2 2579999996653 2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccc
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNV 229 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v 229 (393)
|.+....|+.+|++-+.+.+..+.+. ++++..++||.|
T Consensus 151 p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvv 190 (253)
T KOG1204|consen 151 PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVV 190 (253)
T ss_pred cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcc
Confidence 34446789999999999999988773 789999999876
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=94.20 Aligned_cols=98 Identities=29% Similarity=0.377 Sum_probs=77.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
||+|+|+|+ |+||+.++..|+++| .+|++.+|+..+..+. .... ..+++.+..|+.+.+.+.+++ .+.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i----~~~~--~~~v~~~~vD~~d~~al~~li--~~~d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARI----AELI--GGKVEALQVDAADVDALVALI--KDFDL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHH----Hhhc--cccceeEEecccChHHHHHHH--hcCCE
Confidence 789999997 999999999999998 8999998854332222 1111 248999999999999999999 67799
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
|||++.... ...++++|.++|+ .+|=+|
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV-DYVDTS 99 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC-CEEEcc
Confidence 999997532 2378999999988 566544
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=88.25 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=59.8
Q ss_pred CCcEEEEEcCC----------------ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC
Q 016208 48 GVTHVLVTGGA----------------GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111 (393)
Q Consensus 48 ~~~~IlItGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 111 (393)
.+++||||+|. ||+|++|+++|+.+|++|+++++....... .+ ........+.++..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~----~~~~~~~~V~s~~d 74 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI----NNQLELHPFEGIID 74 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc----CCceeEEEEecHHH
Confidence 45899999885 999999999999999999998764321110 00 00123344666444
Q ss_pred CHHHHHHHHhhCCCcEEEEcccccCccC
Q 016208 112 DAKAVNKIFAENAFDAVMHFAAVAYVGE 139 (393)
Q Consensus 112 ~~~~~~~~~~~~~~d~Vi~~A~~~~~~~ 139 (393)
..+.+.+++.+.++|+|||+||+.++..
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAvsD~~~ 102 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAGSDWVV 102 (229)
T ss_pred HHHHHHHHhcccCCCEEEECccccceec
Confidence 4467778776568999999999986643
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=86.89 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=114.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCC--Cchhhhhhhhhc-CCCCccEEEEccCCCHHHHHHH
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRG--NMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKI 119 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~ 119 (393)
+||.|+|++|.||++++..|+..|. ++..++..... .......+.... ....++.+. . ...+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~------~~~~~ 75 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D------DPNVA 75 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c------CcHHH
Confidence 6999999999999999999998875 78888874322 222222232221 111122222 1 11344
Q ss_pred HhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-c-EEEEeecce---eecCCCCCCCCCCCC-C
Q 016208 120 FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-K-TLIYSSTCA---TYGEPDKMPITESTP-Q 193 (393)
Q Consensus 120 ~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~-~~V~~SS~~---vyg~~~~~~~~E~~~-~ 193 (393)
+ .++|+||.+||...- ...+....+..|+.-.+.+.+...+.+. . .+|.+|-.. +| ..-+..+ .
T Consensus 76 ~--~daDivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~------~~~k~sg~~ 145 (322)
T cd01338 76 F--KDADWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNAL------IAMKNAPDI 145 (322)
T ss_pred h--CCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHH------HHHHHcCCC
Confidence 5 799999999997533 2345677899999999999999988762 4 344444200 00 0112222 5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
.+...||.+++..+++...+++..+++...+|...|||++
T Consensus 146 p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 146 PPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred ChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 5677899999999999999999999999999988899986
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-07 Score=83.94 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=74.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||+||||. |+.|++.|.+.|++|++..+......... ..+...+..+..+.+++.+++.+.++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~---------~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP---------IHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc---------ccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 68999999999 99999999999999999877553322111 122334556667888899999888999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
+++..+. ...+.++.++|++.+++.+=|
T Consensus 71 DAtHPfA---------------~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 71 DATHPFA---------------AQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred EcCCHHH---------------HHHHHHHHHHHHHhCCcEEEE
Confidence 9986431 345789999999999864443
|
This enzyme was found to be a monomer by gel filtration. |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-06 Score=69.87 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=134.0
Q ss_pred CCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+++|++||+|-.. -|+..+++.|.+.|.++..+.... ...+.++++...-+...++++|+.+.+++.++++.
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e----~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE----RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH----HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH
Confidence 4679999999654 588999999999999998876544 23333333333224456799999999998888766
Q ss_pred ---CCCcEEEEcccccCccCCccC--------hHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGESTLE--------PLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~~~~~--------~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.+.|.++|+.+..+-.....+ .....++-..+...+..+++.. +-.-+|-++ .+|...
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt---Ylgs~r------ 150 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT---YLGSER------ 150 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE---ecccee------
Confidence 579999999997653221111 1222233333344455555433 112344333 122211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccc-cchHHHHHHHhCCCC
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHG-RISGACFDAARGIIP 265 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 265 (393)
....+|..|..|+..|..++.++... |+++..+--|.|=- +...| .-+..++......-|
T Consensus 151 --~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrT--------------LAasgI~~f~~~l~~~e~~aP 214 (259)
T COG0623 151 --VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRT--------------LAASGIGDFRKMLKENEANAP 214 (259)
T ss_pred --ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHH--------------HHhhccccHHHHHHHHHhhCC
Confidence 12237899999999999999988774 45655555433210 00000 122333344333322
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCC-CcceEEecCCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG-KVGIYNVGTGK 316 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~~yni~~~~ 316 (393)
.+.-+..+||....++++.+-..+ .|++.++.+|-
T Consensus 215 ----------------l~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~ 250 (259)
T COG0623 215 ----------------LRRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGY 250 (259)
T ss_pred ----------------ccCCCCHHHhhhhHHHHhcchhcccccceEEEcCCc
Confidence 233567899999988888753332 34677776654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=86.07 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=78.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-------CeEEEEeCCCCC--CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-------YRVTIVDNLSRG--NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
.+|+||||+|+||++++..|+..+ .+|+++++.... .......+.+ .......|+....++.+.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d------~~~~~~~~~~~~~~~~~~l 76 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD------CAFPLLKSVVATTDPEEAF 76 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh------ccccccCCceecCCHHHHh
Confidence 689999999999999999998844 589999885421 1111000100 0001223544455666777
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEeec
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSST 175 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~SS 175 (393)
.++|+|||+||.... ...+....++.|+.-...+.+...++. .. .+|.+|.
T Consensus 77 --~~aDiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 77 --KDVDVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred --CCCCEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 799999999997643 234568899999999999998888773 23 3444553
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-06 Score=79.23 Aligned_cols=88 Identities=17% Similarity=0.017 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCChhHHH--HHHHHHHCCCeEEEEeCCCCCCch--------hhhhhh-hhcCCCCccEEEEccCCCHHH
Q 016208 47 PGVTHVLVTGGAGYIGSH--AALRLLKDSYRVTIVDNLSRGNMG--------AVKVLQ-ELFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~Dl~~~~~ 115 (393)
..+|++||||+++.+|.+ +++.| ..|..|+++++....... ..+.+. .+......+..+.+|+++.++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 445899999999999999 89999 999998888753211110 001111 111112346678999999988
Q ss_pred HHHHHhh-----CCCcEEEEccccc
Q 016208 116 VNKIFAE-----NAFDAVMHFAAVA 135 (393)
Q Consensus 116 ~~~~~~~-----~~~d~Vi~~A~~~ 135 (393)
+.++++. .++|+|||++|..
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 8777654 4699999999965
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.5e-07 Score=80.05 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=48.3
Q ss_pred cCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC--HHHHHHHHhhCCCcEEEEccc
Q 016208 56 GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD--AKAVNKIFAENAFDAVMHFAA 133 (393)
Q Consensus 56 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~d~Vi~~A~ 133 (393)
.+|||+|.+|+++|+++|++|++++|...... . ...+++++.++..+ .+.+.+.+ .++|+|||+||
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~--------~--~~~~v~~i~v~s~~~m~~~l~~~~--~~~DivIh~AA 90 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP--------E--PHPNLSIIEIENVDDLLETLEPLV--KDHDVLIHSMA 90 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEEEEECcccccC--------C--CCCCeEEEEEecHHHHHHHHHHHh--cCCCEEEeCCc
Confidence 56899999999999999999999986432110 0 01356666644322 23455555 57999999999
Q ss_pred ccCc
Q 016208 134 VAYV 137 (393)
Q Consensus 134 ~~~~ 137 (393)
+.++
T Consensus 91 vsd~ 94 (229)
T PRK06732 91 VSDY 94 (229)
T ss_pred cCCc
Confidence 8753
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-06 Score=79.10 Aligned_cols=115 Identities=21% Similarity=0.133 Sum_probs=79.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHH---CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|||+|+||||.+|++++..|.. .++++.++++... .....-.+... .....+.+ .+.+++.+.+ .++|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~----~~~~~i~~--~~~~d~~~~l--~~~D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHI----PTAVKIKG--FSGEDPTPAL--EGAD 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcC----CCCceEEE--eCCCCHHHHc--CCCC
Confidence 6899999999999999998854 3568888887532 21111111110 11122333 1223334556 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+||.++|....+ .......+..|+.....+++.+.+.+.+++|.+.|
T Consensus 72 iVIitaG~~~~~--~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 72 VVLISAGVARKP--GMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 999999975432 34567889999999999999999999889998888
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=84.84 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=67.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCC-C-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 52 VLVTGGAGYIGSHAALRLLKDS-Y-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|+|| |++|+.+++.|.+++ + +|++.+|+........+ ++ ...++.++..|+.|.+++.+++ .++|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~---~~--~~~~~~~~~~d~~~~~~l~~~~--~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE---KL--LGDRVEAVQVDVNDPESLAELL--RGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHH--TTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh---hc--cccceeEEEEecCCHHHHHHHH--hcCCEEE
Confidence 799999 999999999999986 4 89998885433222221 11 2468999999999999999999 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
||++... ...++++|.+.|+ ++|=+
T Consensus 73 n~~gp~~------------------~~~v~~~~i~~g~-~yvD~ 97 (386)
T PF03435_consen 73 NCAGPFF------------------GEPVARACIEAGV-HYVDT 97 (386)
T ss_dssp E-SSGGG------------------HHHHHHHHHHHT--EEEES
T ss_pred ECCccch------------------hHHHHHHHHHhCC-Ceecc
Confidence 9998641 3367888888887 56663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=80.93 Aligned_cols=78 Identities=23% Similarity=0.188 Sum_probs=61.0
Q ss_pred CCCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC
Q 016208 47 PGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 47 ~~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
..+++|+|||| ||.+|.+++++|..+|++|+++++... .. ...+ ....|+
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-----------~~~~--~~~~dv 251 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-----------TPAG--VKRIDV 251 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-----------CCCC--cEEEcc
Confidence 45689999999 999999999999999999999876431 10 0112 345799
Q ss_pred CCHHHHHHHHhh--CCCcEEEEcccccCcc
Q 016208 111 GDAKAVNKIFAE--NAFDAVMHFAAVAYVG 138 (393)
Q Consensus 111 ~~~~~~~~~~~~--~~~d~Vi~~A~~~~~~ 138 (393)
.+.+++.+++.+ .++|++||+||+.++.
T Consensus 252 ~~~~~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 252 ESAQEMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred CCHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence 999888877754 4699999999987654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=73.55 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=60.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++++|+||+|.+|+.+++.|.+.|++|++++|.........+.+.+ ..+.....+|..+.+++.+++ .++|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~--~~~di 100 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRA----RFGEGVGAVETSDDAARAAAI--KGADV 100 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh----hcCCcEEEeeCCCHHHHHHHH--hcCCE
Confidence 347999999999999999999999999999988753222211221211 124556677888999999988 78999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||++...
T Consensus 101 Vi~at~~ 107 (194)
T cd01078 101 VFAAGAA 107 (194)
T ss_pred EEECCCC
Confidence 9987654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.3e-06 Score=75.64 Aligned_cols=86 Identities=8% Similarity=0.152 Sum_probs=62.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHH----CCCeEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEEccCCCHHHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLK----DSYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
--++|.|||||-|..+++++.+ .|...-+..|+..+..+..+.+.+.... -....++.+|..|++++.+.. .+
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema--k~ 83 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA--KQ 83 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH--hh
Confidence 3689999999999999999999 5777777666444333333333222111 123348889999999999999 78
Q ss_pred CcEEEEcccccCc
Q 016208 125 FDAVMHFAAVAYV 137 (393)
Q Consensus 125 ~d~Vi~~A~~~~~ 137 (393)
+.+|+||+|+..+
T Consensus 84 ~~vivN~vGPyR~ 96 (423)
T KOG2733|consen 84 ARVIVNCVGPYRF 96 (423)
T ss_pred hEEEEecccccee
Confidence 9999999997643
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=64.72 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=78.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCC-CccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQP-GQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|||.|+|++|.+|++++..|...+ .|+..+++...........+....... .......++ .+.+ .++|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~--~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-------YEAL--KDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-------GGGG--TTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-------cccc--cccc
Confidence 689999999999999999999886 589999885443333333333332111 223333333 2334 7899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+||-+||.... ........++.|+.-.+.+.+...+.+.+ .+|.+|
T Consensus 72 ivvitag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 72 IVVITAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EEEETTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEEEecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 99999997532 23457778899999999999999988643 344443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.8e-05 Score=71.14 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=94.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCC--CCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHHHH
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLS--RGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
||+|+||+|.||++++..|...|. ++..+++.. .........+.+.. ....... +. ....+.+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-----i~--~~~~~~~ 74 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-----IT--TDPEEAF 74 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-----Ee--cChHHHh
Confidence 799999999999999999987652 588888754 22222221222111 0001111 11 2345667
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcE-EEEeecceeecCCCCCCCCCCCCC-CCCC
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKT-LIYSSTCATYGEPDKMPITESTPQ-KPIN 197 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~-~V~~SS~~vyg~~~~~~~~E~~~~-~p~~ 197 (393)
.++|+|||+||.... ........+..|+.-.+.+.....+. +..- +|.+|- =+--. ....-+.... .+..
T Consensus 75 --~~aDiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN-PvD~~--t~~~~k~sg~~p~~~ 147 (323)
T cd00704 75 --KDVDVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN-PANTN--ALIALKNAPNLPPKN 147 (323)
T ss_pred --CCCCEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC-cHHHH--HHHHHHHcCCCCHHH
Confidence 799999999997533 23466778999999999999999888 3443 444432 00000 0000011111 2222
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
..+.+.+..-++-...++..+++...+.-..|+|..
T Consensus 148 vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 183 (323)
T cd00704 148 FTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNH 183 (323)
T ss_pred EEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecc
Confidence 223344444444444555566666666545667764
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=70.67 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=47.4
Q ss_pred cCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CCCcEEEE
Q 016208 56 GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NAFDAVMH 130 (393)
Q Consensus 56 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~d~Vi~ 130 (393)
.+||.||.+++++|.++|++|+++++... +.. . ....+|+.+.+++.++++. .++|++||
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~-----~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVn 86 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKP-----E--PHPNLSIREIETTKDLLITLKELVQEHDILIH 86 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEcChhh--------ccc-----c--cCCcceeecHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45899999999999999999999865211 000 0 0123688887776655432 46899999
Q ss_pred cccccCc
Q 016208 131 FAAVAYV 137 (393)
Q Consensus 131 ~A~~~~~ 137 (393)
+||+..+
T Consensus 87 nAgv~d~ 93 (227)
T TIGR02114 87 SMAVSDY 93 (227)
T ss_pred CCEeccc
Confidence 9997654
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.3e-05 Score=69.58 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=71.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH---------
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK--------- 114 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~--------- 114 (393)
||.|+|++|.||++++..|...|. ++..+++..... ...-...|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------------~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------------VLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------------ccceeEeehhcccchhcCceec
Confidence 589999999999999999987543 588888743321 0111112222222
Q ss_pred --HHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcE-EEEee
Q 016208 115 --AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKT-LIYSS 174 (393)
Q Consensus 115 --~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~-~V~~S 174 (393)
...+.+ .++|+|||+||.... ...+....+..|+.-.+.+.+...+.. ..- +|.+|
T Consensus 66 ~~~~~~~~--~~aDiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 66 THDPAVAF--TDVDVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred cCChHHHh--CCCCEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 224556 799999999997532 233467889999999999999998873 434 44444
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.6e-05 Score=74.60 Aligned_cols=106 Identities=21% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC
Q 016208 47 PGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 47 ~~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
..+++|+|||| ||.+|.+++++|..+|++|+.+.+...... +..+ ...|+
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~------------~~~~--~~~~v 248 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT------------PPGV--KSIKV 248 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC------------CCCc--EEEEe
Confidence 55689999998 478999999999999999999876432110 1222 45788
Q ss_pred CCHHHH-HHHHhh--CCCcEEEEcccccCccCCccC----h--HHHHHHHHHHHHHHHHHHHhcC
Q 016208 111 GDAKAV-NKIFAE--NAFDAVMHFAAVAYVGESTLE----P--LRYYHNITSNTLVILEAMAAHK 166 (393)
Q Consensus 111 ~~~~~~-~~~~~~--~~~d~Vi~~A~~~~~~~~~~~----~--~~~~~~n~~~~~~ll~~~~~~~ 166 (393)
.+.+++ .++++. .++|++|++||+.++...... . ...+..++..+..++...++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 249 STAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred ccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 888887 444422 368999999999866432111 0 1123466777778888877653
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.5e-05 Score=71.77 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~ 124 (393)
..+|||.|.||||++|..|++.|.++ +.+|..+.+...... . +.. .......+|+.+.+++... + .+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~-~---i~~-----~~~~l~~~~~~~~~~~~~~~~--~~ 104 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQ-S---FGS-----VFPHLITQDLPNLVAVKDADF--SD 104 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCC-C---chh-----hCccccCccccceecCCHHHh--cC
Confidence 46679999999999999999999999 679998876322211 1 111 0111222344333333332 4 57
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
+|+||.+.+.. ....++..+ +.++ ++|-.|+..-+.+
T Consensus 105 ~DvVf~Alp~~------------------~s~~i~~~~-~~g~-~VIDlSs~fRl~~ 141 (381)
T PLN02968 105 VDAVFCCLPHG------------------TTQEIIKAL-PKDL-KIVDLSADFRLRD 141 (381)
T ss_pred CCEEEEcCCHH------------------HHHHHHHHH-hCCC-EEEEcCchhccCC
Confidence 99999876421 345666665 3454 8999999877644
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.4e-05 Score=69.44 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|| |.+|++++..|.+.|.. |++++|.....+...+..+++......+.+...|+.+.+++.+.+ ..+|
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~~~D 201 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEI--ASSD 201 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhh--ccCC
Confidence 4478999998 89999999999999985 999988542112222222223222234556678888888888877 6789
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+..+.
T Consensus 202 ilINaTp~G 210 (289)
T PRK12548 202 ILVNATLVG 210 (289)
T ss_pred EEEEeCCCC
Confidence 999988654
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.6e-05 Score=71.91 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-C-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-S-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
...++|+||||+|+||+.++++|.++ | .+++++.|...... ....++ ..+++. ++.+++ .+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~---~La~el---------~~~~i~---~l~~~l--~~ 215 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ---ELQAEL---------GGGKIL---SLEEAL--PE 215 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH---HHHHHh---------ccccHH---hHHHHH--cc
Confidence 45589999999999999999999865 5 58888876432211 111111 113332 456777 68
Q ss_pred CcEEEEcccccC
Q 016208 125 FDAVMHFAAVAY 136 (393)
Q Consensus 125 ~d~Vi~~A~~~~ 136 (393)
+|+|||+++...
T Consensus 216 aDiVv~~ts~~~ 227 (340)
T PRK14982 216 ADIVVWVASMPK 227 (340)
T ss_pred CCEEEECCcCCc
Confidence 999999998753
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00064 Score=63.51 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=78.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..+||.|+|+ |.+|++++..|...|. ++..+++...........+.+......++....+| . +.+ .++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~---~----~~~--~~a 74 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD---Y----SDC--KDA 74 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC---H----HHh--CCC
Confidence 3479999997 9999999999999986 89999885554444444444433221233333222 2 335 799
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
|+||.+||...- ........+..|..-.+.+++.+.+.+.+-+|.
T Consensus 75 divIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vi 119 (315)
T PRK00066 75 DLVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFL 119 (315)
T ss_pred CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 999999997532 234567789999999999999998876543443
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-05 Score=69.61 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=55.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
..++|-|||||.|.-++++|..+|.......|+..+..... ..+ +.++-..++-+++.+.+.+ .+.+||+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~---~~L-----G~~~~~~p~~~p~~~~~~~--~~~~VVl 76 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALR---ASL-----GPEAAVFPLGVPAALEAMA--SRTQVVL 76 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHH---Hhc-----CccccccCCCCHHHHHHHH--hcceEEE
Confidence 57999999999999999999999988866555433222221 222 2223333444588888888 8999999
Q ss_pred EcccccC
Q 016208 130 HFAAVAY 136 (393)
Q Consensus 130 ~~A~~~~ 136 (393)
||+|+..
T Consensus 77 ncvGPyt 83 (382)
T COG3268 77 NCVGPYT 83 (382)
T ss_pred ecccccc
Confidence 9999763
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.9e-05 Score=63.38 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC
Q 016208 48 GVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111 (393)
Q Consensus 48 ~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 111 (393)
.+++||||+| ||-.|.+|++++..+|++|+.+.....-.. +.++..+.. .
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------------p~~~~~i~v--~ 67 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------------PPGVKVIRV--E 67 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE---S
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------------cccceEEEe--c
Confidence 3478888865 899999999999999999999976532110 245655554 4
Q ss_pred CHHHHHHHHhh--CCCcEEEEcccccCccC
Q 016208 112 DAKAVNKIFAE--NAFDAVMHFAAVAYVGE 139 (393)
Q Consensus 112 ~~~~~~~~~~~--~~~d~Vi~~A~~~~~~~ 139 (393)
..+++.+.+.+ ..+|++||+|++.++..
T Consensus 68 sa~em~~~~~~~~~~~Di~I~aAAVsDf~p 97 (185)
T PF04127_consen 68 SAEEMLEAVKELLPSADIIIMAAAVSDFRP 97 (185)
T ss_dssp SHHHHHHHHHHHGGGGSEEEE-SB--SEEE
T ss_pred chhhhhhhhccccCcceeEEEecchhheee
Confidence 55555544433 46799999999987653
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00059 Score=54.26 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCC-CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSR-GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||.|+||||++|+.|++.|.++- .++..+..... .........+... ....+.+.. .+.+ .+ .++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~---~~~~----~~--~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPK-GFEDLSVED---ADPE----EL--SDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGT-TTEEEBEEE---TSGH----HH--TTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccc-cccceeEee---cchh----Hh--hcCCEE
Confidence 79999999999999999999974 46555443333 2222222222110 001222222 2332 23 689999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~ 176 (393)
|.|.+. .....+...+.+.|+ ++|=.|+.
T Consensus 71 f~a~~~------------------~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 71 FLALPH------------------GASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp EE-SCH------------------HHHHHHHHHHHHTTS-EEEESSST
T ss_pred EecCch------------------hHHHHHHHHHhhCCc-EEEeCCHH
Confidence 988752 124456666677787 67777773
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=66.11 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=100.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|+|++|.+|++++..|...| .++..++.. ......-.+.... ....+.... ..+++.+.+ .++|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~---~~~~i~~~~--~~~~~y~~~--~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN---TPAKVTGYL--GPEELKKAL--KGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC---CcceEEEec--CCCchHHhc--CCCCE
Confidence 589999999999999999999887 489998875 2222222232221 112222110 112234556 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEeecce-------eecCCCCCCCCCCCCCCCCChH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSSTCA-------TYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~SS~~-------vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
||-+||...- ........++.|+.-...+.+...+.+.+- +|.+|-.. .|-- .+.....+....
T Consensus 72 vvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~------~~~s~~p~~rvi 143 (310)
T cd01337 72 VVIPAGVPRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVL------KKAGVYDPKRLF 143 (310)
T ss_pred EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHH------HHhcCCCHHHEE
Confidence 9999997532 234677899999999999999998886444 44444321 1100 001111222223
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
|..-.-.-++-...++..+++..-++ +.|+|.+
T Consensus 144 G~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 144 GVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred eeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 33323334444555666788777787 8888875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0012 Score=61.83 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=100.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCC--Cchhhhhhhhhc-CCCCccEEEEccCCCHHHHHH
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRG--NMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNK 118 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 118 (393)
..||.|+|++|++|++++..|...|. ++..++..... .......+.+.. ....+.... . ...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~------~~~~ 75 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-T------DPEE 75 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-c------ChHH
Confidence 37999999999999999999998874 78888874321 233333333321 111122211 1 1234
Q ss_pred HHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecceeecCCCCCCCC-------CC
Q 016208 119 IFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-KTLIYSSTCATYGEPDKMPIT-------ES 190 (393)
Q Consensus 119 ~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~V~~SS~~vyg~~~~~~~~-------E~ 190 (393)
.+ .++|+||.+||...- ...+....+..|+.-.+.+.+.+.+.+. .-+|.+-|. |.| +.
T Consensus 76 ~~--~daDvVVitAG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN---------PvDv~t~v~~k~ 142 (323)
T TIGR01759 76 AF--KDVDAALLVGAFPRK--PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN---------PANTNALIASKN 142 (323)
T ss_pred Hh--CCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC---------cHHHHHHHHHHH
Confidence 45 799999999997532 3456777999999999999999998864 444444441 111 11
Q ss_pred C-CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 191 T-PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 191 ~-~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
. -..+..-.|.+.+..-++-...++..+++...++-..|+|..
T Consensus 143 s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 186 (323)
T TIGR01759 143 APDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH 186 (323)
T ss_pred cCCCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecC
Confidence 1 111222233334444444444555677877777766677864
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=65.93 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=60.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCe---EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYR---VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|++|+|.||||++|+.|++.|.++||. +.++.+...... ... + .+......|+.+. .+ .++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~-~l~----~----~g~~i~v~d~~~~-----~~--~~v 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK-ELS----F----KGKELKVEDLTTF-----DF--SGV 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC-eee----e----CCceeEEeeCCHH-----HH--cCC
Confidence 579999999999999999999998874 466655322111 111 0 1234444565432 23 489
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT 178 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v 178 (393)
|+||.+++.. .+..+++...+.|+ ++|=.|+..-
T Consensus 65 DvVf~A~g~g------------------~s~~~~~~~~~~G~-~VIDlS~~~R 98 (334)
T PRK14874 65 DIALFSAGGS------------------VSKKYAPKAAAAGA-VVIDNSSAFR 98 (334)
T ss_pred CEEEECCChH------------------HHHHHHHHHHhCCC-EEEECCchhh
Confidence 9999887642 13345555556676 6776777543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00065 Score=64.06 Aligned_cols=110 Identities=24% Similarity=0.381 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC---------------------CCCchhhhhhhhhcCCCCccEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS---------------------RGNMGAVKVLQELFPQPGQLQF 105 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 105 (393)
...+|+|+|+ |.+|+++++.|...|. ++++++... ++.....+.++++.+ .-.++.
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp-~v~v~~ 100 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS-DVRVEA 100 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC-CcEEEE
Confidence 3479999995 9999999999999997 888887642 111112233333322 234556
Q ss_pred EEccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 106 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+..++. .+.+.+++ .++|+||.+... ...-..+-+.|.+.++ .+|+.++.+.||
T Consensus 101 ~~~~~~-~~~~~~~~--~~~DlVid~~Dn-----------------~~~r~~ln~~~~~~~i-P~i~~~~~g~~G 154 (339)
T PRK07688 101 IVQDVT-AEELEELV--TGVDLIIDATDN-----------------FETRFIVNDAAQKYGI-PWIYGACVGSYG 154 (339)
T ss_pred EeccCC-HHHHHHHH--cCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCC-CEEEEeeeeeee
Confidence 666764 45566777 789999988531 2223356688888887 588888777665
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=60.88 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=73.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCC--CCCchhhhhhhhh-cCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLS--RGNMGAVKVLQEL-FPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|+|.|+|+||.+|.+++..|+..|+ +|++++|.. .........+.+. ...+....+... .+. . .+ .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~--~d~---~-~l--~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKIS--SDL---S-DV--AG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEEC--CCH---H-Hh--CC
Confidence 6899999999999999999999986 599998843 1111111111111 011111222111 122 2 35 79
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeec
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSST 175 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS 175 (393)
+|+||-++|...- ........+..|+...+.+++.+.+.+.+ .+|.+++
T Consensus 73 aDiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 73 SDIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999999986432 22344678889999999999988777433 5555665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00024 Score=75.52 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCC-Ce-------------EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDS-YR-------------VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 111 (393)
...|++|+|+|+ |++|+..++.|.+.. .+ |.+.++.. ....+.... .+++..+..|+.
T Consensus 566 ~~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~---~~a~~la~~----~~~~~~v~lDv~ 637 (1042)
T PLN02819 566 TKKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL---KDAKETVEG----IENAEAVQLDVS 637 (1042)
T ss_pred cccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH---HHHHHHHHh----cCCCceEEeecC
Confidence 346789999995 999999999998753 33 66554432 222121111 136788999999
Q ss_pred CHHHHHHHHhhCCCcEEEEcccc
Q 016208 112 DAKAVNKIFAENAFDAVMHFAAV 134 (393)
Q Consensus 112 ~~~~~~~~~~~~~~d~Vi~~A~~ 134 (393)
|.+++.+++ .++|+||.+...
T Consensus 638 D~e~L~~~v--~~~DaVIsalP~ 658 (1042)
T PLN02819 638 DSESLLKYV--SQVDVVISLLPA 658 (1042)
T ss_pred CHHHHHHhh--cCCCEEEECCCc
Confidence 999999998 679999999864
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0017 Score=60.65 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=77.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCC-CccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQP-GQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
++|.|+| +|.+|+.++..|+..| ++|.++++...........+.+..... .......+ +.+ .+ .++|
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~---~~~----~l--~~aD 70 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG---DYS----DC--KDAD 70 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcC---CHH----Hh--CCCC
Confidence 4799999 5999999999999999 689999986555444444443332111 12222222 222 34 6999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~S 174 (393)
+||+++|...- ...+....++.|+.-.+.+.+.+.+.+.+- +|.+|
T Consensus 71 IVIitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 71 IVVITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 99999987532 234567789999999999999999886444 44444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00082 Score=63.34 Aligned_cols=110 Identities=20% Similarity=0.339 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCC---------------------CCchhhhhhhhhcCCCCccEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR---------------------GNMGAVKVLQELFPQPGQLQF 105 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 105 (393)
..++|+|+| .|.+|+++++.|...|. +++++++..- +...+.+.+.++.+ .-.++.
T Consensus 23 ~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp-~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS-EVEIVP 100 (338)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC-CcEEEE
Confidence 337899999 58899999999999997 7887876421 11112233444322 245566
Q ss_pred EEccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 106 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+..|+. .+.+.+++ .++|+||.+... ...-..+-+.|.+.+++ +|+.+..+.+|
T Consensus 101 ~~~~~~-~~~~~~~~--~~~DlVid~~D~-----------------~~~r~~in~~~~~~~ip-~i~~~~~g~~G 154 (338)
T PRK12475 101 VVTDVT-VEELEELV--KEVDLIIDATDN-----------------FDTRLLINDLSQKYNIP-WIYGGCVGSYG 154 (338)
T ss_pred EeccCC-HHHHHHHh--cCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCC-EEEEEecccEE
Confidence 777774 45677777 789999988631 11222355778888874 78877666554
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00089 Score=59.38 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=58.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~V 128 (393)
|+++|.| .|.+|+.+++.|.+.|++|+++++...... +.. ......+.+.+|.++++.+.++ + .++|++
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~---~~~----~~~~~~~~v~gd~t~~~~L~~agi--~~aD~v 70 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVE---EFL----ADELDTHVVIGDATDEDVLEEAGI--DDADAV 70 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHH---HHh----hhhcceEEEEecCCCHHHHHhcCC--CcCCEE
Confidence 6899999 699999999999999999999987432211 111 1125788999999999999988 5 789999
Q ss_pred EEccc
Q 016208 129 MHFAA 133 (393)
Q Consensus 129 i~~A~ 133 (393)
+=+.+
T Consensus 71 va~t~ 75 (225)
T COG0569 71 VAATG 75 (225)
T ss_pred EEeeC
Confidence 86654
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00041 Score=65.18 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=58.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEE---EEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVT---IVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
++|++|.|+||||++|+.|++.|.+++|.+. .+.. .+.... .+. + .+. ..++.+.+.. + + .
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s-~~~aG~---~l~-~----~~~---~l~~~~~~~~-~-~--~ 65 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS-SESAGH---SVP-F----AGK---NLRVREVDSF-D-F--S 65 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC-cccCCC---eec-c----CCc---ceEEeeCChH-H-h--c
Confidence 3558999999999999999999998876433 3322 221111 111 0 111 2233222221 1 4 5
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceee
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATY 179 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vy 179 (393)
++|+||.+++.. ....+++.+.+.|+ ++|=.|+..-+
T Consensus 66 ~vD~vFla~p~~------------------~s~~~v~~~~~~G~-~VIDlS~~fR~ 102 (336)
T PRK05671 66 QVQLAFFAAGAA------------------VSRSFAEKARAAGC-SVIDLSGALPS 102 (336)
T ss_pred CCCEEEEcCCHH------------------HHHHHHHHHHHCCC-eEEECchhhcC
Confidence 799999876421 12346777777787 68888887654
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0016 Score=58.34 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=74.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|++|||+|||+ =|+.|++.|.+.|++|++..-..... .....+..+.|-+.+.+++.+++.+.+++.|
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~-----------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGG-----------PADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCC-----------cccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 57899999985 69999999999999888754322111 0124678888998899999999999999999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
|+..-++. ..-+.++.++|++.+++.+=|
T Consensus 70 IDATHPfA---------------~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 70 IDATHPYA---------------AQISANAAAACRALGIPYLRL 98 (248)
T ss_pred EECCCccH---------------HHHHHHHHHHHHHhCCcEEEE
Confidence 99864321 345778999999999874444
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=59.61 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=98.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCC--Cchhhhhhhhhc-CCCCccEEEEccCCCHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRG--NMGAVKVLQELF-PQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~ 117 (393)
.++||.|+|++|.+|++++..|...|. ++..++..... .......+.+.. ....++.+..+ ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~-------~y 75 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDD-------PN 75 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecC-------hH
Confidence 457999999999999999999988753 78888874321 222222232221 11112222211 13
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEeecceeecCCCCCCCC-------
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSSTCATYGEPDKMPIT------- 188 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~SS~~vyg~~~~~~~~------- 188 (393)
+.+ .++|+||-+||...- ...+....+..|+.-.+.+.+...++. .. .+|.+|- |.|
T Consensus 76 ~~~--~daDiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN----------PvDv~t~v~~ 141 (326)
T PRK05442 76 VAF--KDADVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN----------PANTNALIAM 141 (326)
T ss_pred HHh--CCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC----------chHHHHHHHH
Confidence 445 799999999997432 245677789999999999999998843 23 4555553 111
Q ss_pred CCC-CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 189 EST-PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 189 E~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
+.. -..+....|.+-+..-++-...++..+++...++-..|+|..
T Consensus 142 k~s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH 187 (326)
T PRK05442 142 KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNH 187 (326)
T ss_pred HHcCCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECC
Confidence 111 111122233333344444444555677777777754567764
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00083 Score=53.65 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=55.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-CCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~-~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|.|++|.+|+.+++.+.+ .|+++.+. +|...... -+.+.++... . ...+.-.+++.+++ ..+|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~--g~d~g~~~~~----~--~~~~~v~~~l~~~~--~~~DV 70 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV--GKDVGELAGI----G--PLGVPVTDDLEELL--EEADV 70 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT--TSBCHHHCTS----S--T-SSBEBS-HHHHT--TH-SE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc--cchhhhhhCc----C--CcccccchhHHHhc--ccCCE
Confidence 6899999999999999999999 68887665 44331111 1111111100 0 01111124567777 44999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
||+... -..+...++.|.++++ .+|.-+|
T Consensus 71 vIDfT~------------------p~~~~~~~~~~~~~g~-~~ViGTT 99 (124)
T PF01113_consen 71 VIDFTN------------------PDAVYDNLEYALKHGV-PLVIGTT 99 (124)
T ss_dssp EEEES-------------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred EEEcCC------------------hHHhHHHHHHHHhCCC-CEEEECC
Confidence 998862 2245567888888887 4554333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00078 Score=66.51 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++|+|+|+++ +|..+++.|+++|++|+++++.... ...+.+.++.. .++.++.+|..+ +.. .++|+
T Consensus 4 ~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~--~~~~~~~~l~~--~~~~~~~~~~~~-----~~~--~~~d~ 71 (450)
T PRK14106 4 KGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED--QLKEALEELGE--LGIELVLGEYPE-----EFL--EGVDL 71 (450)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH--HHHHHHHHHHh--cCCEEEeCCcch-----hHh--hcCCE
Confidence 458999999777 9999999999999999998774321 12222222211 357788888765 223 57999
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
||+++++.
T Consensus 72 vv~~~g~~ 79 (450)
T PRK14106 72 VVVSPGVP 79 (450)
T ss_pred EEECCCCC
Confidence 99999864
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0038 Score=58.05 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=98.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCC--CccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQP--GQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||.|+|+ |.||+.++..|+.+|. ++..++............+....... ..+....+| .+.+ .++|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~--~~aD 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDC--ADAD 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHh--CCCC
Confidence 5899997 9999999999998874 89999875544444444444422211 134444444 2345 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCC-------CCCCCCCChH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITE-------STPQKPINPY 199 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E-------~~~~~p~~~Y 199 (393)
+||-+||...-+...++-...+..|+.-.+.+.+.+.+.+..-++.+-|- |.|- .+...+..-.
T Consensus 71 ivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN---------PvDv~t~~~~k~sg~p~~rvi 141 (307)
T cd05290 71 IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN---------PLDIAVYIAATEFDYPANKVI 141 (307)
T ss_pred EEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC---------cHHHHHHHHHHHhCcChhhee
Confidence 99999997532211111478899999999999999998875555554441 2110 0011111112
Q ss_pred HH-HHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 200 GK-AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 200 ~~-sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
|. +-+-.-++-...++..+++...++ +.|+|.+
T Consensus 142 G~gt~LDs~R~~~~la~~l~v~~~~V~-~~ViGeH 175 (307)
T cd05290 142 GTGTMLDTARLRRIVADKYGVDPKNVT-GYVLGEH 175 (307)
T ss_pred cccchHHHHHHHHHHHHHhCCCcccEE-EEEEecC
Confidence 22 222333333344555778888888 4588865
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0049 Score=57.48 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=74.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|+|.|.|+ |.+|..++..|+.+| .+|.++++...........+..............+ +. +.+ .++|+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~---d~----~~l--~~aDi 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG---DY----ADC--KGADV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC---CH----HHh--CCCCE
Confidence 58999996 999999999999999 68999988543333222222222111112222222 22 235 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
||.+++...- ...........|+...+.+.+.+.+.+.+-+|.+-|
T Consensus 71 Viita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 71 VVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999986432 234566778899999999999988876444444433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00094 Score=63.25 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=60.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEE-EccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d 126 (393)
|+||+|+||||++|+.+++.|.++ ++++.++.+.........+.. +.+... ..++.+.+.. .. .++|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~--~~--~~vD 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVH-------PHLRGLVDLVLEPLDPE--IL--AGAD 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhC-------cccccccCceeecCCHH--Hh--cCCC
Confidence 589999999999999999999987 678877665222111111111 111111 1122222222 33 5799
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+||-+.... ....++..+.+.|+ ++|=.|+..-+.
T Consensus 71 ~Vf~alP~~------------------~~~~~v~~a~~aG~-~VID~S~~fR~~ 105 (343)
T PRK00436 71 VVFLALPHG------------------VSMDLAPQLLEAGV-KVIDLSADFRLK 105 (343)
T ss_pred EEEECCCcH------------------HHHHHHHHHHhCCC-EEEECCcccCCC
Confidence 998766421 12355566666665 788888866653
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0024 Score=55.64 Aligned_cols=110 Identities=27% Similarity=0.278 Sum_probs=69.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCC-------------------CchhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NMGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.| .|.+|+++++.|...|. ++++++...-. .....+.+.++.+. -.++.+.
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-v~i~~~~ 97 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD-IQVTALK 97 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC-CEEEEeh
Confidence 347899999 79999999999999996 78888764211 11112223333211 2333444
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
..+ +.+.+.+.+ .++|+||.+... ...-..+-+.|++.++ .+|+.++.+.+|
T Consensus 98 ~~i-~~~~~~~~~--~~~D~Vi~~~d~-----------------~~~r~~l~~~~~~~~i-p~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERV-TAENLELLI--NNVDLVLDCTDN-----------------FATRYLINDACVALGT-PLISAAVVGFGG 149 (202)
T ss_pred hcC-CHHHHHHHH--hCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccCeE
Confidence 444 345667777 789999987632 1223346678888887 588877655554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0008 Score=56.56 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=61.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC----CCccEEEEccCCCHHHHHHHHhh--
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ----PGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
||+|.++| .|-+|+.+++.|++.|++|++.+|.........+.--..... -...+++..=+.+.+++.+++..
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~ 79 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN 79 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH
Confidence 79999999 799999999999999999999987532222111110000000 02346666667777777776643
Q ss_pred -----CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 123 -----NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
..-++||++.... -..++.+.+.+.+.|+ ++|-
T Consensus 80 i~~~l~~g~iiid~sT~~----------------p~~~~~~~~~~~~~g~-~~vd 117 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTIS----------------PETSRELAERLAAKGV-RYVD 117 (163)
T ss_dssp HGGGS-TTEEEEE-SS------------------HHHHHHHHHHHHHTTE-EEEE
T ss_pred HhhccccceEEEecCCcc----------------hhhhhhhhhhhhhccc-eeee
Confidence 2344666665432 2235567777777775 4553
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00037 Score=65.11 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=31.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+|+|.|+| .|.+|..++..|+++|++|++++|..
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 47899999 89999999999999999999998854
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0022 Score=62.19 Aligned_cols=172 Identities=9% Similarity=0.008 Sum_probs=101.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC---C--Ce--EEEEeCC--CCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHH
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD---S--YR--VTIVDNL--SRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNK 118 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~---g--~~--V~~~~r~--~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 118 (393)
.-+|+||||+|+||.+|+-.+.+= | .. +..++.. ........-.+++.. ....++.+...| .+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~-------~e 195 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDL-------DV 195 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECC-------HH
Confidence 368999999999999999999763 4 23 3444442 111122222222221 111233333222 35
Q ss_pred HHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCC-CCCC
Q 016208 119 IFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITEST-PQKP 195 (393)
Q Consensus 119 ~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~-~~~p 195 (393)
.+ .++|+||-+||...- ...+....++.|+.-...+.+...+... .+++.+.|.=+--.. ...-+.. -..+
T Consensus 196 a~--~daDvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t--~i~~k~apgiP~ 269 (452)
T cd05295 196 AF--KDAHVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKT--SILIKYAPSIPR 269 (452)
T ss_pred Hh--CCCCEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHH--HHHHHHcCCCCH
Confidence 56 799999999997532 2446777899999999999999988765 567766651110000 0000111 1223
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
.+..|.+....-++....+++.+++...++-..|.|..
T Consensus 270 ~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH 307 (452)
T cd05295 270 KNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNI 307 (452)
T ss_pred HHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc
Confidence 34455555555555555666788888888777888875
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0045 Score=60.03 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=101.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC-------CC--eEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD-------SY--RVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~ 117 (393)
..-+|.|+|++|.||.+++..|... |. ++..+++.........-.+.+.. .....+.+..+| .
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-------y 171 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-------Y 171 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-------H
Confidence 3469999999999999999999988 54 78888776555554444444432 111122222222 2
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHh-cCCc-EEEEeecce---eecCCCCCCCCCCCC
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA-HKVK-TLIYSSTCA---TYGEPDKMPITESTP 192 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~~-~~V~~SS~~---vyg~~~~~~~~E~~~ 192 (393)
+.+ .++|+||-+||...- ...+..+.++.|+.-.+.+.+...+ ++.. .+|.+|-.. +|- .-+..+
T Consensus 172 e~~--kdaDiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v------~~k~sg 241 (444)
T PLN00112 172 EVF--QDAEWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALI------CLKNAP 241 (444)
T ss_pred HHh--CcCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHH------HHHHcC
Confidence 345 799999999997532 2456778999999999999999988 5543 444444310 000 001111
Q ss_pred CCC-CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 193 QKP-INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 193 ~~p-~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
..| ...=..+.+..-++-...+++.+++...++-..|+|..
T Consensus 242 ~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH 283 (444)
T PLN00112 242 NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 283 (444)
T ss_pred CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecC
Confidence 111 11112222333333344455577887777767788875
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0038 Score=50.65 Aligned_cols=108 Identities=24% Similarity=0.380 Sum_probs=70.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
++|+|.| .|.+|+.+++.|...|. ++++++...-.. ....+.+.++.+ ...+..+..+
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np-~~~v~~~~~~ 80 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP-DVEVEAIPEK 80 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST-TSEEEEEESH
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC-ceeeeeeecc
Confidence 6899999 69999999999999997 677776521100 012222333322 1355666667
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+ +.+...+.+ .++|+||.+... ...-..+-+.|++.++ .+|+.++.+.+|
T Consensus 81 ~-~~~~~~~~~--~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELL--KDYDIVIDCVDS-----------------LAARLLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHH--HTSSEEEEESSS-----------------HHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred c-ccccccccc--cCCCEEEEecCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 6 556677777 689999988642 2233457778888887 688877755544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=69.56 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=110.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeE-EEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~ 123 (393)
-+..+|+||-|..|-.|++.|.++|.+- +.++|+.-+.--....++......-++.+-.-|++..+....+++. .
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 3789999999999999999999999754 4455654443333344444333334455556788877666666543 3
Q ss_pred CCcEEEEcccccCccCCccChHHHHH----HHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYH----NITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~----~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
.+-.|||+|++......+....+.|+ .-..+|.+|=...++. -.+.||.+||..+=-+.- ..+
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~-----------GQt 1916 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNA-----------GQT 1916 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCC-----------ccc
Confidence 46789999987643333333333333 3345666665555544 256899999865432222 367
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccc
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v 229 (393)
-||.+-.++|+++..-. ..|++.+.+--|.|
T Consensus 1917 NYG~aNS~MERiceqRr-~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1917 NYGLANSAMERICEQRR-HEGFPGTAIQWGAI 1947 (2376)
T ss_pred ccchhhHHHHHHHHHhh-hcCCCcceeeeecc
Confidence 89999999999998743 36777777765544
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0017 Score=61.65 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL 82 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~ 82 (393)
.|+||+|+||||++|+.|++.|..+.. ++.++.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 358999999999999999999998754 88887443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.006 Score=56.21 Aligned_cols=166 Identities=19% Similarity=0.114 Sum_probs=97.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+||.|+|+ |+||+.++-.|+.++ .++..+++...........+.+.......-..+.+| .+ .+.+ .+.|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~--~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDL--KGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhh--cCCCE
Confidence 58999998 999999999997774 489999886443433333333221111111223333 12 2335 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee----ecCCCCCCCCCCCCCC-CCChHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT----YGEPDKMPITESTPQK-PINPYGKA 202 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v----yg~~~~~~~~E~~~~~-p~~~Y~~s 202 (393)
|+-.||...- .-......++.|..-...+.+...+.+.+-++.+-|.=| |- .-+.+... ..-.-+.+
T Consensus 73 VvitAG~prK--pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~------~~k~sg~p~~rvig~gt 144 (313)
T COG0039 73 VVITAGVPRK--PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYI------AMKFSGFPKNRVIGSGT 144 (313)
T ss_pred EEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHH------HHHhcCCCccceecccc
Confidence 9999987532 234667789999999999999998887555555544111 10 00111110 11122223
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCC
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGS 232 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~ 232 (393)
.+-.-++-...++..+++...++ +.|.|.
T Consensus 145 ~LDsaR~~~~lae~~~v~~~~V~-~~ViGe 173 (313)
T COG0039 145 VLDSARFRTFLAEKLGVSPKDVH-AYVIGE 173 (313)
T ss_pred hHHHHHHHHHHHHHhCCChhHce-eeEecc
Confidence 33444444445556778777787 666664
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0044 Score=53.81 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=69.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCc---------------------hhhhhhhhhcCCCCccEEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNM---------------------GAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 107 (393)
.+|+|.|+.| +|.++++.|...|. ++++++...-... ...+.++++.+. -+++.+.
T Consensus 20 s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~-v~i~~~~ 97 (198)
T cd01485 20 AKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPN-VKLSIVE 97 (198)
T ss_pred CcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCC-CEEEEEe
Confidence 6899999655 99999999999995 5777765311100 011223333222 3445555
Q ss_pred ccCCC-HHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 108 ADLGD-AKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 108 ~Dl~~-~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
.++.+ .+...+.+ .++|+||.+... ......+-+.|++.++ .+|+.++.+.||.
T Consensus 98 ~~~~~~~~~~~~~~--~~~dvVi~~~d~-----------------~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 152 (198)
T cd01485 98 EDSLSNDSNIEEYL--QKFTLVIATEEN-----------------YERTAKVNDVCRKHHI-PFISCATYGLIGY 152 (198)
T ss_pred cccccchhhHHHHH--hCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence 55542 34456667 689999966421 2223346688999888 5899888777765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0024 Score=57.33 Aligned_cols=99 Identities=26% Similarity=0.333 Sum_probs=71.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||+|||+ =|+.|++.|.+.|+ |++..-.+-... . .......+.++.|-+.+.+.+.+++.+.+++.||
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~~----~---~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vI 71 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGGE----L---LKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVI 71 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhHh----h---hccccCCceEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 7999999985 69999999999998 554322111111 0 0011246788888888999999999999999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
+..-++. ..-+.++.++|++.|++.+-|
T Consensus 72 DATHPfA---------------~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 72 DATHPFA---------------AEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ECCCchH---------------HHHHHHHHHHHhhcCcceEEE
Confidence 9864321 345789999999999864443
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0023 Score=59.77 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=71.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||||.|+|+ |.+|..++..|...|. +|+++++...........+.+.... .....+.. . .+. +.+ .++|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~-~d~----~~~--~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-T-NDY----EDI--AGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-C-CCH----HHH--CCCC
Confidence 689999997 9999999999998875 9999988443322221112221111 01122211 0 122 235 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+||.+++...- ......+.+..|+.-...+++.+.+...+ .+|.+|
T Consensus 73 iVii~~~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 73 VVVITAGVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999986432 23345567778888888888888777544 355544
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0052 Score=57.32 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=76.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEE-ccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY-ADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~d 126 (393)
+||.|+|+ |.||+.++..|+..|. ++..++............+...........+.. +| ++ .+ .++|
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~d---y~----~~--~~ad 73 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKD---YS----VT--ANSK 73 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCC---HH----Hh--CCCC
Confidence 59999995 9999999999988864 888888755444444444444321111123332 33 32 25 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+||-+||...- ........+..|+.-.+.+.+.+.+.+.+ .+|.+|
T Consensus 74 ivvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 74 VVIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred EEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 99999997532 23456778899999999999999888644 344444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=58.26 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=56.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
||||.|+|++|.+|+.+++.+.+. +.++.++......... .. -..++...+++.+++ .++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~--~~-------------~~~~i~~~~dl~~ll--~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV--GQ-------------GALGVAITDDLEAVL--ADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--cc-------------CCCCccccCCHHHhc--cCCCE
Confidence 579999999999999999998864 6788775432221110 00 112333344556666 47999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V 171 (393)
||+++... ....++..|.++|+ .+|
T Consensus 64 Vid~t~p~------------------~~~~~~~~al~~G~-~vv 88 (257)
T PRK00048 64 LIDFTTPE------------------ATLENLEFALEHGK-PLV 88 (257)
T ss_pred EEECCCHH------------------HHHHHHHHHHHcCC-CEE
Confidence 99987321 13456777888887 455
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0043 Score=57.71 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=75.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||.|+|++|.||++++..|...+. ++..+++.. .......+.... ....+.... +.+++.+.+ .++|+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~---~~~~i~~~~--~~~~~~~~~--~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP---TAASVKGFS--GEEGLENAL--KGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC---cCceEEEec--CCCchHHHc--CCCCEE
Confidence 589999999999999999988874 888888754 222222222211 112222101 111234556 799999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|-+||.... ........+..|+.-.+.+.+...+.+.+-+|.+-|
T Consensus 72 vitaG~~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 72 VIPAGVPRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred EEeCCCCCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999997532 245677789999999999999998886544444333
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.012 Score=55.57 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=76.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEE-ccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY-ADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~d 126 (393)
+||.|+|+ |.||++++..|+..|. ++..++............+...........+.. +| + +.+ .++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d---y----~~~--~daD 107 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD---Y----AVT--AGSD 107 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC---H----HHh--CCCC
Confidence 69999995 9999999999998874 789988755444444444444322112233322 23 2 225 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~S 174 (393)
+||-+||...- ...+....+..|+.-.+.+.+...+.+.+- +|.+|
T Consensus 108 iVVitAG~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 108 LCIVTAGARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999997532 234566788899999999999998876443 44444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=63.89 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=57.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~V 128 (393)
|+|+|+|+ |.+|+++++.|.+.|++|+++++.... .+.+.+ ..++.++.||..+.+.+.++ + .++|.|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~----~~~~~~----~~~~~~~~gd~~~~~~l~~~~~--~~a~~v 69 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEER----LRRLQD----RLDVRTVVGNGSSPDVLREAGA--EDADLL 69 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHH----HHHHHh----hcCEEEEEeCCCCHHHHHHcCC--CcCCEE
Confidence 58999996 999999999999999999999774322 112211 13688999999999988887 5 689998
Q ss_pred EEccc
Q 016208 129 MHFAA 133 (393)
Q Consensus 129 i~~A~ 133 (393)
|-+..
T Consensus 70 i~~~~ 74 (453)
T PRK09496 70 IAVTD 74 (453)
T ss_pred EEecC
Confidence 87653
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=61.92 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=59.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|+|.|+||||++|..+++.|.++ +.++..+ ++.........+....+ .... ..++.+. +..++. .++|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l----~~~~--~~~~~~~-~~~~~~--~~~Dv 71 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHL----RGLV--DLNLEPI-DEEEIA--EDADV 71 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccc----cccC--CceeecC-CHHHhh--cCCCE
Confidence 58999999999999999999987 5688754 33221111111111111 0100 0111111 123333 47999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
||.+.... ....++..+.+.|+ ++|=.|+..-+.
T Consensus 72 Vf~alP~~------------------~s~~~~~~~~~~G~-~VIDlS~~fR~~ 105 (346)
T TIGR01850 72 VFLALPHG------------------VSAELAPELLAAGV-KVIDLSADFRLK 105 (346)
T ss_pred EEECCCch------------------HHHHHHHHHHhCCC-EEEeCChhhhcC
Confidence 99877421 23456666666775 899899876654
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0032 Score=57.39 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=75.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCC----CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 52 VLVTGGAGYIGSHAALRLLKDS----YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|.|+||+|.+|..++..|+..| .+|..+++...........+++........++.. ..++.+.+ .++|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-----~~d~~~~~--~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-----TDDPYEAF--KDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-----CCchHHHh--CCCCE
Confidence 5799999999999999999998 7999998865444444444444322210112221 12235556 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V 171 (393)
||.+++..... ..........|+...+.+.+.+.+....-++
T Consensus 74 Vv~t~~~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~ 115 (263)
T cd00650 74 VIITAGVGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWI 115 (263)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999875432 2345567788999999999999887644333
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0062 Score=54.20 Aligned_cols=109 Identities=24% Similarity=0.306 Sum_probs=68.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC-------C------------CCchhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------R------------GNMGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~------------~~~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|.| .|.+|+++++.|...|. ++++++... + +.+...+.+.++.+. -.++.+..
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~i~~~~~ 98 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-VEIEAYNE 98 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC-CEEEEecc
Confidence 37999999 79999999999999996 666664321 0 111122223333211 24555555
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
++ +.+.+.+++ .++|+||.+.... ..-..+-+.|.+.++ .+|+.+..+.+|
T Consensus 99 ~i-~~~~~~~~~--~~~DvVi~~~d~~-----------------~~r~~l~~~~~~~~i-p~i~~g~~g~~g 149 (228)
T cd00757 99 RL-DAENAEELI--AGYDLVLDCTDNF-----------------ATRYLINDACVKLGK-PLVSGAVLGFEG 149 (228)
T ss_pred ee-CHHHHHHHH--hCCCEEEEcCCCH-----------------HHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 55 345667777 6899999886421 122356678888887 588877655444
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0028 Score=59.82 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=57.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEE---EeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTI---VDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+|+|.||||++|+.|++.|.+++|.+.. +.+... ...... + .+......|+. ...+ .++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~-~g~~~~----~----~~~~~~~~~~~-----~~~~--~~~D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRS-AGRKVT----F----KGKELEVNEAK-----IESF--EGIDI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecccc-CCCeee----e----CCeeEEEEeCC-----hHHh--cCCCE
Confidence 5899999999999999999998886543 323221 111111 0 23455556663 1234 58999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT 178 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v 178 (393)
||.+++.. .+..++..+.+.|+ ++|=.|+..-
T Consensus 65 v~~a~g~~------------------~s~~~a~~~~~~G~-~VID~ss~~R 96 (339)
T TIGR01296 65 ALFSAGGS------------------VSKEFAPKAAKCGA-IVIDNTSAFR 96 (339)
T ss_pred EEECCCHH------------------HHHHHHHHHHHCCC-EEEECCHHHh
Confidence 99998742 13345555556676 5776776443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.12 Score=42.46 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=84.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-------HHHHHHHhh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-------KAVNKIFAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-------~~~~~~~~~ 122 (393)
.||+|-||-|-+|+++++.+.+++|-|.-++....... ..-.++.+|-.=. +++.+.+..
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------------d~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------------DSSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 58999999999999999999999998888765332211 1112333443212 233344555
Q ss_pred CCCcEEEEcccccCcc-C----CccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEee-cceeecCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVG-E----STLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSS-TCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~-~----~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~S-S~~vyg~~~~~~~~E~~~~~p 195 (393)
++.|.||..||-..-. . ...+....++..+....--...+..+ +..-++.+. .-...+..++
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPg----------- 139 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPG----------- 139 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCc-----------
Confidence 7899999999754221 1 12233344444433322222222222 323344433 3223333222
Q ss_pred CChHHHHHHHHHHHHHHHHhh-CCCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT-TNMA 220 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~-~g~~ 220 (393)
--.||..|.+..+....++.+ .|++
T Consensus 140 MIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 140 MIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred ccchhHHHHHHHHHHHHhcccccCCC
Confidence 457999999999999998766 4543
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.024 Score=53.19 Aligned_cols=117 Identities=12% Similarity=0.031 Sum_probs=74.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEE-ccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIY-ADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~ 125 (393)
++||.|+| +|.+|..++..|+..|. +|+.+++...........+.... ......++.. +| . +.+ .++
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d---~----~~l--~~a 75 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNN---Y----EDI--AGS 75 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCC---H----HHh--CCC
Confidence 37999999 59999999999999995 88888875543221111111111 1111223332 33 2 345 799
Q ss_pred cEEEEcccccCccCC---ccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeec
Q 016208 126 DAVMHFAAVAYVGES---TLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS 175 (393)
|+||.+++...-... +-+..+.+..|+.-...+++.+.+...+ .+|.+|-
T Consensus 76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999987532211 0145667788998888899888887655 4555553
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.006 Score=57.20 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=73.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCC-CccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQP-GQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.+||.|+|| |.+|+.++..|...| .++..+++...........+....... .... +.+ -.++ + .+ .++|
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~-~~d~---~-~l--~~AD 75 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILG-TNNY---E-DI--KDSD 75 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeE-EEe-CCCH---H-Hh--CCCC
Confidence 369999996 999999999999888 688888875433322221122211100 1112 221 1122 3 45 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~SS 175 (393)
+||.+++..... .......+..|..-...+.+.+.+...+. +|.+|-
T Consensus 76 iVVitag~~~~~--g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 76 VVVITAGVQRKE--EMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999865322 33456678889988888998888876444 555543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0048 Score=60.96 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=56.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+++|+|+|+ |.+|+.+++.|.+.|++|+++++.... .+.+.+. ..++.++.||..+++.+.++-- .++|.
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~----~~~~~~~---~~~~~~i~gd~~~~~~L~~~~~-~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPER----AEELAEE---LPNTLVLHGDGTDQELLEEEGI-DEADA 300 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHHH---CCCCeEEECCCCCHHHHHhcCC-ccCCE
Confidence 4689999996 999999999999999999998764321 1122111 1467889999999998876542 58898
Q ss_pred EEEcc
Q 016208 128 VMHFA 132 (393)
Q Consensus 128 Vi~~A 132 (393)
||-+.
T Consensus 301 vi~~~ 305 (453)
T PRK09496 301 FIALT 305 (453)
T ss_pred EEECC
Confidence 87543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=56.50 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=30.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 85 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 85 (393)
||+|.|.| +|.||..|+++|.+.||+|++-+|..++
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChh
Confidence 67777777 8999999999999999999998664443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00093 Score=54.25 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...++++|.|+ |..|+.++..|.+.|.+ |+++.|...+.....+.+ ....+.++..+ + +.+.+ .++
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~-----~~~~~~~~~~~--~---~~~~~--~~~ 76 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF-----GGVNIEAIPLE--D---LEEAL--QEA 76 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH-----TGCSEEEEEGG--G---HCHHH--HTE
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc-----CccccceeeHH--H---HHHHH--hhC
Confidence 34589999995 99999999999999976 999888543322222222 11244444442 2 33555 689
Q ss_pred cEEEEcccccC
Q 016208 126 DAVMHFAAVAY 136 (393)
Q Consensus 126 d~Vi~~A~~~~ 136 (393)
|+||++.+...
T Consensus 77 DivI~aT~~~~ 87 (135)
T PF01488_consen 77 DIVINATPSGM 87 (135)
T ss_dssp SEEEE-SSTTS
T ss_pred CeEEEecCCCC
Confidence 99999987653
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=55.91 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=93.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-----eEEE--E--eCCCCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHH
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-----RVTI--V--DNLSRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNK 118 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 118 (393)
.-||.|+|++|.+|.+++..|...|. +|.+ + ++...........+.+.. ....++.+..+| .+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~-------y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP-------YE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC-------HH
Confidence 47999999999999999999998863 2333 2 443333333333333321 111122222222 24
Q ss_pred HHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEeecce---eecCCCCCCCCCCCCC
Q 016208 119 IFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSSTCA---TYGEPDKMPITESTPQ 193 (393)
Q Consensus 119 ~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~SS~~---vyg~~~~~~~~E~~~~ 193 (393)
.+ .++|+||.+||...- ...+..+.+..|+.-.+.+.....++. .. ++|.+|-.. +|- .-+..+.
T Consensus 117 ~~--kdaDIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v------~~k~sg~ 186 (387)
T TIGR01757 117 VF--EDADWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALI------AMKNAPN 186 (387)
T ss_pred Hh--CCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHH------HHHHcCC
Confidence 45 799999999997532 244677789999999999999998843 33 455455310 000 0001111
Q ss_pred CC-CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 194 KP-INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 194 ~p-~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
.| ...=..+.+..-++-...+++.+++...++-..|+|..
T Consensus 187 ~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH 227 (387)
T TIGR01757 187 IPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH 227 (387)
T ss_pred CcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence 11 11112223333334444455567777777656777764
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.034 Score=54.74 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCcEEEEEcCC---ChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 48 GVTHVLVTGGA---GYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 48 ~~~~IlItGat---G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
..++|.|+|+| |-+|..+.+.|.+.|+ +|+.+..... .. ..+....++.++-
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-~i--------------------~G~~~~~sl~~lp-- 62 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-EI--------------------LGVKAYPSVLEIP-- 62 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-cc--------------------CCccccCCHHHCC--
Confidence 34789999998 7789999999999997 6887643211 00 1222333444443
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~ 176 (393)
..+|.++-+.. ...+..+++.|.+.|++.+|.+|+.
T Consensus 63 ~~~Dlavi~vp------------------~~~~~~~l~e~~~~gv~~~vi~s~g 98 (447)
T TIGR02717 63 DPVDLAVIVVP------------------AKYVPQVVEECGEKGVKGAVVITAG 98 (447)
T ss_pred CCCCEEEEecC------------------HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 57888875543 2235578888888999999888873
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.01 Score=52.32 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=70.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|+|.|||+ =++.|+++|...+..+++.+-...... .. .+....+.+-..+.+.+.+++++.++|.|
T Consensus 2 ~~~ilvlGGT~-Dar~la~~L~~~~~~~~~ss~t~~g~~-l~---------~~~~~~~~~G~l~~e~l~~~l~e~~i~ll 70 (257)
T COG2099 2 MMRILLLGGTS-DARALAKKLAAAPVDIILSSLTGYGAK-LA---------EQIGPVRVGGFLGAEGLAAFLREEGIDLL 70 (257)
T ss_pred CceEEEEeccH-HHHHHHHHhhccCccEEEEEccccccc-ch---------hccCCeeecCcCCHHHHHHHHHHcCCCEE
Confidence 58999999986 589999999999855555443222221 11 12233666777899999999999999999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
|+..-++ -..-+.|.+++|+..|++.+.|
T Consensus 71 IDATHPy---------------Aa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 71 IDATHPY---------------AARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred EECCChH---------------HHHHHHHHHHHHHHhCCcEEEE
Confidence 9875321 1456889999999999975544
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=51.26 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=66.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|.|+. .+|.++++.|...|. ++++++...-.. +...+.++++.+. -.++.+...
T Consensus 22 s~VlIiG~g-glG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~-v~i~~~~~~ 99 (197)
T cd01492 22 ARILLIGLK-GLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR-VKVSVDTDD 99 (197)
T ss_pred CcEEEEcCC-HHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC-CEEEEEecC
Confidence 689999964 599999999999996 577776431111 1112223344222 344555555
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
+.+ ...+.+ .++|+||.+... ...-..+-+.|++.++ .+|+.++.+.+|.
T Consensus 100 ~~~--~~~~~~--~~~dvVi~~~~~-----------------~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 149 (197)
T cd01492 100 ISE--KPEEFF--SQFDVVVATELS-----------------RAELVKINELCRKLGV-KFYATGVHGLFGF 149 (197)
T ss_pred ccc--cHHHHH--hCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEecCCEEE
Confidence 542 234556 688999976421 1223345578888888 5888888776654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=51.38 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=102.1
Q ss_pred cCCCCCCCCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 40 KAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 40 ~~~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
..+.....++-+|.|.||.|.||+.|...|.... .+....+... .......+..+. -.-......-+++++
T Consensus 19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~--~~GVaaDlSHI~-----T~s~V~g~~g~~~L~ 91 (345)
T KOG1494|consen 19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN--TPGVAADLSHIN-----TNSSVVGFTGADGLE 91 (345)
T ss_pred ccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeeccc--CCcccccccccC-----CCCceeccCChhHHH
Confidence 3445556777899999999999999988775432 1223322211 111111111111 011112334467899
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC------
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST------ 191 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~------ 191 (393)
.++ .+.|+||--||+..- .-...+..|.+|..-...|..++.+.-....|.+=| +|++-..
T Consensus 92 ~al--~~advVvIPAGVPRK--PGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs---------NPVNstVPIaaev 158 (345)
T KOG1494|consen 92 NAL--KGADVVVIPAGVPRK--PGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS---------NPVNSTVPIAAEV 158 (345)
T ss_pred HHh--cCCCEEEecCCCCCC--CCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec---------CcccccchHHHHH
Confidence 999 899999999997643 344567789999999999999988775444444333 1332222
Q ss_pred -----CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEE-EeeccccCC
Q 016208 192 -----PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI-LRYFNVIGS 232 (393)
Q Consensus 192 -----~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~i-lRp~~v~G~ 232 (393)
-..|...+|.+.+-.-+.-...++..+++... +..+.|=|+
T Consensus 159 lKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGH 205 (345)
T KOG1494|consen 159 LKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGH 205 (345)
T ss_pred HHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCc
Confidence 23455667777776666555555545555322 444555444
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0017 Score=62.31 Aligned_cols=46 Identities=30% Similarity=0.536 Sum_probs=38.0
Q ss_pred CCCCcCCCCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 36 SNSTKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 36 ~~~~~~~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
......+....+.+++|.|+||.|.+|..+++.|.+.|++|++++|
T Consensus 85 ~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 85 SENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred HhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 3344445555557789999999999999999999999999999876
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=58.01 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.|+||.|.||||+.|..|++.|..+. .++..++..........+....+ .+..-......+.+.+ ...++|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l----~g~~~l~~~~~~~~~~----~~~~~D 72 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNL----RGLVDLPFQTIDPEKI----ELDECD 72 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCccc----ccccccccccCChhhh----hcccCC
Confidence 37899999999999999999999985 47666543222222222221111 1111111222223322 226799
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC--CCCCCCCCC---CCCCChHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD--KMPITESTP---QKPINPYGK 201 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~--~~~~~E~~~---~~p~~~Y~~ 201 (393)
+||.+.... ....++....+.++ ++|=+|...-+.+.. ..++.++.+ ....+.||.
T Consensus 73 vvFlalPhg------------------~s~~~v~~l~~~g~-~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 73 VVFLALPHG------------------VSAELVPELLEAGC-KVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred EEEEecCch------------------hHHHHHHHHHhCCC-eEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 999775321 12345555555666 588888866553221 112222211 223566776
Q ss_pred HHHHHHHH
Q 016208 202 AKKMSEDI 209 (393)
Q Consensus 202 sK~~~E~~ 209 (393)
.-+..|++
T Consensus 134 pEl~~e~i 141 (349)
T COG0002 134 PELHREKI 141 (349)
T ss_pred cccCHHHH
Confidence 66666554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0066 Score=48.65 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=65.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
++|+++| .| .|.+++..|.+.|++|++++.+... .+..++ ..++++.+|+.+++. +.- .++|.|.
T Consensus 18 ~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~a----V~~a~~-----~~~~~v~dDlf~p~~--~~y--~~a~liy 82 (134)
T PRK04148 18 KKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKA----VEKAKK-----LGLNAFVDDLFNPNL--EIY--KNAKLIY 82 (134)
T ss_pred CEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHH----HHHHHH-----hCCeEEECcCCCCCH--HHH--hcCCEEE
Confidence 6899999 68 9999999999999999999875432 222222 367899999998863 222 5788887
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
-+= .+ .+-...+++.+++.++.-+|.
T Consensus 83 sir----------pp-------~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 83 SIR----------PP-------RDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred EeC----------CC-------HHHHHHHHHHHHHcCCCEEEE
Confidence 331 11 223456889999999876665
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=55.21 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=56.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCe---EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYR---VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
++|.|.||||++|..|++.|.+++|. +..+.. .+....... . .+..+...++. . +.+ .++|
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las-~rsaGk~~~---~-----~~~~~~v~~~~-~----~~~--~~~D 71 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS-ARSAGKKVT---F-----EGRDYTVEELT-E----DSF--DGVD 71 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc-cCCCCCeee---e-----cCceeEEEeCC-H----HHH--cCCC
Confidence 79999999999999999999998873 433322 111111110 0 12233333332 2 234 5799
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATY 179 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vy 179 (393)
+||.+++.. ....++..+.+.|+ ++|=.|+..-+
T Consensus 72 ~vf~a~p~~------------------~s~~~~~~~~~~g~-~VIDlS~~fR~ 105 (344)
T PLN02383 72 IALFSAGGS------------------ISKKFGPIAVDKGA-VVVDNSSAFRM 105 (344)
T ss_pred EEEECCCcH------------------HHHHHHHHHHhCCC-EEEECCchhhc
Confidence 999887532 13345555555676 68878886554
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0051 Score=55.99 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+++|.|+|+.| +|.--++...+.|++|+++++..++.+++.+.+ +.+.+..-..|++.+.++. .--|.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L--------GAd~fv~~~~d~d~~~~~~--~~~dg 249 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL--------GADVFVDSTEDPDIMKAIM--KTTDG 249 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc--------CcceeEEecCCHHHHHHHH--HhhcC
Confidence 568999999988 999999999999999999998765555444332 4555544444788888777 45566
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
++|++..... . ....+++.++.. .++|+++-
T Consensus 250 ~~~~v~~~a~-----~----------~~~~~~~~lk~~--Gt~V~vg~ 280 (360)
T KOG0023|consen 250 GIDTVSNLAE-----H----------ALEPLLGLLKVN--GTLVLVGL 280 (360)
T ss_pred cceeeeeccc-----c----------chHHHHHHhhcC--CEEEEEeC
Confidence 6666542210 0 123456666655 37888875
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.015 Score=47.53 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=67.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCC-------------------CchhhhhhhhhcCCCCccEEEEccC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
+|+|.|+ |.+|.++++.|...|. ++++++...-. .+...+.++++.+ .-.++.+..++
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p-~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP-GVNVTAVPEGI 78 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC-CcEEEEEeeec
Confidence 5899994 9999999999999997 67777643110 0112222333321 13444555555
Q ss_pred CCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 111 ~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
.... ..+.+ .++|+||.+... ......+.+.|++.++ .+|..++...+|
T Consensus 79 ~~~~-~~~~~--~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i-~~i~~~~~g~~g 127 (143)
T cd01483 79 SEDN-LDDFL--DGVDLVIDAIDN-----------------IAVRRALNRACKELGI-PVIDAGGLGLGG 127 (143)
T ss_pred Chhh-HHHHh--cCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEcCCCcEE
Confidence 4433 35556 789999988642 2234567788998887 477777755443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=52.56 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=68.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCc-------------h---h----hhhhhhhcCCCCccEEEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNM-------------G---A----VKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------~---~----~~~~~~~~~~~~~~~~~~ 107 (393)
..+|+|.| .|.+|+++++.|...|. ++++++...-... . + .+.+.++.+ .-.++.+.
T Consensus 27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np-~v~v~~~~ 104 (231)
T PRK08328 27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS-DIKIETFV 104 (231)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC-CCEEEEEe
Confidence 36899999 69999999999999995 6777764211000 0 0 111222222 23445555
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
..+ +.+.+.+++ .++|+||.+... ...-..+-+.|++.++ .+|+.++.+.+|.
T Consensus 105 ~~~-~~~~~~~~l--~~~D~Vid~~d~-----------------~~~r~~l~~~~~~~~i-p~i~g~~~g~~G~ 157 (231)
T PRK08328 105 GRL-SEENIDEVL--KGVDVIVDCLDN-----------------FETRYLLDDYAHKKGI-PLVHGAVEGTYGQ 157 (231)
T ss_pred ccC-CHHHHHHHH--hcCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEeeccCEEE
Confidence 555 445566777 688999988632 1112234567888887 5888888777764
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0083 Score=59.16 Aligned_cols=76 Identities=24% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+++|+|+|++| +|.+.++.|.+.|++|++.++.........+.+.. .++.+..++. ...+ +. .++|.
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~-----~g~~~~~~~~--~~~~---~~-~~~d~ 71 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLE-----EGIKVICGSH--PLEL---LD-EDFDL 71 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHh-----cCCEEEeCCC--CHHH---hc-CcCCE
Confidence 457999999977 99999999999999999987643222222222222 2555555432 2221 21 24899
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
||..+|+.
T Consensus 72 vV~s~gi~ 79 (447)
T PRK02472 72 MVKNPGIP 79 (447)
T ss_pred EEECCCCC
Confidence 99999875
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.01 Score=56.42 Aligned_cols=110 Identities=19% Similarity=0.125 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCC-------------------CCchhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNMGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.| .|.+|+++++.|...|. ++++++...- +.+...+.+.++.+. -.++.+.
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~v~~~~ 104 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-VKVTVSV 104 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-cEEEEEE
Confidence 337999999 59999999999999986 6776665321 111222333343222 3455555
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
..+. .+...+++ .++|+||.+... ...-..+-++|.+.+++ +|+.++.+.+|
T Consensus 105 ~~i~-~~~~~~~~--~~~DvVvd~~d~-----------------~~~r~~~n~~c~~~~ip-~v~~~~~g~~g 156 (355)
T PRK05597 105 RRLT-WSNALDEL--RDADVILDGSDN-----------------FDTRHLASWAAARLGIP-HVWASILGFDA 156 (355)
T ss_pred eecC-HHHHHHHH--hCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCC-EEEEEEecCeE
Confidence 5554 44556677 689999988732 12222356788888874 88876655444
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=55.20 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=31.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|.|+||+|.+|+.++..|.+.|++|.+.+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 5899999999999999999999999999987754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0067 Score=59.33 Aligned_cols=79 Identities=22% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC
Q 016208 47 PGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 47 ~~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
..+++||||+| ||-.|.+|++++..+|.+|+.+.-...-. .+.+++++..
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~------------~p~~v~~i~V-- 319 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA------------DPQGVKVIHV-- 319 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC------------CCCCceEEEe--
Confidence 56689999976 89999999999999999999986422110 1245666654
Q ss_pred CCHHHHHHHHhh-CCCcEEEEcccccCccC
Q 016208 111 GDAKAVNKIFAE-NAFDAVMHFAAVAYVGE 139 (393)
Q Consensus 111 ~~~~~~~~~~~~-~~~d~Vi~~A~~~~~~~ 139 (393)
...+++.+++.+ ...|++|++|++.++..
T Consensus 320 ~ta~eM~~av~~~~~~Di~I~aAAVaDyrp 349 (475)
T PRK13982 320 ESARQMLAAVEAALPADIAIFAAAVADWRV 349 (475)
T ss_pred cCHHHHHHHHHhhCCCCEEEEeccccceee
Confidence 456666655533 35899999999987653
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=56.89 Aligned_cols=110 Identities=25% Similarity=0.259 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC-------------------CCCchhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNMGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.| .|.+|++++..|...|. +++++++.. .+.+...+.+.++.+. -.+..+.
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-v~v~~~~ 211 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD-VQVEAVQ 211 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC-CEEEEEe
Confidence 346899998 58999999999999996 688877641 1111222333333221 2334444
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
..+. .+.+.+++ .++|+||++.... ..-..+-+.|.+.++ .+|+.+..+.+|
T Consensus 212 ~~~~-~~~~~~~~--~~~D~Vv~~~d~~-----------------~~r~~ln~~~~~~~i-p~i~~~~~g~~g 263 (376)
T PRK08762 212 ERVT-SDNVEALL--QDVDVVVDGADNF-----------------PTRYLLNDACVKLGK-PLVYGAVFRFEG 263 (376)
T ss_pred ccCC-hHHHHHHH--hCCCEEEECCCCH-----------------HHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 4443 34566777 6899999886421 112236678888887 588877654443
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=52.04 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=67.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.| .|.+|+++++.|...|. ++++++...-.. +...+.+.++.+. -.++.+.
T Consensus 23 ~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~-v~i~~~~ 100 (240)
T TIGR02355 23 KASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH-IAINPIN 100 (240)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC-cEEEEEe
Confidence 336899999 69999999999999985 666665532111 1112223333211 2344444
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
..+ +.+.+.+++ .++|+||.+... ...-..+-+.|.+.++ .+|+.++.+.+|
T Consensus 101 ~~i-~~~~~~~~~--~~~DlVvd~~D~-----------------~~~r~~ln~~~~~~~i-p~v~~~~~g~~G 152 (240)
T TIGR02355 101 AKL-DDAELAALI--AEHDIVVDCTDN-----------------VEVRNQLNRQCFAAKV-PLVSGAAIRMEG 152 (240)
T ss_pred ccC-CHHHHHHHh--hcCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEecccEe
Confidence 444 345566777 689999988632 2223345688888887 477766654444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.029 Score=52.15 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred EEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 52 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|.|+|+ |.+|..++..|+..| .++.++++...........+.+............+ .+ .+.+ .++|+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l--~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADA--ADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHh--CCCCEEE
Confidence 568895 899999999999988 68999988655445444445444322122233322 12 2345 7999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
.+||...- ...+....+..|+.-.+.+.+...+.+.+-+|.
T Consensus 72 itag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~vi 112 (300)
T cd00300 72 ITAGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAIIL 112 (300)
T ss_pred EcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 99986432 234567788899999999999998886443443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0053 Score=56.72 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=55.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCe---EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYR---VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|++|.|.||||.+|+.+++.|.++... +..+. +.++.-.. .+++....+.-++...+.....++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~A-S~rSaG~~------------~~~f~~~~~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLA-SARSAGKK------------YIEFGGKSIGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEe-cccccCCc------------cccccCccccCccccccccccccC
Confidence 579999999999999999999997542 23322 12222111 122222222222222222222589
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~ 176 (393)
|+||.++|.. .++.+...+.++|+ -+|=-||.
T Consensus 68 Divf~~ag~~------------------~s~~~~p~~~~~G~-~VIdnsSa 99 (334)
T COG0136 68 DIVFFAAGGS------------------VSKEVEPKAAEAGC-VVIDNSSA 99 (334)
T ss_pred CEEEEeCchH------------------HHHHHHHHHHHcCC-EEEeCCcc
Confidence 9999999742 13567777888874 34444443
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.026 Score=50.72 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.|+ |.+|+++++.|...|. ++++++...-.. +...+.+.++.+. -.++.+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~-v~i~~~~ 108 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH-IAIETIN 108 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC-CEEEEEe
Confidence 3479999996 9999999999999985 677665421111 1112233333221 3445555
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceee
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATY 179 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vy 179 (393)
..+. .+.+.+++ .++|+||.+... ...-..+-+.|.+.++ .+|+.++.+.+
T Consensus 109 ~~i~-~~~~~~~~--~~~DiVi~~~D~-----------------~~~r~~ln~~~~~~~i-p~v~~~~~g~~ 159 (245)
T PRK05690 109 ARLD-DDELAALI--AGHDLVLDCTDN-----------------VATRNQLNRACFAAKK-PLVSGAAIRME 159 (245)
T ss_pred ccCC-HHHHHHHH--hcCCEEEecCCC-----------------HHHHHHHHHHHHHhCC-EEEEeeeccCC
Confidence 5554 45566777 789999988631 1222346677888887 47776554333
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.077 Score=52.59 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCC-ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC----CCccEEEEccCCCHHHHHHHHh
Q 016208 47 PGVTHVLVTGGA-GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ----PGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 47 ~~~~~IlItGat-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
...+-.+||||+ |-||..++..|++-|..|++++. +-..+..+..+.++.. ...+-++..+...+.++..+++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS--~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIe 471 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTS--RLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIE 471 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcc--cccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHH
Confidence 344789999976 88999999999999999998742 2222333334444332 2445677788877766665543
Q ss_pred h-------------------CCCcEEEEcccccCccC---CccChHHHHHHHHHHHHHHHHHHHhcCCc-------EEEE
Q 016208 122 E-------------------NAFDAVMHFAAVAYVGE---STLEPLRYYHNITSNTLVILEAMAAHKVK-------TLIY 172 (393)
Q Consensus 122 ~-------------------~~~d~Vi~~A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-------~~V~ 172 (393)
= ..+|.+|-.|++..... .....+...++-+....+++-..++.+.. ++|.
T Consensus 472 wIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVL 551 (866)
T COG4982 472 WIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVL 551 (866)
T ss_pred HhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEe
Confidence 2 24788998888653221 11223345556667777777777665432 3454
Q ss_pred eecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 016208 173 SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT 217 (393)
Q Consensus 173 ~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~ 217 (393)
-.|. +. .-+.....|+.+|...|.++..+..+.
T Consensus 552 PgSP------Nr------G~FGgDGaYgEsK~aldav~~RW~sEs 584 (866)
T COG4982 552 PGSP------NR------GMFGGDGAYGESKLALDAVVNRWHSES 584 (866)
T ss_pred cCCC------CC------CccCCCcchhhHHHHHHHHHHHhhccc
Confidence 4441 00 011225679999999999988766554
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=49.45 Aligned_cols=107 Identities=20% Similarity=0.292 Sum_probs=64.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCC------------------CCchhhhhhhhhcCCCCccEEEEccCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR------------------GNMGAVKVLQELFPQPGQLQFIYADLG 111 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 111 (393)
+|+|.| .|.+|+.+++.|...|. ++++++...- +.....+.++++.+. .++..+...+.
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~-v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPF-VKIEAINIKID 78 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCC-CEEEEEEeecC
Confidence 589999 59999999999999997 5888776420 011112223333221 34555555554
Q ss_pred CHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeec
Q 016208 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYG 180 (393)
Q Consensus 112 ~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg 180 (393)
. +.+.+.+ .++|+||.+... ...-..+.+.|.+. ++ .+|+.+...-|+
T Consensus 79 ~-~~~~~~l--~~~DlVi~~~d~-----------------~~~r~~i~~~~~~~~~i-p~i~~~~~~~~~ 127 (174)
T cd01487 79 E-NNLEGLF--GDCDIVVEAFDN-----------------AETKAMLAESLLGNKNK-PVVCASGMAGFG 127 (174)
T ss_pred h-hhHHHHh--cCCCEEEECCCC-----------------HHHHHHHHHHHHHHCCC-CEEEEehhhccC
Confidence 3 5566777 789999988431 11223456666665 66 477665444443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=54.50 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=70.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCC-CCccEEE-EccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFI-YADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~-~~Dl~~~~~~~~~~~~~~~d 126 (393)
|+|.|+|+ |.+|..++..|+..|+ +|++++............+.+.... .....+. ..| . .+ + .++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d---~---~~-~--~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNN---Y---AD-T--ANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCC---H---HH-h--CCCC
Confidence 58999995 9999999999999886 8999987433222111111111000 0111221 123 2 23 4 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+||-++|...- ........+..|+...+.+++.+.+.+.. .+|.+|
T Consensus 72 iVIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 72 IVVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred EEEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999986422 23345668889999999999988877533 344444
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=54.81 Aligned_cols=108 Identities=24% Similarity=0.249 Sum_probs=69.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEccC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
+|||.| .|.+|..+++.|...|. ++++++...-.. +...+.+.++.+ .-.+..+..++
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp-~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNP-NVKIVAYHANI 78 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCC-CCeEEEEeccC
Confidence 589999 59999999999999985 677665421111 111222333322 23566677777
Q ss_pred CCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 111 ~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
.+.....+.+ .++|+||.+.- |...-..+-+.|+..++ .+|..++.+.+|
T Consensus 79 ~~~~~~~~f~--~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~i-p~I~~gt~G~~G 128 (312)
T cd01489 79 KDPDFNVEFF--KQFDLVFNALD-----------------NLAARRHVNKMCLAADV-PLIESGTTGFLG 128 (312)
T ss_pred CCccchHHHH--hcCCEEEECCC-----------------CHHHHHHHHHHHHHCCC-CEEEEecCccee
Confidence 7654445666 68999987752 12334456678888887 588888777655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=50.27 Aligned_cols=109 Identities=21% Similarity=0.310 Sum_probs=67.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCC------------------CchhhhhhhhhcCCCCccEEEEccC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG------------------NMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
.+|+|.| .|.+|+.+++.|...|. ++++++...-. .+...+.+.++.+. -.++.+...+
T Consensus 29 ~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~-v~v~~~~~~i 106 (212)
T PRK08644 29 AKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF-VEIEAHNEKI 106 (212)
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC-CEEEEEeeec
Confidence 6899999 69999999999999996 57777664110 11112222333221 3445555555
Q ss_pred CCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecC
Q 016208 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGE 181 (393)
Q Consensus 111 ~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~ 181 (393)
.+ +.+.+.+ .++|+||.+.-. ...-..+.+.|.+. ++ .+|+.+...-|+.
T Consensus 107 ~~-~~~~~~~--~~~DvVI~a~D~-----------------~~~r~~l~~~~~~~~~~-p~I~~~~~~~~~~ 157 (212)
T PRK08644 107 DE-DNIEELF--KDCDIVVEAFDN-----------------AETKAMLVETVLEHPGK-KLVAASGMAGYGD 157 (212)
T ss_pred CH-HHHHHHH--cCCCEEEECCCC-----------------HHHHHHHHHHHHHhCCC-CEEEeehhhccCC
Confidence 43 4566777 789999988421 22234566777777 76 5777765444443
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.11 Score=47.69 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=60.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
.||||-|-||.+|+.+.+.|...|..+++-.. +..... . ...+....++.++.+..++|.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~-p~~~~~-------------~----v~G~~~y~sv~dlp~~~~~Dlav 68 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT-PGKGGT-------------T----VLGLPVFDSVKEAVEETGANASV 68 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC-CCCCcc-------------e----ecCeeccCCHHHHhhccCCCEEE
Confidence 68999999999999999999999987444222 221010 0 12334455666665211379888
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~ 176 (393)
-+... ..+..+++.|.+.|++.+|.+|+.
T Consensus 69 i~vpa------------------~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 69 IFVPA------------------PFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred EecCH------------------HHHHHHHHHHHHCCCCEEEEECCC
Confidence 76542 234567788888999988888874
|
ATP citrate lyases appear to form an outgroup. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0097 Score=57.57 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH----HHHHHHHhhC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA----KAVNKIFAEN 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~----~~~~~~~~~~ 123 (393)
.+|+|||||+...+|..+++.|.+.|++|++++..........+.+ .....+...-.+. +.+.+++++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~-------d~~~~~p~p~~d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV-------DGFYTIPSPRWDPDAYIQALLSIVQRE 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh-------hheEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999999999999976432211100111 1111121111232 5566777778
Q ss_pred CCcEEEEccc
Q 016208 124 AFDAVMHFAA 133 (393)
Q Consensus 124 ~~d~Vi~~A~ 133 (393)
++|+||-+..
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 9999998764
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=54.05 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=27.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r 81 (393)
+||.|+|+||++|++|++.|..++ .++..+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEE
Confidence 589999999999999999998876 58887743
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0044 Score=51.42 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=47.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.++|+|+|+ |.+|..+++.|.+.| ++|++++|......... .++ ....+..+..+.+ +.+ .++|+
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~---~~~-----~~~~~~~~~~~~~---~~~--~~~Dv 84 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALA---ERF-----GELGIAIAYLDLE---ELL--AEADL 84 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH---HHH-----hhcccceeecchh---hcc--ccCCE
Confidence 479999996 999999999999996 78999877433222111 111 1110112333333 334 68999
Q ss_pred EEEcccccC
Q 016208 128 VMHFAAVAY 136 (393)
Q Consensus 128 Vi~~A~~~~ 136 (393)
||.+.....
T Consensus 85 vi~~~~~~~ 93 (155)
T cd01065 85 IINTTPVGM 93 (155)
T ss_pred EEeCcCCCC
Confidence 999987543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0066 Score=47.79 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=49.6
Q ss_pred cEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
++|.|+|+| +-.|..+.+.|.+.|++|+.+.-.... - .+... ..++.+. ...+|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-i-------------~G~~~-------y~sl~e~--p~~iD 57 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-I-------------LGIKC-------YPSLAEI--PEPID 57 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-E-------------TTEE--------BSSGGGC--SST-S
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-E-------------CcEEe-------eccccCC--CCCCC
Confidence 579999998 778999999999999999998432211 0 11111 1111221 16788
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
.++.+... ..+..+++.|.+.|++.+++.++
T Consensus 58 lavv~~~~------------------~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 58 LAVVCVPP------------------DKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp EEEE-S-H------------------HHHHHHHHHHHHHT-SEEEE-TT
T ss_pred EEEEEcCH------------------HHHHHHHHHHHHcCCCEEEEEcc
Confidence 88766532 23456788888888888888776
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=56.70 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=52.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|++|+|+|+ |++|+.++..+.+.|++|++++......... -.-..+.+|..|.+.+.++. ..+|+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~-----------~ad~~~~~~~~D~~~l~~~a--~~~dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQ-----------VADEVIVADYDDVAALRELA--EQCDVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhH-----------hCceEEecCCCCHHHHHHHH--hcCCEE
Confidence 689999995 8999999999999999999997643322100 11245668899999999998 689987
Q ss_pred EE
Q 016208 129 MH 130 (393)
Q Consensus 129 i~ 130 (393)
..
T Consensus 68 t~ 69 (372)
T PRK06019 68 TY 69 (372)
T ss_pred Ee
Confidence 53
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=53.52 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=58.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
.||+++| ||-+|+.++-++...|.+|++++|-...+.-. ---.-+..|..|.+++.+.+++.+||.||
T Consensus 13 ~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAmq-----------VAhrs~Vi~MlD~~al~avv~rekPd~IV 80 (394)
T COG0027 13 TKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-----------VAHRSYVIDMLDGDALRAVVEREKPDYIV 80 (394)
T ss_pred eEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhhh-----------hhhheeeeeccCHHHHHHHHHhhCCCeee
Confidence 6899999 89999999999999999999999965433211 11234567999999999999999999998
Q ss_pred Eccc
Q 016208 130 HFAA 133 (393)
Q Consensus 130 ~~A~ 133 (393)
--..
T Consensus 81 pEiE 84 (394)
T COG0027 81 PEIE 84 (394)
T ss_pred ehhh
Confidence 6543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0059 Score=47.93 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=52.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
|+|+| .|-+|..+++.|.+.+.+|+++++.... .+.+.+ .++.++.||..+++.+.++-- .+++.||-+
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~----~~~~~~-----~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPER----VEELRE-----EGVEVIYGDATDPEVLERAGI-EKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHH----HHHHHH-----TTSEEEES-TTSHHHHHHTTG-GCESEEEEE
T ss_pred eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHH----HHHHHh-----cccccccccchhhhHHhhcCc-cccCEEEEc
Confidence 68899 5899999999999977799998764322 222222 468899999999999998743 578888866
Q ss_pred c
Q 016208 132 A 132 (393)
Q Consensus 132 A 132 (393)
.
T Consensus 70 ~ 70 (116)
T PF02254_consen 70 T 70 (116)
T ss_dssp S
T ss_pred c
Confidence 4
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.022 Score=50.67 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=68.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEccC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
+|||.| .|.+|..+++.|...|. ++++++...-.. ....+.+.++.+ .-++..+..++
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np-~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNP-NCKVVPYQNKV 78 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCC-CCEEEEEeccC
Confidence 589999 69999999999999986 666666431110 011222233322 13456666777
Q ss_pred CCHHHH-HHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 111 GDAKAV-NKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 111 ~~~~~~-~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
.+.+.+ .+++ .++|+||.+.. |...-..+-+.|...++ .+|..++.+.+|.
T Consensus 79 ~~~~~~~~~f~--~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~G~ 130 (234)
T cd01484 79 GPEQDFNDTFF--EQFHIIVNALD-----------------NIIARRYVNGMLIFLIV-PLIESGTEGFKGN 130 (234)
T ss_pred ChhhhchHHHH--hCCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcccCCceE
Confidence 554333 3455 68999998752 23344557778888887 4888877666553
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0063 Score=56.82 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+..++|.|+| +|.+|..++..|+..|++|+++++..
T Consensus 5 ~~i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 5 TDIKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3457899999 69999999999999999999998754
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.017 Score=55.92 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..|+|+|+| +|..|..++..+.+.|++|++++......... + .-.++..|..|.+.+.+++++.++|.
T Consensus 11 ~~~~ilIiG-~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~---~--------ad~~~~~~~~d~~~l~~~~~~~~id~ 78 (395)
T PRK09288 11 SATRVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ---V--------AHRSHVIDMLDGDALRAVIEREKPDY 78 (395)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH---h--------hhheEECCCCCHHHHHHHHHHhCCCE
Confidence 447999999 58999999999999999999987643221110 0 11246678889999999997779999
Q ss_pred EEEcc
Q 016208 128 VMHFA 132 (393)
Q Consensus 128 Vi~~A 132 (393)
|+...
T Consensus 79 vi~~~ 83 (395)
T PRK09288 79 IVPEI 83 (395)
T ss_pred EEEee
Confidence 98654
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=54.64 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
..++|.|.||||++|..|++.|.++.| ++..+... ++...... + . ...+.+. ++. . ..+ .+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-~saG~~~~----~-~-~~~~~v~--~~~---~--~~~--~~ 66 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-ESAGETLR----F-G-GKSVTVQ--DAA---E--FDW--SQ 66 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-CcCCceEE----E-C-CcceEEE--eCc---h--hhc--cC
Confidence 457999999999999999999999644 55555322 21111111 0 0 0111111 221 1 122 47
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+|+||.+++.. ....++..+.+.|+ ++|=.|+..-+.
T Consensus 67 ~Dvvf~a~p~~------------------~s~~~~~~~~~~g~-~VIDlS~~fRl~ 103 (336)
T PRK08040 67 AQLAFFVAGRE------------------ASAAYAEEATNAGC-LVIDSSGLFALE 103 (336)
T ss_pred CCEEEECCCHH------------------HHHHHHHHHHHCCC-EEEECChHhcCC
Confidence 89999887531 23355666666676 688888866543
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.031 Score=52.98 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=56.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH-CCCe---EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLK-DSYR---VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|++|.|.||||++|+.|++.|++ +..+ +..++.. +... .. ..+ .+-.....++.+.+. + .+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~-~~---~~f----~g~~~~v~~~~~~~~----~--~~ 65 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGG-AA---PSF----GGKEGTLQDAFDIDA----L--KK 65 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCC-cc---ccc----CCCcceEEecCChhH----h--cC
Confidence 58999999999999999995554 4555 5554332 1111 00 111 111222234443332 3 47
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATY 179 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vy 179 (393)
+|+||.+++.. .+..+...+.+.|.+ .+|=.||..-+
T Consensus 66 ~Divf~a~~~~------------------~s~~~~~~~~~aG~~~~VID~Ss~fR~ 103 (369)
T PRK06598 66 LDIIITCQGGD------------------YTNEVYPKLRAAGWQGYWIDAASTLRM 103 (369)
T ss_pred CCEEEECCCHH------------------HHHHHHHHHHhCCCCeEEEECChHHhC
Confidence 99999888632 244566666677753 45657765443
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=54.23 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=52.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|++|.|+| .|++|+.++.+-...|++|++++-........ -.-..+..+..|.+.+.++. .++|+|
T Consensus 1 ~~tvgIlG-GGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~-----------va~~~i~~~~dD~~al~ela--~~~DVi 66 (375)
T COG0026 1 MKTVGILG-GGQLGRMMALAAARLGIKVIVLDPDADAPAAQ-----------VADRVIVAAYDDPEALRELA--AKCDVI 66 (375)
T ss_pred CCeEEEEc-CcHHHHHHHHHHHhcCCEEEEecCCCCCchhh-----------cccceeecCCCCHHHHHHHH--hhCCEE
Confidence 57999999 59999999999999999999987543332211 12245667778999999999 789988
Q ss_pred E
Q 016208 129 M 129 (393)
Q Consensus 129 i 129 (393)
=
T Consensus 67 T 67 (375)
T COG0026 67 T 67 (375)
T ss_pred E
Confidence 4
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.036 Score=52.99 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=68.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCC-------------------CchhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NMGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|+| .|.+|.++++.|...|. ++++++...-. .....+.+.++.+ .-.++.+..
T Consensus 41 ~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np-~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP-DIRVNALRE 118 (370)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC-CCeeEEeee
Confidence 36899999 69999999999999995 78777653110 0111222333322 134555555
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
.+. .+.+.+++ .++|+||.+... ...-..+-+.|.+.+++ +|+.+..+.+|
T Consensus 119 ~i~-~~~~~~~~--~~~DlVid~~Dn-----------------~~~r~~in~~~~~~~iP-~v~~~~~g~~G 169 (370)
T PRK05600 119 RLT-AENAVELL--NGVDLVLDGSDS-----------------FATKFLVADAAEITGTP-LVWGTVLRFHG 169 (370)
T ss_pred ecC-HHHHHHHH--hCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCC-EEEEEEecCEE
Confidence 553 45566777 789999988642 22233455778888874 77776544443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=57.13 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
|.||+|.|+| .|++|..++..|.+.|++|+++++...
T Consensus 1 m~~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSFETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 3468999999 799999999999999999999987543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.015 Score=56.99 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|+|+||+|.+|..+++.|.+.|++|++++|..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 5899999999999999999999999999998753
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=58.00 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=67.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCC-------C-----------CCchhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLS-------R-----------GNMGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|+|. | +|++++..|...|. ++++++... + +.....+.+.++.. .-+++.+..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp-~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDP-YLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCC-CCEEEEEec
Confidence 379999998 8 99999999999984 677765421 1 01112223333322 245666666
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
.+. .+.+.+++ .++|+||.|.-. +..=..+-++|.+.+++ +|+.++
T Consensus 184 ~i~-~~n~~~~l--~~~DlVvD~~D~-----------------~~~R~~ln~~a~~~~iP-~i~~~~ 229 (722)
T PRK07877 184 GLT-EDNVDAFL--DGLDVVVEECDS-----------------LDVKVLLREAARARRIP-VLMATS 229 (722)
T ss_pred cCC-HHHHHHHh--cCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCC-EEEEcC
Confidence 665 67788888 789999998632 22333566888888885 777664
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.028 Score=52.17 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEe
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVD 80 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~ 80 (393)
|++|.|.||||++|..|++.|.++.+ ++..+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~ 34 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIP 34 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 57999999999999999999998864 555543
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.006 Score=48.69 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC-CCchhhhhhhhh-----cCCCCccEEEEccCCCH--HHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNMGAVKVLQEL-----FPQPGQLQFIYADLGDA--KAVNKI 119 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~~~--~~~~~~ 119 (393)
..++|-|+|+ |-+|.+|.+.|.+.||+|..+...+. +.......+... .......+++..-+.|. +.+.+.
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~ 87 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQ 87 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHH
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHH
Confidence 3479999995 99999999999999999998743221 112111111100 00012344444433333 444444
Q ss_pred HhhC----CCcEEEEcccccC
Q 016208 120 FAEN----AFDAVMHFAAVAY 136 (393)
Q Consensus 120 ~~~~----~~d~Vi~~A~~~~ 136 (393)
+... .=.+|+||+|...
T Consensus 88 La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHCC--S-TT-EEEES-SS--
T ss_pred HHHhccCCCCcEEEECCCCCh
Confidence 4332 2359999999754
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.067 Score=47.00 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=70.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCch---------------hhhhhh-hhcCCCCccEEEEc-cCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMG---------------AVKVLQ-ELFPQPGQLQFIYA-DLG 111 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------------~~~~~~-~~~~~~~~~~~~~~-Dl~ 111 (393)
.+|+|+| -|.+|++.++.|...|. ++++++-..-...- +.+.+. .+..-++.+++... |.-
T Consensus 31 ~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 31 AHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred CcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 5899999 59999999999999985 56665432111110 111111 11222455665443 566
Q ss_pred CHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC
Q 016208 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP 182 (393)
Q Consensus 112 ~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~ 182 (393)
.++.+.+++. .++|+||.+.- ++..=..|++.|+++++ -++||+++-+..
T Consensus 110 t~en~~~~~~-~~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki---~vIss~Gag~k~ 159 (263)
T COG1179 110 TEENLEDLLS-KGFDYVIDAID-----------------SVRAKVALIAYCRRNKI---PVISSMGAGGKL 159 (263)
T ss_pred CHhHHHHHhc-CCCCEEEEchh-----------------hhHHHHHHHHHHHHcCC---CEEeeccccCCC
Confidence 7788888885 38999998863 24444578999999876 355676665543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.017 Score=48.58 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
...++|+|+|+++.+|..+++.|.++|.+|+++.|.. +++.+.+ ..+|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l--~~aD 89 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHT--KQAD 89 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHH--hhCC
Confidence 4558999999866789999999999999998887621 2345566 6899
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+||.+.+..
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999888753
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.055 Score=49.42 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=65.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCC-------------------CCchhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNMGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|.| .|.+|+++++.|...|. ++.+++...- +.+...+.+.++.+. .+++.+...
T Consensus 28 s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~-v~V~~~~~~ 105 (287)
T PRK08223 28 SRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE-LEIRAFPEG 105 (287)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC-CEEEEEecc
Confidence 6899999 69999999999999985 5666654211 111122233333221 345555555
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
+. .+.+.+++ .++|+||++.-.. ++..-..+-++|.+.++ -+|+.|..+
T Consensus 106 l~-~~n~~~ll--~~~DlVvD~~D~~---------------~~~~r~~ln~~c~~~~i-P~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAFL--DGVDVYVDGLDFF---------------EFDARRLVFAACQQRGI-PALTAAPLG 154 (287)
T ss_pred cC-ccCHHHHH--hCCCEEEECCCCC---------------cHHHHHHHHHHHHHcCC-CEEEEeccC
Confidence 54 34456677 6899998665211 01223456688999887 478765533
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.047 Score=48.68 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=54.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEE-EeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTI-VDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||||.|.|++|-+|+.|++.+.+.+ .++.+ +.|...... -....++. ++..+..-+.+. +.... .++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~--g~d~ge~~----g~~~~gv~v~~~--~~~~~--~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSL--GSDAGELA----GLGLLGVPVTDD--LLLVK--ADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcccc--ccchhhhc----cccccCceeecc--hhhcc--cCCC
Confidence 6899999999999999999999875 55544 444332111 00001110 111111111111 22333 7899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 168 (393)
++|....+. ++...++.|.+++++
T Consensus 72 V~IDFT~P~------------------~~~~~l~~~~~~~~~ 95 (266)
T COG0289 72 VLIDFTTPE------------------ATLENLEFALEHGKP 95 (266)
T ss_pred EEEECCCch------------------hhHHHHHHHHHcCCC
Confidence 999886531 366788999999864
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=53.17 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...+++|+|+|++|.+|+.++..|+++|.+|+++.|. ...+.+.+ .++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~------------------------------t~~L~~~~--~~a 203 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR------------------------------TQNLPELV--KQA 203 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC------------------------------chhHHHHh--ccC
Confidence 3556899999999999999999999999999887551 12234445 689
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||++.|.
T Consensus 204 DIvI~AtG~ 212 (283)
T PRK14192 204 DIIVGAVGK 212 (283)
T ss_pred CEEEEccCC
Confidence 999999973
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0092 Score=54.85 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|+ |.+|++++..|...| .+|++++|.........+.+.. ...+.+ +. +..+.+ .++|
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~----~~~~~~---~~----~~~~~~--~~~D 187 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA----LGKAEL---DL----ELQEEL--ADFD 187 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh----ccceee---cc----cchhcc--ccCC
Confidence 3479999995 999999999999999 7999998854332222222211 011121 11 123444 6799
Q ss_pred EEEEcccccC
Q 016208 127 AVMHFAAVAY 136 (393)
Q Consensus 127 ~Vi~~A~~~~ 136 (393)
+||++.....
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999987543
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.11 Score=48.21 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=68.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEE-ccCCCHHHHHHHHhhCCCcEE
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIY-ADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|.|+|+ |.+|..++..|...|. +|+++++...........+.+.... .....+.. .| . +.+ .++|+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d---~----~~l--~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND---Y----EDI--AGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC---H----HHh--CCCCEE
Confidence 579997 9999999999998876 9999988643221111112221111 01122221 22 2 235 799999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEE-EEee
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL-IYSS 174 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~-V~~S 174 (393)
|.+++...- ......+.+..|+.-.+.+++.+.+...+.+ |.+|
T Consensus 71 Iit~g~p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 71 VITAGIPRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred EEecCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999986432 2234445677888888888888887764444 4443
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=50.67 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
...+|+|+|+|. |.+|+++++.|.+.|++|++.++.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 355689999995 899999999999999999987654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.031 Score=52.92 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHh--h
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFA--E 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~ 122 (393)
...+++|||.||+|.+|++.++-+...| ..|+++.. ....+..+ .+ +. -...|..+++-+++..+ .
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s--~e~~~l~k---~l-----GA-d~vvdy~~~~~~e~~kk~~~ 223 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS--KEKLELVK---KL-----GA-DEVVDYKDENVVELIKKYTG 223 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc--cchHHHHH---Hc-----CC-cEeecCCCHHHHHHHHhhcC
Confidence 4556899999999999999999999999 55555432 22222222 22 11 12246666554444443 3
Q ss_pred CCCcEEEEccccc
Q 016208 123 NAFDAVMHFAAVA 135 (393)
Q Consensus 123 ~~~d~Vi~~A~~~ 135 (393)
.++|+|++|+|..
T Consensus 224 ~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 224 KGVDVVLDCVGGS 236 (347)
T ss_pred CCccEEEECCCCC
Confidence 4799999999864
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.053 Score=52.38 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=67.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|+| .|.+|..+++.|...|. ++++++...-.. ....+.+.++.+ .-+++.+..
T Consensus 42 ~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np-~v~i~~~~~ 119 (392)
T PRK07878 42 NARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINP-LVNVRLHEF 119 (392)
T ss_pred cCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCC-CcEEEEEec
Confidence 36999999 69999999999999986 566665321000 011122223221 123444555
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
.+. .+...+++ .++|+||.+... ...-..+-++|.+.++ .+|+.+..+.+|
T Consensus 120 ~i~-~~~~~~~~--~~~D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~-p~v~~~~~g~~G 170 (392)
T PRK07878 120 RLD-PSNAVELF--SQYDLILDGTDN-----------------FATRYLVNDAAVLAGK-PYVWGSIYRFEG 170 (392)
T ss_pred cCC-hhHHHHHH--hcCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 554 34556677 689999987531 2222345678888887 488887766665
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.029 Score=52.76 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=56.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-CCCe---EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLK-DSYR---VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
++|.|+||||++|+.|++.|.. ...+ +..+... +...... .+. ...+.+... +++ .+ .++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~-~saGk~~----~~~--~~~l~v~~~---~~~----~~--~~~ 69 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK-RSAGKTV----QFK--GREIIIQEA---KIN----SF--EGV 69 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc-ccCCCCe----eeC--CcceEEEeC---CHH----Hh--cCC
Confidence 6999999999999999999995 5666 4444321 1111111 000 112222222 232 23 478
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceee
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATY 179 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vy 179 (393)
|+||.+++.. ....+...+.+.|+ .+|=.||..-+
T Consensus 70 Divf~a~~~~------------------~s~~~~~~~~~~G~-~VID~Ss~fR~ 104 (347)
T PRK06728 70 DIAFFSAGGE------------------VSRQFVNQAVSSGA-IVIDNTSEYRM 104 (347)
T ss_pred CEEEECCChH------------------HHHHHHHHHHHCCC-EEEECchhhcC
Confidence 9999887531 23456666666676 67778886665
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.07 Score=47.41 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|.| .|.+|+++++.|...|. ++++++...-.. +...+.+.++.+ .-.++.+..
T Consensus 11 ~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP-~~~V~~~~~ 88 (231)
T cd00755 11 NAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP-ECEVDAVEE 88 (231)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC-CcEEEEeee
Confidence 36899999 69999999999999985 677765421111 111222233322 123444444
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
.+. ++.+.+++. .++|+||.+... ...-..+.+.|++.+++ +|...+
T Consensus 89 ~i~-~~~~~~l~~-~~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip-~I~s~g 135 (231)
T cd00755 89 FLT-PDNSEDLLG-GDPDFVVDAIDS-----------------IRAKVALIAYCRKRKIP-VISSMG 135 (231)
T ss_pred ecC-HhHHHHHhc-CCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCC-EEEEeC
Confidence 443 445555552 469999988632 22334577899988874 555433
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.12 Score=47.88 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred EEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCC-CccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 54 VTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQP-GQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 54 ItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
|+| .|.||++++..|+..+. ++..+++...........+....... ..+.+..+| .+.+ .++|+||-
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~--~daDivVi 70 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-------YSDC--KDADLVVI 70 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-------HHHH--CCCCEEEE
Confidence 467 59999999999988874 79999875544444444444432111 223333222 2445 79999999
Q ss_pred cccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEee
Q 016208 131 FAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSS 174 (393)
Q Consensus 131 ~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~S 174 (393)
+||...- ...+....++.|+.-.+.+.+.+.+++.+- +|.+|
T Consensus 71 tag~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 71 TAGAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 9997532 234567889999999999999998886443 44444
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.029 Score=54.01 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=54.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
||+|+| +|..|..+++.+.+.|++|++++......... -.-..+.+|..|.+.+.+++++.++|+|+.
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~-----------~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-----------VAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchhh-----------hCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 689999 69999999999999999999998743221100 011345678889999999997778999986
Q ss_pred ccc
Q 016208 131 FAA 133 (393)
Q Consensus 131 ~A~ 133 (393)
...
T Consensus 69 ~~e 71 (380)
T TIGR01142 69 EIE 71 (380)
T ss_pred ccC
Confidence 543
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.093 Score=47.63 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=63.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCc-------------------hhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNM-------------------GAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|+| .|.+|+++++.|...| .++++++...-... ...+.+.++ .+.+.+...
T Consensus 30 ~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I---NP~~~V~~i 105 (268)
T PRK15116 30 DAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI---NPECRVTVV 105 (268)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH---CCCcEEEEE
Confidence 37899999 6999999999999999 57777764311100 111222222 233333222
Q ss_pred -cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 109 -DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 109 -Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+..+++...+++. .++|+||.+... +..-..|.+.|++.+++ +|.++.
T Consensus 106 ~~~i~~e~~~~ll~-~~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~ip-~I~~gG 154 (268)
T PRK15116 106 DDFITPDNVAEYMS-AGFSYVIDAIDS-----------------VRPKAALIAYCRRNKIP-LVTTGG 154 (268)
T ss_pred ecccChhhHHHHhc-CCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCC-EEEECC
Confidence 2334556666662 379999988753 12233588899998874 665443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0095 Score=54.89 Aligned_cols=70 Identities=19% Similarity=0.057 Sum_probs=48.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
...++|+|+|. |.+|+.+++.|...|.+|++.+|..... +...+ .+... ...+++.+.+ .++|
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~----~~~~~-----~g~~~-----~~~~~l~~~l--~~aD 211 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADL----ARITE-----MGLIP-----FPLNKLEEKV--AEID 211 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHH-----CCCee-----ecHHHHHHHh--ccCC
Confidence 34589999995 9999999999999999999988753211 11111 12221 1245566777 7899
Q ss_pred EEEEccc
Q 016208 127 AVMHFAA 133 (393)
Q Consensus 127 ~Vi~~A~ 133 (393)
+||++..
T Consensus 212 iVint~P 218 (287)
T TIGR02853 212 IVINTIP 218 (287)
T ss_pred EEEECCC
Confidence 9999863
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.022 Score=52.64 Aligned_cols=35 Identities=34% Similarity=0.498 Sum_probs=31.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
+++|.|+| +|.+|..++..|...|++|+++++...
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 47899999 599999999999999999999987543
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.052 Score=49.26 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+.+|+|+||+|-+|+...+-..-+|++|+++.-. .++.+.+.+...-...+++..-|+ .+.+.+++- .++|
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg----~eK~~~l~~~lGfD~~idyk~~d~--~~~L~~a~P-~GID 221 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG----AEKCDFLTEELGFDAGIDYKAEDF--AQALKEACP-KGID 221 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC----HHHHHHHHHhcCCceeeecCcccH--HHHHHHHCC-CCeE
Confidence 446799999999999999988888899999997432 233344433211123344433332 344555554 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-C-CcEEEEeecceeecCC
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-K-VKTLIYSSTCATYGEP 182 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~-~~~~V~~SS~~vyg~~ 182 (393)
+.|.|.|-. +++++-.. + -.|++.++-.+.|..+
T Consensus 222 vyfeNVGg~----------------------v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 222 VYFENVGGE----------------------VLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred EEEEcCCch----------------------HHHHHHHhhccccceeeeeehhhcCCC
Confidence 999998742 33333221 1 2489999888888664
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.015 Score=53.16 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=46.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++++|+|+ |.+|++++..|.+.|++|++++|...+.....+.+.. ...+.....+ + ... .++|+|
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~----~~~~~~~~~~-----~--~~~--~~~Div 182 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQR----YGEIQAFSMD-----E--LPL--HRVDLI 182 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh----cCceEEechh-----h--hcc--cCccEE
Confidence 478999996 8999999999999999999988754332222222211 1112222111 1 112 479999
Q ss_pred EEccccc
Q 016208 129 MHFAAVA 135 (393)
Q Consensus 129 i~~A~~~ 135 (393)
|++.+..
T Consensus 183 Inatp~g 189 (270)
T TIGR00507 183 INATSAG 189 (270)
T ss_pred EECCCCC
Confidence 9999764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.051 Score=51.00 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=47.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccE-EEEcc-CCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQ-FIYAD-LGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~D-l~~~~~~~~~~~~~~~d 126 (393)
+.+|||+||+|.+|..+++.+...|.+|++++++.. ..+.++++ +++ ++..+ -.+...........++|
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~----~~~~~~~l-----Ga~~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KVAYLKKL-----GFDVAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc-----CCCEEEeccccccHHHHHHHhCCCCeE
Confidence 469999999999999999999999999998766332 22233332 222 22211 11222222223224799
Q ss_pred EEEEccc
Q 016208 127 AVMHFAA 133 (393)
Q Consensus 127 ~Vi~~A~ 133 (393)
+||++.|
T Consensus 210 vv~d~~G 216 (325)
T TIGR02825 210 CYFDNVG 216 (325)
T ss_pred EEEECCC
Confidence 9999876
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.013 Score=54.31 Aligned_cols=67 Identities=21% Similarity=0.155 Sum_probs=47.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++|+|+| .|.+|+.++..|...|.+|++++|.... .+.... .+..++ ..+++.+.+ .++|+|
T Consensus 152 g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~----~~~~~~-----~G~~~~-----~~~~l~~~l--~~aDiV 214 (296)
T PRK08306 152 GSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAH----LARITE-----MGLSPF-----HLSELAEEV--GKIDII 214 (296)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHH-----cCCeee-----cHHHHHHHh--CCCCEE
Confidence 47999999 5899999999999999999999885321 111111 122322 234566777 789999
Q ss_pred EEcc
Q 016208 129 MHFA 132 (393)
Q Consensus 129 i~~A 132 (393)
|+++
T Consensus 215 I~t~ 218 (296)
T PRK08306 215 FNTI 218 (296)
T ss_pred EECC
Confidence 9986
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.2 Score=46.16 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=60.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEE-EEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC--C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA--F 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 125 (393)
..||+|-|-||-+|+.+.+.|++.|++++ .+.. ..... . ...+....++.++. .. +
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp-~~~~~--------------~----v~G~~~y~sv~dlp--~~~~~ 66 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTP-GKGGT--------------T----VLGLPVFNTVAEAV--EATGA 66 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECC-CCCCC--------------e----EeCeeccCCHHHHh--hccCC
Confidence 36999999999999999999999888633 3322 10011 0 01333455566666 44 8
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~ 176 (393)
|.+|-+.. ...+..+++.|.+.|++.+|.+|+.
T Consensus 67 DlAvi~vp------------------~~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 67 NASVIYVP------------------PPFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred CEEEEEcC------------------HHHHHHHHHHHHHCCCCEEEEECCC
Confidence 98886653 2235577888888999988888874
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.063 Score=38.96 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=43.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
||+|.| +|++|..++..|.+.|.+|+++.+.+.-... .|-.-.+.+.+.+++.+++++.+
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-------------------~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDRLLPG-------------------FDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------SSHHHHHHHHHHHHHTTEEEEES
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------cCHHHHHHHHHHHHHCCCEEEeC
Confidence 688999 6999999999999999999999885543210 11111234556676677777765
Q ss_pred cc
Q 016208 131 FA 132 (393)
Q Consensus 131 ~A 132 (393)
..
T Consensus 61 ~~ 62 (80)
T PF00070_consen 61 TK 62 (80)
T ss_dssp EE
T ss_pred CE
Confidence 53
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.058 Score=49.82 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEe
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVD 80 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~ 80 (393)
-+|.|.||||+.|..|++.|..+.+ ++..+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~ 33 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIA 33 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEe
Confidence 4799999999999999999999853 666553
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.09 Score=50.74 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC-------C------------CCchhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------R------------GNMGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~------------~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|+| .|.+|.++++.|...|. ++++++... + +.....+.+.++.+. -+++.+.
T Consensus 37 ~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~-v~v~~~~ 114 (390)
T PRK07411 37 KAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY-CQVDLYE 114 (390)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC-CeEEEEe
Confidence 346999999 69999999999999985 566655321 1 001122233333221 3455565
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
..+.. +...+++ .++|+||.+... ...-..+-++|.+.++ .+|+.+..+.+|
T Consensus 115 ~~~~~-~~~~~~~--~~~D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~-p~v~~~~~g~~g 166 (390)
T PRK07411 115 TRLSS-ENALDIL--APYDVVVDGTDN-----------------FPTRYLVNDACVLLNK-PNVYGSIFRFEG 166 (390)
T ss_pred cccCH-HhHHHHH--hCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEEccCEE
Confidence 55543 4556667 689999988642 1122235577888886 477766655554
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.097 Score=49.47 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=30.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|||.|.| ||++|....--|.+.||+|++++...
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 7899999 89999999999999999999998743
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.072 Score=54.08 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=55.2
Q ss_pred cCCCCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH
Q 016208 40 KAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI 119 (393)
Q Consensus 40 ~~~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 119 (393)
+......+.+++|+|+| +|++|+.+++.+.+.|++|++++........ . -.-..+.++..|.+.+.++
T Consensus 13 ~~~~~~~~~~k~IgIIG-gGqlg~mla~aA~~lG~~Vi~ld~~~~apa~---~--------~AD~~~v~~~~D~~~l~~~ 80 (577)
T PLN02948 13 SVKPVHGVSETVVGVLG-GGQLGRMLCQAASQMGIKVKVLDPLEDCPAS---S--------VAARHVVGSFDDRAAVREF 80 (577)
T ss_pred CCccccCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCchh---h--------hCceeeeCCCCCHHHHHHH
Confidence 33344457778999999 5899999999999999999999764321110 0 0113455788999999888
Q ss_pred HhhCCCcEEEE
Q 016208 120 FAENAFDAVMH 130 (393)
Q Consensus 120 ~~~~~~d~Vi~ 130 (393)
. ..+|+|..
T Consensus 81 a--~~~dvIt~ 89 (577)
T PLN02948 81 A--KRCDVLTV 89 (577)
T ss_pred H--HHCCEEEE
Confidence 8 45888754
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=47.24 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=66.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhh-hhcCC----CCccEEEEccCCCHHHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQ-ELFPQ----PGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
++|.++| .|-.|..++..|++.||+|++.+|...+......... ..... -...+++..=+.|.+++.+.+ .+
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~--~g 77 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVL--FG 77 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH--hC
Confidence 4789999 8999999999999999999999987555222221100 00000 135667777777888888877 33
Q ss_pred Cc----------EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc
Q 016208 125 FD----------AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168 (393)
Q Consensus 125 ~d----------~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 168 (393)
.+ +||++..+. -..++.+.+.+++.|..
T Consensus 78 ~~g~~~~~~~G~i~IDmSTis----------------p~~a~~~a~~~~~~G~~ 115 (286)
T COG2084 78 ENGLLEGLKPGAIVIDMSTIS----------------PETARELAAALAAKGLE 115 (286)
T ss_pred ccchhhcCCCCCEEEECCCCC----------------HHHHHHHHHHHHhcCCc
Confidence 33 455554432 23467788888888763
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.023 Score=55.15 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++|+|+| +|-+|+.+++.|...|. +++++.|..... +.+.+.. +.. .....+++.+.+ ..+|
T Consensus 180 ~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra----~~La~~~---~~~-----~~~~~~~l~~~l--~~aD 244 (414)
T PRK13940 180 SSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKA----QKITSAF---RNA-----SAHYLSELPQLI--KKAD 244 (414)
T ss_pred cCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHH----HHHHHHh---cCC-----eEecHHHHHHHh--ccCC
Confidence 347999999 59999999999999995 788887753222 2221111 111 223345667777 7899
Q ss_pred EEEEcccccCc
Q 016208 127 AVMHFAAVAYV 137 (393)
Q Consensus 127 ~Vi~~A~~~~~ 137 (393)
+||++.+..++
T Consensus 245 iVI~aT~a~~~ 255 (414)
T PRK13940 245 IIIAAVNVLEY 255 (414)
T ss_pred EEEECcCCCCe
Confidence 99999986543
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=49.97 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=66.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCc-------------------hhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNM-------------------GAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|||+|+ |.+|..+++.|.-.|. .+++++...-... ...+.+.++.+. -.++++..+
T Consensus 21 s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~-V~i~~~~e~ 98 (425)
T cd01493 21 AHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD-VNGSAVEES 98 (425)
T ss_pred CeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC-CEEEEEecc
Confidence 58999995 5599999999999996 6777754311111 112223444322 334555555
Q ss_pred CCCHH-HHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 110 LGDAK-AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 110 l~~~~-~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
+.+.. ...+++ .++|+||-+-. . ......+.+.|.+.++ .+|+++|.+.||.
T Consensus 99 ~~~ll~~~~~f~--~~fdiVI~t~~---------~--------~~~~~~L~~~c~~~~i-PlI~~~s~G~~G~ 151 (425)
T cd01493 99 PEALLDNDPSFF--SQFTVVIATNL---------P--------ESTLLRLADVLWSANI-PLLYVRSYGLYGY 151 (425)
T ss_pred cchhhhhHHHHh--cCCCEEEECCC---------C--------HHHHHHHHHHHHHcCC-CEEEEecccCEEE
Confidence 44321 223455 67888874321 0 1123346788888887 5999999988873
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.025 Score=52.77 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=30.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.|+|.|.| +|.+|+++++.|.+.||+|++.+|.
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899998 7999999999999999999998874
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.13 Score=52.62 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=56.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++|+|+| -|-+|+.+++.|.++|+++++++.+.. ..+.+++ .+...+.||.++++.++++=- .++|.|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~----~v~~~~~-----~g~~v~~GDat~~~~L~~agi-~~A~~v 468 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKMRITVLERDIS----AVNLMRK-----YGYKVYYGDATQLELLRAAGA-EKAEAI 468 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHH----HHHHHHh-----CCCeEEEeeCCCHHHHHhcCC-ccCCEE
Confidence 36899999 799999999999999999999976432 2222222 478899999999999887632 578888
Q ss_pred EEcc
Q 016208 129 MHFA 132 (393)
Q Consensus 129 i~~A 132 (393)
|-+.
T Consensus 469 v~~~ 472 (601)
T PRK03659 469 VITC 472 (601)
T ss_pred EEEe
Confidence 7554
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.011 Score=50.40 Aligned_cols=71 Identities=24% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+...++|.|+| .|-||+.+++.|..-|.+|++++|......... . ..+ ...++.+++ ..
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~----~-----~~~--------~~~~l~ell--~~ 91 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD----E-----FGV--------EYVSLDELL--AQ 91 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH----H-----TTE--------EESSHHHHH--HH
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhcc----c-----ccc--------eeeehhhhc--ch
Confidence 345669999999 799999999999999999999988554221000 0 011 112345566 56
Q ss_pred CcEEEEccccc
Q 016208 125 FDAVMHFAAVA 135 (393)
Q Consensus 125 ~d~Vi~~A~~~ 135 (393)
+|+|+.+...+
T Consensus 92 aDiv~~~~plt 102 (178)
T PF02826_consen 92 ADIVSLHLPLT 102 (178)
T ss_dssp -SEEEE-SSSS
T ss_pred hhhhhhhhccc
Confidence 89998887643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.61 Score=42.52 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEe
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVD 80 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~ 80 (393)
|+||.|+|++|.+|+.+++.+.+. +.++.++.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~ 33 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAF 33 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 579999999999999999999864 78887754
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=46.83 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=26.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEe
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVD 80 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~ 80 (393)
||||.|+|. |.+|+.+++.|.+. +.++.++.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~ 32 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVI 32 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEE
Confidence 689999996 99999999999876 56776665
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.019 Score=52.92 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=47.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.++|+|+| +|..|++++..|...|. +|++++|...+.....+.+.... ....+... +++.+.+ .++|+
T Consensus 127 ~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~---~~~~~~~~-----~~~~~~~--~~aDi 195 (284)
T PRK12549 127 LERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF---PAARATAG-----SDLAAAL--AAADG 195 (284)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC---CCeEEEec-----cchHhhh--CCCCE
Confidence 37999999 58899999999999996 79998886443333333332211 12222221 2234445 67999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||++..
T Consensus 196 VInaTp 201 (284)
T PRK12549 196 LVHATP 201 (284)
T ss_pred EEECCc
Confidence 999954
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=49.75 Aligned_cols=32 Identities=28% Similarity=0.179 Sum_probs=29.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r 81 (393)
++|+|+|.+|.||+.+++.|.+. |++|+++++
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 69999999999999999999975 889999876
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.04 Score=52.80 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=52.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
..+|+|+|+ |-+|...++.|...|.+|++++|.... .+.+.... + ..+..+..+.+.+.+.+ .++|+|
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~----~~~l~~~~----g-~~v~~~~~~~~~l~~~l--~~aDvV 234 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDR----LRQLDAEF----G-GRIHTRYSNAYEIEDAV--KRADLL 234 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHH----HHHHHHhc----C-ceeEeccCCHHHHHHHH--ccCCEE
Confidence 467999985 999999999999999999998874322 11121111 1 12334556778888888 789999
Q ss_pred EEcccc
Q 016208 129 MHFAAV 134 (393)
Q Consensus 129 i~~A~~ 134 (393)
|+++..
T Consensus 235 I~a~~~ 240 (370)
T TIGR00518 235 IGAVLI 240 (370)
T ss_pred EEcccc
Confidence 998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.062 Score=50.14 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=50.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+..+++|.|.| .|-||+.+++.|...|.+|++.++..... .++..+ ...+++.+++ .++
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l--~~a 191 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFL--SQT 191 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHH--hcC
Confidence 45668999999 89999999999999999999998743221 111111 1345678888 789
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+|+.+...
T Consensus 192 Dvvv~~lPl 200 (312)
T PRK15469 192 RVLINLLPN 200 (312)
T ss_pred CEEEECCCC
Confidence 999988743
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.051 Score=49.64 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=46.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...+++|+|+|.++.+|+.++..|+.+|.+|+++.+.. ..+.+.+ ..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~--~~A 202 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYL--KDA 202 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHH--hhC
Confidence 35668999999999999999999999999999875421 1345556 689
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|+||.+.|..
T Consensus 203 DIVIsAvg~p 212 (286)
T PRK14175 203 DVIVSAVGKP 212 (286)
T ss_pred CEEEECCCCC
Confidence 9999988764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.025 Score=52.14 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN 86 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 86 (393)
.+++|.|+| .|.+|..++..|+..|++|+++++.....
T Consensus 4 ~~~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~~ 41 (286)
T PRK07819 4 AIQRVGVVG-AGQMGAGIAEVCARAGVDVLVFETTEELA 41 (286)
T ss_pred CccEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 456899999 59999999999999999999998865443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.022 Score=57.91 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=55.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
-+|+|.| .|-+|+++++.|.++|++|++++.+.. ..+.+++ .+...+.||.++++.++++-- +++|.|+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~----~~~~~~~-----~g~~~i~GD~~~~~~L~~a~i-~~a~~vi 486 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRT----RVDELRE-----RGIRAVLGNAANEEIMQLAHL-DCARWLL 486 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHH-----CCCeEEEcCCCCHHHHHhcCc-cccCEEE
Confidence 5899999 699999999999999999999976332 2222222 478999999999998887632 5788776
Q ss_pred Ec
Q 016208 130 HF 131 (393)
Q Consensus 130 ~~ 131 (393)
-+
T Consensus 487 v~ 488 (558)
T PRK10669 487 LT 488 (558)
T ss_pred EE
Confidence 44
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.015 Score=54.74 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
||+|.|+| .|.+|..++..|.+.|++|.+++|..
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 68999999 69999999999999999999998743
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.044 Score=50.36 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=29.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|+|.|+| .|.+|..++..|.+.|++|+++++.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 4799999 8999999999999999999999874
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.22 Score=45.67 Aligned_cols=107 Identities=22% Similarity=0.237 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|||.| .|.+|..+++.|...|. ++++++...-.. +...+.+.++.+. -.++.+.
T Consensus 18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~-V~V~~~~ 95 (286)
T cd01491 18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPY-VPVTVST 95 (286)
T ss_pred hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCC-CEEEEEe
Confidence 336999999 68999999999999996 577665421111 1112233343221 3344444
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE 181 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~ 181 (393)
.++ + .+.+ .++|+||.+... ...-..+-++|++.++ .+|...+.+.+|.
T Consensus 96 ~~~-~----~~~l--~~fdvVV~~~~~-----------------~~~~~~in~~c~~~~i-pfI~a~~~G~~G~ 144 (286)
T cd01491 96 GPL-T----TDEL--LKFQVVVLTDAS-----------------LEDQLKINEFCHSPGI-KFISADTRGLFGS 144 (286)
T ss_pred ccC-C----HHHH--hcCCEEEEecCC-----------------HHHHHHHHHHHHHcCC-EEEEEeccccEEE
Confidence 442 2 2345 578988877531 2223456688998887 6999988877763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.033 Score=52.39 Aligned_cols=79 Identities=24% Similarity=0.194 Sum_probs=48.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
..+|||+||+|.+|...++.+...|..++++..++.+. +.+.++..+ .-+.+...| =.+.+.++....++|+|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~----~~~~~lGAd-~vi~y~~~~--~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKL----ELLKELGAD-HVINYREED--FVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHH----HHHHhcCCC-EEEcCCccc--HHHHHHHHcCCCCceEE
Confidence 47999999999999999999999996666654322211 123332111 011111122 13344555544579999
Q ss_pred EEcccc
Q 016208 129 MHFAAV 134 (393)
Q Consensus 129 i~~A~~ 134 (393)
++..|-
T Consensus 216 ~D~vG~ 221 (326)
T COG0604 216 LDTVGG 221 (326)
T ss_pred EECCCH
Confidence 999874
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.013 Score=55.60 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=30.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
||+|.|+| +|.+|..++..|.+.|++|++++|.
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57899999 7999999999999999999999873
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.3 Score=42.40 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=50.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCC---CCCCc---------------hhhhhhhhhcCCCCccEEEEcc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL---SRGNM---------------GAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D 109 (393)
..+|+|.|+ |.+|+.++..|...|. ++++++.. ..... ...+.+.++.+. ..+..+..+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~-~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY-TEIEAYDEK 98 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC-CEEEEeeee
Confidence 378999995 8899999999999998 68888764 11000 011122222221 345555556
Q ss_pred CCCHHHHHHHHhhCCCcEEEEc
Q 016208 110 LGDAKAVNKIFAENAFDAVMHF 131 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~ 131 (393)
+. .+.+.+++ .++|+||.+
T Consensus 99 i~-~~~~~~~~--~~~DlVi~a 117 (200)
T TIGR02354 99 IT-EENIDKFF--KDADIVCEA 117 (200)
T ss_pred CC-HhHHHHHh--cCCCEEEEC
Confidence 64 45667777 789999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.019 Score=53.13 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=31.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
+++|.|+|+ |.+|..++..|++.|++|+++++...
T Consensus 1 ~~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 1 IEKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 368999995 99999999999999999999987543
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.13 Score=40.78 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=26.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHC-CCeEEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKD-SYRVTIV 79 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~-g~~V~~~ 79 (393)
||.|+|++|.+|..+++.|.+. ++++.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 5899999999999999999985 8888887
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.37 Score=43.96 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=58.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc-EE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD-AV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d-~V 128 (393)
.+|+|.|++|-+|+.+++.+.+.+.++++..-........ . + ++ .+..+......|.+++........+| ++
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~-~-~-~~----~g~~v~~~~~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGV-T-V-EV----CGVEVRLVGPSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccc-c-c-ee----ccceeeeecCccHHHHHHHhhccCCCEEE
Confidence 5999999999999999999999888887743211111100 0 0 00 11122122234555544333335799 89
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V 171 (393)
|....+ ..+...++.|.++|++-+|
T Consensus 85 IDFT~P------------------~a~~~~~~~~~~~g~~~Vv 109 (286)
T PLN02775 85 VDYTLP------------------DAVNDNAELYCKNGLPFVM 109 (286)
T ss_pred EECCCh------------------HHHHHHHHHHHHCCCCEEE
Confidence 877532 2355778889999985333
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=48.19 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=49.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH---HHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA---VNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~~~ 125 (393)
+.+|+|+|++|.+|..+++.+...|.+|+++++.... .+.+... +... ..|..+.+. +.+.....++
T Consensus 167 ~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~----~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 167 GETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDK----LERAKEL-----GADY-VIDYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHc-----CCCe-EEecCChHHHHHHHHHhCCCCC
Confidence 3689999999999999999999999999988664321 1222221 1111 124444433 3333333479
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+++++++.
T Consensus 237 d~~i~~~g~ 245 (342)
T cd08266 237 DVVVEHVGA 245 (342)
T ss_pred cEEEECCcH
Confidence 999999873
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.037 Score=51.19 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.++|.|+| .|.+|..++..|+..|++|+++++...
T Consensus 3 i~~I~ViG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 3 IKVIGVVG-SGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 46899999 699999999999999999999987543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.13 Score=50.95 Aligned_cols=37 Identities=11% Similarity=0.394 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
..+++|-++| .|-+|+.+++.|+++|++|.+.+|...
T Consensus 4 ~~~~~IG~IG-LG~MG~~mA~nL~~~G~~V~V~NRt~~ 40 (493)
T PLN02350 4 AALSRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 40 (493)
T ss_pred CCCCCEEEEe-eHHHHHHHHHHHHhCCCeEEEECCCHH
Confidence 4567899999 899999999999999999999988543
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.08 Score=49.12 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|++|.|+| .|.+|..+++.|++.|++|++.+|..
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 46899999 89999999999999999999988753
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.039 Score=53.78 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=49.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...++|+|+|+ |-+|..+++.|...| .+|++++|....... ....+ +...+ ..+++.+++ .++
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~---la~~~-----g~~~i-----~~~~l~~~l--~~a 241 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAED---LAKEL-----GGEAV-----KFEDLEEYL--AEA 241 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH---HHHHc-----CCeEe-----eHHHHHHHH--hhC
Confidence 34479999995 999999999999999 789998875422211 11111 11112 234666777 689
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|+||.+.+..
T Consensus 242 DvVi~aT~s~ 251 (417)
T TIGR01035 242 DIVISSTGAP 251 (417)
T ss_pred CEEEECCCCC
Confidence 9999987644
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.032 Score=54.39 Aligned_cols=34 Identities=32% Similarity=0.296 Sum_probs=30.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
|+|.|+| .|++|..++..|.+.|++|+++++...
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 5799999 799999999999999999999987543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.17 Score=50.04 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=51.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEE------ccCCCHHHHHHHHhh
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY------ADLGDAKAVNKIFAE 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~Dl~~~~~~~~~~~~ 122 (393)
|+||||.| .|.+|..+++.+.+.|++|++++.......-.... .+-.++. -+..|.+.+.+++.+
T Consensus 2 ~k~iLi~g-~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~--------ad~~~~~~~~~~~~~y~d~~~l~~~a~~ 72 (451)
T PRK08591 2 FDKILIAN-RGEIALRIIRACKELGIKTVAVHSTADRDALHVQL--------ADEAVCIGPAPSKKSYLNIPAIISAAEI 72 (451)
T ss_pred cceEEEEC-CCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhH--------CCEEEEeCCCCcccccCCHHHHHHHHHH
Confidence 68999998 79999999999999999999985432111100000 1111111 145577888888877
Q ss_pred CCCcEEEEccc
Q 016208 123 NAFDAVMHFAA 133 (393)
Q Consensus 123 ~~~d~Vi~~A~ 133 (393)
.++|+|+-..+
T Consensus 73 ~~id~I~p~~~ 83 (451)
T PRK08591 73 TGADAIHPGYG 83 (451)
T ss_pred hCCCEEEECCC
Confidence 89999987654
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.021 Score=53.80 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.+|+|.|+| .|-+|..++..|.+.|++|++++|..
T Consensus 3 ~~m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 3 HGMRVAVLG-AGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 367999998 79999999999999999999998843
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.041 Score=51.44 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++|+|+|+ |-+|..+++.|...| .+|++++|......... .++ +.. ..+.+++.+.+ ..+|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la---~~~-----g~~-----~~~~~~~~~~l--~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELA---KEL-----GGN-----AVPLDELLELL--NEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH---HHc-----CCe-----EEeHHHHHHHH--hcCC
Confidence 4589999995 999999999999876 67888877432222111 111 112 22334566767 6799
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+||.+.+..
T Consensus 241 vVi~at~~~ 249 (311)
T cd05213 241 VVISATGAP 249 (311)
T ss_pred EEEECCCCC
Confidence 999998753
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.061 Score=49.18 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r 81 (393)
|.++||.|+| .|.||+.+++.|.+. ++++.++..
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~d 39 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAV 39 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5568999999 799999999999873 788876543
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.2 Score=53.23 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCC-------CC------------CCchhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL-------SR------------GNMGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.| .|.+|+.++..|...|. ++++++-. .+ +.....+.+.++.+ .-+++.+.
T Consensus 331 ~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP-~v~I~~~~ 408 (989)
T PRK14852 331 LRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNP-FLDIRSFP 408 (989)
T ss_pred hcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCC-CCeEEEEe
Confidence 347999999 69999999999999985 45554421 11 01112223333322 13455565
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT 178 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v 178 (393)
..+ +.+.+.+++ .++|+||.+.-... +..-..+.+.|.+.+++ +|+.++.+.
T Consensus 409 ~~I-~~en~~~fl--~~~DiVVDa~D~~~---------------~~~rr~l~~~c~~~~IP-~I~ag~~G~ 460 (989)
T PRK14852 409 EGV-AAETIDAFL--KDVDLLVDGIDFFA---------------LDIRRRLFNRALELGIP-VITAGPLGY 460 (989)
T ss_pred cCC-CHHHHHHHh--hCCCEEEECCCCcc---------------HHHHHHHHHHHHHcCCC-EEEeecccc
Confidence 555 556778888 78999998763211 22234667778888884 777766443
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.16 Score=49.28 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=65.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC------eEEEEeCCCCCCc-------------------hhhhhhhhhcCCCCccEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLSRGNM-------------------GAVKVLQELFPQPGQLQF 105 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~------~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 105 (393)
+|||+| .|.+|..+++.|...|. ++++++...-... .+.+.+.++.+ .-+++.
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp-~v~I~a 78 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNP-DLKITA 78 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCC-CCEEEE
Confidence 589999 69999999999999987 7887765321111 01122223221 134444
Q ss_pred EEccCCCH-HH-H-HHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 106 IYADLGDA-KA-V-NKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 106 ~~~Dl~~~-~~-~-~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+...+... +. + .+.+ .++|+||++.- |+..-..+-+.|...++ -+|..++.+.+|
T Consensus 79 ~~~~v~~~~~~~~~~~f~--~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~G 136 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW--EKLDGVANALD-----------------NVDARMYVDRRCVYYRK-PLLESGTLGTKG 136 (435)
T ss_pred EecccChhhhhhhhHHHh--cCCCEEEECCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeccccee
Confidence 54444321 11 1 2344 57888887642 34445567788888887 488887776665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.22 Score=49.05 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc-------cCCCHHHHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA-------DLGDAKAVNKIF 120 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~~~~~~~~~~ 120 (393)
.|+||||.| .|.++..+++.+.+.|++|+++........-.... .. +.+.. +..|.+.+.+++
T Consensus 3 ~~k~ili~~-~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~--------ad-~~~~~~~~~~~~~y~~~~~l~~~~ 72 (445)
T PRK08462 3 EIKRILIAN-RGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKY--------AD-AKICIGGAKSSESYLNIPAIISAA 72 (445)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhh--------CC-EEEEeCCCchhcccCCHHHHHHHH
Confidence 478999999 69999999999999999999986433221100000 01 11212 667788999999
Q ss_pred hhCCCcEEEEccc
Q 016208 121 AENAFDAVMHFAA 133 (393)
Q Consensus 121 ~~~~~d~Vi~~A~ 133 (393)
++.++|+|+-..+
T Consensus 73 ~~~~~D~i~pg~g 85 (445)
T PRK08462 73 EIFEADAIFPGYG 85 (445)
T ss_pred HHcCCCEEEECCC
Confidence 9999999998765
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.022 Score=42.89 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC---CeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDS---YRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||.|+| +|.+|.+|++.|++.| ++|... +|...+.. +...+ -++.+...| . .+++ ..+|
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~---~~~~~-----~~~~~~~~~---~---~~~~--~~ad 63 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA---ELAKE-----YGVQATADD---N---EEAA--QEAD 63 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH---HHHHH-----CTTEEESEE---H---HHHH--HHTS
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH---HHHHh-----hccccccCC---h---HHhh--ccCC
Confidence 688886 8999999999999999 999965 55332222 21122 123333222 2 3445 4689
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||.+.-.
T Consensus 64 vvilav~p 71 (96)
T PF03807_consen 64 VVILAVKP 71 (96)
T ss_dssp EEEE-S-G
T ss_pred EEEEEECH
Confidence 99988643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.1 Score=48.16 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|+ |..+++++..|...|. +|++++|.....+...+..+.+.. .........++.+.+.+.+.+ .++|
T Consensus 123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~-~~~~~~~~~~~~~~~~l~~~~--~~aD 198 (288)
T PRK12749 123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-NTDCVVTVTDLADQQAFAEAL--ASAD 198 (288)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhh-ccCceEEEechhhhhhhhhhc--ccCC
Confidence 3378999995 6669999999999985 899988854312222222222211 111111112222233344455 6799
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+....
T Consensus 199 ivINaTp~G 207 (288)
T PRK12749 199 ILTNGTKVG 207 (288)
T ss_pred EEEECCCCC
Confidence 999987543
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.051 Score=50.79 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=31.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
+++|.|+| .|.+|..++..|++.|++|+++++...
T Consensus 4 ~~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 4 IQNLAIIG-AGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 47899999 699999999999999999999987543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=47.68 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=30.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|.|+| .|.+|+.+++.|++.|++|.+.+|..
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4899999 89999999999999999999998853
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.17 Score=47.35 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=51.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+.+|+|+|+ |.+|..-++.+...|.+|++++|+..+.+.. +++ +.+.+...- +.+.....- ..+|
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a----~~l-----GAd~~i~~~-~~~~~~~~~--~~~d 231 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELA----KKL-----GADHVINSS-DSDALEAVK--EIAD 231 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHH----HHh-----CCcEEEEcC-CchhhHHhH--hhCc
Confidence 34579999996 5999999999999999999999865443322 222 333322222 555555554 2399
Q ss_pred EEEEccc
Q 016208 127 AVMHFAA 133 (393)
Q Consensus 127 ~Vi~~A~ 133 (393)
+||.+++
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9999987
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.05 Score=53.20 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...++|+|+| +|-+|..+++.|...|. +|++++|........ ...+ +. +..+.+++.+.+ .++
T Consensus 180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l---a~~~-----g~-----~~~~~~~~~~~l--~~a 243 (423)
T PRK00045 180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEEL---AEEF-----GG-----EAIPLDELPEAL--AEA 243 (423)
T ss_pred ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH---HHHc-----CC-----cEeeHHHHHHHh--ccC
Confidence 3458999999 59999999999999997 788887743222111 1111 11 222345566777 689
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|+||.+.+..
T Consensus 244 DvVI~aT~s~ 253 (423)
T PRK00045 244 DIVISSTGAP 253 (423)
T ss_pred CEEEECCCCC
Confidence 9999998654
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.055 Score=52.92 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=49.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||+|+| +|..+..|++.+.+.|+.+.++..... ..... .....++..|..|.+.+.+++++.++|.||
T Consensus 1 ~kiliiG-~G~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~~~~~d~~~l~~~~~~~~id~vi 69 (423)
T TIGR00877 1 MKVLVIG-NGGREHALAWKLAQSPLVKYVYVAPGN--AGTAR--------LAKNKNVAISITDIEALVEFAKKKKIDLAV 69 (423)
T ss_pred CEEEEEC-CChHHHHHHHHHHhCCCccEEEEECCC--HHHhh--------hcccccccCCCCCHHHHHHHHHHhCCCEEE
Confidence 6899999 577799999999998876555532221 11100 012244557999999999999888999988
Q ss_pred Ec
Q 016208 130 HF 131 (393)
Q Consensus 130 ~~ 131 (393)
-.
T Consensus 70 ~~ 71 (423)
T TIGR00877 70 IG 71 (423)
T ss_pred EC
Confidence 43
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.35 Score=42.15 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=60.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+++|+|+| .|-+|..-++.|++.|.+|++++.... .....+.+ ..++.++..+.... .+ .+++
T Consensus 7 l~gk~vlVvG-gG~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~~l~~----~~~i~~~~~~~~~~-----dl--~~~~ 71 (205)
T TIGR01470 7 LEGRAVLVVG-GGDVALRKARLLLKAGAQLRVIAEELE---SELTLLAE----QGGITWLARCFDAD-----IL--EGAF 71 (205)
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHH----cCCEEEEeCCCCHH-----Hh--CCcE
Confidence 3458999999 599999999999999999999864221 11122211 24788888887522 24 6788
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
.||-+.+. + +. ...+.+.|++.++ +|.+.
T Consensus 72 lVi~at~d---------~----~l----n~~i~~~a~~~~i--lvn~~ 100 (205)
T TIGR01470 72 LVIAATDD---------E----EL----NRRVAHAARARGV--PVNVV 100 (205)
T ss_pred EEEECCCC---------H----HH----HHHHHHHHHHcCC--EEEEC
Confidence 88744321 1 01 2357788877765 44433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.043 Score=51.32 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=56.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH-HHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK-AVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~d 126 (393)
+++||+.| +||+.+..+..|.+++ .+|++.+|.-.+.+.. + . ..++..+..|+.+.+ .+...+ ...|
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~---~----~-~~~~~av~ldv~~~~~~L~~~v--~~~D 70 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAEAL---V----K-GINIKAVSLDVADEELALRKEV--KPLD 70 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHHHH---h----c-CCCccceEEEccchHHHHHhhh--cccc
Confidence 57899999 7999999999999875 5788766543332211 1 1 245889999999998 788887 7889
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
.|+-+--.
T Consensus 71 ~viSLlP~ 78 (445)
T KOG0172|consen 71 LVISLLPY 78 (445)
T ss_pred eeeeeccc
Confidence 99877643
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.062 Score=50.96 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=51.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+..+++|.|+| .|-||+.+++.|...|.+|++++|..+........++ ...+..+........++.+++ ..+
T Consensus 156 ~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~ell--~~a 227 (347)
T PLN02928 156 TLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP-----NGDVDDLVDEKGGHEDIYEFA--GEA 227 (347)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc-----cccccccccccCcccCHHHHH--hhC
Confidence 46679999999 7999999999999999999999875322110000000 001010000111345677888 789
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+|+.+...
T Consensus 228 DiVvl~lPl 236 (347)
T PLN02928 228 DIVVLCCTL 236 (347)
T ss_pred CEEEECCCC
Confidence 999988754
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.27 Score=50.79 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCC-------CCCC------------chhhhhhhhhcCCCCccEEEE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL-------SRGN------------MGAVKVLQELFPQPGQLQFIY 107 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~-------~~~~------------~~~~~~~~~~~~~~~~~~~~~ 107 (393)
...+|+|.| .|.+|++++..|...|. ++++++.. .+.. +...+.+.++.+ ..+++.+.
T Consensus 42 ~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP-~~~I~~~~ 119 (679)
T PRK14851 42 AEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINP-FLEITPFP 119 (679)
T ss_pred hcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCC-CCeEEEEe
Confidence 347999999 79999999999999985 45554421 1110 112222333322 24566777
Q ss_pred ccCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 108 ~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
..+. .+.+.+++ .++|+||.+.-... +..-..+.+.|.+.+++ +|+.+.
T Consensus 120 ~~i~-~~n~~~~l--~~~DvVid~~D~~~---------------~~~r~~l~~~c~~~~iP-~i~~g~ 168 (679)
T PRK14851 120 AGIN-ADNMDAFL--DGVDVVLDGLDFFQ---------------FEIRRTLFNMAREKGIP-VITAGP 168 (679)
T ss_pred cCCC-hHHHHHHH--hCCCEEEECCCCCc---------------HHHHHHHHHHHHHCCCC-EEEeec
Confidence 7774 56677888 78999997763210 12233567788888885 666553
|
|
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.16 Score=38.42 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=45.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||||+| +|.=-.+|+..|.+.. .+|++.--+. ... .-...+..|..|.+.+.++.++.++|.
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aPGN~-G~~-------------~~~~~~~~~~~d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAPGNP-GTA-------------ELGKNVPIDITDPEELADFAKENKIDL 65 (100)
T ss_dssp EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE--T-TGG-------------GTSEEE-S-TT-HHHHHHHHHHTTESE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeCCCH-HHH-------------hhceecCCCCCCHHHHHHHHHHcCCCE
Confidence 7999999 7877888999998764 4677653211 111 122345569999999999999999999
Q ss_pred EE
Q 016208 128 VM 129 (393)
Q Consensus 128 Vi 129 (393)
||
T Consensus 66 vv 67 (100)
T PF02844_consen 66 VV 67 (100)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.09 Score=49.74 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=27.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDN 81 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r 81 (393)
|+||.|.|. |.||+.+++.+.+. +.++.++..
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEEC
Confidence 579999998 99999999998865 678888764
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.05 Score=51.21 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=47.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+..+|+|.|+| .|.||+.+++.|...|++|++.+|...... ..+. -..++.+++ .+
T Consensus 142 ~~l~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~-------------~~~~-------~~~~l~ell--~~ 198 (330)
T PRK12480 142 KPVKNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDL-------------DFLT-------YKDSVKEAI--KD 198 (330)
T ss_pred cccCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhh-------------hhhh-------ccCCHHHHH--hc
Confidence 356778999999 799999999999999999999987532110 0000 112356677 78
Q ss_pred CcEEEEccc
Q 016208 125 FDAVMHFAA 133 (393)
Q Consensus 125 ~d~Vi~~A~ 133 (393)
+|+|+.+..
T Consensus 199 aDiVil~lP 207 (330)
T PRK12480 199 ADIISLHVP 207 (330)
T ss_pred CCEEEEeCC
Confidence 898887663
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.068 Score=50.54 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=54.4
Q ss_pred cEEEEEcCCChhHHHHHHHHH-HCCCe---EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLL-KDSYR---VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~-~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
++|.|+||||.+|+.+++.|. ++.+. ++.++.. +.... .... .+.....-++.+. ..+ .++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~-~s~g~------~~~f--~~~~~~v~~~~~~----~~~--~~v 65 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS-QLGQA------APSF--GGTTGTLQDAFDI----DAL--KAL 65 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch-hhCCC------cCCC--CCCcceEEcCccc----ccc--cCC
Confidence 479999999999999999999 66654 3333221 11110 0000 1111122233222 123 589
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecce
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCA 177 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~ 177 (393)
|++|.+++.. .+..+...+.++|.+ .+|=-||..
T Consensus 66 Divffa~g~~------------------~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 66 DIIITCQGGD------------------YTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred CEEEEcCCHH------------------HHHHHHHHHHhCCCCeEEEECChhh
Confidence 9999998632 255677777788853 455566543
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.19 Score=50.01 Aligned_cols=74 Identities=23% Similarity=0.121 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCch-hhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG-AVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.+++|+|+|+ |.+|..+++.|.++|++|+++++....... ..+.+++ .++.++.++-.. .. .++|
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~-----~gv~~~~~~~~~------~~--~~~D 80 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEA-----LGATVRLGPGPT------LP--EDTD 80 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHH-----cCCEEEECCCcc------cc--CCCC
Confidence 4579999995 999999999999999999998764322111 1122222 367777665332 22 5799
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
.||...|+.
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 999888864
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.088 Score=49.49 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=45.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC---HHHHHHHHhhC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD---AKAVNKIFAEN 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~ 123 (393)
||||||||+.+-+ .+++.|.+. |++|++++....... . .. ....+..-+..+ .+.+.+++++.
T Consensus 1 ~~~vLv~g~~~~~--~~~~~l~~~~~g~~vi~~d~~~~~~~-~-~~--------~d~~~~~p~~~~~~~~~~l~~~~~~~ 68 (326)
T PRK12767 1 MMNILVTSAGRRV--QLVKALKKSLLKGRVIGADISELAPA-L-YF--------ADKFYVVPKVTDPNYIDRLLDICKKE 68 (326)
T ss_pred CceEEEecCCccH--HHHHHHHHhccCCEEEEECCCCcchh-h-Hh--------ccCcEecCCCCChhHHHHHHHHHHHh
Confidence 7999999987665 899999998 499999876422211 1 00 111111112223 36677778778
Q ss_pred CCcEEEEc
Q 016208 124 AFDAVMHF 131 (393)
Q Consensus 124 ~~d~Vi~~ 131 (393)
++|+|+-+
T Consensus 69 ~id~ii~~ 76 (326)
T PRK12767 69 KIDLLIPL 76 (326)
T ss_pred CCCEEEEC
Confidence 99998854
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.54 Score=44.81 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=49.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC----------------
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL---------------- 110 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---------------- 110 (393)
|++|.|+|+||-||..-+..+.+. .++|+++.- ....+.+.+...+.. +..- ...|-
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa-~~n~~~l~~q~~~f~---p~~v-~i~~~~~~~~l~~~l~~~~~~ 75 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSA-GKNVELLAEQAREFR---PKYV-VVADEEAAKELKEALAAAGIE 75 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHhC---CCEE-EEcCHHHHHHHHHhhccCCce
Confidence 689999999999999988888664 578888863 222222223222221 1111 11111
Q ss_pred --CCHHHHHHHHhhCCCcEEEEcccc
Q 016208 111 --GDAKAVNKIFAENAFDAVMHFAAV 134 (393)
Q Consensus 111 --~~~~~~~~~~~~~~~d~Vi~~A~~ 134 (393)
...+.+.+++...++|+|+....-
T Consensus 76 v~~G~~~~~~l~~~~~vD~Vv~Ai~G 101 (385)
T PRK05447 76 VLAGEEGLCELAALPEADVVVAAIVG 101 (385)
T ss_pred EEEChhHHHHHhcCCCCCEEEEeCcC
Confidence 124566677765678999988753
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.033 Score=47.75 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=26.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|||.|.| .|++|..++..|.+.|++|++++..
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCC
Confidence 7999998 8999999999999999999998763
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.065 Score=49.33 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=47.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.++++|+| +|..|++++..|.+.|. +|+++.|...+...+.+.+.. ...+ .. +...+++...+ ..+|+
T Consensus 125 ~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~----~~~~--~~--~~~~~~~~~~~--~~~Di 193 (282)
T TIGR01809 125 GFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQ----VGVI--TR--LEGDSGGLAIE--KAAEV 193 (282)
T ss_pred CceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhh----cCcc--ee--ccchhhhhhcc--cCCCE
Confidence 47899999 59999999999999996 799988854333222222111 0111 11 11123334445 67999
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
|||+....
T Consensus 194 VInaTp~g 201 (282)
T TIGR01809 194 LVSTVPAD 201 (282)
T ss_pred EEECCCCC
Confidence 99998654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 393 | ||||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 6e-63 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-61 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 2e-61 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-61 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 3e-61 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-61 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 6e-61 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 6e-61 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-61 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-60 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 2e-60 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 2e-60 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 4e-60 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 6e-60 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 1e-58 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 4e-56 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 8e-55 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 3e-30 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 4e-23 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 3e-22 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 5e-22 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 1e-21 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 4e-20 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 2e-19 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-19 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-19 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 3e-19 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 3e-19 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 9e-19 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 2e-18 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 4e-18 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 4e-18 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 2e-17 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 4e-16 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 1e-15 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 2e-15 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 2e-15 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 2e-15 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-15 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 5e-14 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 2e-13 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 3e-12 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-12 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 5e-12 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 5e-11 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 4e-10 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 2e-09 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 3e-09 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 1e-08 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 4e-06 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 4e-06 | ||
| 3a9w_A | 317 | Crystal Structure Of L-Threonine Bound L-Threonine | 1e-05 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 1e-05 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 1e-05 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 1e-05 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 1e-05 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 1e-05 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 3e-05 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 4e-05 | ||
| 2hrz_A | 342 | The Crystal Structure Of The Nucleoside-diphosphate | 5e-05 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 7e-05 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 7e-05 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-04 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 1e-04 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-04 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 2e-04 | ||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 2e-04 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 5e-04 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 9e-04 |
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar Epimerase From Agrobacterium Tumefaciens Length = 342 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 457 bits (1179), Expect = e-162
Identities = 135/340 (39%), Positives = 183/340 (53%), Gaps = 18/340 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+ GGAGYIGSHA +L+ + V +VDNL G+ A+ +F DL
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI---------TEGAKFYNGDLR 54
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + +F + +AVMHFAA + VG S +PL+YY+N L +LE M KV I
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI 114
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+SST ATYGE D ITE T P N YG+ K E ++ +S+ +N+ I RYFNV G
Sbjct: 115 FSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAG 174
Query: 232 SDPEGRLGEAPHPE--LREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+ P G +GE PE L I A G + + G DYNT DGTC+RDYI V
Sbjct: 175 ATPNGIIGEDHRPETHL-----IPLVL-QVALGQREKIMMFGDDYNTPDGTCIRDYIHVE 228
Query: 290 DLVDAHVLAL-ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYA 348
DLV AH L L G+ YN+G G G SVKE V+A ++ T I E RR GD A
Sbjct: 229 DLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPA 288
Query: 349 EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
+ + K +++L W R+ +++ ++ AW W + NGY
Sbjct: 289 RLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGY 328
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 429 bits (1106), Expect = e-150
Identities = 126/387 (32%), Positives = 187/387 (48%), Gaps = 49/387 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVL--------------QEL 96
VLV GGAGYIGSH LL+D+ + V IVD+L + + V +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 97 FPQPGQLQFIYADLGDAKAVNKIFAENA-FDAVMHFAAVAYVGESTLEPLRYYHNITSNT 155
D+ + +N +F + DAV+H A VGES +PL+YY N
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 156 LVILEAMAAHKVKTLIYSSTCATYGEP-------DKMPITESTPQKPINPYGKAKKMSED 208
L +L+AM HK +I+SS+ A +G P + PI + + P +PYG++K ++E
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREH---------------GRIS 253
+I D ++ + + LRYFN G+ +G +GE H +
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGS--THLIPIILGRVMSDIAPDQR- 241
Query: 254 GACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLAL-------ANAKPGK 306
+ I GTDY T DGTCVRDY+ V DL AH+LAL N K
Sbjct: 242 -LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY 300
Query: 307 VGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTAR 366
++N+GT +G SV+E +E +K TG I V RR GD A + + K R+ L W +
Sbjct: 301 FSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
Query: 367 FTDLQGSLQIAWRWQKTHINGYGSRNN 393
+ L+ ++ +W++Q+TH NGY S+ N
Sbjct: 361 YDTLEAIMETSWKFQRTHPNGYASQEN 387
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 378 bits (974), Expect = e-131
Identities = 130/349 (37%), Positives = 186/349 (53%), Gaps = 28/349 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAGYIGSH A+ LL Y V I DNL A+ ++++ + F D+
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKT--PAFHETDVS 65
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D +A+ +IF + A +HFAA+ VGES +P+ YY N + L +L M VK ++
Sbjct: 66 DERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIV 125
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNVI 230
+SS+ YG P++ PI E+ P NPYG+ K M+E I+ D + V LRYFN +
Sbjct: 126 FSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPV 185
Query: 231 GSDPEGRLGEAPH-------PELREHGRISGACFDA--ARGIIPGLKIRGTDYNTADGTC 281
G+ G +GE P P + A A G + L++ G+DY T DGT
Sbjct: 186 GAHESGLIGEDPAGIPNNLMP------------YVAQVAVGKLEKLRVFGSDYPTPDGTG 233
Query: 282 VRDYIDVTDLVDAHVLAL--ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
VRDYI V DL H+ AL + N+GTG+G SV E V A +KA+G + E
Sbjct: 234 VRDYIHVVDLARGHIAALDALERRDA-SLTVNLGTGRGYSVLEVVRAFEKASGRAVPYEL 292
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
++RRPGD AE Y++P+ + + W A DL+ WRWQ+ + G+
Sbjct: 293 VARRPGDVAECYANPAAAAETIGWKAER-DLERMCADHWRWQENNPRGF 340
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 374 bits (963), Expect = e-129
Identities = 139/351 (39%), Positives = 186/351 (52%), Gaps = 29/351 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKH--PTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTP-QKPINPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNV 229
+SS+ YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH-------PELREHGRISGACFDA--ARGIIPGLKIRGTDYNTADGT 280
+G+ P G +GE P P + A A G L I G DY T DGT
Sbjct: 181 VGAHPSGDMGEDPQGIPNNLMP------------YIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 281 CVRDYIDVTDLVDAHVLAL--ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE 338
VRDYI V DL D HV+A+ KPG V IYN+G G G SV + V A KA G +
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYH 287
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYG 389
+ RR GD ++D SK ELNW L Q W WQ H GY
Sbjct: 288 FAPRREGDLPAYWADASKADRELNWRVTR-TLDEMAQDTWHWQSRHPQGYP 337
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 373 bits (959), Expect = e-129
Identities = 80/335 (23%), Positives = 133/335 (39%), Gaps = 43/335 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGGAG +GS+ L + + ++DN + G + P L I +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL-------PPVAGLSVIEGSVT 75
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
DA + + F V+H AA + ++ + +A + VK L+
Sbjct: 76 DAGLLERAFDSFKPTHVVHSAAAYKDPDD---WAEDAATNVQGSINVAKAASKAGVKRLL 132
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
T YG P +PI +P P YG +K E ++ ++ V+ LR NV G
Sbjct: 133 NFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMS----DVPVVSLRLANVTG 188
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
P +G P + + G K +D VRD++D++D
Sbjct: 189 --PRLAIGPIP------------TFYKRLKA---GQKCFCSD-------TVRDFLDMSDF 224
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--VEYLSRRPGDYAE 349
+ L+L +P G++NV TG+G S+KE + G + V ++ D
Sbjct: 225 LAIADLSLQEGRPT--GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPS 282
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
V DPSK E W A+ D + ++ W +
Sbjct: 283 VVLDPSKTETEFGWKAKV-DFKDTITGQLAWYDKY 316
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 367 bits (945), Expect = e-126
Identities = 137/359 (38%), Positives = 197/359 (54%), Gaps = 35/359 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG------AVKVLQELFPQPGQLQF 105
VLVTGGAGYIGSH L LL+ Y ++DN G +++ +QEL + ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS--VEF 62
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
D+ D A+ ++F + +F AV+HFA + VGES +PL YY + T+ +LE M AH
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTP-QKPINPYGKAKKMSEDIIIDFSK-TTNMAVMI 223
VK L++SS+ YG P +P+ E+ P NPYGK+K E++I D + ++
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVL 182
Query: 224 LRYFNVIGSDPEGRLGEAPH-------PELREHGRISGACFDA--ARGIIPGLKIRGTDY 274
LRYFN G+ G +GE P P + + A G L + G DY
Sbjct: 183 LRYFNPTGAHASGCIGEDPQGIPNNLMP------------YVSQVAIGRREALNVFGNDY 230
Query: 275 NTADGTCVRDYIDVTDLVDAHVLAL--ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG 332
+T DGT VRDYI V DL H+ AL + G IYN+GTG G SV + V+A +KA+G
Sbjct: 231 DTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCG-CRIYNLGTGTGYSVLQMVQAMEKASG 289
Query: 333 VNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
I + ++RR GD A Y++PS ++EL WTA L + WRWQK + +G+G++
Sbjct: 290 KKIPYKVVARREGDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWRWQKQNPSGFGTQ 347
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-124
Identities = 102/336 (30%), Positives = 156/336 (46%), Gaps = 29/336 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGAG+IGSH LL V ++DNL+ G V P + F DL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---------PKGVPFFRVDLR 53
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + V + F E V H AA A V S +P+ + L +LEA + V+ L+
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113
Query: 172 YSST-CATYGE-PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
++ST A YGE P+ E+ P +P +PY +K E + + ++ + + LRY NV
Sbjct: 114 FASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNV 173
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
G + PH E G ++ +G+ + + D CVRDY+ V
Sbjct: 174 YGP------RQDPHG---EAGVVAIFAERVLKGL--PVTLYARKTPG-DEGCVRDYVYVG 221
Query: 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349
D+ +AH LAL + + GIYNVGTG+G + +E + A +A G +V+ RPGD
Sbjct: 222 DVAEAHALALFSLE----GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLER 277
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
P K+ W + +G +++ + +
Sbjct: 278 SVLSPLKLM-AHGWRPKVGFQEG-IRLTVDHFRGAV 311
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 372 bits (956), Expect = e-123
Identities = 133/361 (36%), Positives = 183/361 (50%), Gaps = 35/361 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGAGYIGSH + L+++ Y + DNLS +V L+ L + F DL
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHH--IPFYEVDLC 71
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D K + K+F E D+V+HFA + VGEST PLRYYHN T+V+LE M + V +
Sbjct: 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 131
Query: 172 YSSTCATYGE----PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSK--TTNMAVMILR 225
+SS+ YG+ P+ +PI E P P NPYG K E+I+ D + ILR
Sbjct: 132 FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 191
Query: 226 YFNVIGSDPEGRLGEAPH-------PELREHGRISGACFDA--ARGIIPGLKIRGTDYNT 276
YFN IG+ P G +GE P P + A A G L I G DY++
Sbjct: 192 YFNPIGAHPSGLIGEDPLGIPNNLLP------------YMAQVAVGRREKLYIFGDDYDS 239
Query: 277 ADGTCVRDYIDVTDLVDAHVLAL-----ANAKPGKVGIYNVGTGKGRSVKEFVEACKKAT 331
DGT +RDYI V DL H+ AL N G +N+G+GKG +V E A KA+
Sbjct: 240 RDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKAS 299
Query: 332 GVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
G+++ + RR GD + + P + + EL W ++ S + W+W + GY R
Sbjct: 300 GIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTEL-QVEDSCKDLWKWTTENPFGYQLR 358
Query: 392 N 392
Sbjct: 359 G 359
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 329 bits (847), Expect = e-112
Identities = 86/339 (25%), Positives = 138/339 (40%), Gaps = 41/339 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++VTGGAG+IGSH +L++ Y V +VDNLS G V + DL
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---------NPSAELHVRDLK 53
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D I D V HFAA V ST EP+ +++ T +LE V+T++
Sbjct: 54 DYSWGAGIK----GDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVV 109
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
++S+ YG+ D +P E P KPI+ YG AK E + +++ + + +RY NV+G
Sbjct: 110 FASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+ +LR + + L++ G DGT + Y+ V D
Sbjct: 170 PRLRHGVIYDFIMKLRRNPNV--------------LEVLG------DGTQRKSYLYVRDA 209
Query: 292 VDAHVLAL--ANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR------ 343
V+A + A NVG V + + + G+ ++ +
Sbjct: 210 VEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGW 269
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
PGD + +K+ W T + + A K
Sbjct: 270 PGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAK 308
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-109
Identities = 83/335 (24%), Positives = 130/335 (38%), Gaps = 39/335 (11%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGSH +L + + ++DNLS GN V + + ADL
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSES-NEIVVIDNLSSGNEEFV---------NEAARLVKADL 52
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ + + V H AA V P Y N T +LEAM V +
Sbjct: 53 AADDIKDYLKG---AEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRI 109
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+++ST YGE +P E P PI+ YG +K E +I + T +M I R+ NVI
Sbjct: 110 VFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVI 169
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G + L+I G +G + YI ++D
Sbjct: 170 G----------RRS--THGVIYD--FIMKLKRNPEELEILG------NGEQNKSYIYISD 209
Query: 291 LVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL---SRRPGDY 347
VDA + L +V I+N+G+ VK E + G++ + + GD
Sbjct: 210 CVDAMLFGL--RGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDV 267
Query: 348 AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
+ K++ L W R+ + +
Sbjct: 268 PVMLLSIEKLK-RLGWKPRYNSEEAVRMAVRDLVE 301
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 7e-84
Identities = 84/376 (22%), Positives = 127/376 (33%), Gaps = 53/376 (14%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG--------- 101
V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 102 -----QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGES---TLEPLRYYHNITS 153
++ D+ D + + + F D+V+HF S + HN
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 132
Query: 154 NTLVILEAMAAHKVKT-LIYSSTCATYGEPDK------MPITES-------TPQKPINPY 199
TL +L A+ + L+ T YG P+ + IT + P++ + Y
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGS--DPEGRLGEAPHPELREH---GRISG 254
+K I K + L V G D E + + ++
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 252
Query: 255 ACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AKPGKVGIYNVG 313
C AA G L + G T R Y+D+ D V +A+AN AK G+ ++N
Sbjct: 253 FCVQAAVGH--PLTVYGKGGQT------RGYLDIRDTVQCVEIAIANPAKAGEFRVFNQF 304
Query: 314 TGKGRSVKEFVEACKKATG-----VNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
T + SV E KA V R + + +K+ EL +
Sbjct: 305 TEQ-FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYL 362
Query: 369 DLQGSLQIAWRWQKTH 384
L +
Sbjct: 363 SDSL-LDSLLNFAVQF 377
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 1e-83
Identities = 81/354 (22%), Positives = 137/354 (38%), Gaps = 53/354 (14%)
Query: 38 STKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELF 97
S+ PR + V +TG G IGSH A LL+ +V +DN + G +
Sbjct: 11 SSGLVPRGS-HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL------- 62
Query: 98 PQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN--- 154
L F+ + D VN++ + DAV+H AA P +Y++ +N
Sbjct: 63 KDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKD------PDDWYNDTLTNCVG 116
Query: 155 TLVILEAMAAHKVKTLIYSSTCATYG-EPDKMPITESTPQKPIN-PYGKAKKMSEDIIID 212
+++A + V +Y T YG +P + P+ P+ P N Y +K +E D
Sbjct: 117 GSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE----D 172
Query: 213 FSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272
+ + + + + R NV+G P G P F + + G K
Sbjct: 173 YLEYSGLDFVTFRLANVVG--PRNVSGPLPI-------------F--FQRLSEGKKCF-- 213
Query: 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG 332
RD++ V DL A V A+ G Y+ +G ++KE +A +A
Sbjct: 214 -----VTKARRDFVFVKDLARATVRAVDGVGH---GAYHFSSGTDVAIKELYDAVVEAMA 265
Query: 333 VNIKVE--YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
+ E P D + DPS+ + T L+ ++ A + + +
Sbjct: 266 LPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEF-TPLKETVAAAVAYFREY 318
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 5e-76
Identities = 57/335 (17%), Positives = 112/335 (33%), Gaps = 47/335 (14%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+ VTGG G++G + + D I+ + +
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK---------------AINDYEYRV 48
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D + I N DAV+H AA E + N T + +A + + +
Sbjct: 49 SDYTLEDLINQLNDVDAVVHLAATRGSQGKISEF---HDNEIL-TQNLYDACYENNISNI 104
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+Y+ST + Y + +P E P YG +K E I +S+ + + LR+ ++
Sbjct: 105 VYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLY 164
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG--LKIRGTDYNTADGTCVRDYIDV 288
G + + + R G L + + R+++
Sbjct: 165 G----------------FNEKNNYMINRFFRQAFHGEQLTLHA------NSVAKREFLYA 202
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS-RRPGDY 347
D + + AL K G +N+G+G + E A G + +
Sbjct: 203 KDAAKSVIYALKQEKVS--GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGI 260
Query: 348 AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
Y D SK ++ L+++ + +++ +
Sbjct: 261 HSSYMDSSKAKELLDFSTD-YNFATAVEEIHLLMR 294
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 3e-75
Identities = 86/337 (25%), Positives = 142/337 (42%), Gaps = 28/337 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQEL--FPQPGQLQFIYAD 109
L+TG AG+IGS+ LLK +V +DN + G+ + ++ L Q +FI D
Sbjct: 30 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 89
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVK 168
+ + N A D V+H AA+ V S +P+ NI L +L A KV+
Sbjct: 90 IRNLDDCNNACAG--VDYVLHQAALGSVPRSINDPITSNATNIDG-FLNMLIAARDAKVQ 146
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
+ Y+++ +TYG+ +P E T KP++PY K ++E FS+ + + LRYFN
Sbjct: 147 SFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 206
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
V G +G + +I G + DG RD+ +
Sbjct: 207 VFG------------RRQDPNGAYAAVIPKWTSSMIQGDDV--YING--DGETSRDFCYI 250
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA-----CKKATGVNIKVEYLSRR 343
+ V A++LA + +YN+ G S+ + A + + + Y R
Sbjct: 251 ENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFR 310
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
GD +D SK L + + D+ + +A W
Sbjct: 311 EGDVRHSLADISKAAKLLGYAPK-YDVSAGVALAMPW 346
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 6e-74
Identities = 67/351 (19%), Positives = 119/351 (33%), Gaps = 50/351 (14%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNMGAVKVLQELFPQPGQL 103
H+ + G AG +G RL+KD + T++D G +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF---------SGAV 66
Query: 104 QFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMA 163
ADL K+ D + H AA+ GE+ L+ + Y T + +A+
Sbjct: 67 DARAADLSAPGEAEKLVEAR-PDVIFHLAAIV-SGEAELDFDKGYRINLDGTRYLFDAIR 124
Query: 164 AHKVKT-----LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTN 218
K ++++S+ A +G P PI + P+ YG K + E ++ D+S+
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGF 184
Query: 219 MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG--TDYNT 276
+ +R + G+ A G S + G L + ++
Sbjct: 185 FDGIGIRLPTICI--RPGKPNAA------ASGFFSNILREPLVGQEAVLPVPESIRHWHA 236
Query: 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK 336
+ + V I H + K G + G +V E +EA +K G
Sbjct: 237 SPRSAVGFLI--------HGAMIDVEKVGPRRNLS-MPGLSATVGEQIEALRKVAG-EKA 286
Query: 337 VEYLSRRPGDYAE--VYSDPSKIRD----ELNWTARFTDLQGSLQIAWRWQ 381
V + R P + EL +TA + +Q+ +
Sbjct: 287 VALIRREPNEMIMRMCEGWAPGFEAKRARELGFTAES-SFEEIIQVHIEDE 336
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 2e-72
Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 28/338 (8%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQEL--FPQPGQLQFIYA 108
L+TG AG+IGS+ +LLK + V +DN S G+ + ++ L Q + FI
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKV 167
D+ D ++ D V+H AA+ V S ++P+ NIT L IL A +V
Sbjct: 87 DIRDLTTCEQVMKG--VDHVLHQAALGSVPRSIVDPITTNATNITG-FLNILHAAKNAQV 143
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
++ Y+++ +TYG+ +P E P++PY K ++E +++T + LRYF
Sbjct: 144 QSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
NV G P I + ++ G + DG RD+
Sbjct: 204 NVFG--RRQD------PNGAYAAVIP--KW--TAAMLKGDDV--YING--DGETSRDFCY 247
Query: 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-----NIKVEYLSR 342
+ +++ ++L+ K IYNV G ++ E + + ++Y
Sbjct: 248 IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
R GD +D +K D L + ++ L+++ W
Sbjct: 308 RSGDVRHSQADVTKAIDLLKYRPN-IKIREGLRLSMPW 344
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 2e-67
Identities = 73/339 (21%), Positives = 127/339 (37%), Gaps = 45/339 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGS+ L + +VDNL G L +L D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLVDLNIAD---YMDKEDF 56
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ F + +A+ H A + E + + +N + +L ++
Sbjct: 57 LIQIMAGEEFGD--VEAIFHEGACSSTTEWDGKYM-MDNNYQY-SKELLHYCLEREIP-F 111
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+Y+S+ ATYG I +KP+N YG +K + ++ + N ++ RYFNV
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 231 G--SDPEGRLGE-APH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
G +G + A H +L + G RD+
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPK---------LFEG-----------SENFKRDF 211
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL----S 341
+ V D+ D ++ L N G GI+N+GTG+ S + +A ++EY+
Sbjct: 212 VYVGDVADVNLWFLEN---GVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDK 267
Query: 342 RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+ A +D + +R F + + W
Sbjct: 268 LKGRYQAFTQADLTNLRAAGYDKP-FKTVAEGVTEYMAW 305
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 2e-67
Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 55/338 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGGAG+IG H A L+ VT++D+L M + + +P L+ DL
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPV-LELEERDLS 68
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D V H A+ V S +PL Y N+ S +L + V ++
Sbjct: 69 D------------VRLVYHLASHKSVPRSFKQPLDYLDNVDS-GRHLLALCTSVGVPKVV 115
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNM-AVMILRYFNVI 230
STC YG+ D +P E +P P +PY +K E + + + V I+R+FNV
Sbjct: 116 VGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVY 175
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIP--------GLKIRGTDYNTADGTCV 282
G P R ++P ++ DG
Sbjct: 176 G--PGER----------------------PDALVPRLCANLLTRNEL--PVEG--DGEQR 207
Query: 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR 342
RD+ +TD+VD ++ALAN + N G+G+ SV + + +AT +V
Sbjct: 208 RDFTYITDVVDK-LVALANRPLP--SVVNFGSGQSLSVNDVIRIL-QATSPAAEVARKQP 263
Query: 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
RP + E +D + ++ + ++ +++ W
Sbjct: 264 RPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEW 301
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 4e-65
Identities = 73/340 (21%), Positives = 127/340 (37%), Gaps = 47/340 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGS+ L + +VDNL G L +L D
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLVDLNIA---DYMDKEDF 103
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ F + +A+ H A + E + + +N + +L ++
Sbjct: 104 LIQIMAGEEFGD--VEAIFHEGACSSTTEWDGKYM-MDNNYQY-SKELLHYCLEREIP-F 158
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+Y+S+ ATYG I +KP+N +G +K + ++ + N ++ RYFNV
Sbjct: 159 LYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 218
Query: 231 G--SDPEGRLGE-APH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
G +G + A H +L + G RD+
Sbjct: 219 GPREGHKGSMASVAFHLNTQLNNGESPK---------LFEG-----------SENFKRDF 258
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG 345
+ V D+ D ++ L N G GI+N+GTG+ S + +A ++EY+ P
Sbjct: 259 VYVGDVADVNLWFLEN---GVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIP-FPD 313
Query: 346 DYAEVY-----SDPSKIRDELNWTARFTDLQGSLQIAWRW 380
Y +D + +R F + + W
Sbjct: 314 KLKGRYQAFTQADLTNLRAAGYDKP-FKTVAEGVTEYMAW 352
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 8e-63
Identities = 87/350 (24%), Positives = 146/350 (41%), Gaps = 40/350 (11%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+V+V GGAG++GS+ RLL+ +V +VDNL + P ++F
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE------KINVPDHPA-VRFSETS 86
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK 168
+ D + + E +D V H A S +PL + N T TL + E + K +K
Sbjct: 87 ITDDALLASLQDE--YDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK 144
Query: 169 TLIYSSTCATYGEPDKMPITE------STPQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
++YS+ + E + +PY +K E + + K + +
Sbjct: 145 KVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTV 204
Query: 223 ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP---GLKIRGTD---YNT 276
R+ NV G P E+ GR G R + P ++G N
Sbjct: 205 RARFQNVYG----------PG-EILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLEN- 252
Query: 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK 336
G RD+I V D+ + + A+ PG G+YN+ +GK S+ + + TG N +
Sbjct: 253 -GGVATRDFIFVEDVANGLIACAADGTPG--GVYNIASGKETSIADLATKINEITGNNTE 309
Query: 337 VEYLSRRPGD-YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
++ L +RP D + + P K R EL ++A + G L+ W K ++
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDG-LRKTIEWTKANL 358
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 6e-61
Identities = 62/351 (17%), Positives = 121/351 (34%), Gaps = 48/351 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+LVTG +G IG+ L + + ++ ++ + + G +K FI D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK-------------FITLDV 48
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKT 169
+ +++ + + DA+ H A + + +P Y N+ T ILEA H+V+
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSA-KGEKDPALAYKVNMNG-TYNILEAAKQHRVEK 106
Query: 170 LIYSSTCATYG-EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
++ ST +G E K + T +P +G K +E + + + + V LRY
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARG---IIPGLKIRGTDYNTADGTCVRDY 285
+I + + A +
Sbjct: 167 IIS--YKAEPTAGT------TDYAVEIFYYAVKREKYKCYL-----------APNRALPM 207
Query: 286 IDVTDLVDAHVLAL-ANAKPGKVG-IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR 343
+ + D + A V A+ + YNV T + E K+ ++EY
Sbjct: 208 MYMPDALKALVDLYEADRDKLVLRNGYNV-TAYTFTPSELYSKIKERIP-EFEIEYKEDF 265
Query: 344 PGDYAEVYS---DPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
A + D S+ +E ++ + DL ++ + G
Sbjct: 266 RDKIAATWPESLDSSEASNEWGFSIEY-DLDRTIDDMIDHISEKLGIEGKH 315
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 7e-60
Identities = 71/340 (20%), Positives = 129/340 (37%), Gaps = 43/340 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFP----QPGQLQF 105
+L+TGGAG++GS+ A ++ +V ++D + + L + +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
I AD+ + + ++ + FD + H AAV+ L +LE +
Sbjct: 73 IAADINNPLDLRRLEKLH-FDYLFHQAAVSDTTML--NQELVMKTNYQAFLNLLEIARSK 129
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
K K +IY+S+ YG K P + P N YG +K ++ + S + + + LR
Sbjct: 130 KAK-VIYASSAGVYGNT-KAPNVVGKNESPENVYGFSKLCMDEFV--LSHSNDNVQVGLR 185
Query: 226 YFNVIG--SDPEGRL-GEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280
YFNV G + + + K+ G
Sbjct: 186 YFNVYGPREFYKEKTASMVLQLALGAMAFKEV---------------KLFE------FGE 224
Query: 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL 340
+RD++ + D++ A+V A+ K K G+YNVG + RS E V K+ G
Sbjct: 225 QLRDFVYIEDVIQANVKAM---KAQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVTYIK 281
Query: 341 SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+ + +L++T DL+ ++
Sbjct: 282 NPYAFFQKHTQAHIEPTILDLDYTP-LYDLESGIKDYLPH 320
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 8e-49
Identities = 46/244 (18%), Positives = 83/244 (34%), Gaps = 36/244 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG AG +GS L ++ V + D + G A + + + DL
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHE------------EIVACDLA 52
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
DA+AV+ + + D ++H V V + L+ NI + EA ++
Sbjct: 53 DAQAVHDLVKD--CDGIIHLGGV-SVERPWNDILQ--ANIIG-AYNLYEAARNLGKPRIV 106
Query: 172 YSSTCATYGE-PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
++S+ T G P I P++P + YG +K ED+ + ++ + +R +
Sbjct: 107 FASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCF 166
Query: 231 G--SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT--ADGTCVRDYI 286
D +S D R + +
Sbjct: 167 PKPKDARM-----------MATWLSV--DDFMRLMKRAFVAPKLGCTVVYGASANTESWW 213
Query: 287 DVTD 290
D
Sbjct: 214 DNDK 217
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 9e-49
Identities = 58/345 (16%), Positives = 105/345 (30%), Gaps = 55/345 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+L+ G G IG+ +L K I ++ + N V F +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN----------SGPFEVVNA 54
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKT 169
D + + + + AA+ + P + N+ S +L A K+K
Sbjct: 55 LDFNQIEHLVEVHKITDIYLMAALLSA-TAEKNPAFAWDLNMNS-LFHVLNLAKAKKIKK 112
Query: 170 LIYSSTCATYGEPDKMPIT-ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
+ + S+ A +G T + T +P YG +K+ E + + V +RY
Sbjct: 113 IFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPG 172
Query: 229 VIG--SDPEGRLGEAPHPELREHGRISGACF---DAARG---IIPGLKIRGTDYNTADGT 280
+I + P G G A A
Sbjct: 173 LISWSTPPGG-------------GTTDYAVDIFYKAIADKKYECFL-----------SSE 208
Query: 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS--VKEFVEACKKATGVNIKVE 338
+ + D +DA + + A K+ I++ S E KK +
Sbjct: 209 TKMPMMYMDDAIDA-TINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIP-EFTIT 266
Query: 339 YLSRRPGDYAEV---YSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
Y A+ D S+ R++ +W DL+ +
Sbjct: 267 YEPDFRQKIADSWPASIDDSQAREDWDWKHT-FDLESMTKDMIEH 310
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-43
Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 45/346 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + V D + + E +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------MTEDMFCD---EFHLVDLR 82
Query: 112 DAKAVNKIFAENAFDAVMHFAAVA----YVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
+ K+ D V + AA ++ +N T + ++EA + +
Sbjct: 83 VMENCLKVTEG--VDHVFNLAADMGGMGFIQS---NHSVIMYNNTMISFNMIEAARINGI 137
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQK----PINP---YGKAKKMSEDIIIDFSKTTNMA 220
K Y+S+ Y E ++ T + ++ P P +G K +E++ ++K +
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIE 197
Query: 221 VMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280
I R+ N+ G P G RE + C A ++ G DG
Sbjct: 198 CRIGRFHNIYG--PFGT----WKGG-REKA-PAAFCRKAQTSTDR-FEMWG------DGL 242
Query: 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL 340
R + + + V+ + + V N+G+ + S+ E E + + ++
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPV---NIGSDEMVSMNEMAEMVLSFEEKKLPIHHI 299
Query: 341 SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386
P SD + I+++L W L+ L+I + W K I
Sbjct: 300 P-GPEGVRGRNSDNNLIKEKLGWAPN-MRLKEGLRITYFWIKEQIE 343
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-42
Identities = 75/346 (21%), Positives = 139/346 (40%), Gaps = 54/346 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNMGAVKVLQELFPQPGQLQFIYADL 110
+L+TGG G++GS+ A L + + DNLSR G + L L G +F++ D+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDI 59
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHKVKT 169
+ V ++ + D+ H A + S P + N+ TL +LEA+ +
Sbjct: 60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGG-TLNLLEAVRQYNSNC 118
Query: 170 -LIYSSTCATYG----------------EPDKMPITESTPQKPINPYGKAKKMSEDIIID 212
+IYSST YG EST +PYG +K ++ ++D
Sbjct: 119 NIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 213 FSKTTNMAVMILRYFNVIGSDPEGRLGEAP--HPELREHGRISGACFDAARGIIPGLK-- 268
+++ + ++ R+ ++ G + G + C A K
Sbjct: 179 YARIFGLNTVVFRHSSMYG----------GRQFATYDQ-GWVGWFCQKAVEIKNGINKPF 227
Query: 269 -IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK--EFVE 325
I G +G VRD + D++ + ALAN + +N+G S+ E +
Sbjct: 228 TISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFK 281
Query: 326 ACKKATGVNIKVEYLSRRPGD---YAEVYSDPSKIRDELNWTARFT 368
+ ++++ L R D + +D KI + ++W+ + +
Sbjct: 282 LLEDYCNIDMRFTNLPVRESDQRVFV---ADIKKITNAIDWSPKVS 324
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 4e-41
Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 32/242 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG AG +G RL + + + D L L P + + DL
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILRLAD------------LSPLDPAGPNEECVQCDLA 53
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
DA AVN + A D ++H ++ V + + L+ NI + EA AH ++
Sbjct: 54 DANAVNAMVAG--CDGIVHLGGIS-VEKPFEQILQ--GNIIG-LYNLYEAARAHGQPRIV 107
Query: 172 YSSTCATYGE-PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
++S+ T G P + P +P YG +K E++ + ++R +
Sbjct: 108 FASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCT 167
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT--ADGTCVRDYIDV 288
P+ S D I + + D
Sbjct: 168 P---------EPNNYRMLSTWFSHD--DFVSLIEAVFRAPVLGCPVVWGASANDAGWWDN 216
Query: 289 TD 290
+
Sbjct: 217 SH 218
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-37
Identities = 59/379 (15%), Positives = 107/379 (28%), Gaps = 78/379 (20%)
Query: 43 PRHEPGVT-HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG 101
P PG V G G +G HAA + + + + + R ++ L L
Sbjct: 6 PLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVL---IHR-PSSQIQRLAYL----- 56
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILE 160
+ + A++ D + + D V+ A + T
Sbjct: 57 EPECRVAEMLDHAGLERALRG--LDGVIFSAGY--YPSRPRRWQEEVASALGQ-TNPFYA 111
Query: 161 AMAAHKVKTLIYSSTCATYGE-PDKMPITESTPQ----KPINPYGKAKKMSEDIIIDFSK 215
A +V ++Y + P +P E + Y K ++ + ++
Sbjct: 112 ACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR 171
Query: 216 TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275
+ V+I V+G GR+ G +
Sbjct: 172 -NGLPVVIGIPGMVLG----------ELDIGPTTGRV---ITAIGNGEMTHY-------- 209
Query: 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI 335
R+ ID + ++AL + G+ Y + G + + + G
Sbjct: 210 ---VAGQRNVIDAAEAGRGLLMALERGRIGER--YLLT-GHNLEMADLTRRIAELLGQPA 263
Query: 336 K--------------VEYLSRRPG-------DYAEVYS-----DPSKIRDELNWTARFTD 369
R G EV + D K R+EL + T
Sbjct: 264 PQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFF-STTA 322
Query: 370 LQGSLQIAWRWQKTHINGY 388
L +L A W + + GY
Sbjct: 323 LDDTLLRAIDWFRDN--GY 339
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 41/307 (13%), Positives = 87/307 (28%), Gaps = 70/307 (22%)
Query: 52 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+++TG G++G + L + + V +
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQT--------------------------- 35
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ + + D ++H A V + S +L+ + + K
Sbjct: 36 -KEEELESALLK--ADFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPA 88
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
I S+ S NPYG++K E ++ ++++ V I R+ N+
Sbjct: 89 ILLSS--------------SIQATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLF 134
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G + A F R + D V D
Sbjct: 135 G--KWCKPNYNSVI----------ATFCYK-------IARNEEIQVNDRNVELTLNYVDD 175
Query: 291 LVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEV 350
+V A+ + G+ V ++ E V+ K +++ + + E
Sbjct: 176 IVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQS--RLDRTLPKLDNLFEK 233
Query: 351 YSDPSKI 357
+ +
Sbjct: 234 DLYSTYL 240
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-32
Identities = 70/362 (19%), Positives = 128/362 (35%), Gaps = 52/362 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+ G G+IG+H RLL++ Y V +D S + P F+ D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-------ISRFLNHPH-FHFVEGDI 54
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ + D V+ A+A E T PLR + L I+ ++ K +
Sbjct: 55 SIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRI 112
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINP-------YGKAKKMSEDIIIDFSKTTNMAVMI 223
I+ ST YG E + P Y +K++ + +I + + + +
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 224 LRYFNVIGSDPEGRLGEAPHPELREHGR-ISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
R FN +G P RL + R I+ + G P +K+ G
Sbjct: 173 FRPFNWMG--P--RLDNLNAARIGS-SRAITQLILNLVEG-SP-IKLID------GGKQK 219
Query: 283 RDYIDVTDLVDAHVLALANAKPGKV--GIYNVGTGKG-RSVKEFVEACKKATGVNIKVEY 339
R + D+ D ++A + + + I N+G + S++E E + + +
Sbjct: 220 RCFTDIRDGIEA-LYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHH 278
Query: 340 LSRRPGD--------YAEVYSDP-------SKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
G Y + Y D L+W + D+Q ++ +
Sbjct: 279 FPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPK-IDMQETIDETLDFFLRT 337
Query: 385 IN 386
++
Sbjct: 338 VD 339
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 5e-31
Identities = 69/360 (19%), Positives = 124/360 (34%), Gaps = 49/360 (13%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+ G G+IG H + R+L+ + ++ L +L + F D+
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDR------LGDLVKHER-MHFFEGDI 78
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
K + + D ++ A+A +PLR + L I+ + + K L
Sbjct: 79 TINKEWVEYHVKK-CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHL 136
Query: 171 IYSSTCATYGEPDKMPI---TESTPQKPINP----YGKAKKMSEDIIIDFSKTTNMAVMI 223
++ ST YG + PIN Y +K++ + +I + + +
Sbjct: 137 VFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGM-EGLNFTL 195
Query: 224 LRYFNVIGSDPEGRLGEAPHPELREHGR-ISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
R FN IG P L P+ R ++ RG + + G+
Sbjct: 196 FRPFNWIG--P--GLDSIYTPKEGS-SRVVTQFLGHIVRG--ENISLVD------GGSQK 242
Query: 283 RDYIDVTDLVDAHVLALANAKPGKVG-IYNVGTGKG-RSVKEFVEACKKATGVNI----- 335
R + V D + A + + N+ G IYN+G SV+E +
Sbjct: 243 RAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADS 302
Query: 336 --KVEYLSRRPGDY-AEVYSDP-------SKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+V+ + G Y Y D EL W + +L+ + + H+
Sbjct: 303 AKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQ-FTFDDALRQIFEAYRGHV 361
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 58/331 (17%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+L+TGGAG++GSH +L+ D + VT+VDN G + ++ + I D+
Sbjct: 29 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---RNVEHWIGHEN-FELINHDV 84
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
V ++ E D + H A+ A P++ T TL +L + L
Sbjct: 85 -----VEPLYIE--VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLL 137
Query: 171 IYSSTCATYGEPDKMPITES-----TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
+ +ST YG+P+ P +E P P Y + K+++E + + K + V + R
Sbjct: 138 L-ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 196
Query: 226 YFNVIGSDPEGRLGEAPHPELREH-GR-ISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283
FN G P + + GR +S A +G L + G G+ R
Sbjct: 197 IFNTFG------------PRMHMNDGRVVSNFILQALQGE--PLTVYG------SGSQTR 236
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS-- 341
+ V+DLV+ ++AL N+ N+G + ++ EF + K G ++++LS
Sbjct: 237 AFQYVSDLVNG-LVALMNSNVS--SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA 293
Query: 342 ------RRPGDYAEVYSDPSKIRDELNWTAR 366
R+P D K + L W
Sbjct: 294 QDDPQKRKP--------DIKKAKLMLGWEPV 316
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 89/344 (25%), Positives = 145/344 (42%), Gaps = 72/344 (20%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDS------YRVTIVDNLS-RGNMGAVKVLQELFPQPGQL 103
+LVTGGAG+IGSH +LL + V ++D+L+ GN L + P +L
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN---LAPVDADP-RL 57
Query: 104 QFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILE 160
+F++ D+ DA + + DA++HFAA ++V S + +N T +L+
Sbjct: 58 RFVHGDIRDAGLLARELRG--VDAIVHFAAESHVDRSIAGASVF---TETNVQGTQTLLQ 112
Query: 161 AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMA 220
V +++ ST YG D TES+P +P +PY +K S+ + + +T +
Sbjct: 113 CAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 221 VMILRYFNVIGSDPEGRLGEAP--HPELREHGRISGACFDAARGIIP----------GLK 268
V I R N G P HPE +IP L
Sbjct: 173 VRITRCCNNYG----------PYQHPE----------------KLIPLFVTNLLDGGTLP 206
Query: 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACK 328
+ G DG VR+++ D L LA + G++ Y++G G + +E
Sbjct: 207 LYG------DGANVREWVHTDDHCRGIALVLAGGRAGEI--YHIGGGLELTNRELTGILL 258
Query: 329 KATGVNIK-VEYLSRRPG-D--YAEVYSDPSKIRDELNWTARFT 368
+ G + V ++ R G D Y+ D KI EL + + +
Sbjct: 259 DSLGADWSSVRKVADRKGHDLRYS---LDGGKIERELGYRPQVS 299
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 89/361 (24%), Positives = 147/361 (40%), Gaps = 78/361 (21%)
Query: 51 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIY 107
+++VTGGAG+IGS+ + + VT++D L+ GN ++ + +++ +
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-----DRVELVV 60
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAHK 166
D+ DA+ V+K+ A+ DA++H+AA ++ S +P + H N T +LEA +
Sbjct: 61 GDIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIG-TYTLLEAARKYD 117
Query: 167 VK-----------TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSK 215
++ L +GE T T P +PY K S+ I+ + +
Sbjct: 118 IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVR 177
Query: 216 TTNMAVMILRYFNVIGSDPEGRLGEAP--HPELREHGRISGACFDAARGIIP-------- 265
+ + I N G P H E IP
Sbjct: 178 SFGVKATISNCSNNYG----------PYQHIE----------------KFIPRQITNILA 211
Query: 266 --GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEF 323
K+ G +G VRD+I D L + G+ Y +G ++ KE
Sbjct: 212 GIKPKLYG------EGKNVRDWIHTNDHSTGVWAILTKGRMGET--YLIGADGEKNNKEV 263
Query: 324 VEACKKATGVNIK-VEYLSRRPG-D--YAEVYSDPSKIRDELNWTARFTDLQGSLQ--IA 377
+E + G ++++ R G D YA D SK+RDEL WT +FTD L+ I
Sbjct: 264 LELILEKMGQPKDAYDHVTDRAGHDLRYA---IDASKLRDELGWTPQFTDFSEGLEETIQ 320
Query: 378 W 378
W
Sbjct: 321 W 321
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 6e-22
Identities = 63/351 (17%), Positives = 116/351 (33%), Gaps = 38/351 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIV--DNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
V VTG G+ G +L L V + ++ + + +Q D
Sbjct: 12 VFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADG------MQSEIGD 65
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM-AAHKVK 168
+ D + + E + V H AA V S EP+ Y T+ +LEA+ VK
Sbjct: 66 IRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK 125
Query: 169 TLIYSSTCATYGEPD-KMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
++ ++ Y + E+ +PY +K +E + + + ++
Sbjct: 126 AVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHG 185
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL---KIRGTDYNTADGTCVRD 284
+ + G + G A I+P + + + +R
Sbjct: 186 TAVATVRA--------------GNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRP 231
Query: 285 YIDVTDLVDAHVL---ALANAKPGKVGIYNVGTGKG--RSVKEFVEACKKATGVNIKVEY 339
+ V + + ++L L +N G VK VE K G +
Sbjct: 232 WQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGAS--W 289
Query: 340 LSRRPGDYAEV---YSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387
E D SK + +L W R+ +L +L+ W K ++G
Sbjct: 290 QLDGNAHPHEAHYLKLDCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNWLSG 339
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 3e-20
Identities = 34/254 (13%), Positives = 72/254 (28%), Gaps = 51/254 (20%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+++ G +G++GS L + VT +V + + + + L+ AD
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK-----------IKIENEHLKVKKAD 54
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ V ++ DAV+ + + L I++ + V
Sbjct: 55 VSSLDEVCEVCK--GADAVISAFNPGWNNPDIYDET------IKVYLTIIDGVKKAGVNR 106
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
+ + + + + + + P N K + E + K + +
Sbjct: 107 FLMVGGAGSLFIAPGLRLMD-SGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAAD 165
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+ G+ G G D D +I V
Sbjct: 166 MRP-----------------------------GVRTGRYRLGKDDMIVDIVG-NSHISVE 195
Query: 290 DLVDAHVLALANAK 303
D A + L + K
Sbjct: 196 DYAAAMIDELEHPK 209
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 1e-19
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYA 108
+LVTGGAG+IGS+ +L+ ++Y++ D L+ GN+ ++ + P F+
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNN---VKSIQDHP-NYYFVKG 82
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAH 165
++ + + + + E +++FAA ++V S P+ + +N T+ +LE + +
Sbjct: 83 EIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPF---YDTNVIGTVTLLELVKKY 139
Query: 166 KVKTLIYSSTCATYGE-PDKMPITESTPQKPINPYGKAKKMSED 208
L+ ST YG TE TP P +PY + K S D
Sbjct: 140 PHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPY-SSSKASAD 182
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA-CKKATGVNIK 336
DG VRD++ VTD A + L + G+V YN+G ++ E VE
Sbjct: 233 DGLNVRDWLHVTDHCSAIDVVLHKGRVGEV--YNIGGNNEKTNVEVVEQIITLLGKTKKD 290
Query: 337 VEYLSRRPG-D--YAEVYSDPSKIRDELNWTARFT 368
+EY++ R G D YA + K+++E +W ++T
Sbjct: 291 IEYVTDRLGHDRRYA---INAEKMKNEFDWEPKYT 322
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 4e-19
Identities = 56/346 (16%), Positives = 103/346 (29%), Gaps = 53/346 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTI--VDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
L+ G G IG+ A L V ++R A + + ++ D
Sbjct: 4 ALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------HEDNPINYVQCD 56
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NITSNTLVILEAMAAH--- 165
+ D + V H V + ST + + + N L + +
Sbjct: 57 ISDPDDSQAKLS--PLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKH 114
Query: 166 ---KVKTLIYSSTCATYG--EPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKTTNM 219
+ Y +YG E P TE P+ N Y + + ++ + K +
Sbjct: 115 ISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFY---YDLEDIMLEEVEKKEGL 171
Query: 220 AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279
+ R N+ G P + + A G + ++
Sbjct: 172 TWSVHRPGNIFGFSPYSMMNLVGTLCVY-------AAICKHEGKVLRFTGCKAAWD---- 220
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--- 336
D D + + H+ A A K +NV G K F + + GV
Sbjct: 221 -GYSDCSDADLIAEHHIWA-AVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYE 278
Query: 337 -------VEYLSRRPGDYAEVYS----DPSKIRDELNWTARFTDLQ 371
+ + + + E+ P+K++D W F D+
Sbjct: 279 EGVDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIW--WFGDVI 322
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 4e-19
Identities = 45/334 (13%), Positives = 94/334 (28%), Gaps = 60/334 (17%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+L+ G G +G A RL + VT L R + P +Q + AD+
Sbjct: 5 KILIAG-CGDLGLELARRLTAQGHEVTG---LRRS--------AQPMPAG--VQTLIADV 50
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ I + +++ A + + Y N L A+ ++ +
Sbjct: 51 TRPDTLASI-VHLRPEILVYCVAASEYSDEHYR--LSYVEGLRN---TLSALEGAPLQHV 104
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+ S+ YG+ + + E TP + GK +E ++ + ILR+ +
Sbjct: 105 FFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEALL------AAYSSTILRFSGIY 158
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G GRL ++ T + I D
Sbjct: 159 G---PGRL--------------------------RMIRQAQTPEQWPARNAWTNRIHRDD 189
Query: 291 LVDAHVLALANAKPGKVG-IYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349
+ +Y V + V + + G+ + +
Sbjct: 190 GAAFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAY-PAGATPPVQGNKK 248
Query: 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383
+ + ++ + + D +
Sbjct: 249 LSNA--RLL-ASGYQLIYPDYVSGYGALLAAMRE 279
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 3e-18
Identities = 53/285 (18%), Positives = 91/285 (31%), Gaps = 57/285 (20%)
Query: 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQL 103
H G V GG G++ S LL+ Y V T V + V L EL + G L
Sbjct: 5 HPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQK--KVSHLLEL-QELGDL 61
Query: 104 QFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN--------- 154
+ ADL D + A D V H A P +
Sbjct: 62 KIFRADLTDELSFEAPIA--GCDFVFHVAT----------P--VHFASEDPENDMIKPAI 107
Query: 155 --TLVILEAMA-AHKVKTLIYSSTCAT----YGEPDKMPITES---------TPQKPINP 198
+ +++A A VK +I +S+ A + + + E + + P
Sbjct: 108 QGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG 167
Query: 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258
Y +K ++E F++ N ++I P G + ++ ++ +
Sbjct: 168 YPASKTLAEKAAWKFAEENN--------IDLITVIPTLMAGSSLTSDVPSSIGLAMSLIT 219
Query: 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303
+I G+K + V D+ AH+
Sbjct: 220 GNEFLINGMKGMQMLSGSV------SIAHVEDVCRAHIFVAEKES 258
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 7e-18
Identities = 55/276 (19%), Positives = 89/276 (32%), Gaps = 61/276 (22%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
V VTG +G+IGS +RLL+ Y V V + + VK L +L L ADL
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK--KVKHLLDLPKAETHLTLWKADL 65
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN-----------TLVIL 159
D + ++ V H A P L I+
Sbjct: 66 ADEGSFDEAIK--GCTGVFHVAT----------P--MDFESKDPENEVIKPTIEGMLGIM 111
Query: 160 EAMA-AHKVKTLIYSSTCAT--YGEPDKMPITES---------TPQKPINPYGKAKKMSE 207
++ A A V+ L+++S+ T E ES + Y +K ++E
Sbjct: 112 KSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAE 171
Query: 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267
++K N + I P +G + A I G
Sbjct: 172 QAAWKYAKENN--------IDFITIIPTLVVGPFIMSSM-------PPSLITALSPITGN 216
Query: 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303
+ + ++ + DL +AH+ N K
Sbjct: 217 EAHYSIIRQG------QFVHLDDLCNAHIYLFENPK 246
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 1e-17
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 51 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIY 107
+LVTGG G+IGS+ +L+ + V +D L N +K L++ P + F+
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED---DP-RYTFVK 60
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAA 164
D+ D + V ++ + D V+H AA ++V S P + + SN T +LE++
Sbjct: 61 GDVADYELVKELVRK--VDGVVHLAAESHVDRSISSPEIF---LHSNVIGTYTLLESIRR 115
Query: 165 HKVKTLIYS-STCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208
+ ST YG+ K TE+ P +PY A K + D
Sbjct: 116 ENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPY-SATKAASD 159
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK- 336
G VRD++ V D V A L L + ++ YN+ G+ ++ E V+ + G +
Sbjct: 210 TGKNVRDWLYVEDHVRAIELVLLKGESREI--YNISAGEEKTNLEVVKIILRLMGKGEEL 267
Query: 337 VEYLSRRPG-D--YAEVYSDPSKIRDELNWTARFT 368
+E + RPG D Y+ D KI +L W ++T
Sbjct: 268 IELVEDRPGHDLRYS---LDSWKITRDLKWRPKYT 299
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-17
Identities = 55/278 (19%), Positives = 95/278 (34%), Gaps = 61/278 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
V VTGG G++GS LL++ Y V T + V L L +L F ADL
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPE-RKRDVSFLTNLPGASEKLHFFNADL 62
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN-----------TLVIL 159
+ + + H A+ P ++ L IL
Sbjct: 63 SNPDSFAAAIE--GCVGIFHTAS----------P--IDFAVSEPEEIVTKRTVDGALGIL 108
Query: 160 EAMA-AHKVKTLIYSSTCAT--YGEPDKMPITES---------TPQKPINPYGKAKKMSE 207
+A + VK IY+S+ + + DK + ES + + Y +K ++E
Sbjct: 109 KACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAE 168
Query: 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267
+++F + +V+ +G P+L + A ++ G
Sbjct: 169 KAVLEFGEQNG--------IDVVTLILPFIVGRFVCPKL-------PDSIEKALVLVLG- 212
Query: 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG 305
+ + V D+ AH+ L N+ PG
Sbjct: 213 --KKEQIGVTRFH----MVHVDDVARAHIYLLENSVPG 244
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 72/363 (19%), Positives = 127/363 (34%), Gaps = 48/363 (13%)
Query: 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY 107
T VL+ G G+IG+H RLL++ Y V +D S + P F+
Sbjct: 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS-------DAISRFLNHP-HFHFVE 366
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
D+ + + D V+ A+A E T PLR + L I+ ++
Sbjct: 367 GDISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR- 424
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKPINP-------YGKAKKMSEDIIIDFSKTTNMA 220
K +I+ ST YG E + P Y +K++ + +I + + +
Sbjct: 425 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 484
Query: 221 VMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280
+ R FN +G RL + R ++ G I+ D G
Sbjct: 485 FTLFRPFNWMGP----RLDNLNAARIG-SSRAI-TQL--ILNLVEGSPIKLID----GGK 532
Query: 281 CVRDYIDVTDLVDAHVLALANAKPGKVG-IYNVGTGKGR-SVKEFVEACKKATGVNIKVE 338
R + D+ D ++A + NA G I N+G + S++E E + +
Sbjct: 533 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRH 592
Query: 339 YLSRRPGD--------YAEVYSDP-------SKIRDELNWTARFTDLQGSLQIAWRWQKT 383
+ G Y + Y D L+W + D+Q ++ +
Sbjct: 593 HFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPK-IDMQETIDETLDFFLR 651
Query: 384 HIN 386
++
Sbjct: 652 TVD 654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
L+TG AG++G + A L + + V SR N + ++ I D+
Sbjct: 15 ALITGVAGFVGKYLANHLTEQNVEVF---GTSRNNEAKLP----------NVEMISLDIM 61
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN-TLVILEAMAAHKVKTL 170
D++ V K+ ++ D + H AA + V +S L + TL +L+A+ +
Sbjct: 62 DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKK-GTFSTNVFGTLHVLDAVRDSNLDCR 120
Query: 171 IY-SSTCATYG--EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF 227
I + YG P++ P++E +P++PYG +K + + K M ++ R F
Sbjct: 121 ILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 228 N 228
N
Sbjct: 181 N 181
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE---- 338
RD+ DV D+V A+ L K G V YNV +G G +++ ++ V I E
Sbjct: 221 RDFTDVRDIVQAYWLLSQYGKTGDV--YNVCSGIGTRIQDVLDLLLAMANVKIDTELNPL 278
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
L RP + + +++D W R
Sbjct: 279 QL--RPSEVPTLIGSNKRLKDSTGWKPRIP 306
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 4e-16
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 32/182 (17%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYA 108
+L+TGGAG+IGS ++K++ V +D L+ GN+ + L ++ + F +A
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES---LSDISESN-RYNFEHA 57
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAH 165
D+ D+ + +IF + DAVMH AA ++V S P + I +N T +LE +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAF---IETNIVGTYALLEVARKY 114
Query: 166 KVKTLIYS---------STCATYG---EPDKMPI-------TESTPQKPINPYGKAKKMS 206
ST YG PD++ TE+T P +PY A K S
Sbjct: 115 WSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPY-SASKAS 173
Query: 207 ED 208
D
Sbjct: 174 SD 175
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 22/105 (20%)
Query: 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK---EFVEA-CK----- 328
G +RD++ V D A + + K G+ YN+G G + K + V C
Sbjct: 226 KGDQIRDWLYVEDHARALHMVVTEGKAGET--YNIG---GHNEKKNLDVVFTICDLLDEI 280
Query: 329 --KATGVNIKVEYLSRRPG-D--YAEVYSDPSKIRDELNWTARFT 368
KAT ++ Y++ RPG D YA D KI EL W T
Sbjct: 281 VPKATSYREQITYVADRPGHDRRYA---IDAGKISRELGWKPLET 322
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 52/292 (17%), Positives = 90/292 (30%), Gaps = 77/292 (26%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
+ VLVTG G++ SH +LL+ Y+V + S+ LQ+ + +F A
Sbjct: 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKL-----ANLQKRWDAKYPGRFETA 66
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-----NITSN--------- 154
+ D + + A+D V A V H + ++
Sbjct: 67 VVED------MLKQGAYDEV--IKGAAGV----------AHIASVVSFSNKYDEVVTPAI 108
Query: 155 --TLVILEAMAAHK-VKTLIYSSTCAT----YGEPDKMPITEST---------------- 191
TL L A AA VK + +S+ + + + + E +
Sbjct: 109 GGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESD 168
Query: 192 PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGR 251
PQK + Y +K +E F F + P +G PE
Sbjct: 169 PQKSLWVYAASKTEAELAAWKFMDENKPH------FTLNAVLPNYTIGTIFDPET--QSG 220
Query: 252 ISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303
+ + L G + Y+ D+ H+ L +
Sbjct: 221 STSG-------WMMSL-FNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ 264
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 88/340 (25%), Positives = 137/340 (40%), Gaps = 56/340 (16%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQE--LFPQPGQLQFIYAD 109
L+TG G GS+ LL Y V ++ S N + + ++ YAD
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYAD 91
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITS-NTLVILEAMAAHKV- 167
L DA ++ + D V + AA ++V S P Y ++ + L +LEA+ +H +
Sbjct: 92 LTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPD-YTADVVATGALRLLEAVRSHTID 150
Query: 168 ---KTLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNM-AVM 222
Y + + +G P +E+TP P +PY +K + +++ + + A
Sbjct: 151 SGRTVKYYQAGSSEMFGST-PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACN 209
Query: 223 -ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACF------DAARGIIPGLKIRGTDYN 275
IL FN E+P R G F A I GL+ + N
Sbjct: 210 GIL--FN----------HESP---RR------GENFVTRKITRALGRIKVGLQTKLFLGN 248
Query: 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI 335
RD+ D V+A L L KP Y V T +G +V+EF++ G+N
Sbjct: 249 L---QASRDWGFAGDYVEAMWLMLQQEKPDD---YVVATEEGHTVEEFLDVSFGYLGLNW 302
Query: 336 K--VEYLSR--RPGDYAEVYS---DPSKIRDELNWTARFT 368
K VE R RP AEV + D SK ++ L W +
Sbjct: 303 KDYVEIDQRYFRP---AEVDNLQGDASKAKEVLGWKPQVG 339
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 2e-11
Identities = 60/332 (18%), Positives = 106/332 (31%), Gaps = 53/332 (15%)
Query: 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--MGAVKVLQELFPQP 100
P P + VL+TG G++G + L LL+ + L R A + L++ F
Sbjct: 67 PGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSG 126
Query: 101 G-------------QLQFIYADLGDAK-----AVNKIFAENAFDAVMHFAA-VAYVGEST 141
+L+ + D + + + AE D ++ AA V
Sbjct: 127 DPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETV-DLIVDSAAMVNAFPYHE 185
Query: 142 LEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINP--- 198
L N+ T ++ K+K Y ST + TE + I+P
Sbjct: 186 LFGP----NVAG-TAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRT 240
Query: 199 --------YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHG 250
YG +K E ++ + + + V + R ++ G+ +
Sbjct: 241 VDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYA--GQLNMSDW--VT 296
Query: 251 RISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGK---- 306
R+ + A GI P D + V V + L G
Sbjct: 297 RMVLSL--MATGIAPRSFYEPDSEGNRQRAHF-DGLPV-TFVAEAIAVLGARVAGSSLAG 352
Query: 307 VGIYNVGTGKGRSV--KEFVEACKKATGVNIK 336
Y+V + E+V+ +A G I+
Sbjct: 353 FATYHVMNPHDDGIGLDEYVDWLIEA-GYPIR 383
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNMGAVKVLQELFPQPGQLQFI 106
LVTG G G++ A LL+ YRV D R L+EL + +Q+
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR--------LRELGIEG-DIQYE 68
Query: 107 YADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITS-NTLVILEAMAAH 165
D+ DA +V + + V + AA ++VG S +P+ + +LEA+
Sbjct: 69 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPV-TTGVVDGLGVTHLLEAIRQF 127
Query: 166 KVKTLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAK 203
+T Y +ST +G E+TP P +PYG AK
Sbjct: 128 SPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAK 166
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 310 YNVGTGKGRSVKEFVEACKKATGVNIK--VEYLSR--RPGDYAEVYS---DPSKIRDELN 362
Y V TG +V++ + + G++ + ++ RP AEV +P+K + L
Sbjct: 254 YVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRP---AEVDVLLGNPAKAQRVLG 310
Query: 363 WTARFT 368
W R +
Sbjct: 311 WKPRTS 316
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGG G G +R + D+ + SR + + + F P +++F D+
Sbjct: 24 ILITGGTGSFG-KCFVRKVLDTTNAKKIIVYSRDELKQSE-MAMEFNDP-RMRFFIGDVR 80
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYH-NI--TSNTLVILEAMAAHKVK 168
D + +N A D +H AA+ +V + PL NI SN ++ A + +
Sbjct: 81 DLERLNY--ALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASN---VINACLKNAIS 135
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID---FSKTTNMAVMILR 225
+I ST DK PIN YG K S+ + + F ++ ++R
Sbjct: 136 QVIALST-------DKAA-------NPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVR 181
Query: 226 YFNVIGS 232
Y NV+GS
Sbjct: 182 YGNVVGS 188
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-10
Identities = 22/219 (10%), Positives = 49/219 (22%), Gaps = 28/219 (12%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+ V G G GS + + V +V + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA------------ADRLGATVATLV 49
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ DAV+ +V + L ++ +
Sbjct: 50 KEPLVLTEADLD--SVDAVVDALSVPWGSGRGYLHLD-------FATHLVSLLRNSDTLA 100
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
+ + + P+ P+ P+ N+ + +
Sbjct: 101 VFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSE 160
Query: 229 VIGSDPEG--RLGEAPHPELRE-HGRISGACFDAARGII 264
S P G+ + I+ + A I+
Sbjct: 161 AFPSGPATSYVAGKDTLLVGEDGQSHITTG--NMALAIL 197
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-10
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 27/162 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+ + G G G + ++ Y VT +V + SR L P+ + D+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR--------LPSEGPR--PAHVVVGDV 55
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
A V+K A DAV+ + L P N I+ AM AH V +
Sbjct: 56 LQAADVDKTVA--GQDAVIV----LLGTRNDLSPTTVMSEGARN---IVAAMKAHGVDKV 106
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID 212
+ ++ +P K+P + ++ +
Sbjct: 107 VACTSAFLLWDPTKVP-------PRLQAVTDDHIRMHKVLRE 141
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNMGAVKVLQELFPQPGQLQFI 106
L+TG G G++ A LL+ Y V + R L+EL + ++ I
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR--------LKELGIEN-DVKII 57
Query: 107 YADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITS-NTLVILEAMAAH 165
+ DL + + + + D V + AA ++VG S +P+ + + L ILEA+
Sbjct: 58 HMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPI-LTAEVDAIGVLRILEALRTV 116
Query: 166 KVKTLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAK 203
K T Y +ST +G+ ++P TE TP P +PY AK
Sbjct: 117 KPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAK 155
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 8e-10
Identities = 79/380 (20%), Positives = 137/380 (36%), Gaps = 109/380 (28%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V + G G +GS A R L+ V +V ++ EL +L
Sbjct: 6 VFIAGHRGMVGS-AIRRQLEQRGDVELV----------LRTRDEL------------NLL 42
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVG---ESTLEPLRY-YHNITSNTLVILEAMAAHKV 167
D++AV+ FA D V + A A VG + P + Y N+ + +I A + V
Sbjct: 43 DSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNII-HAAHQNDV 99
Query: 168 KTLIY-SSTCATYGEPDKMPITEST----PQKPIN-PYGKAK----KMSEDIIIDFSKTT 217
L++ S+C Y + K P+ ES +P N PY AK K+ E
Sbjct: 100 NKLLFLGSSCI-YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCE---------- 148
Query: 218 NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGR--IS---------GACFDAARG-IIP 265
+N R++GR S F + +IP
Sbjct: 149 --------SYN------------------RQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP 182
Query: 266 GL-------KIRGTDYNTA--DGTCVRDYIDVTDLVDAHVLALANAKPG-------KVGI 309
L + GT +R+++ V D+ A + + A +
Sbjct: 183 ALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSH 242
Query: 310 YNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP-GDYAEVYSDPSKIRDELNWTARFT 368
NVGTG +++E + K G +V + + +P G ++ D +++ +L W
Sbjct: 243 INVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKL-LDVTRLH-QLGWYHE-I 299
Query: 369 DLQGSLQIAWRWQKTHINGY 388
L+ L ++W + + +
Sbjct: 300 SLEAGLASTYQWFLENQDRF 319
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-09
Identities = 19/186 (10%), Positives = 49/186 (26%), Gaps = 26/186 (13%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+ + G G GS + VT IV N + + + + D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK-----------ITQTHKDINILQKD 50
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D + + V+ ++ ++ ++ +
Sbjct: 51 IFDLTLS----DLSDQNVVVDAYGISPDEAEKH---------VTSLDHLISVLNGTVSPR 97
Query: 170 LIY-SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
L+ + + D + ES + Y A+ ++ + S + +
Sbjct: 98 LLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSA 157
Query: 229 VIGSDP 234
+
Sbjct: 158 MFEPGE 163
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 54/335 (16%), Positives = 106/335 (31%), Gaps = 68/335 (20%)
Query: 57 GAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAV 116
G GY + L +R+ SR N ++ ++ +P L +
Sbjct: 12 GHGYTARVLSRALAPQGWRIIG---TSR-NPDQMEAIRASGAEPLLWPGEEPSLDGVTHL 67
Query: 117 NKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176
++ A + +P+ L A A + + + Y ST
Sbjct: 68 -----------LISTAPDSGG-----DPVL-------AALGDQIAARAAQFRWVGYLSTT 104
Query: 177 ATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEG 236
A YG+ D + E+TP P G+ + M+E + N+ + + R G
Sbjct: 105 AVYGDHDGAWVDETTPLTPTAARGRWRVMAEQ---QWQAVPNLPLHVFRL--------AG 153
Query: 237 RLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHV 296
G P + +G V I V D+
Sbjct: 154 IYGPGRGPFSKL--------------------GKGGIRRIIKPGQVFSRIHVEDIAQVLA 193
Query: 297 LALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI--KVEYLSRRPGDYAEVYSDP 354
++A PG +YNV + ++ + + G+ + V++ A +
Sbjct: 194 ASMARPDPG--AVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSE 251
Query: 355 SK------IRDELNWTARFTDLQGSLQIAWRWQKT 383
+K I++EL ++ + + L+ +T
Sbjct: 252 NKRVRNDRIKEELGVRLKYPNYRVGLEALQADAET 286
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 27/174 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ + G G +G L Y++ +R + V + + + ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYA---GAR-KVEQVPQYNNVKAVHFDVDWTPEEMA 58
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
DA+++ G+S L+ Y + +++A +VK I
Sbjct: 59 KQLH--------GMDAIIN--VSGSGGKSLLKVDLYG------AVKLMQAAEKAEVKRFI 102
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
ST + +P+K + Y AK ++ + K TN+ I++
Sbjct: 103 LLSTIFS-LQPEKWI---GAGFDALKDYYIAKHFADLYLT---KETNLDYTIIQ 149
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 6e-08
Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 55/294 (18%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+ +L+ G GYIG H A L + ++ S + + K + ++
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D ++ + D V + V + I S +I VK
Sbjct: 65 IDDHASLVEAVKN--VDVV--ISTVGSLQ------------IESQVNIIKAIKEVGTVKR 108
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDII--IDFSKTTNMAVMILRYF 227
S +G + +P + K I T + YF
Sbjct: 109 FFPSE----FG----NDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYF 160
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
LR + + +I G DG ++
Sbjct: 161 ------------------LRSLAQAGLTAPPRDKVVILG-----------DGNARVVFVK 191
Query: 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
D+ + A+ + + +Y S+ E V +K ++ Y+
Sbjct: 192 EEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 6e-08
Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 30/180 (16%)
Query: 33 SPDSNSTKAFPRHEPGVTHVLVTGGAGYIGSHAALRLL-KDSYRVT-IVDNLSRGNMGAV 90
+S + + + +VL+ G G I H +L K + + T ++
Sbjct: 7 HHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK------ 60
Query: 91 KVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHN 150
+ + +P Q I D+ + A+ + D V +A +
Sbjct: 61 --IHKPYPT--NSQIIMGDVLNHAALKQAMQ--GQDIV--YANLTGEDLDIQ-------- 104
Query: 151 ITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDII 210
++ AM A VK LI+ + Y E + + I K + + D I
Sbjct: 105 ----ANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAV--IGEPLKPFRRAADAI 158
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-08
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNMGAVKVLQELFPQP----GQ 102
L+TG G GS+ A LL+ Y V N R + ++ P +
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTER--------VDHIYQDPHTCNPK 56
Query: 103 LQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITS-NTLVILEA 161
Y DL D + +I E D V + A+++V S P Y ++ + TL +LEA
Sbjct: 57 FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESP-EYTADVDAMGTLRLLEA 115
Query: 162 MAAHKV--KTLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAK 203
+ + KT Y +ST YG ++P E+TP P +PY AK
Sbjct: 116 IRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 30/204 (14%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
++ + G AG I LL + +T+ R + ++ I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITL---YGR---QLKTRIPPEIIDHERVTVIEGS 60
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ + + + V F G I++A++ ++
Sbjct: 61 FQNPGXLEQAVT--NAEVV--FVGAMESGSDMAS--------------IVKALSRXNIRR 102
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
+I S GE + + T Y + ++ + +++ + +N+ ILR +
Sbjct: 103 VIGVSMAGLSGEFPV-ALEKWTFDNLPISYVQGERQARNVL----RESNLNYTILRLTWL 157
Query: 230 IGSDPEGRLGEAPHPELREHGRIS 253
P ++S
Sbjct: 158 YNDPEXTDYELIPEGAQFNDAQVS 181
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNMGAVKVLQELFPQP-----G 101
L+TG G GS+ A LL+ Y V + N R ++ L+ P G
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR--------IEHLYKNPQAHIEG 79
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITS-NTLVILE 160
++ Y DL D+ + KI E + + A ++V S Y ++ TL +L+
Sbjct: 80 NMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLA-EYTADVDGVGTLRLLD 138
Query: 161 AMAAHKV--KTLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAK 203
A+ + Y +ST YG+ ++P E+TP P +PYG AK
Sbjct: 139 AVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAK 184
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 27/83 (32%)
Query: 310 YNVGTGKGRSVKEFVEACKKATGVNIK-------------------VEYLSR--RPGDYA 348
+ + TG+ SV+EFVE G I V + RP
Sbjct: 272 FVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRP---T 328
Query: 349 EVYS---DPSKIRDELNWTARFT 368
EV D +K + +LNW R
Sbjct: 329 EVDFLQGDCTKAKQKLNWKPRVA 351
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 49/296 (16%), Positives = 92/296 (31%), Gaps = 54/296 (18%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAV--KVLQELFPQPGQLQFIY 107
+ VL+ GG GYIG + + + L R + + KV L+ + + I
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYV---LFRPEVVSNIDKVQMLLYFKQLGAKLIE 61
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
A L D + + + D V+ S L H+I ++ A +
Sbjct: 62 ASLDDHQRLVDALKQ--VDVVI----------SALAGGVLSHHILEQLKLVEAIKEAGNI 109
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDII--IDFSKTTNMAVMILR 225
K + S + +P + K+ I T + M
Sbjct: 110 KRFLPSEFGMDPDIMEH-------ALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAG 162
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
YF GS + P + +I G DG +
Sbjct: 163 YF--AGSLAQLDGHMMP---------------PRDKVLIYG-----------DGNVKGIW 194
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
+D D+ + ++ + + +Y S KE ++ ++ + N+ Y+S
Sbjct: 195 VDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLV G G + + L + + R N L+E G + A+L
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVA---MVR-NEEQGPELRER----GASDIVVANLE 75
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + A + DAV+ FAA + + + ++ +K I
Sbjct: 76 EDFSH----AFASIDAVV-FAAGSGPHTGADKTILIDLWGAIK---TIQEAEKRGIKRFI 127
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
S+ T +PD+ P+ + Y AK++++D + K +++ I+R
Sbjct: 128 MVSSVGT-VDPDQGPM-------NMRHYLVAKRLADDEL----KRSSLDYTIVR 169
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 8e-07
Identities = 31/263 (11%), Positives = 61/263 (23%), Gaps = 62/263 (23%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
V + G +G G +L+ +VT+ + R + L + D
Sbjct: 21 VFILGASGETGRVLLKEILEQGLFSKVTL---IGR------RKLTFDEEAYKNVNQEVVD 71
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
F D +R + E A K
Sbjct: 72 FEKLDDYASAF--QGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLK---SAELAKAGGCKH 126
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIID--FSKTTNMAVMILRYF 227
S+ Y + K E + + F + + + R
Sbjct: 127 FNLLSSKGADK-------------SSNFLYLQVKGEVEAKVEELKFDRYS-----VFRPG 168
Query: 228 NVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
++ E R GE R L ++ +
Sbjct: 169 VLLCDRQESRPGEW-----------------LVRKFFGSLPDSWASGHS---------VP 202
Query: 288 VTDLVDAHVLALANAKPGKVGIY 310
V +V A + + + ++ +
Sbjct: 203 VVTVVRAMLNNVVRPRDKQMELL 225
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 8e-07
Identities = 40/290 (13%), Positives = 87/290 (30%), Gaps = 51/290 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+ G G+IG A L I+ + K+ + L + +Y +
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL--EDKGAIIVYGLIN 70
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ +A+ KI E+ D V+ ST+ +I ++ A +K +
Sbjct: 71 EQEAMEKILKEHEIDIVV----------STVGG----ESILDQIALVKAMKAVGTIKRFL 116
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
S + + P +P + K+ ++ + + + +
Sbjct: 117 PSEFG--------HDVNRADPVEPGLNMYREKRRVRQLV----EESGIPFTYI----CCN 160
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
S HP S I G DG ++ TD+
Sbjct: 161 SIASWPYYNNIHP--------SEVLPPTDFFQIYG-----------DGNVKAYFVAGTDI 201
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
+ + + + ++ + ++ E +K G + ++
Sbjct: 202 GKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVT 251
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 9e-07
Identities = 37/292 (12%), Positives = 81/292 (27%), Gaps = 59/292 (20%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+ +L+ GG GYIG+H LK + + +R N +L E Q + +
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYV---FTRPNSSKTTLLDEF--QSLGAIIVKGE 66
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L + + + ++ + D V +A+A+ + + A +K
Sbjct: 67 LDEHEKLVELMKK--VDVV--ISALAFPQILDQFKI------------LEAIKVAGNIKR 110
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
+ S +G + P + K+M I + N+ +
Sbjct: 111 FLPSD----FG----VEEDRINALPPFEALIERKRMIRRAI----EEANIPYTYV----S 154
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+ P + + G G
Sbjct: 155 ANCFASYFINYLLRPYDPKD-----------EITVYG-----------TGEAKFAMNYEQ 192
Query: 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
D+ + + + + + + E + +K G K ++
Sbjct: 193 DIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 43/297 (14%), Positives = 76/297 (25%), Gaps = 60/297 (20%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
+L+ G G IG H +K +V K Q + +
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG 62
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ D + + K + D V A + + I A VK
Sbjct: 63 DINDHETLVKAIKQ--VDIV--ICAAGRLLIEDQVKI------------IKAIKEAGNVK 106
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDII--IDFSKTTNMAVMILRY 226
S +G + + +P+ + K +I T Y
Sbjct: 107 KFFPSE----FG----LDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGY 158
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG--IIPGLKIRGTDYNTADGTCVRD 284
F L + D R +I G DG
Sbjct: 159 F----------LRNLAQLDA----------TDPPRDKVVILG-----------DGNVKGA 187
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
Y+ D+ + A + ++ + E + +K G ++ Y+S
Sbjct: 188 YVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 40/230 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTG +G G +L + S + G V+ Q G+ D+
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKFVAK--------GLVRSAQGKEKIGGEADVFIGDIT 58
Query: 112 DAKAVNKIFAENAFDAV------MHFAAVAYVGESTLEPLRYYHNITSNTLV-------I 158
DA ++N F DA+ + + P + + V
Sbjct: 59 DADSINPAFQ--GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQ 116
Query: 159 LEAMAAHKVKTLIY-SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT 217
++A VK ++ S T + + K+ +E + D +
Sbjct: 117 IDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNG-------NILVWKRKAEQYLAD----S 165
Query: 218 NMAVMILR---YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII 264
I+R + G E +G+ + + A D A I
Sbjct: 166 GTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRA--DVAEVCI 213
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 34/167 (20%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
L+TG +G +G RLL + + V V N S G +L DL
Sbjct: 3 TLITGASGQLG-IELSRLLSERHEVIKVYNSSEIQGG-----YKL------------DLT 44
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEP-LRYYHNITSNTLVILEAMAAHKVKTL 170
D + + D +++ AA+ V + +E Y N + I+ A +
Sbjct: 45 DFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEA-VRHIVRAGKVIDSY-I 102
Query: 171 IYSSTCATYGEPD------KMPITESTPQKPINPYGKAKKMSEDIII 211
++ ST D K E PIN YG +K + E +
Sbjct: 103 VHIST-------DYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFAL 142
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 8e-05
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+VTGGA IG + +L D + + + D L + A + ++ + + F+ D+
Sbjct: 5 AMVTGGAQGIGRGISEKLAADGFDIAVAD-LPQQEEQAAETIKLIEAADQKAVFVGLDVT 63
Query: 112 DAKAVNKIFAE 122
D + E
Sbjct: 64 DKANFDSAIDE 74
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 34/150 (22%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
V +TG G +G +L + V L R + F P
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVIQ---LVRKEPKP----GKRFWDPLN-------- 193
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEP--LRYYHNI----TSNTLVILEAMA- 163
+ D ++H A GE + I T + E +A
Sbjct: 194 ------PASDLLDGADVLVHLA-----GEPIFGRFNDSHKEAIRESRVLPTKFLAELVAE 242
Query: 164 AHKVKTLIYSSTCATYG-EPDKMPITESTP 192
+ + T+I +S YG + +TE +
Sbjct: 243 STQCTTMISASAVGFYGHDRGDEILTEESE 272
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
H L+T G +G +LL Y VT+ + + + +LQF+ AD+
Sbjct: 9 HALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTT--AMETMKETYKDVEERLQFVQADV 66
Query: 111 GDAKAVNKIFAE 122
+ ++KI E
Sbjct: 67 TKKEDLHKIVEE 78
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+++ GG +G+ A +S + + + ++ + A K+ EL Q ++ +DL
Sbjct: 14 IVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLS 73
Query: 112 DAKAVNKIF--AENAF 125
+ + V K+F AE F
Sbjct: 74 NEEEVAKLFDFAEKEF 89
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} Length = 511 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNM---GAVKVLQELFPQPGQLQFIY 107
VL+TGG G IG A RL + ++ SR GA ++ +EL ++
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVL--TSRRGPEAPGAAELAEELRGHGCEVVHAA 318
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAV 134
D+ + A+ + +AV H A +
Sbjct: 319 CDVAERDALAALVTAYPPNAVFHTAGI 345
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
LVTG IG A RL K+ RV + RG G L+EL + D+
Sbjct: 24 VALVTGATSGIGLEIARRLGKEGLRVFVCA---RGEEGLRTTLKELREAGVEADGRTCDV 80
Query: 111 GDAKAVNKIFAE 122
+ + A
Sbjct: 81 RSVPEIEALVAA 92
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V++TG + IG A+ ++ VTI S +++ + Q+ + AD+
Sbjct: 9 VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 68
Query: 112 DAKAVNKIFAE 122
++I
Sbjct: 69 TEDGQDQIINS 79
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 13/72 (18%), Positives = 18/72 (25%), Gaps = 3/72 (4%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VTG + IG A L V R + L + D+
Sbjct: 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCA---RDAKNVSAAVDGLRAAGHDVDGSSCDV 82
Query: 111 GDAKAVNKIFAE 122
V+ A
Sbjct: 83 TSTDEVHAAVAA 94
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VTGG G IG+ RL KD +RV + VK L++ ++G
Sbjct: 16 AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSP--RRVKWLEDQKALGFDFYASEGNVG 73
Query: 112 DAKAVNKIFAE 122
D + + F +
Sbjct: 74 DWDSTKQAFDK 84
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+VTGG IG A L + + I G V+ EL ++ F+ ADL
Sbjct: 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAE--GVAPVIAELSGLGARVIFLRADLA 89
Query: 112 DAKAVNKIFAE 122
D +
Sbjct: 90 DLSSHQATVDA 100
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 15/71 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LV GG+G +G+ S+ +D P
Sbjct: 25 ILVLGGSGALGAEVVKFFKSKSWNTISID---------------FRENPNADHSFTIKDS 69
Query: 112 DAKAVNKIFAE 122
+ + + +
Sbjct: 70 GEEEIKSVIEK 80
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 19/71 (26%), Positives = 28/71 (39%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTGG IG A L+ V IV GAV+ L+ L G +++ D+
Sbjct: 14 YLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDIT 73
Query: 112 DAKAVNKIFAE 122
+ +
Sbjct: 74 NEDETARAVDA 84
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VTGG G +G+ + RL V + + S N L + D+
Sbjct: 28 AFVTGGMGGLGAAISRRLHDAGMAVAV--SHSERNDHVSTWLMHERDAGRDFKAYAVDVA 85
Query: 112 DAKAVNKIFAE 122
D ++ + +
Sbjct: 86 DFESCERCAEK 96
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TG + IG A + +V + + + + + G F ADL
Sbjct: 10 VLITGSSQGIGLATARLFARAGAKVGLHGRKAPA--NIDETIASMRADGGDAAFFAADLA 67
Query: 112 DAKAVNKIFAE 122
++A ++ E
Sbjct: 68 TSEACQQLVDE 78
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG + IG AL+L ++ Y V + N + A V++E+ + I A++
Sbjct: 7 ALVTGASRGIGRSIALQLAEEGYNVAV--NYAGSKEKAEAVVEEIKAKGVDSFAIQANVA 64
Query: 112 DAKAVNKIFAE 122
DA V + E
Sbjct: 65 DADEVKAMIKE 75
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG A IG A LL +V +VD + L E F +P + FI D+
Sbjct: 10 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVA 68
Query: 112 DAKAVNKIFAE 122
D + + F +
Sbjct: 69 DQQQLRDTFRK 79
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.98 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.96 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.96 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.96 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.96 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.96 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.95 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.95 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.94 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.94 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.94 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.94 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.93 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.93 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.93 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.93 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.93 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.93 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.93 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.93 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.93 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.93 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.93 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.93 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.93 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.93 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.92 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.92 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.92 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.92 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.92 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.92 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.92 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.92 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.92 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.92 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.92 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.92 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.92 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.92 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.92 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.92 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.92 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.92 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.92 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.92 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.92 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.92 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.92 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.92 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.92 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.91 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.91 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.91 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.91 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.91 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.91 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.91 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.91 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.91 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.91 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.91 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.91 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.91 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.91 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.91 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.91 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.91 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.91 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.91 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.91 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.91 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.91 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.91 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.91 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.91 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.91 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.91 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.91 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.91 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.91 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.91 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.91 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.91 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.91 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.91 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.91 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.91 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.91 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.91 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.91 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.9 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.9 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.9 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.9 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.9 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.9 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.9 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.9 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.9 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.9 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.9 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.9 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.9 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.9 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.9 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.9 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.9 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.9 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.9 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.9 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.9 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.9 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.9 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.9 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.9 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.9 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.9 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.9 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.9 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.9 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.9 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.9 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.9 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.9 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.9 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.9 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.9 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.9 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.9 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.9 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.89 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.89 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.89 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.89 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.89 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.89 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.89 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.89 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.89 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.89 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.89 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.89 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.89 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.89 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.89 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.89 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.89 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.89 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.89 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.89 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.89 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.88 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.88 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.88 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.88 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.88 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.88 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.88 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.88 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.88 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.88 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.88 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.88 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.88 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.88 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.88 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.88 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.88 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.88 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.88 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.88 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.88 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.87 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.87 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.87 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.87 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.87 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.87 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.87 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.86 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.86 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.86 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.86 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.85 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.85 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.85 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.84 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.84 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.84 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.84 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.83 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.83 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.83 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.83 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.83 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.82 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.82 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.82 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.82 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.82 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.81 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.81 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.8 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.8 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.79 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.78 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.78 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.77 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.74 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.72 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.7 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.69 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.66 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.61 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.55 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.53 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.52 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.52 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.51 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.5 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.48 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.42 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.23 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.22 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.15 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.05 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.91 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.86 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.76 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.75 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.7 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.69 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.65 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.61 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.6 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.59 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.52 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.5 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.44 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.41 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.4 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.31 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.29 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.15 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.1 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.04 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.96 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.94 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.92 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.88 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.82 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.8 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.8 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.71 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.7 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.62 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.62 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.59 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.56 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.55 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.54 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.53 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.53 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.52 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.49 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.46 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.46 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.45 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.45 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.45 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.43 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.4 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.38 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.36 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.35 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.32 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.32 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.31 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.29 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.29 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.27 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.25 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.25 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.25 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.22 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.22 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.21 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.21 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.2 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.18 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.17 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.16 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.16 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.15 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.14 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.14 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.12 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.12 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.1 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.09 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.09 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.08 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.07 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.03 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.03 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.01 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.0 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.97 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.95 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.94 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.94 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.94 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.94 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.93 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.92 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 96.91 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.91 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.9 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.89 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.88 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.88 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.87 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.87 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.85 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.84 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.83 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.82 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.82 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.8 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.78 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 96.78 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.76 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.75 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.75 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.75 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.74 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.74 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.7 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.7 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.7 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.69 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.69 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.68 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.66 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.65 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.62 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.6 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.58 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.57 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.56 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.54 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.53 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.52 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 96.49 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.46 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 96.44 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.44 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.42 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.41 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 96.4 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.39 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.39 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 96.37 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.35 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.34 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.34 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 96.34 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.31 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.31 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.31 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.3 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.29 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.29 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.28 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.26 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.26 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.25 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.25 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.24 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.23 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.22 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.21 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.19 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.17 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.16 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.08 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.07 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.07 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.05 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.02 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.0 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.99 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 95.98 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 95.98 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 95.97 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.91 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.91 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 95.9 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 95.89 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.88 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.88 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.88 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.88 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.87 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.87 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 95.86 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.84 |
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-51 Score=384.66 Aligned_cols=336 Identities=38% Similarity=0.650 Sum_probs=286.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|||||||||||++|+++|+++|++|++++|.........+.+.... ..++.++.+|+.|++++.++++..++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT--GKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH--SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc--CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 35799999999999999999999999999999987665544444443322 2478999999999999999997669999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|||+|+..........+...++.|+.++.+++++|++.+++++||+||.++||.....+++|+.+..|.++|+.+|..+|
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAE 161 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHHHH
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999987655455677789999999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHhhCC-CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 208 DIIIDFSKTTN-MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 208 ~~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
.+++.++.+.+ ++++++||+++|||+..+.++..+... .+.+++.+.+......+.+.++|..+.++++++.++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 238 (341)
T 3enk_A 162 QILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGI---PNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 238 (341)
T ss_dssp HHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSS---CSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEE
T ss_pred HHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccC---ccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeE
Confidence 99999988765 999999999999998766555433211 12567777776666544488888877888999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCce
Q 016208 287 DVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTA 365 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 365 (393)
|++|+|++++.+++... ...+++||+++++.+|+.|+++.+.+.+|.+.++...+....+.....+|++|+++.|||+|
T Consensus 239 ~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 318 (341)
T 3enk_A 239 HVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKA 318 (341)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHCCCC
T ss_pred EHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcCCCC
Confidence 99999999999998621 12247999999999999999999999999998888888777788889999999999999999
Q ss_pred eccCHHHHHHHHHHHHHhccCCCC
Q 016208 366 RFTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 366 ~~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
++ +++|+|+++++||+++..+|.
T Consensus 319 ~~-~l~~~l~~~~~~~~~~~~~~~ 341 (341)
T 3enk_A 319 ER-DLERMCADHWRWQENNPRGFV 341 (341)
T ss_dssp CC-CHHHHHHHHHHHHHHSTTSCC
T ss_pred CC-CHHHHHHHHHHHHHhcCccCC
Confidence 99 899999999999999988763
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-51 Score=385.01 Aligned_cols=321 Identities=24% Similarity=0.398 Sum_probs=264.2
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
+.+.+.||+|||||||||||++|+++|+++| ++|++++|...... ...+..+.. ..++.++.+|+.|.+++.+++
T Consensus 18 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~ 94 (346)
T 4egb_A 18 LYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQD-HPNYYFVKGEIQNGELLEHVI 94 (346)
T ss_dssp ------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHH
T ss_pred cccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhcc-CCCeEEEEcCCCCHHHHHHHH
Confidence 3445677999999999999999999999999 78888877542221 122222221 258999999999999999999
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC-CCCCCCCCCCCCCCChH
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP-DKMPITESTPQKPINPY 199 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~p~~~Y 199 (393)
+..++|+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.++||.. ...+++|+++..|.++|
T Consensus 95 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y 174 (346)
T 4egb_A 95 KERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPY 174 (346)
T ss_dssp HHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHH
T ss_pred hhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChh
Confidence 65569999999998766556677888999999999999999999999999999999999986 45689999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 279 (393)
+.+|..+|++++.++.+.|++++++||+.||||+.... .+++.++..+..+.+ +.+.| ++
T Consensus 175 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~ 234 (346)
T 4egb_A 175 SSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-------------KLIPLMVTNALEGKK-LPLYG------DG 234 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------------SHHHHHHHHHHTTCC-CEEET------TS
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-------------chHHHHHHHHHcCCC-ceeeC------CC
Confidence 99999999999999988899999999999999975421 677888888888887 77777 88
Q ss_pred ccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCCCCCCcceecCHHHHH
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDYAEVYSDPSKIR 358 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~ 358 (393)
++.++|+|++|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.+ +...+........+.+|++|++
T Consensus 235 ~~~~~~i~v~Dva~a~~~~~~~~~~--g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~ 312 (346)
T 4egb_A 235 LNVRDWLHVTDHCSAIDVVLHKGRV--GEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMK 312 (346)
T ss_dssp CCEECEEEHHHHHHHHHHHHHHCCT--TCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHH
T ss_pred CeEEeeEEHHHHHHHHHHHHhcCCC--CCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHH
Confidence 9999999999999999999997663 379999999999999999999999998876 4555555556667889999999
Q ss_pred hhCCCceeccCHHHHHHHHHHHHHhccCCCC
Q 016208 359 DELNWTARFTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 359 ~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
+.|||+|++ +++|+|+++++||+++.+++.
T Consensus 313 ~~lG~~p~~-~~~e~l~~~~~~~~~~~~~~~ 342 (346)
T 4egb_A 313 NEFDWEPKY-TFEQGLQETVQWYEKNEEWWK 342 (346)
T ss_dssp HHHCCCCCC-CHHHHHHHHHHHHHHCHHHHG
T ss_pred HHcCCCCCC-CHHHHHHHHHHHHHhhhhhhh
Confidence 999999999 899999999999999876654
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=377.77 Aligned_cols=328 Identities=40% Similarity=0.704 Sum_probs=274.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|||||||||||++|+++|+++|++|++++|...... + .+ ..+++++.+|+.+.+++.++++..++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~---~~---~~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---D---AI---TEGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---G---GS---CTTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---h---hc---CCCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 689999999999999999999999999999998544322 1 11 13788999999999999999954589999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+......+..++...+++|+.++.+++++|++.+++++||+||.++|+.....+++|+++..|.++|+.+|..+|.
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~ 151 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEK 151 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHHH
Confidence 99999765433345677899999999999999999999999999999999998777789999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
+++.++.+.+++++++||+++|||+..+.+|+..... ..+++.+.+......+.+.++|..+.++++++.++|+|+
T Consensus 152 ~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v 227 (330)
T 2c20_A 152 MLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPE----THLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHV 227 (330)
T ss_dssp HHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSC----CSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEH
T ss_pred HHHHHHHHhCCcEEEEecCcccCCCCcCccccccccc----cchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeH
Confidence 9999988889999999999999998665554432111 156777777666544337787766666678899999999
Q ss_pred HHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceec
Q 016208 289 TDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARF 367 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 367 (393)
+|+|++++.+++.+.. ..+++||+++++.+|+.|+++.+.+.+|.+.+....+....+.....+|++|+++.|||+|++
T Consensus 228 ~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 307 (330)
T 2c20_A 228 EDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRY 307 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSC
T ss_pred HHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCcc
Confidence 9999999999986432 224799999999999999999999999998887766665666667889999999999999997
Q ss_pred cCHHHHHHHHHHHHHhccCCCC
Q 016208 368 TDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 368 ~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
++++|+|+++++||+++.++|.
T Consensus 308 ~~l~~~l~~~~~~~~~~~~~~~ 329 (330)
T 2c20_A 308 VNVKTIIEHAWNWHQKQPNGYE 329 (330)
T ss_dssp CCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCHHHHHHHHHHHHHHhhhccC
Confidence 6799999999999999988875
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-51 Score=385.71 Aligned_cols=321 Identities=24% Similarity=0.384 Sum_probs=270.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCC--CccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQP--GQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+.+|+|||||||||||++|+++|+++|++|++++|...........+....... .+++++.+|+.|.+++.+++ .+
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~ 100 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM--KG 100 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT--TT
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh--cC
Confidence 345899999999999999999999999999999997654443333333221100 47899999999999999999 69
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
+|+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.++||.....+++|+++..|.++|+.+|.
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 180 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKY 180 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHH
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHH
Confidence 99999999986655556678889999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.+|++++.++.+.|++++++||++||||+..... ..+.+++.++..+..+.+ +.+.| ++++.++
T Consensus 181 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~g------~g~~~~~ 244 (351)
T 3ruf_A 181 VNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNG---------AYAAVIPKWTAAMLKGDD-VYING------DGETSRD 244 (351)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCS---------TTCCHHHHHHHHHHHTCC-CEEES------SSCCEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCc---------chhhHHHHHHHHHHcCCC-cEEeC------CCCeEEe
Confidence 9999999999888999999999999999754321 011567778888888877 77777 8899999
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCC-----cceEEccCCCCCCcceecCHHHHHh
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-----IKVEYLSRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-----~~~~~~~~~~~~~~~~~~d~~k~~~ 359 (393)
|+|++|+|++++.+++.+....+++||+++++.+|+.|+++.+.+.+|.+ .+....+..........+|++|+++
T Consensus 245 ~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 324 (351)
T 3ruf_A 245 FCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAID 324 (351)
T ss_dssp CEEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHH
T ss_pred eEEHHHHHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHH
Confidence 99999999999999987322345799999999999999999999999983 3333444455566778899999999
Q ss_pred hCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 360 ELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
.|||+|++ +++++|+++++||+++.+
T Consensus 325 ~lG~~p~~-~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 325 LLKYRPNI-KIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp HHCCCCCC-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCC-CHHHHHHHHHHHHHHhhc
Confidence 99999999 899999999999998754
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=369.12 Aligned_cols=335 Identities=40% Similarity=0.677 Sum_probs=275.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC------CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG------NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
+|+|||||||||||++|+++|+++|++|++++|..+. .....+.+.... ..++.++.+|+.+.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHh
Confidence 3799999999999999999999999999999986443 222222222211 24789999999999999999954
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHH
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGK 201 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~ 201 (393)
.++|+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.++||.....+++|+++..| .++|+.
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~ 159 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGK 159 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHH
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCchHH
Confidence 4899999999976543334567789999999999999999999999999999999999877778999999888 899999
Q ss_pred HHHHHHHHHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh-CCCCceeEcCccccCCCC
Q 016208 202 AKKMSEDIIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR-GIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 202 sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~g 279 (393)
+|..+|.+++.++.+ .+++++++||+++|||+..+.+++.+... .+.+++.+...+. .+.+ +.++|..+.++++
T Consensus 160 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g 235 (348)
T 1ek6_A 160 SKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGI---PNNLMPYVSQVAIGRREA-LNVFGNDYDTEDG 235 (348)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSS---CCSHHHHHHHHHHTSSSC-EEEECSCSSSSSS
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccc---hhhHHHHHHHHHHhcCCC-eEEeCCcccCCCC
Confidence 999999999999876 23999999999999997655555432210 1157777777777 4555 8888766666678
Q ss_pred ccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHH
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIR 358 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 358 (393)
++.++|+|++|+|++++.+++.+. ...+++||+++++.+|+.|+++.+.+.+|.+.+....+....+.....+|++|++
T Consensus 236 ~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 315 (348)
T 1ek6_A 236 TGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQ 315 (348)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHH
T ss_pred ceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHHHH
Confidence 999999999999999999998653 2223799999999999999999999999998877766666666677889999999
Q ss_pred hhCCCceeccCHHHHHHHHHHHHHhccCCCCC
Q 016208 359 DELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390 (393)
Q Consensus 359 ~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 390 (393)
+.|||+|++ +++++|+++++||+++...|..
T Consensus 316 ~~lG~~p~~-~l~~~l~~~~~w~~~~~~~~~~ 346 (348)
T 1ek6_A 316 EELGWTAAL-GLDRMCEDLWRWQKQNPSGFGT 346 (348)
T ss_dssp HTTCCCCCC-CHHHHHHHHHHHHHHCTTCSCC
T ss_pred HhcCCCCCC-CHHHHHHHHHHHHHhccccccc
Confidence 999999999 8999999999999999877654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-49 Score=365.73 Aligned_cols=295 Identities=19% Similarity=0.305 Sum_probs=260.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|||||||||||++|+++|+++|++|++++|. ..... + .+++++.+|+. .+++.+++ .++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~----~-------~~~~~~~~Dl~-~~~~~~~~--~~~d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS-IGNKA----I-------NDYEYRVSDYT-LEDLINQL--NDVDAV 66 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-CC----------------CCEEEECCCC-HHHHHHHT--TTCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC-CCccc----C-------CceEEEEcccc-HHHHHHhh--cCCCEE
Confidence 4799999999999999999999999999999996 22211 1 27899999999 99999999 699999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+..... ++...+++|+.++.+++++|++.++++|||+||.++||.....+++|+++..|.++|+.+|..+|+
T Consensus 67 ih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 142 (311)
T 3m2p_A 67 VHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEH 142 (311)
T ss_dssp EECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Confidence 9999986543 667788999999999999999999999999999999998887899999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
+++.++.+.+++++++||+.+|||+..+. .++..++..+..+.+ +.+.| ++++.++|+|+
T Consensus 143 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~g------~~~~~~~~v~v 202 (311)
T 3m2p_A 143 IGNIYSRKKGLCIKNLRFAHLYGFNEKNN-------------YMINRFFRQAFHGEQ-LTLHA------NSVAKREFLYA 202 (311)
T ss_dssp HHHHHHHHSCCEEEEEEECEEECSCC--C-------------CHHHHHHHHHHTCCC-EEESS------BCCCCEEEEEH
T ss_pred HHHHHHHHcCCCEEEEeeCceeCcCCCCC-------------CHHHHHHHHHHcCCC-eEEec------CCCeEEceEEH
Confidence 99999988999999999999999975421 467788888888887 78777 78999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccC-CCCCCcceecCHHHHHhhCCCceec
Q 016208 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR-RPGDYAEVYSDPSKIRDELNWTARF 367 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~ 367 (393)
+|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.++...+. .........+|++|+++.|||+|++
T Consensus 203 ~Dva~a~~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 280 (311)
T 3m2p_A 203 KDAAKSVIYALKQEKV--SGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDY 280 (311)
T ss_dssp HHHHHHHHHHTTCTTC--CEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSC
T ss_pred HHHHHHHHHHHhcCCC--CCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCccc
Confidence 9999999999987653 479999999999999999999999999988877776 6667778899999999999999999
Q ss_pred cCHHHHHHHHHHHHHhcc
Q 016208 368 TDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 368 ~~~~e~l~~~~~~~~~~~ 385 (393)
+++++|+++++|++++.
T Consensus 281 -~~~~~l~~~~~~~~~~~ 297 (311)
T 3m2p_A 281 -NFATAVEEIHLLMRGLD 297 (311)
T ss_dssp -CHHHHHHHHHHHHCC--
T ss_pred -CHHHHHHHHHHHHHhcc
Confidence 89999999999998763
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-48 Score=365.24 Aligned_cols=334 Identities=40% Similarity=0.672 Sum_probs=270.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+++|++|++++|..+......+.+.... ..++.++.+|+.+++++.++++..++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 589999999999999999999999999999875443322222222211 146789999999999999999655799999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAKKMSED 208 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~sK~~~E~ 208 (393)
|+||.........++...+++|+.++.+++++|++.+++++|++||.++||.....+++|+.+..| .++|+.+|..+|.
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 158 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQ 158 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHH
Confidence 999976443334466778999999999999999998989999999999999877778899888765 8899999999999
Q ss_pred HHHHHHhhC-CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 209 IIIDFSKTT-NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 209 ~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+++.++.+. +++++++||+++|||.+.+.+|+.+... ...+++.+........+.+.++|..+..++|++.++|+|
T Consensus 159 ~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 235 (338)
T 1udb_A 159 ILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGI---PNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSS---CCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEE
T ss_pred HHHHHHHhcCCCceEEEeeceecCCCcccccccccccc---hhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEE
Confidence 999998776 8999999999999997655555432210 115667776666633333777775555667889999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCcee
Q 016208 288 VTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTAR 366 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 366 (393)
++|+|++++.+++... ...+++||+++++++|+.|+++.+.+.+|.+.+....+....+.....+|++|+++.|||+|+
T Consensus 236 v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 315 (338)
T 1udb_A 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCcC
Confidence 9999999999988532 222369999999999999999999999998887766666666666788999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhccCCCC
Q 016208 367 FTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 367 ~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
+ +++|+|+++++|++++..+|+
T Consensus 316 ~-~l~~~l~~~~~w~~~~~~~~~ 337 (338)
T 1udb_A 316 R-TLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_dssp C-CHHHHHHHHHHHHHHCTTCSC
T ss_pred C-CHHHHHHHHHHHHHhcccccC
Confidence 9 899999999999999988876
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=374.38 Aligned_cols=338 Identities=37% Similarity=0.624 Sum_probs=270.5
Q ss_pred cEEEEEcCCChhHHHHHHHHH-HCCCeEEEEeCCCCCC---------chhhhhhhhhcCC--CCc---cEEEEccCCCHH
Q 016208 50 THVLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSRGN---------MGAVKVLQELFPQ--PGQ---LQFIYADLGDAK 114 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~---------~~~~~~~~~~~~~--~~~---~~~~~~Dl~~~~ 114 (393)
|+|||||||||||++|+++|+ ++|++|++++|..... ....+.+..+... ..+ +.++.+|+.+++
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 82 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCHH
Confidence 699999999999999999999 9999999999865432 1111112222111 124 889999999999
Q ss_pred HHHHHHhhCC-CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC-------CCC
Q 016208 115 AVNKIFAENA-FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD-------KMP 186 (393)
Q Consensus 115 ~~~~~~~~~~-~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~-------~~~ 186 (393)
++.+++++.+ +|+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.++|+... ..+
T Consensus 83 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~ 162 (397)
T 1gy8_A 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEP 162 (397)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCCC
T ss_pred HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccccC
Confidence 9999996546 99999999976543334567789999999999999999999999999999999998765 568
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHH-----HHHh
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACF-----DAAR 261 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 261 (393)
++|+++..|.++|+.+|+.+|.+++.++.+.+++++++||++||||+..+.+|+..... ..+++.++ +...
T Consensus 163 ~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~ 238 (397)
T 1gy8_A 163 IDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGS----THLIPIILGRVMSDIAP 238 (397)
T ss_dssp BCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTC----CSHHHHHHHHHHHHHSC
T ss_pred cCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccch----hHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988889999999999999998665554432111 15666665 3333
Q ss_pred CCC----------CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCC----Cc---ceEEecCCCcccHHHHH
Q 016208 262 GII----------PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG----KV---GIYNVGTGKGRSVKEFV 324 (393)
Q Consensus 262 ~~~----------~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~----~~---~~yni~~~~~~s~~el~ 324 (393)
... +.+.++|..+..+++++.++|+|++|+|++++.+++.+... .+ ++||+++++.+|+.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~ 318 (397)
T 1gy8_A 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVI 318 (397)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHH
T ss_pred cCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHHH
Confidence 332 22777775555567889999999999999999999854321 13 69999999999999999
Q ss_pred HHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCCCCC
Q 016208 325 EACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391 (393)
Q Consensus 325 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~~ 391 (393)
+.+.+.+|.+.+....+....+.....+|++|+++.|||+|++++++++|+++++||+++..+|...
T Consensus 319 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~~~~~ 385 (397)
T 1gy8_A 319 EVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYASQ 385 (397)
T ss_dssp HHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC--
T ss_pred HHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccccCcc
Confidence 9999999998877766655566677889999999999999997679999999999999998777654
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=363.43 Aligned_cols=301 Identities=27% Similarity=0.393 Sum_probs=254.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+++|++|++++|......... ..+++++.+|+.|.+ +.+++ .+ |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~Dl~d~~-~~~~~--~~-d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---------NPSAELHVRDLKDYS-WGAGI--KG-DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS---------CTTSEEECCCTTSTT-TTTTC--CC-SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc---------CCCceEEECccccHH-HHhhc--CC-CEEE
Confidence 68999999999999999999999999999988654432111 257899999999998 88877 45 9999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+......+..++...+++|+.++.+++++|++.+++++||+||.++||.....+++|+.+..|.++|+.+|..+|.+
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~ 147 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVM 147 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 99997665556778888999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++.++.+.|++++++||+++|||+... .++..++..+..+...+.+.| ++++.++|+|++
T Consensus 148 ~~~~~~~~g~~~~~lrp~~v~g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~i~v~ 207 (312)
T 3ko8_A 148 CATYARLFGVRCLAVRYANVVGPRLRH--------------GVIYDFIMKLRRNPNVLEVLG------DGTQRKSYLYVR 207 (312)
T ss_dssp HHHHHHHHCCEEEEEEECEEECTTCCS--------------SHHHHHHHHHHHCTTEEEEC----------CEECEEEHH
T ss_pred HHHHHHHhCCCEEEEeeccccCcCCCC--------------ChHHHHHHHHHhCCCCeEEcC------CCCeEEeeEEHH
Confidence 999998889999999999999997542 455555665555533366777 889999999999
Q ss_pred HHHHHHHHHHhc---CCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccC------CCCCCcceecCHHHHHhh
Q 016208 290 DLVDAHVLALAN---AKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR------RPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 290 Dva~a~~~~l~~---~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k~~~~ 360 (393)
|+|++++.+++. +.. .+++||+++++.+|+.|+++.+.+.+|.+.++...+. ++.+.....+|++|+++.
T Consensus 208 Dva~a~~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 286 (312)
T 3ko8_A 208 DAVEATLAAWKKFEEMDA-PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKL 286 (312)
T ss_dssp HHHHHHHHHHHHHHHSCC-SEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHH
T ss_pred HHHHHHHHHHHhccccCC-CCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHH
Confidence 999999999987 332 3479999999999999999999999999887766543 344556788999999999
Q ss_pred CCCceeccCHHHHHHHHHHHHHhcc
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|||+|++ +++|+|+++++|++++.
T Consensus 287 lG~~p~~-~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 287 TGWRPTM-TSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp HCCCCSS-CHHHHHHHHHHHHHHHH
T ss_pred hCCCCCC-CHHHHHHHHHHHHHhhh
Confidence 9999999 89999999999998874
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=363.88 Aligned_cols=305 Identities=28% Similarity=0.464 Sum_probs=249.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|||||||||||++|+++|+++| .|+++++......... ..++.++.+|+.+ +++.+++ .++|+|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~--~~~d~v 67 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYL--KGAEEV 67 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHH--TTCSEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHh--cCCCEE
Confidence 6899999999999999999999999 5555554333222111 2578999999999 8999999 799999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+......+..++...+++|+.++.+++++|++.+++++||+||.++||.....+++|+.+..|.++|+.+|..+|.
T Consensus 68 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~ 147 (313)
T 3ehe_A 68 WHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEA 147 (313)
T ss_dssp EECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred EECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999765555677889999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
+++.++.+.|++++++||++||||+... .++..++..+..+...+.+.| ++++.++|+|+
T Consensus 148 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~--------------~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~i~v 207 (313)
T 3ehe_A 148 LIESYCHTFDMQAWIYRFANVIGRRSTH--------------GVIYDFIMKLKRNPEELEILG------NGEQNKSYIYI 207 (313)
T ss_dssp HHHHHHHHTTCEEEEEECSCEESTTCCC--------------SHHHHHHHHHHHCTTEEEEST------TSCCEECCEEH
T ss_pred HHHHHHHhcCCCEEEEeeccccCcCCCc--------------ChHHHHHHHHHcCCCceEEeC------CCCeEEeEEEH
Confidence 9999999899999999999999997542 455555555555533277777 88999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccC---CCCCCcceecCHHHHHhhCCCce
Q 016208 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR---RPGDYAEVYSDPSKIRDELNWTA 365 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~d~~k~~~~lG~~p 365 (393)
+|+|++++.+++... .+++||+++++++|+.|+++.+.+.+|.+.++...+. +..+.....+|++|++ .|||+|
T Consensus 208 ~Dva~a~~~~~~~~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p 284 (313)
T 3ehe_A 208 SDCVDAMLFGLRGDE--RVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLK-RLGWKP 284 (313)
T ss_dssp HHHHHHHHHHTTCCS--SEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHH-HHTCCC
T ss_pred HHHHHHHHHHhccCC--CCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHH-HcCCCC
Confidence 999999999998332 3479999999999999999999999999877665443 2344456789999995 589999
Q ss_pred eccCHHHHHHHHHHHHHhccCCCCC
Q 016208 366 RFTDLQGSLQIAWRWQKTHINGYGS 390 (393)
Q Consensus 366 ~~~~~~e~l~~~~~~~~~~~~~~~~ 390 (393)
++ +++|+|+++++||+++.+...+
T Consensus 285 ~~-~~~e~l~~~~~~~~~~~~~~~~ 308 (313)
T 3ehe_A 285 RY-NSEEAVRMAVRDLVEDLDEEGH 308 (313)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHC---
T ss_pred CC-CHHHHHHHHHHHHHhCcccccc
Confidence 99 8999999999999998665443
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=365.40 Aligned_cols=320 Identities=26% Similarity=0.382 Sum_probs=261.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC--CCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ--PGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+.||+|||||||||||++|+++|+++|++|++++|...........+...... ..++.++.+|+.+.+++.+++ .+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~ 102 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC--AG 102 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH--TT
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh--cC
Confidence 45689999999999999999999999999999998654322222222111110 147899999999999999999 69
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
+|+|||+|+......+..++...+++|+.++.+++++|.+.++++|||+||.++|+.....+++|+++..|.++|+.+|.
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~ 182 (352)
T 1sb8_A 103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKY 182 (352)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHH
T ss_pred CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHHHHH
Confidence 99999999976443334567788999999999999999999999999999999999877778999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.+|.+++.++.+.+++++++||+.||||...... ....+++.++..+..+.+ +.+.| ++++.++
T Consensus 183 ~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~g------~g~~~~~ 246 (352)
T 1sb8_A 183 VNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNG---------AYAAVIPKWTSSMIQGDD-VYING------DGETSRD 246 (352)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCS---------TTCCHHHHHHHHHHHTCC-CEEES------SSCCEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCc---------chhhHHHHHHHHHHCCCC-cEEeC------CCCceEe
Confidence 9999999998888999999999999999754210 001456666677777776 66666 7889999
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHh---CCCcce--EEccCCCCCCcceecCHHHHHh
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKAT---GVNIKV--EYLSRRPGDYAEVYSDPSKIRD 359 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~---g~~~~~--~~~~~~~~~~~~~~~d~~k~~~ 359 (393)
|+|++|+|++++.+++......+++||+++++.+|+.|+++.+.+.+ |.+.+. ...+..........+|++|+++
T Consensus 247 ~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 326 (352)
T 1sb8_A 247 FCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAK 326 (352)
T ss_dssp CEEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHH
T ss_pred eEEHHHHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHH
Confidence 99999999999998876322234799999999999999999999999 887652 2333334455667899999999
Q ss_pred hCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 360 ELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 360 ~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.|||+|++ +++|+|+++++||+++.
T Consensus 327 ~lG~~p~~-~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 327 LLGYAPKY-DVSAGVALAMPWYIMFL 351 (352)
T ss_dssp HTCCCCCC-CHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCC-CHHHHHHHHHHHHHHhc
Confidence 99999998 89999999999998763
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=361.67 Aligned_cols=304 Identities=18% Similarity=0.182 Sum_probs=257.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+.||+|||||||||||++|+++|+++|+ +... . ...++++.+|+.|++++.++++..++|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~-~-------------~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE-D-------------WVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC-E-------------EEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc-c-------------ccccCceecccCCHHHHHHHHhhcCCC
Confidence 5679999999999999999999999998 1110 0 024445579999999999999766799
Q ss_pred EEEEcccccCc-cCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC----CCCCCC-hHH
Q 016208 127 AVMHFAAVAYV-GESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST----PQKPIN-PYG 200 (393)
Q Consensus 127 ~Vi~~A~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~p~~-~Y~ 200 (393)
+|||+|+.... ..+..++...+++|+.++.+++++|++.++++|||+||.++||.....+++|++ +..|.+ +|+
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 143 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYS 143 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHH
Confidence 99999997542 223567788999999999999999999999999999999999988888999997 666766 699
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH----HhCCCCceeEcCccccC
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA----ARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~ 276 (393)
.+|..+|++++.++++.+++++++||+++|||+...... .+.+++.++.. +..+.+ +.++|
T Consensus 144 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~----- 208 (319)
T 4b8w_A 144 YAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIE---------DGHVLPGLIHKVHLAKSSGSA-LTVWG----- 208 (319)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTT---------TSCHHHHHHHHHHHHHHHTCC-EEEES-----
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCc---------cccccHHHHHHHHHHhccCCc-eEEeC-----
Confidence 999999999999998889999999999999998643211 11456666555 677777 88877
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHH
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSK 356 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 356 (393)
++++.++|+|++|+|++++.+++.+....+++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|++|
T Consensus 209 -~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 287 (319)
T 4b8w_A 209 -TGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSK 287 (319)
T ss_dssp -CSCCEECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHH
T ss_pred -CCCeeEEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHH
Confidence 8999999999999999999999975544457999999999999999999999999998888777666666778899999
Q ss_pred HHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 357 IRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 357 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
+++.|||.|.+ +++|+|+++++||+++.+.
T Consensus 288 ~~~~lg~~p~~-~~~~~l~~~~~~~~~~~~~ 317 (319)
T 4b8w_A 288 LRTYLPDFRFT-PFKQAVKETCAWFTDNYEQ 317 (319)
T ss_dssp HHHHCTTCCCC-CHHHHHHHHHHHHHHSCSS
T ss_pred HHHhcCCCCCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999998 8999999999999998654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=374.16 Aligned_cols=316 Identities=20% Similarity=0.286 Sum_probs=259.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC-CHHHHHHHHhh
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG-DAKAVNKIFAE 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~ 122 (393)
..+.||+|||||||||||++|+++|+++ |++|++++|.......... ..+++++.+|+. +.+.+.+++
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~--------~~~v~~~~~Dl~~d~~~~~~~~-- 89 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK--------HERMHFFEGDITINKEWVEYHV-- 89 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG--------STTEEEEECCTTTCHHHHHHHH--
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc--------CCCeEEEeCccCCCHHHHHHHh--
Confidence 3466799999999999999999999998 9999999986543322111 258999999999 999999999
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-------CC
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-------KP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-------~p 195 (393)
.++|+|||+|+......+..++...+++|+.++.+++++|++.+ ++|||+||.++||.....+++|+++. .|
T Consensus 90 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p 168 (372)
T 3slg_A 90 KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP 168 (372)
T ss_dssp HHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCT
T ss_pred ccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCC
Confidence 58999999999876554556788899999999999999999999 89999999999998877788888765 57
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
.++|+.+|+.+|++++.++.+ ++++++|||++||||+..+.++... ..+.++..++..+..+.+ +.+.|
T Consensus 169 ~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~---- 237 (372)
T 3slg_A 169 RWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKE-----GSSRVVTQFLGHIVRGEN-ISLVD---- 237 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBS-----CSCHHHHHHHHHHHHTCC-EEEGG----
T ss_pred CCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCccccccccc-----ccchHHHHHHHHHHcCCC-cEEeC----
Confidence 779999999999999999887 9999999999999998664332111 112678888888888887 88877
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEccCC----------
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLSRR---------- 343 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~~~---------- 343 (393)
++++.++|+|++|+|++++.+++.+.. ..+++||+++ ++.+|+.|+++.+.+.+|.+.++...+..
T Consensus 238 --~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 3slg_A 238 --GGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGA 315 (372)
T ss_dssp --GGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC----
T ss_pred --CCceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccc
Confidence 789999999999999999999997641 2347999999 48999999999999999876543221110
Q ss_pred -----CCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 344 -----PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 344 -----~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
........+|++|+++.|||+|++ +++++|+++++||+++.
T Consensus 316 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 361 (372)
T 3slg_A 316 YYGNGYQDVQNRVPKIENTMQELGWAPQF-TFDDALRQIFEAYRGHV 361 (372)
T ss_dssp ---------CCCCBCCHHHHHHHTCCCCC-CHHHHHHHHHHHHTTCH
T ss_pred cccCCccccceeecCHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 124456778999999999999999 89999999999998764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=355.43 Aligned_cols=303 Identities=32% Similarity=0.498 Sum_probs=256.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+++|++|++++|...... ..+ ..++.++.+|+.+++++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR---ENV------PKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG---GGS------CTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch---hhc------ccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 58999999999999999999999999999987433221 111 136788999999999999999544899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc-eeecC-CCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC-ATYGE-PDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~-~vyg~-~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|+|+......+..++...+++|+.++.+++++|++.+++++|++||. ++||. ....+++|+++..|.++|+.+|..+|
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~e 151 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFE 151 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHHH
Confidence 99997654333456778899999999999999999999999999998 99987 55568899999889999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc-----CccccCCCCccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR-----GTDYNTADGTCV 282 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~g~~~ 282 (393)
.+++.++++.+++++++||+++|||+..... .+.+++.++..+..+.+ +.++ | ++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~g~~~ 214 (311)
T 2p5y_A 152 HYLSVYGQSYGLKWVSLRYGNVYGPRQDPHG----------EAGVVAIFAERVLKGLP-VTLYARKTPG------DEGCV 214 (311)
T ss_dssp HHHHHHHHHHCCCEEEEEECEEECTTCCSSS----------TTHHHHHHHHHHHHTCC-EEEECSSSTT------SCCCE
T ss_pred HHHHHHHHHcCCCEEEEeeccccCcCCCCCC----------cCcHHHHHHHHHHcCCC-cEEEecccCC------CCCeE
Confidence 9999998888999999999999999754210 01466777777777776 6665 5 78889
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCC
Q 016208 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 362 (393)
++|+|++|+|++++.+++.+ +++||+++++.+|+.|+++.+.+.+|.+.+....+....+.....+|++|+++ ||
T Consensus 215 ~~~i~v~Dva~a~~~~~~~~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg 289 (311)
T 2p5y_A 215 RDYVYVGDVAEAHALALFSL----EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-HG 289 (311)
T ss_dssp ECEEEHHHHHHHHHHHHHHC----CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-TT
T ss_pred EeeEEHHHHHHHHHHHHhCC----CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-CC
Confidence 99999999999999999864 37999999999999999999999999988877666666666778899999999 99
Q ss_pred CceeccCHHHHHHHHHHHHHhc
Q 016208 363 WTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|+|++ +++|+|+++++||+++
T Consensus 290 ~~p~~-~~~~~l~~~~~~~~~~ 310 (311)
T 2p5y_A 290 WRPKV-GFQEGIRLTVDHFRGA 310 (311)
T ss_dssp CCCSS-CHHHHHHHHHHHHHTC
T ss_pred CCCCC-CHHHHHHHHHHHHHhh
Confidence 99999 8999999999999864
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-47 Score=355.89 Aligned_cols=302 Identities=23% Similarity=0.338 Sum_probs=254.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+|+|||||||||||++|+++|+++|++|++++|.... .. + ++.++.+|+.|++++.++++..++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-------l-----~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-------P-----NVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-------T-----TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-------c-----eeeEEECCCCCHHHHHHHHHhcCCC
Confidence 456899999999999999999999999999999986543 10 1 6788999999999999999655699
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCC--CCCCCCCCCCCCCCChHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEP--DKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~--~~~~~~E~~~~~p~~~Y~~sK 203 (393)
+|||+|+......+..++...+++|+.++.+++++|.+. +++++||+||.++||.. ...+++|+++..|.++|+.+|
T Consensus 77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK 156 (321)
T 2pk3_A 77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSK 156 (321)
T ss_dssp EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHH
T ss_pred EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHH
Confidence 999999986544345577889999999999999999876 58899999999999876 566899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC---C--CCceeEcCccccCCC
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG---I--IPGLKIRGTDYNTAD 278 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~g~~~~~~~ 278 (393)
..+|.+++.++.+.|++++++||+++|||+.... .+++.++..+.. + .+ +.+.+ +
T Consensus 157 ~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-------------~~~~~~~~~~~~~~~g~~~~-~~~~~------~ 216 (321)
T 2pk3_A 157 ASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-------------FVTQDFAKQIVDIEMEKQEP-IIKVG------N 216 (321)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-------------SHHHHHHHHHHHHHTTSSCS-EEEES------C
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-------------chHHHHHHHHHHHhcCCCCC-eEEeC------C
Confidence 9999999999888899999999999999975421 345555555544 5 45 66666 7
Q ss_pred CccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc--CCCCCCcceecCHHH
Q 016208 279 GTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS--RRPGDYAEVYSDPSK 356 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~d~~k 356 (393)
++..++++|++|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.++...| ..........+|++|
T Consensus 217 ~~~~~~~v~v~Dva~a~~~~~~~~~~--g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k 294 (321)
T 2pk3_A 217 LEAVRDFTDVRDIVQAYWLLSQYGKT--GDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKR 294 (321)
T ss_dssp SSCEEEEEEHHHHHHHHHHHHHHCCT--TCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHH
T ss_pred CCcEEeeEEHHHHHHHHHHHHhCCCC--CCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHH
Confidence 88899999999999999999987633 37999999999999999999999999887766655 334445678899999
Q ss_pred HHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 357 IRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 357 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+++.|||+|++ +++|+|+++++||+++
T Consensus 295 ~~~~lG~~p~~-~~~e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 295 LKDSTGWKPRI-PLEKSLFEILQSYRQA 321 (321)
T ss_dssp HHHHHCCCCCS-CHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCcCC-CHHHHHHHHHHHHhcC
Confidence 99999999999 8999999999999864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=362.05 Aligned_cols=309 Identities=22% Similarity=0.294 Sum_probs=257.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...+|+|||||||||||++|+++|+++|++|++++|.... .++.++.+|+.|.+++.+++ .++
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~~--~~~ 78 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDAI--MGV 78 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHHH--TTC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHHH--hCC
Confidence 4566899999999999999999999999999999986432 47889999999999999999 799
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC--CCCCCCCCCCCCCCCChHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE--PDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~--~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
|+|||+|+..... .......+++|+.++.+++++|++.++++|||+||.++||. ....+++|+++..|.++|+.+|
T Consensus 79 d~vih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK 156 (347)
T 4id9_A 79 SAVLHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTK 156 (347)
T ss_dssp SEEEECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred CEEEECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHH
Confidence 9999999976543 23347899999999999999999999999999999999998 5667899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecccc-------------CCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVI-------------GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~-------------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
..+|++++.++++.++++++|||+++| ||+...... ........+.++..++..+..+.+ +.+.
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 233 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPR--IHQQQNFGNAAIAELLQSRDIGEP-SHIL 233 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHH--HHHHHHHTCHHHHHHHHHHCCSSC-CEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccc--cccccccchhHHHHHHHHHHcCCC-eEEe
Confidence 999999999998899999999999999 664210000 000000001567778888888877 7777
Q ss_pred CccccCCCCcccccc----ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCC
Q 016208 271 GTDYNTADGTCVRDY----IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGD 346 (393)
Q Consensus 271 g~~~~~~~g~~~~~~----i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~ 346 (393)
| ++++.++| +|++|+|++++.+++.+... +++||+++++.+|+.|+++.+.+.+|.+.+....+....
T Consensus 234 g------~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~- 305 (347)
T 4id9_A 234 A------RNENGRPFRMHITDTRDMVAGILLALDHPEAA-GGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGDGV- 305 (347)
T ss_dssp E------ECTTCCBCEECEEEHHHHHHHHHHHHHCGGGT-TEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSCCC-
T ss_pred C------CCCcccCCccCcEeHHHHHHHHHHHhcCcccC-CCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCccc-
Confidence 7 78888999 99999999999999976432 479999999999999999999999999888766555443
Q ss_pred CcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 347 YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 347 ~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
...+|++|+++.|||+|++ +++++|+++++||+++...
T Consensus 306 --~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~~~~~~~ 343 (347)
T 4id9_A 306 --YYHTSNERIRNTLGFEAEW-TMDRMLEEAATARRQRLAK 343 (347)
T ss_dssp --BCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCC-
T ss_pred --ccccCHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhhhhc
Confidence 6789999999999999999 8999999999999987654
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=354.11 Aligned_cols=310 Identities=26% Similarity=0.388 Sum_probs=254.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+|+|||||||||||++|+++|+++| ++|++++|...... .+.+..+.. ..++.++.+|+.|.+++.+++ .++|
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~--~~~d 77 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSN--PANLKDLED-DPRYTFVKGDVADYELVKELV--RKVD 77 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHH--HTCS
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCc--hhHHhhhcc-CCceEEEEcCCCCHHHHHHHh--hCCC
Confidence 4789999999999999999999996 89999998542211 111222211 357899999999999999999 7899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
+|||+|+......+..++...+++|+.++.+++++|.+.+. ++|||+||.++||.....+++|+++..|.++|+.+|..
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~ 157 (336)
T 2hun_A 78 GVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAA 157 (336)
T ss_dssp EEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHHH
T ss_pred EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHHH
Confidence 99999997654333456778999999999999999998874 69999999999998766789999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|.+++.++.+.+++++++||+.||||..... .+++.++..+..+.+ +++.+ ++.+.+++
T Consensus 158 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~ 217 (336)
T 2hun_A 158 SDMLVLGWTRTYNLNASITRCTNNYGPYQFPE-------------KLIPKTIIRASLGLK-IPIYG------TGKNVRDW 217 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECEEESTTCCTT-------------SHHHHHHHHHHTTCC-EEEET------C---CEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC-------------chHHHHHHHHHcCCC-ceEeC------CCCceeee
Confidence 99999999988899999999999999974311 466777777777776 77777 78889999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCCCCCCcceecCHHHHHhhCCCc
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDYAEVYSDPSKIRDELNWT 364 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 364 (393)
+|++|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.+ +...+........+.+|++|+++.|||+
T Consensus 218 i~v~Dva~~~~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 295 (336)
T 2hun_A 218 LYVEDHVRAIELVLLKGES--REIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWR 295 (336)
T ss_dssp EEHHHHHHHHHHHHHHCCT--TCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCC
T ss_pred EEHHHHHHHHHHHHhCCCC--CCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCC
Confidence 9999999999999986543 479999999999999999999999998754 4443433444445678999999999999
Q ss_pred eeccCHHHHHHHHHHHHHhccC
Q 016208 365 ARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 365 p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
|++ +++|+|+++++||+++..
T Consensus 296 p~~-~~~~~l~~~~~~~~~~~~ 316 (336)
T 2hun_A 296 PKY-TFDEGIKKTIDWYLKNEW 316 (336)
T ss_dssp CSS-CHHHHHHHHHHHHHHTHH
T ss_pred CCC-CHHHHHHHHHHHHHhCcc
Confidence 998 899999999999987643
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=354.30 Aligned_cols=310 Identities=26% Similarity=0.363 Sum_probs=257.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC---C---CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD---S---YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
|+|||||||||||++|+++|+++ | ++|++++|...... .+.+..+. ...++.++.+|+.|++++.+++ .
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~--~ 75 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVD-ADPRLRFVHGDIRDAGLLAREL--R 75 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGT-TCTTEEEEECCTTCHHHHHHHT--T
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc--hhhhhhcc-cCCCeEEEEcCCCCHHHHHHHh--c
Confidence 58999999999999999999997 8 99999998542211 11122221 1257899999999999999999 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
++|+|||+|+......+..++...+++|+.++.+++++|.+.++++|||+||.++||.....+++|+.+..|.++|+.+|
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASK 155 (337)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHH
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHH
Confidence 99999999997654333456778999999999999999999999999999999999987667899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
..+|.+++.++.+.+++++++||+.+|||+.... .+++.++..+..+.+ +.+++ ++++.+
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~ 215 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-------------KLIPLFVTNLLDGGT-LPLYG------DGANVR 215 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-------------SHHHHHHHHHHTTCC-EEEET------TSCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC-------------ChHHHHHHHHhcCCC-cEEeC------CCCeeE
Confidence 9999999999888899999999999999974311 566777777777776 77767 788999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCCCCCCcceecCHHHHHhhCC
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG 362 (393)
+|+|++|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.+ +...+..+.....+.+|++|+++.||
T Consensus 216 ~~i~v~Dva~a~~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 293 (337)
T 1r6d_A 216 EWVHTDDHCRGIALVLAGGRA--GEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293 (337)
T ss_dssp EEEEHHHHHHHHHHHHHHCCT--TCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHC
T ss_pred eeEeHHHHHHHHHHHHhCCCC--CCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcC
Confidence 999999999999999986543 379999999999999999999999998754 43333333344456789999999999
Q ss_pred CceeccCHHHHHHHHHHHHHhccCC
Q 016208 363 WTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
|+|++ +++|+|+++++||+++..+
T Consensus 294 ~~p~~-~~~e~l~~~~~~~~~~~~~ 317 (337)
T 1r6d_A 294 YRPQV-SFADGLARTVRWYRENRGW 317 (337)
T ss_dssp CCCCS-CHHHHHHHHHHHHHHCHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHhchhc
Confidence 99998 7999999999999886543
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-47 Score=360.24 Aligned_cols=311 Identities=24% Similarity=0.341 Sum_probs=255.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHH--CCCeEEEEeCCCCCCch------hhhhhhhhcCCCCccEEEEccCCCHHHH
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLSRGNMG------AVKVLQELFPQPGQLQFIYADLGDAKAV 116 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 116 (393)
+.+.+|+|||||||||||++|+++|++ .|++|++++|....... .......+ ...++.++.+|+.+++++
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~ 83 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADINNPLDL 83 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTTCHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCCCHHHH
Confidence 456779999999999999999999999 99999999986541110 00011111 124679999999999999
Q ss_pred HHH-HhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 117 NKI-FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 117 ~~~-~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++ . .++|+|||+||.... +..++...+++|+.++.+++++|++.+++ |||+||.++||.... +++|+++..|
T Consensus 84 ~~~~~--~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~-~~~E~~~~~p 157 (362)
T 3sxp_A 84 RRLEK--LHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA-PNVVGKNESP 157 (362)
T ss_dssp HHHTT--SCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS-SBCTTSCCCC
T ss_pred HHhhc--cCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC-CCCCCCCCCC
Confidence 998 5 799999999997644 45778899999999999999999999986 999999999998877 9999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
.++|+.+|..+|.+++.++.+ ++++++||+++|||+.... ...+.++..++..+..+.+ +.+.+
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~---- 221 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYK---------EKTASMVLQLALGAMAFKE-VKLFE---- 221 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGG---------GGGSCHHHHHHHHHHTTSE-EECSG----
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCC---------CcchhHHHHHHHHHHhCCC-eEEEC----
Confidence 999999999999999998765 8999999999999975321 0112567777888888776 66666
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC-CCCCcceecCH
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR-PGDYAEVYSDP 354 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~ 354 (393)
++++.++|+|++|+|++++.+++.+. .+ +||+++++++|+.|+++.+.+.+| +.++...+.. ........+|+
T Consensus 222 --~g~~~~~~i~v~Dva~ai~~~~~~~~--~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~ 295 (362)
T 3sxp_A 222 --FGEQLRDFVYIEDVIQANVKAMKAQK--SG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHI 295 (362)
T ss_dssp --GGCCEEECEEHHHHHHHHHHHTTCSS--CE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCC
T ss_pred --CCCeEEccEEHHHHHHHHHHHHhcCC--CC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCH
Confidence 78899999999999999999998754 23 999999999999999999999999 7777666655 55666788999
Q ss_pred HHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 355 SKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 355 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
+|+++.|||+|++ +++++|+++++||+++..
T Consensus 296 ~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~~ 326 (362)
T 3sxp_A 296 EPTILDLDYTPLY-DLESGIKDYLPHIHAIFK 326 (362)
T ss_dssp HHHHHHHCCCCCC-CHHHHHHHHHHHHTCC--
T ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHHHhh
Confidence 9999999999999 899999999999988754
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=359.13 Aligned_cols=301 Identities=25% Similarity=0.375 Sum_probs=255.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..||+|||||||||||++|+++|+++|++|++++|...........+..+.. ..+++++.+|+. ++|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~------------~~d 71 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLE-KPVLELEERDLS------------DVR 71 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEEC-SCGGGCCHHHHT------------TEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhcc-CCCeeEEeCccc------------cCC
Confidence 4468999999999999999999999999999999865421111111111111 145666666654 899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||+|+......+..++...++ |+.++.+++++|++.++++|||+||.++|+.....+++|+++..|.++|+.+|..+
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~ 150 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGL 150 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 99999998765444556666777 99999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHhhCCC-cEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 207 EDIIIDFSKTTNM-AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 207 E~~~~~~~~~~g~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
|++++.++.+.++ +++++||+.+|||+.... .+++.++..+..+.+ +.+.| ++++.++|
T Consensus 151 E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~ 210 (321)
T 3vps_A 151 EMVAGAHQRASVAPEVGIVRFFNVYGPGERPD-------------ALVPRLCANLLTRNE-LPVEG------DGEQRRDF 210 (321)
T ss_dssp HHHHHHHHHSSSSCEEEEEEECEEECTTCCTT-------------SHHHHHHHHHHHHSE-EEEET------TSCCEECE
T ss_pred HHHHHHHHHHcCCCceEEEEeccccCcCCCCC-------------ChHHHHHHHHHcCCC-eEEeC------CCCceEce
Confidence 9999999988899 999999999999975431 577888888887777 77777 88999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCce
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTA 365 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 365 (393)
+|++|+|++++.+++.+.. + +||+++++.+|+.|+++.+. .+|.+.++...+..........+|++|+++.|||+|
T Consensus 211 v~v~Dva~~~~~~~~~~~~--g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 286 (321)
T 3vps_A 211 TYITDVVDKLVALANRPLP--S-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERS 286 (321)
T ss_dssp EEHHHHHHHHHHGGGSCCC--S-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCS
T ss_pred EEHHHHHHHHHHHHhcCCC--C-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCC
Confidence 9999999999999987655 3 99999999999999999999 999999888888778888889999999999999999
Q ss_pred -eccCHHHHHHHHHHHHHhccC
Q 016208 366 -RFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 366 -~~~~~~e~l~~~~~~~~~~~~ 386 (393)
++ +++++|+++++||+++..
T Consensus 287 ~~~-~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 287 GGI-GIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp CCC-CHHHHHHHHHHHHHTSCT
T ss_pred CcC-CHHHHHHHHHHHHHhCCC
Confidence 77 899999999999998753
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-47 Score=357.51 Aligned_cols=316 Identities=23% Similarity=0.406 Sum_probs=253.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCc-hhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNM-GAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
||+|||||||||||++|+++|+++|++|++++|..+... .....+.. ..++.++.+|+.|++++.++++..++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS----LGNFEFVHGDIRNKNDVTRLITKYMPDS 76 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc----CCceEEEEcCCCCHHHHHHHHhccCCCE
Confidence 689999999999999999999999999999998543322 11222221 2468999999999999999995445999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceeecCCCCC----------------CCCCC
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATYGEPDKM----------------PITES 190 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vyg~~~~~----------------~~~E~ 190 (393)
|||+|+......+..++...+++|+.++.+++++|.+.+++ +|||+||.++||..... +++|+
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~ 156 (347)
T 1orr_A 77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 156 (347)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcccc
Confidence 99999976543334567789999999999999999998885 99999999999865432 36777
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC-----C
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII-----P 265 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 265 (393)
.+..|.++|+.+|+.+|.+++.++.+.|+++++|||+.||||...... ...++..++.....+. +
T Consensus 157 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 226 (347)
T 1orr_A 157 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATY----------DQGWVGWFCQKAVEIKNGINKP 226 (347)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBT----------TBCHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCC----------cCcHHHHHHHHHHhCcccCCCC
Confidence 788889999999999999999998888999999999999999753210 0134454544444333 4
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC--cccHHHHHHHHHHHhCCCcceEEccCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK--GRSVKEFVEACKKATGVNIKVEYLSRR 343 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~--~~s~~el~~~i~~~~g~~~~~~~~~~~ 343 (393)
+.+.| ++++.++|+|++|+|++++.+++......+++||+++++ ++|+.|+++.+.+.+|.+.++...+..
T Consensus 227 -~~~~g------~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~ 299 (347)
T 1orr_A 227 -FTISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR 299 (347)
T ss_dssp -EEEES------SSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred -eEEec------CCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCC
Confidence 66666 789999999999999999999884221234699999886 499999999999999998877766655
Q ss_pred CCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 344 ~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
..+.....+|++|+++.|||+|++ +++|+|+++++|+++++.
T Consensus 300 ~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 300 ESDQRVFVADIKKITNAIDWSPKV-SAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp SSCCSEECBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHC--
T ss_pred CCCcceeecCHHHHHHHHCCCccC-CHHHHHHHHHHHHHHHHH
Confidence 556667789999999999999998 899999999999998754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=363.61 Aligned_cols=319 Identities=24% Similarity=0.369 Sum_probs=250.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..||+|||||||||||++|+++|+++| ++|++++|....... .+. ...+++++.+|+.+++++.+++ .++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~----~~~~v~~~~~Dl~d~~~l~~~~--~~~ 100 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP----DHPAVRFSETSITDDALLASLQ--DEY 100 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC----CCTTEEEECSCTTCHHHHHHCC--SCC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc----CCCceEEEECCCCCHHHHHHHh--hCC
Confidence 467899999999999999999999999 999999886443221 111 1257899999999999999998 699
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCCCCCCCC--CCC---CC-CCCCh
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEPDKMPIT--EST---PQ-KPINP 198 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~~~~~~~--E~~---~~-~p~~~ 198 (393)
|+|||+|+......+..++...+++|+.++.+++++|++. ++++|||+||.++||.....+++ |+. +. .|.++
T Consensus 101 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~ 180 (377)
T 2q1s_A 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSP 180 (377)
T ss_dssp SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSH
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCc
Confidence 9999999976543334567889999999999999999998 89999999999999987666788 887 76 88999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCC
Q 016208 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD 278 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 278 (393)
|+.+|..+|.+++.++.+.+++++++||+.||||+..+..|............+++.++..+..+.+ +.+.| +
T Consensus 181 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g------~ 253 (377)
T 2q1s_A 181 YSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMP-LPLEN------G 253 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCC-CCCSG------G
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCC-eEEeC------C
Confidence 9999999999999998878999999999999999752111100000000001567777888877776 66655 7
Q ss_pred CccccccccHHHHHHH-HHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCc-ceecCHHH
Q 016208 279 GTCVRDYIDVTDLVDA-HVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYA-EVYSDPSK 356 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a-~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~d~~k 356 (393)
+++.++|+|++|+|++ ++.+++.+. .+ +||+++++.+|+.|+++.+.+.+|.+.++...+..+.+.. ...+|++|
T Consensus 254 g~~~~~~i~v~Dva~a~i~~~~~~~~--~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k 330 (377)
T 2q1s_A 254 GVATRDFIFVEDVANGLIACAADGTP--GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEK 330 (377)
T ss_dssp GCCEECCEEHHHHHHHHHHHHHHCCT--TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHH
T ss_pred CCeEEeeEEHHHHHHHHHHHHHhcCC--CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHH
Confidence 8899999999999999 999998754 34 9999999999999999999999998876655554444445 67899999
Q ss_pred HHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 357 IRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 357 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
+++.|||+|++ +++|+|+++++||+++.
T Consensus 331 ~~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 331 ARRELGFSADV-SIDDGLRKTIEWTKANL 358 (377)
T ss_dssp HHHHHCCCCCC-CHHHHHHHHHHHHHHTH
T ss_pred HHHHcCCCCCC-CHHHHHHHHHHHHHHhh
Confidence 99999999998 89999999999998763
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=353.09 Aligned_cols=307 Identities=25% Similarity=0.368 Sum_probs=254.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||+|||||||||||++|+++|+++ |++|++++|...... .+.+..+. ..++.++.+|+.|.+++.+++ .++|
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~--~~~d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAIL--GDRVELVVGDIADAELVDKLA--AKAD 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGC--SSSEEEEECCTTCHHHHHHHH--TTCS
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC--hhHHhhhc--cCCeEEEECCCCCHHHHHHHh--hcCC
Confidence 689999999999999999999999 899999998643211 11122221 257899999999999999999 7889
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC------------CCCCCCCCCC
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK------------MPITESTPQK 194 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~------------~~~~E~~~~~ 194 (393)
+|||+|+......+..++...+++|+.++.+++++|.+.++ +|||+||.++||.... .+++|+++..
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~ 156 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 156 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCC
Confidence 99999997654333456778999999999999999999888 9999999999986532 5889999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
|.++|+.+|..+|.+++.++.+.|++++++||+.+|||..... .+++.++..+..+.+ +.+.+
T Consensus 157 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~--- 219 (348)
T 1oc2_A 157 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-------------KFIPRQITNILAGIK-PKLYG--- 219 (348)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-------------SHHHHHHHHHHHTCC-CEEET---
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc-------------chHHHHHHHHHcCCC-ceEec---
Confidence 9999999999999999999888899999999999999975311 456666777777766 66666
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCCCCCCcceecC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDYAEVYSD 353 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d 353 (393)
++.+.++++|++|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.+ +...+..+.....+.+|
T Consensus 220 ---~~~~~~~~i~v~Dva~~~~~~~~~~~~--g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 294 (348)
T 1oc2_A 220 ---EGKNVRDWIHTNDHSTGVWAILTKGRM--GETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAID 294 (348)
T ss_dssp ---TSCCEEECEEHHHHHHHHHHHHHHCCT--TCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBC
T ss_pred ---CCCceEeeEEHHHHHHHHHHHhhCCCC--CCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccC
Confidence 788899999999999999999986543 479999999999999999999999998754 33333334444566799
Q ss_pred HHHHHhhCCCceeccC-HHHHHHHHHHHHHhcc
Q 016208 354 PSKIRDELNWTARFTD-LQGSLQIAWRWQKTHI 385 (393)
Q Consensus 354 ~~k~~~~lG~~p~~~~-~~e~l~~~~~~~~~~~ 385 (393)
++|+++.|||+|++ + ++|+|+++++||+++.
T Consensus 295 ~~k~~~~lG~~p~~-~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 295 ASKLRDELGWTPQF-TDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp CHHHHHHHCCCCSC-CCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCCCCC-CcHHHHHHHHHHHHHHhh
Confidence 99999999999998 6 9999999999998764
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=350.38 Aligned_cols=317 Identities=22% Similarity=0.234 Sum_probs=253.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...+|+|||||||||||++|+++|+++|++|++++|....... ..+..+. ...++.++.+|+.+.+++.++++..++
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 87 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELG-IEGDIQYEDGDMADACSVQRAVIKAQP 87 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc--cchhhcc-ccCceEEEECCCCCHHHHHHHHHHcCC
Confidence 3456899999999999999999999999999999986543211 1111111 124788999999999999999965578
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
|+|||+|+......+..++...+++|+.++.+++++|.+.++ ++|||+||.++||.....+++|+++..|.++|+.+|.
T Consensus 88 d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~ 167 (335)
T 1rpn_A 88 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKL 167 (335)
T ss_dssp SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHH
T ss_pred CEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHH
Confidence 999999997654334557788999999999999999999886 8999999999999877778999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.+|.+++.++.+.+++++++||+++|||+....+. ...+..++..+..+.+.....| ++++.++
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~g------~g~~~~~ 231 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFV----------TRKVTDAVARIKLGKQQELRLG------NVDAKRD 231 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH----------HHHHHHHHHHHHTTSCSCEEES------CTTCEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcc----------hHHHHHHHHHHHcCCCceEEeC------CCcceec
Confidence 99999999988889999999999999997432100 0224445555555553233445 7889999
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc--eEEcc--CCCCCCcceecCHHHHHhh
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--VEYLS--RRPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~~~~ 360 (393)
|+|++|+|++++.+++.+.. ++||+++++.+|+.|+++.+.+.+|.+.+ ....+ ..+.......+|++|++++
T Consensus 232 ~i~v~Dva~a~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 308 (335)
T 1rpn_A 232 WGFAGDYVEAMWLMLQQDKA---DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRV 308 (335)
T ss_dssp CEEHHHHHHHHHHHHHSSSC---CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHH
T ss_pred eEEHHHHHHHHHHHHhcCCC---CEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHh
Confidence 99999999999999987542 69999999999999999999999998643 22211 2334445677899999999
Q ss_pred CCCceeccCHHHHHHHHHHHHHhcc
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|||+|++ +++|+|+++++||+++.
T Consensus 309 lG~~p~~-~l~e~l~~~~~~~~~~~ 332 (335)
T 1rpn_A 309 LGWKPRT-SLDELIRMMVEADLRRV 332 (335)
T ss_dssp HCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCcCC-CHHHHHHHHHHHHHHhh
Confidence 9999999 89999999999998764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-46 Score=352.43 Aligned_cols=314 Identities=22% Similarity=0.259 Sum_probs=253.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|||||||||||++|+++|+++|++|++++|.........+.+. ...++.++.+|+.+++++.++++..++|+
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 83 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPEI 83 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc----cCCceEEEEccccCHHHHHHHHHhcCCCE
Confidence 45899999999999999999999999999999996544332222221 13578999999999999999996546999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCC-CCCCCCCCCCCCChHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDK-MPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~-~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|||+|+......+..++...+++|+.++.+++++|.+.+ +++|||+||.++||.... .+++|+++..|.++|+.+|..
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~ 163 (357)
T 1rkx_A 84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGC 163 (357)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHH
T ss_pred EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHHH
Confidence 999999644333345677899999999999999999886 889999999999987653 478898888899999999999
Q ss_pred HHHHHHHHHhhC---------CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 206 SEDIIIDFSKTT---------NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 206 ~E~~~~~~~~~~---------g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
+|++++.++.+. |++++++||+.||||+.... +.++..++..+..+.+ +.+.
T Consensus 164 ~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~------------~~~~~~~~~~~~~g~~-~~~~------ 224 (357)
T 1rkx_A 164 AELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL------------DRIVPDILRAFEQSQP-VIIR------ 224 (357)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS------------SCHHHHHHHHHHTTCC-EECS------
T ss_pred HHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc------------ccHHHHHHHHHhcCCC-EEEC------
Confidence 999999987654 99999999999999974210 1577888888887776 5543
Q ss_pred CCCccccccccHHHHHHHHHHHHhc---CCCCCcceEEecCC--CcccHHHHHHHHHHHhCCCcceEEccC-CCCCCcce
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALAN---AKPGKVGIYNVGTG--KGRSVKEFVEACKKATGVNIKVEYLSR-RPGDYAEV 350 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~---~~~~~~~~yni~~~--~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~ 350 (393)
++++.++|+|++|+|++++.+++. .....+++||++++ +.+|+.|+++.+.+.+|.+.++...+. .+......
T Consensus 225 -~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 303 (357)
T 1rkx_A 225 -NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYL 303 (357)
T ss_dssp -CTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCC
T ss_pred -CCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccc
Confidence 467889999999999999998874 21123479999974 689999999999999998776544331 23345567
Q ss_pred ecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 351 YSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 351 ~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
.+|++|+++.|||+|++ +++|+|+++++||+++..
T Consensus 304 ~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~~ 338 (357)
T 1rkx_A 304 KLDCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNWLS 338 (357)
T ss_dssp CBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCCcCC-cHHHHHHHHHHHHHHHhc
Confidence 89999999999999998 899999999999988754
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=351.35 Aligned_cols=309 Identities=21% Similarity=0.273 Sum_probs=254.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...||+|||||||||||++|+++|+++|++|++++|......... ..+++++.+|+.|.+++.+++ .++
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~v~~~~~Dl~d~~~~~~~~--~~~ 94 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED---------MFCDEFHLVDLRVMENCLKVT--EGV 94 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG---------GTCSEEEECCTTSHHHHHHHH--TTC
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc---------cCCceEEECCCCCHHHHHHHh--CCC
Confidence 346789999999999999999999999999999998654322110 147899999999999999999 799
Q ss_pred cEEEEcccccCccCC-ccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC-----CCCCCCC--CCCCCC
Q 016208 126 DAVMHFAAVAYVGES-TLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK-----MPITEST--PQKPIN 197 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~-~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~-----~~~~E~~--~~~p~~ 197 (393)
|+|||+|+....... ..++...+++|+.++.+++++|++.++++|||+||.++|+.... .+++|++ +..|.+
T Consensus 95 d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~ 174 (379)
T 2c5a_A 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 174 (379)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred CEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCC
Confidence 999999997643211 45678899999999999999999999999999999999985422 3577876 677889
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
+|+.+|..+|.+++.++.+.+++++++||+.+|||+.....+. ..++..++..+..+.+.+.++|
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g------ 239 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGR---------EKAPAAFCRKAQTSTDRFEMWG------ 239 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSC---------CCHHHHHHHHHHHCSSCEEEES------
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCccccc---------ccHHHHHHHHHHhCCCceEEeC------
Confidence 9999999999999999888899999999999999975421100 0356666666655554366666
Q ss_pred CCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHH
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKI 357 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 357 (393)
++++.++|+|++|+|++++.+++.+ . +++||+++++.+|+.|+++.+.+.+|.+.++...+... ......+|++|+
T Consensus 240 ~g~~~~~~i~v~Dva~ai~~~l~~~-~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-~~~~~~~d~~k~ 315 (379)
T 2c5a_A 240 DGLQTRSFTFIDECVEGVLRLTKSD-F--REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLI 315 (379)
T ss_dssp CSCCEECCEEHHHHHHHHHHHHHSS-C--CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHH
T ss_pred CCCeeEEEEEHHHHHHHHHHHhhcc-C--CCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC-CcccccCCHHHH
Confidence 7889999999999999999999865 2 36999999999999999999999999887766655432 344567899999
Q ss_pred HhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 358 RDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 358 ~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
++.|||+|++ +++|+|+++++||+++.
T Consensus 316 ~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 342 (379)
T 2c5a_A 316 KEKLGWAPNM-RLKEGLRITYFWIKEQI 342 (379)
T ss_dssp HHHHSCCCCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCC-CHHHHHHHHHHHHHHhH
Confidence 9999999998 89999999999998753
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=349.02 Aligned_cols=300 Identities=19% Similarity=0.294 Sum_probs=247.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|||||||||||++|+++|+++|++|++++|.. .+|+.|.+++.++++..++|+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~ 58 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQ 58 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCE
Confidence 357999999999999999999999999999976531 169999999999995448999
Q ss_pred EEEcccccCc-cCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC----CCCCC-ChHHH
Q 016208 128 VMHFAAVAYV-GESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST----PQKPI-NPYGK 201 (393)
Q Consensus 128 Vi~~A~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~p~-~~Y~~ 201 (393)
|||+|+.... ..+..++...+++|+.++.+++++|++.++++|||+||.++||.....+++|++ +..|. ++|+.
T Consensus 59 vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~ 138 (321)
T 1e6u_A 59 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 138 (321)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHH
Confidence 9999997542 123456778899999999999999999999999999999999987777889987 55564 59999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC----C-CCceeEcCccccC
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG----I-IPGLKIRGTDYNT 276 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~g~~~~~ 276 (393)
+|..+|.+++.++++.+++++++||+.+|||+...... .+.+++.++..+.. + .+ +.+.+
T Consensus 139 sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~-~~~~~----- 203 (321)
T 1e6u_A 139 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPS---------NSHVIPALLRRFHEATAQKAPD-VVVWG----- 203 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTT---------CSSHHHHHHHHHHHHHHHTCSE-EEEES-----
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCC---------CCccHHHHHHHHHHhhhcCCCc-eEEcC-----
Confidence 99999999999988789999999999999997542110 11456666666543 2 34 66666
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCCCC-------CcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcc
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAKPG-------KVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAE 349 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~~~-------~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~ 349 (393)
++++.++|+|++|+|++++.+++.+... .+++||+++++.+|+.|+++.+.+.+|.+.++...+..+.....
T Consensus 204 -~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~ 282 (321)
T 1e6u_A 204 -SGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPR 282 (321)
T ss_dssp -CSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSB
T ss_pred -CCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCccc
Confidence 7889999999999999999999865431 23699999999999999999999999998877666655555667
Q ss_pred eecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCC
Q 016208 350 VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388 (393)
Q Consensus 350 ~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 388 (393)
..+|++|+++ |||+|++ +++|+|+++++||+++.+.+
T Consensus 283 ~~~d~~k~~~-lG~~p~~-~~~~~l~~~~~~~~~~~~~~ 319 (321)
T 1e6u_A 283 KLLDVTRLHQ-LGWYHEI-SLEAGLASTYQWFLENQDRF 319 (321)
T ss_dssp CCBCCHHHHH-TTCCCCC-CHHHHHHHHHHHHHHTC---
T ss_pred ccCCHHHHHh-cCCccCC-cHHHHHHHHHHHHHHHHHhh
Confidence 7899999998 9999998 89999999999999987643
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=346.66 Aligned_cols=306 Identities=25% Similarity=0.401 Sum_probs=251.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+.||+|||||||||||++|+++|+++|++|++++|........ +..+.. ..+++++.+|+.+.. + .++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~-~~~~~~~~~D~~~~~-----~--~~~ 92 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWIG-HENFELINHDVVEPL-----Y--IEV 92 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---TGGGTT-CTTEEEEECCTTSCC-----C--CCC
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhh---hhhhcc-CCceEEEeCccCChh-----h--cCC
Confidence 45678999999999999999999999999999999864332211 111111 257899999998752 4 689
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCC-----CCCCCCChHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITES-----TPQKPINPYG 200 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~ 200 (393)
|+|||+|+......+..++...+++|+.++.+++++|.+.++ ++||+||.++||.....+++|+ .+..|.+.|+
T Consensus 93 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~ 171 (343)
T 2b69_A 93 DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYD 171 (343)
T ss_dssp SEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchH
Confidence 999999997654333456778899999999999999999887 9999999999998766678887 4667788999
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|+.+|.+++.++.+.+++++++||+.+|||+..... +.++..++..+..+.+ +.+.| +++
T Consensus 172 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~------~~~ 233 (343)
T 2b69_A 172 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND-----------GRVVSNFILQALQGEP-LTVYG------SGS 233 (343)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC-----------CCHHHHHHHHHHHTCC-EEEES------SSC
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCc-----------ccHHHHHHHHHHcCCC-ceEcC------CCC
Confidence 99999999999998888999999999999999753210 1566667777777776 77766 788
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhh
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 360 (393)
+.++|+|++|+|++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|++|+++.
T Consensus 234 ~~~~~v~v~Dva~a~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~ 310 (343)
T 2b69_A 234 QTRAFQYVSDLVNGLVALMNSNV---SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLM 310 (343)
T ss_dssp CEEECEEHHHHHHHHHHHHTSSC---CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHH
T ss_pred eEEeeEeHHHHHHHHHHHHhcCC---CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHH
Confidence 99999999999999999887643 369999999999999999999999999887776665555566778999999999
Q ss_pred CCCceeccCHHHHHHHHHHHHHhcc
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|||+|++ +++|+|+++++||+++.
T Consensus 311 lG~~p~~-~l~e~l~~~~~~~~~~~ 334 (343)
T 2b69_A 311 LGWEPVV-PLEEGLNKAIHYFRKEL 334 (343)
T ss_dssp HCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999998764
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=348.05 Aligned_cols=310 Identities=24% Similarity=0.366 Sum_probs=253.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|+|||||||||||++|+++|++. |++|++++|...... .+.+..+.. ..++.++.+|+.|.+++.+++++.++|+|
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCc--hhhhhhhhc-CCCeEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 57999999999999999999998 799999998542111 111222211 35789999999999999999954489999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc--CCc-------EEEEeecceeecCCCC--C--------CCCC
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH--KVK-------TLIYSSTCATYGEPDK--M--------PITE 189 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~-------~~V~~SS~~vyg~~~~--~--------~~~E 189 (393)
||+|+......+..++...+++|+.++.+++++|.+. +++ +|||+||.++||.... . +++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E 157 (361)
T 1kew_A 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCC
Confidence 9999976543334567789999999999999999988 877 9999999999986542 1 7899
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
+++..|.++|+.+|..+|.+++.++.+.+++++++||+.||||..... .+++.++..+..+.+ +++
T Consensus 158 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-------------~~~~~~~~~~~~~~~-~~~ 223 (361)
T 1kew_A 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-------------KLIPLVILNALEGKP-LPI 223 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------------SHHHHHHHHHHHTCC-EEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc-------------cHHHHHHHHHHcCCC-ceE
Confidence 999999999999999999999999888899999999999999974311 456666777777766 777
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc--------eEEcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--------VEYLS 341 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~--------~~~~~ 341 (393)
.+ ++.+.++++|++|+|++++.+++.+.. +++||+++++.+|+.|+++.+.+.+|.+.+ +...+
T Consensus 224 ~~------~~~~~~~~i~v~Dva~a~~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~ 295 (361)
T 1kew_A 224 YG------KGDQIRDWLYVEDHARALHMVVTEGKA--GETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA 295 (361)
T ss_dssp ET------TSCCEEEEEEHHHHHHHHHHHHHHCCT--TCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC
T ss_pred cC------CCceeEeeEEHHHHHHHHHHHHhCCCC--CCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecC
Confidence 67 788899999999999999999986543 479999999999999999999999986542 22223
Q ss_pred CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 342 RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 342 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
..+.....+.+|++|++++|||+|++ +++|+|+++++||+++.
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~~~~~~ 338 (361)
T 1kew_A 296 DRPGHDRRYAIDAGKISRELGWKPLE-TFESGIRKTVEWYLANT 338 (361)
T ss_dssp CCTTCCCBCCBCCHHHHHHHCCCCSC-CHHHHHHHHHHHHHHCH
T ss_pred CCCcccceeecCHHHHHHHhCCCCcc-CHHHHHHHHHHHHHhcc
Confidence 33333445679999999999999998 89999999999998764
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=338.30 Aligned_cols=277 Identities=17% Similarity=0.157 Sum_probs=242.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+++|++|++++|. .+|+.|.+++.++++..++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------------LLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------------TSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------------ccCCCCHHHHHHHHHhcCCCEEE
Confidence 499999999999999999999999999999871 17999999999999655899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+......+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+++..|.++|+.+|..+|++
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 140 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQF 140 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99998766555578889999999999999999999998 79999999999988878999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++.++. +++++||+.+|||+.. .++..++..+..+.+ +.+.| ++.++++|++
T Consensus 141 ~~~~~~----~~~ilR~~~v~G~~~~---------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 192 (287)
T 3sc6_A 141 VKELHN----KYFIVRTSWLYGKYGN---------------NFVKTMIRLGKEREE-ISVVA--------DQIGSPTYVA 192 (287)
T ss_dssp HHHHCS----SEEEEEECSEECSSSC---------------CHHHHHHHHHTTCSE-EEEEC--------SCEECCEEHH
T ss_pred HHHhCC----CcEEEeeeeecCCCCC---------------cHHHHHHHHHHcCCC-eEeec--------CcccCceEHH
Confidence 998643 6899999999998643 677888888887776 77655 3788999999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc-----CCCCCCcceecCHHHHHhhCCCc
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS-----RRPGDYAEVYSDPSKIRDELNWT 364 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~-----~~~~~~~~~~~d~~k~~~~lG~~ 364 (393)
|+|++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+.++...+ ..........+|++|++ .|||.
T Consensus 193 Dva~~~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~ 268 (287)
T 3sc6_A 193 DLNVMINKLIHTSL---YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFL 268 (287)
T ss_dssp HHHHHHHHHHTSCC---CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCC
T ss_pred HHHHHHHHHHhCCC---CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCC
Confidence 99999999999765 36999999999999999999999999987766543 23445566789999999 89999
Q ss_pred eeccCHHHHHHHHHHHHHhc
Q 016208 365 ARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 365 p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++ +++++|+++++|++++
T Consensus 269 p~~-~~~~~l~~~~~~~~~~ 287 (287)
T 3sc6_A 269 QMP-SWEEGLERFFIETKSH 287 (287)
T ss_dssp CCC-BHHHHHHHHHHHTC--
T ss_pred CCc-cHHHHHHHHHHHHhcC
Confidence 998 8999999999998753
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=345.99 Aligned_cols=315 Identities=20% Similarity=0.262 Sum_probs=248.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~ 127 (393)
|+|||||||||||++|+++|+++ |++|++++|...... .+. ...+++++.+|+.+. +.+.+++ .++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-------~~~-~~~~~~~~~~D~~~~~~~~~~~~--~~~d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-------RFL-NHPHFHFVEGDISIHSEWIEYHV--KKCDV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG-------GGT-TCTTEEEEECCTTTCSHHHHHHH--HHCSE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH-------Hhh-cCCCeEEEeccccCcHHHHHhhc--cCCCE
Confidence 58999999999999999999998 899999998543221 111 125789999999984 6688888 58999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-------CCCChHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-------KPINPYG 200 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-------~p~~~Y~ 200 (393)
|||+|+.........++...+++|+.++.+++++|++.+ +++||+||.++||.....+++|+++. .|.+.|+
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~ 149 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYS 149 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccH
Confidence 999999765433345677889999999999999999988 89999999999998776678888754 3455899
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|..+|.+++.++++.+++++++||+.||||+........ .....++..++..+..+.+ +.+.+ +++
T Consensus 150 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~------~g~ 217 (345)
T 2bll_A 150 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAAR-----IGSSRAITQLILNLVEGSP-IKLID------GGK 217 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSB-----SCBCHHHHHHHHHHHHTCC-EEEGG------GSC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccc-----cccccHHHHHHHHHHcCCC-cEEEC------CCC
Confidence 99999999999998888999999999999999754211000 0011456667777777777 77766 788
Q ss_pred cccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCC-cccHHHHHHHHHHHhCCCcceEEccCCC--------------
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGK-GRSVKEFVEACKKATGVNIKVEYLSRRP-------------- 344 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~~-------------- 344 (393)
+.++|+|++|+|++++.+++.+.. ..+++||+++++ .+|+.|+++.+.+.+|.+......+...
T Consensus 218 ~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (345)
T 2bll_A 218 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKG 297 (345)
T ss_dssp CEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC---------
T ss_pred EEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhcccc
Confidence 899999999999999999986531 234799999886 8999999999999998764322222111
Q ss_pred -CCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCC
Q 016208 345 -GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388 (393)
Q Consensus 345 -~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~ 388 (393)
.......+|++|++++|||+|++ +++++|+++++||+++....
T Consensus 298 ~~~~~~~~~d~~k~~~~lG~~p~~-~l~~~l~~~~~~~~~~~~~~ 341 (345)
T 2bll_A 298 YQDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRTVDLT 341 (345)
T ss_dssp ---CCCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHSCTT
T ss_pred ccchhhhcccHHHHHHhcCCCccc-cHHHHHHHHHHHHHHcCCCC
Confidence 12345678999999999999999 89999999999998875543
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=348.91 Aligned_cols=332 Identities=23% Similarity=0.254 Sum_probs=251.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCch-------------hhhhhhhhc-CCCCccEEEEccCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG-------------AVKVLQELF-PQPGQLQFIYADLGD 112 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~Dl~~ 112 (393)
..|++|||||||||||++|+++|+++|++|++++|..+.... ..+.+..+. ....++.++.+|+.+
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 467899999999999999999999999999999875332110 001111100 002478999999999
Q ss_pred HHHHHHHHhhCCCcEEEEcccccCccCCccChH---HHHHHHHHHHHHHHHHHHhcCC-cEEEEeecceeecCCCCCCCC
Q 016208 113 AKAVNKIFAENAFDAVMHFAAVAYVGESTLEPL---RYYHNITSNTLVILEAMAAHKV-KTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 113 ~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~---~~~~~n~~~~~~ll~~~~~~~~-~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.+++.++++..++|+|||+||......+..++. ..+++|+.++.+++++|.+.++ ++|||+||.++||... .+++
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 999999995445999999999764432223333 4789999999999999999887 5999999999998765 3677
Q ss_pred CC--------------CCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCC-CCccccc---c
Q 016208 189 ES--------------TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAP-HPELREH---G 250 (393)
Q Consensus 189 E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~---~ 250 (393)
|+ .+..|.++|+.+|+.+|.+++.++.+.|++++++||++||||+......... ...+... +
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 75 4677889999999999999999988789999999999999997532100000 0000000 1
Q ss_pred cchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHH
Q 016208 251 RISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKK 329 (393)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~ 329 (393)
.++..++..+..+.+ +.+.| ++++.++|+|++|+|++++.+++.+.. +..++||+++ +++|+.|+++.+.+
T Consensus 248 ~~~~~~~~~~~~g~~-~~~~g------~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~e~~~~i~~ 319 (404)
T 1i24_A 248 TALNRFCVQAAVGHP-LTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVNELASLVTK 319 (404)
T ss_dssp CHHHHHHHHHHHTCC-EEEET------TSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCe-eEEeC------CCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHHHHHHHHHH
Confidence 467777777777777 77777 788999999999999999999987543 2126999988 88999999999999
Q ss_pred H---hCCCcceEEccCCCC--CCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCCC
Q 016208 330 A---TGVNIKVEYLSRRPG--DYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 330 ~---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
. +|.+.+....|.... ......+|++|++ +|||+|++ +++++++++++|++.+...+.
T Consensus 320 ~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~-~~~~~l~~~~~~~~~~~~~~~ 382 (404)
T 1i24_A 320 AGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHY-LSDSLLDSLLNFAVQFKDRVD 382 (404)
T ss_dssp HHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCC-CCHHHHHHHHHHHHHTGGGCC
T ss_pred HHHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCc-CHHHHHHHHHHHHHhhhhccC
Confidence 8 788777655554332 2334668999997 79999998 899999999999987765543
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=344.46 Aligned_cols=316 Identities=25% Similarity=0.249 Sum_probs=249.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcC--CCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFP--QPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|+|||||||||||++|+++|+++|++|++++|..... ....+.+..... ...++.++.+|+.|.+++.++++..++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 7999999999999999999999999999999865431 111111100000 1247889999999999999999655789
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC---cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV---KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
+|||+|+......+..++...+++|+.++.+++++|.+.++ ++|||+||.++|+.....+++|+++..|.++|+.+|
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK 184 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAK 184 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCChhHHHH
Confidence 99999997654333456778899999999999999999887 799999999999987777899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
+.+|.+++.++.+.+++++++||+++|||+....+- ...+..++..+..+.+.....| ++++.+
T Consensus 185 ~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~g------~~~~~~ 248 (375)
T 1t2a_A 185 LYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFV----------TRKISRSVAKIYLGQLECFSLG------NLDAKR 248 (375)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSH----------HHHHHHHHHHHHHTSCSCEEES------CTTCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcc----------hHHHHHHHHHHHcCCCceeEeC------CCCcee
Confidence 999999999988889999999999999996432100 0123334444444443133445 788999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceE-------------------Ecc--C
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE-------------------YLS--R 342 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~--~ 342 (393)
+|+|++|+|++++.+++.+.. ++||+++++.+|+.|+++.+.+.+|.+.++. ..+ .
T Consensus 249 ~~i~v~Dva~a~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 325 (375)
T 1t2a_A 249 DWGHAKDYVEAMWLMLQNDEP---EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 325 (375)
T ss_dssp CCEEHHHHHHHHHHHHHSSSC---CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGS
T ss_pred eeEEHHHHHHHHHHHHhcCCC---ceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccC
Confidence 999999999999999986542 5999999999999999999999999875422 111 1
Q ss_pred CCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 343 RPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 343 ~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.+.......+|++|++++|||+|++ +++|+|+++++||++..
T Consensus 326 ~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 367 (375)
T 1t2a_A 326 RPTEVDFLQGDCTKAKQKLNWKPRV-AFDELVREMVHADVELM 367 (375)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcCCHHHHHHhcCCCccC-CHHHHHHHHHHHHHHhh
Confidence 2333445678999999999999999 89999999999998764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=344.74 Aligned_cols=315 Identities=22% Similarity=0.284 Sum_probs=248.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcC----CCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP----QPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
||+|||||||||||++|+++|+++|++|++++|...... ...+..+.. ...++.++.+|+.+.+++.++++..+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFN--TERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ 78 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccc--hHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence 689999999999999999999999999999988543210 011111110 12478899999999999999996557
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC---cEEEEeecceeecCCCCCCCCCCCCCCCCChHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV---KTLIYSSTCATYGEPDKMPITESTPQKPINPYGK 201 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~ 201 (393)
+|+|||+|+.........++...+++|+.++.+++++|.+.++ +++|++||.++||.....+++|+++..|.++|+.
T Consensus 79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~ 158 (372)
T 1db3_A 79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAV 158 (372)
T ss_dssp CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHH
T ss_pred CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHH
Confidence 8999999998765545567788899999999999999999887 7999999999999877778999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|..+|.+++.++.+.+++++++|++++|||+....+ ...++..++..+..+.+.....| ++++
T Consensus 159 sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~g------~~~~ 222 (372)
T 1db3_A 159 AKLYAYWITVNYRESYGMYACNGILFNHESPRRGETF----------VTRKITRAIANIAQGLESCLYLG------NMDS 222 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS----------HHHHHHHHHHHHHTTSCCCEEES------CTTC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcc----------hhhHHHHHHHHHHcCCCCceeec------CCCc
Confidence 9999999999999888999999999999999743210 00234445555555553244445 7889
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEE----------------------
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY---------------------- 339 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~---------------------- 339 (393)
.++|+|++|+|++++.+++.+.. ++||+++++.+|+.|+++.+.+.+|.+.++..
T Consensus 223 ~~~~i~v~Dva~a~~~~~~~~~~---~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 299 (372)
T 1db3_A 223 LRDWGHAKDYVKMQWMMLQQEQP---EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKP 299 (372)
T ss_dssp EECCEEHHHHHHHHHHTTSSSSC---CCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCT
T ss_pred eeeeeEHHHHHHHHHHHHhcCCC---ceEEEcCCCceeHHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 99999999999999998876542 69999999999999999999999997654221
Q ss_pred -------cc--CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 340 -------LS--RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 340 -------~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.+ ..+.......+|++|++++|||+|++ +++|+|+++++||+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 353 (372)
T 1db3_A 300 GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEI-TLREMVSEMVANDLEAA 353 (372)
T ss_dssp TCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred ccceeeccccccCCCchhhhccCHHHHHHHhCCcccc-CHHHHHHHHHHHHHHhh
Confidence 01 12233445678999999999999998 89999999999998764
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=369.13 Aligned_cols=339 Identities=38% Similarity=0.651 Sum_probs=261.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+.+|+|||||||||||++|+++|+++|++|++++|.........+.+..+. ..++.++.+|+.+++++.+++++.++
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~ 85 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKI 85 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhCCC
Confidence 3456899999999999999999999999999999986544332222222221 24788999999999999999965589
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC----CCCCCCCCCCCCCChHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD----KMPITESTPQKPINPYGK 201 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~----~~~~~E~~~~~p~~~Y~~ 201 (393)
|+|||+|+......+...+...+++|+.++.+++++|++.+++++|++||.++||... ..+++|+.+..|.++|+.
T Consensus 86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~ 165 (699)
T 1z45_A 86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGH 165 (699)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHH
T ss_pred CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHH
Confidence 9999999976543334456778999999999999999999999999999999998642 357889989899999999
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC-CCceeEcCccccCCC
Q 016208 202 AKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI-IPGLKIRGTDYNTAD 278 (393)
Q Consensus 202 sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 278 (393)
+|+++|++++.++.+ .+++++++||+++|||++.+.+|+.+... .+.+++.+...+... .+ +.++|..+..++
T Consensus 166 sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 241 (699)
T 1z45_A 166 TKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGI---PNNLLPYMAQVAVGRREK-LYIFGDDYDSRD 241 (699)
T ss_dssp HHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSS---CCSHHHHHHHHHTTSSSC-CCCC------CC
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccc---hhHHHHHHHHHHhcCCCc-eEEeCCcccCCC
Confidence 999999999998876 69999999999999998665555432110 114566666655533 34 555543222336
Q ss_pred CccccccccHHHHHHHHHHHHhcC-----CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecC
Q 016208 279 GTCVRDYIDVTDLVDAHVLALANA-----KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSD 353 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a~~~~l~~~-----~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d 353 (393)
+++.++|||++|+|++++.+++.. ....+++||+++++.+|+.|+++.+++.+|.+.+....+....+.....+|
T Consensus 242 g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d 321 (699)
T 1z45_A 242 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAK 321 (699)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBC
T ss_pred CCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCC
Confidence 788999999999999999988742 122347999999999999999999999999887765555444555678899
Q ss_pred HHHHHhhCCCceeccCHHHHHHHHHHHHHhccCCCCCC
Q 016208 354 PSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391 (393)
Q Consensus 354 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~~ 391 (393)
++|++++|||+|++ +++|+|+++++|++++..+|+..
T Consensus 322 ~~ka~~~LG~~p~~-~l~egl~~~~~w~~~~~~~~~~~ 358 (699)
T 1z45_A 322 PDRAKRELKWQTEL-QVEDSCKDLWKWTTENPFGYQLR 358 (699)
T ss_dssp CHHHHHHTCCCCCC-CHHHHHHHHHHHHHHCTTCSCCT
T ss_pred HHHHHHhcCCCCCC-CHHHHHHHHHHHHHhCCcchhhh
Confidence 99999999999999 89999999999999998888753
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=337.76 Aligned_cols=316 Identities=24% Similarity=0.288 Sum_probs=251.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|||||||||||++|+++|+++|++|++++|....... ..+..+.. ..++.++.+|+.|.+++.++++..++|+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGI-ENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTC-TTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccc-cCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 35799999999999999999999999999999986543221 12222211 2478899999999999999996557899
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
|||+||......+..++...+++|+.++.+++++|.+.++ +++||+||.++||.....+++|+.+..|.++|+.+|..+
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 158 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFG 158 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHHHHH
Confidence 9999997654434567788999999999999999998886 899999999999988777899999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|.+++.++.+.+++++++|+.++|||+....+ + ...+..++..+..+.......| ++...++++
T Consensus 159 e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 222 (345)
T 2z1m_A 159 HWITVNYREAYNMFACSGILFNHESPLRGIEF-------V---TRKITYSLARIKYGLQDKLVLG------NLNAKRDWG 222 (345)
T ss_dssp HHHHHHHHHHHCCCEEEEEECCEECTTSCTTS-------H---HHHHHHHHHHHHTTSCSCEEES------CTTCEECCE
T ss_pred HHHHHHHHHHhCCceEeeeeeeecCCCCCCcc-------h---hHHHHHHHHHHHcCCCCeeeeC------CCCceeeeE
Confidence 99999998888999999999999999743110 0 0122333444444443133344 678889999
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceE-------------------Ecc--CCCC
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE-------------------YLS--RRPG 345 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~--~~~~ 345 (393)
|++|+|++++.+++.+.. ++||+++++.+|+.|+++.+.+.+|.+.++. ..+ ..+.
T Consensus 223 ~v~Dva~a~~~~~~~~~~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 2z1m_A 223 YAPEYVEAMWLMMQQPEP---DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPA 299 (345)
T ss_dssp EHHHHHHHHHHHHTSSSC---CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSS
T ss_pred EHHHHHHHHHHHHhCCCC---ceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCC
Confidence 999999999999986542 5999999999999999999999999875432 111 1233
Q ss_pred CCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 346 DYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 346 ~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
......+|++|+++.|||+|++ +++|+|+++++|++++..
T Consensus 300 ~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~~~~~~ 339 (345)
T 2z1m_A 300 EVDILVGNPEKAMKKLGWKPRT-TFDELVEIMMEADLKRVR 339 (345)
T ss_dssp CCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHHHHH
T ss_pred CcceeecCHHHHHHHcCCcccC-CHHHHHHHHHHHHHHHhc
Confidence 3455678999999999999998 899999999999988753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=339.18 Aligned_cols=280 Identities=14% Similarity=0.152 Sum_probs=230.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|.||+||||| +||||++|+++|+++|++|++++|..... ..+++++.+|+.|.+++.++++ .++|
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~-~~~d 65 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------------PAGVQTLIADVTRPDTLASIVH-LRPE 65 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------------CTTCCEEECCTTCGGGCTTGGG-GCCS
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccCCceEEccCCChHHHHHhhc-CCCC
Confidence 3568999999 59999999999999999999999865431 2688999999999999999884 2499
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||+|+.. ..++...+++|+.++.+++++|++.++++|||+||.++||...+.+++|+++..|.++|+.+|..+
T Consensus 66 ~vih~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 140 (286)
T 3gpi_A 66 ILVYCVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEA 140 (286)
T ss_dssp EEEECHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHH
T ss_pred EEEEeCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHH
Confidence 999999864 245667788999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|++ +.+ ++++++||+++|||+.. . ++..+.. .. . .+ +++..++|+
T Consensus 141 E~~-~~~-----~~~~ilR~~~v~G~~~~---------------~----~~~~~~~-~~-~--~~------~~~~~~~~i 185 (286)
T 3gpi_A 141 EAL-LAA-----YSSTILRFSGIYGPGRL---------------R----MIRQAQT-PE-Q--WP------ARNAWTNRI 185 (286)
T ss_dssp HHH-GGG-----SSEEEEEECEEEBTTBC---------------H----HHHHTTC-GG-G--SC------SSBCEECEE
T ss_pred HHH-Hhc-----CCeEEEecccccCCCch---------------h----HHHHHHh-cc-c--CC------CcCceeEEE
Confidence 999 553 89999999999998632 2 2333333 22 1 12 688899999
Q ss_pred cHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCce
Q 016208 287 DVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTA 365 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 365 (393)
|++|+|++++.+++.+. ...+++||+++++.+|+.|+++.+.+.+|.+.++...+ .......+|++|++ .|||+|
T Consensus 186 ~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~~k~~-~lG~~p 261 (286)
T 3gpi_A 186 HRDDGAAFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSNARLL-ASGYQL 261 (286)
T ss_dssp EHHHHHHHHHHHHHHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECCHHHH-HTTCCC
T ss_pred EHHHHHHHHHHHHhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeHHHHH-HcCCCC
Confidence 99999999999999741 12247999999999999999999999999887655433 44567789999998 899999
Q ss_pred eccCHHHHHHHHHHHHHhcc
Q 016208 366 RFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 366 ~~~~~~e~l~~~~~~~~~~~ 385 (393)
++++++|+|+++++|++...
T Consensus 262 ~~~~l~e~l~~~~~~~~~~~ 281 (286)
T 3gpi_A 262 IYPDYVSGYGALLAAMREGH 281 (286)
T ss_dssp SSCSHHHHHHHHHHHHTC--
T ss_pred cCCcHHHHHHHHHHHHhccc
Confidence 98679999999999997654
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=343.25 Aligned_cols=315 Identities=22% Similarity=0.258 Sum_probs=247.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCc-hhhhhh-hhhcCCCC-ccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNM-GAVKVL-QELFPQPG-QLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|+|||||||||||++|+++|+++|++|++++|...... ...+.+ ........ ++.++.+|+.|.+++.++++..++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 69999999999999999999999999999998654311 001111 00000012 7889999999999999999655689
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-----EEEEeecceeecCCCCCCCCCCCCCCCCChHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-----TLIYSSTCATYGEPDKMPITESTPQKPINPYGK 201 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-----~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~ 201 (393)
+|||+|+......+..++...+++|+.++.+++++|.+.+++ +|||+||.++||.... +++|+++..|.++|+.
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~~~~~~Y~~ 187 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAA 187 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCCCCCSHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCCCCCCchHH
Confidence 999999976543334567888999999999999999988765 9999999999998776 8999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|..+|.+++.++.+.+++++++|++++|||+....+- ...+..++..+..+.+.....| ++++
T Consensus 188 sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~g------~~~~ 251 (381)
T 1n7h_A 188 SKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFV----------TRKITRALGRIKVGLQTKLFLG------NLQA 251 (381)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSH----------HHHHHHHHHHHHHTSCCCEEES------CTTC
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcch----------hHHHHHHHHHHHcCCCCeEEeC------CCCc
Confidence 99999999999988889999999999999997432100 0122333444444443133445 7888
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc--eEEcc--CCCCCCcceecCHHHH
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--VEYLS--RRPGDYAEVYSDPSKI 357 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~ 357 (393)
.++|+|++|+|++++.+++.+.. ++||+++++.+|+.|+++.+.+.+|.+.+ ....+ ..+.......+|++|+
T Consensus 252 ~~~~v~v~Dva~a~~~~~~~~~~---~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 328 (381)
T 1n7h_A 252 SRDWGFAGDYVEAMWLMLQQEKP---DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 328 (381)
T ss_dssp EEECEEHHHHHHHHHHHHTSSSC---CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred eeeeEEHHHHHHHHHHHHhCCCC---CeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHH
Confidence 99999999999999999986542 69999999999999999999999998643 22222 2233445677899999
Q ss_pred HhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 358 RDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 358 ~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
++.|||+|++ +++++|+++++||+++.
T Consensus 329 ~~~lG~~p~~-~l~e~l~~~~~~~~~~~ 355 (381)
T 1n7h_A 329 KEVLGWKPQV-GFEKLVKMMVDEDLELA 355 (381)
T ss_dssp HHHHCCCCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcccC-CHHHHHHHHHHHHHhhc
Confidence 9999999988 89999999999998753
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=334.09 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=232.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.||+|||||||||||++|+++|+++|++|++++|....... +.. .+++++.+|+.|.+++.+++ .++|+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~~-----~~~~~~~~Dl~d~~~~~~~~--~~~d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----LAY-----LEPECRVAEMLDHAGLERAL--RGLDG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----GGG-----GCCEEEECCTTCHHHHHHHT--TTCSE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----hcc-----CCeEEEEecCCCHHHHHHHH--cCCCE
Confidence 44799999999999999999999999999999986543221 111 37889999999999999999 68999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC--CCCCCCCCCCC----CChHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK--MPITESTPQKP----INPYGK 201 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~--~~~~E~~~~~p----~~~Y~~ 201 (393)
|||+|+.... ...++...+++|+.++.+++++|.+.++++|||+||.++|+.... .+ +|+++..| .++|+.
T Consensus 81 vih~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~~~p~~~~~~~Y~~ 157 (342)
T 2x4g_A 81 VIFSAGYYPS--RPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLFYDSLPSGKSSYVL 157 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCCCSSCCTTSCHHHH
T ss_pred EEECCccCcC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCCCCccccccChHHH
Confidence 9999997542 345667789999999999999999999999999999999987654 34 99999999 899999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCC-CCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDP-EGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
+|+.+|.+++.++.. |++++++||+.+|||.. .. . +..++..+..+.+ ..+ ++
T Consensus 158 sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~--------------~-~~~~~~~~~~~~~-~~~---------~~ 211 (342)
T 2x4g_A 158 CKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGP--------------T-TGRVITAIGNGEM-THY---------VA 211 (342)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSC--------------S-TTHHHHHHHTTCC-CEE---------EC
T ss_pred HHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccc--------------c-HHHHHHHHHcCCC-ccc---------cC
Confidence 999999999999886 99999999999999964 10 2 3345555556554 332 34
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC---------------CC
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR---------------PG 345 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~---------------~~ 345 (393)
..++++|++|+|++++.+++.+.. +++||+++++ +|+.|+++.+.+.+|.+.+. ..+.+ .+
T Consensus 212 ~~~~~i~v~Dva~~~~~~~~~~~~--g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~ 287 (342)
T 2x4g_A 212 GQRNVIDAAEAGRGLLMALERGRI--GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG 287 (342)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHSCT--TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC------
T ss_pred CCcceeeHHHHHHHHHHHHhCCCC--CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhC
Confidence 678999999999999999987654 4799999998 99999999999999987765 33321 00
Q ss_pred -------C-----CcceecCHHHHHhhCCC-ceeccCHHHHHHHHHHHHHhc
Q 016208 346 -------D-----YAEVYSDPSKIRDELNW-TARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 346 -------~-----~~~~~~d~~k~~~~lG~-~p~~~~~~e~l~~~~~~~~~~ 384 (393)
. .....+|++|+++.||| +| + +++++|+++++||+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~-~~~~~l~~~~~~~~~~ 337 (342)
T 2x4g_A 288 QLPLLDETAIEVMAGGQFLDGRKAREELGFFST-T-ALDDTLLRAIDWFRDN 337 (342)
T ss_dssp ----------CCTTCCCCBCCHHHHHHHCCCCC-S-CHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHhcCcccChHHHHHhCCCCCC-C-CHHHHHHHHHHHHHHc
Confidence 1 23567899999999999 99 6 8999999999999876
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=333.88 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=241.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|+|||||||||||++|+++|+++ |++|++++|...... +. .++.++.+|+.|.+++.+++++.++|+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~~D~~d~~~~~~~~~~~~~d~ 71 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VV------NSGPFEVVNALDFNQIEHLVEVHKITD 71 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HH------HSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----cc------CCCceEEecCCCHHHHHHHHhhcCCCE
Confidence 78999999999999999999999 899999998654321 10 357889999999999999996558999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC-CCCCCCCCCCCCCChHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD-KMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
|||+|+..... ...++...+++|+.++.+++++|++.+++++||+||.++|+... ..+.+|+.+..|.++|+.+|..+
T Consensus 72 vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~ 150 (312)
T 2yy7_A 72 IYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAG 150 (312)
T ss_dssp EEECCCCCHHH-HHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHH
T ss_pred EEECCccCCCc-hhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHH
Confidence 99999975432 23567788999999999999999999999999999999998754 35788999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|.+++.++.+.+++++++||+.+|||...+..+. ...+...+...+..+. +.+.+ ++++.++|+
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~i 214 (312)
T 2yy7_A 151 ERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGT--------TDYAVDIFYKAIADKK--YECFL------SSETKMPMM 214 (312)
T ss_dssp HHHHHHHHHHHCCEEECEEECEEECSSSCCCSCT--------TTHHHHHHHHHHHTSE--EEESS------CTTCCEEEE
T ss_pred HHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCch--------hhhHHHHHHHHHcCCC--eEEec------CCCceeeee
Confidence 9999999888899999999999999864211000 0024455555555443 55555 788899999
Q ss_pred cHHHHHHHHHHHHhcCCCC--CcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCC---CCcceecCHHHHHhhC
Q 016208 287 DVTDLVDAHVLALANAKPG--KVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG---DYAEVYSDPSKIRDEL 361 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~--~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~d~~k~~~~l 361 (393)
|++|+|++++.+++.+... .+++||+++ +.+|+.|+++.+.+.+| ..++...+.... ......+|++|+++.|
T Consensus 215 ~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (312)
T 2yy7_A 215 YMDDAIDATINIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIP-EFTITYEPDFRQKIADSWPASIDDSQAREDW 292 (312)
T ss_dssp EHHHHHHHHHHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCT-TCEEEECCCTHHHHHTTSCSSBCCHHHHHHH
T ss_pred eHHHHHHHHHHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHHCC-CCceEeccCccccccccccccCCHHHHHHHc
Confidence 9999999999999865431 136999986 78999999999999998 333333332110 1123468999999999
Q ss_pred CCceeccCHHHHHHHHHHHHH
Q 016208 362 NWTARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~ 382 (393)
||+|++ +++|+|+++++||+
T Consensus 293 G~~p~~-~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 293 DWKHTF-DLESMTKDMIEHLS 312 (312)
T ss_dssp CCCCCC-CHHHHHHHHHHHHC
T ss_pred CCCCCC-CHHHHHHHHHHHhC
Confidence 999999 89999999999985
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=333.84 Aligned_cols=304 Identities=21% Similarity=0.287 Sum_probs=243.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-- 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 123 (393)
+.+|+|||||||||||++|+++|+++| ++|++++|...... ...+ .++. +.+|+.+.+.+.++++..
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~-------~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL-------VDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT-------TTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc-------cCce-EeeecCcHHHHHHHHhhccc
Confidence 345789999999999999999999999 99999988543321 1111 1233 678999999999988421
Q ss_pred -CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHH
Q 016208 124 -AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA 202 (393)
Q Consensus 124 -~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~s 202 (393)
++|+|||+|+.... ...++...+++|+.++.+++++|.+.++ +|||+||.++||.....+++|+++..|.++|+.+
T Consensus 114 ~~~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~s 190 (357)
T 2x6t_A 114 GDVEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYS 190 (357)
T ss_dssp SSCCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHH
T ss_pred CCCCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHH
Confidence 69999999997654 3457788999999999999999999998 9999999999998777789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc-
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC- 281 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~- 281 (393)
|..+|.+++.++.+.+++++++||++||||+..... ....++..++..+..+.+ +.+.+ ++.+
T Consensus 191 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~ 254 (357)
T 2x6t_A 191 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG---------SMASVAFHLNTQLNNGES-PKLFE------GSENF 254 (357)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCG---------GGSCHHHHHHHHHHTTCC-CEEET------TGGGC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCc---------ccchHHHHHHHHHHcCCC-cEEeC------CCCcc
Confidence 999999999998888999999999999999753210 011566777777777776 66666 7788
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCC-cceEEccCC--CCCCcceecCHHHHH
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-IKVEYLSRR--PGDYAEVYSDPSKIR 358 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~--~~~~~~~~~d~~k~~ 358 (393)
.++|+|++|+|++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+ ++....+.. ........+|++|++
T Consensus 255 ~~~~i~v~Dva~ai~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 331 (357)
T 2x6t_A 255 KRDFVYVGDVADVNLWFLENGV---SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLR 331 (357)
T ss_dssp EECEEEHHHHHHHHHHHHHHCC---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHH
T ss_pred eEccEEHHHHHHHHHHHHhcCC---CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHH
Confidence 8999999999999999998765 3799999999999999999999999987 333222221 112234678999997
Q ss_pred hhCCC-ceeccCHHHHHHHHHHHHHhc
Q 016208 359 DELNW-TARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 359 ~~lG~-~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+ ||| .|.+ +++|+|+++++||+++
T Consensus 332 ~-lG~~~~~~-~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 332 A-AGYDKPFK-TVAEGVTEYMAWLNRD 356 (357)
T ss_dssp H-TTCCCCCC-CHHHHHHHHHHHHC--
T ss_pred H-cCCCCCCC-CHHHHHHHHHHHHhhc
Confidence 6 999 7777 8999999999999754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-44 Score=329.81 Aligned_cols=283 Identities=16% Similarity=0.150 Sum_probs=236.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+ +|++|++++|... ++.+|+.|.+++.++++..++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~--------------------~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK--------------------EFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS--------------------SSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc--------------------cccccCCCHHHHHHHHHhcCCCEEE
Confidence 589999999999999999999 8999999987431 2358999999999999544699999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+......+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+++..|.++|+.+|..+|++
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 138 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKA 138 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence 99997654434567888999999999999999999887 89999999999988777899999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++.++ .+++++||+++|||+.. .++..++..+..+.+ +.+.| ++.++++|++
T Consensus 139 ~~~~~----~~~~ilRp~~v~G~~~~---------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 190 (299)
T 1n2s_A 139 LQDNC----PKHLIFRTSWVYAGKGN---------------NFAKTMLRLAKERQT-LSVIN--------DQYGAPTGAE 190 (299)
T ss_dssp HHHHC----SSEEEEEECSEECSSSC---------------CHHHHHHHHHHHCSE-EEEEC--------SCEECCEEHH
T ss_pred HHHhC----CCeEEEeeeeecCCCcC---------------cHHHHHHHHHhcCCC-EEeec--------CcccCCeeHH
Confidence 99864 38999999999999643 466777777777765 65554 3789999999
Q ss_pred HHHHHHHHHHhcCC--CCCcceEEecCCCcccHHHHHHHHHHHhCCCc------ceEEccC-----CCCCCcceecCHHH
Q 016208 290 DLVDAHVLALANAK--PGKVGIYNVGTGKGRSVKEFVEACKKATGVNI------KVEYLSR-----RPGDYAEVYSDPSK 356 (393)
Q Consensus 290 Dva~a~~~~l~~~~--~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~------~~~~~~~-----~~~~~~~~~~d~~k 356 (393)
|+|++++.+++.+. ...+++||+++++.+|+.|+++.+.+.+|.+. .+...+. .........+|++|
T Consensus 191 Dva~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 270 (299)
T 1n2s_A 191 LLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEK 270 (299)
T ss_dssp HHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHH
T ss_pred HHHHHHHHHHHHhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHH
Confidence 99999999998652 20237999999999999999999999998762 3333221 12234567899999
Q ss_pred HHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 357 IRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 357 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+++.|||+|+ +++|+|+++++||+++
T Consensus 271 ~~~~lG~~p~--~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 271 FQRNFDLILP--QWELGVKRMLTEMFTT 296 (299)
T ss_dssp HHHHHTCCCC--BHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCCC--CHHHHHHHHHHHHHhc
Confidence 9999999997 6999999999999875
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=323.14 Aligned_cols=277 Identities=19% Similarity=0.160 Sum_probs=234.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..|+|||||||||||++|+++|+++|++|++++|. .+|+.|.+++.++++..++|+
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d~ 66 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPNV 66 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCCE
Confidence 34899999999999999999999999999999873 179999999999995448999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|||+|+......+..++...+++|+.++.+++++|.+.++ ++||+||.++|+.....+++|+++..|.++|+.+|..+|
T Consensus 67 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E 145 (292)
T 1vl0_A 67 VINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGE 145 (292)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHH
T ss_pred EEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHH
Confidence 9999997654333467788999999999999999999888 999999999999877678999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
.+++.++ .+++++||+.|||| .. .++..++..+..+.+ +.+.| ++.++++|
T Consensus 146 ~~~~~~~----~~~~~lR~~~v~G~-~~---------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~ 196 (292)
T 1vl0_A 146 NFVKALN----PKYYIVRTAWLYGD-GN---------------NFVKTMINLGKTHDE-LKVVH--------DQVGTPTS 196 (292)
T ss_dssp HHHHHHC----SSEEEEEECSEESS-SS---------------CHHHHHHHHHHHCSE-EEEES--------SCEECCEE
T ss_pred HHHHhhC----CCeEEEeeeeeeCC-Cc---------------ChHHHHHHHHhcCCc-EEeec--------CeeeCCcc
Confidence 9999864 36999999999998 22 566666666666655 55543 46789999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC-----CCCCcceecCHHHHHhhCC
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR-----PGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~d~~k~~~~lG 362 (393)
++|+|++++.+++.+ . +++||+++++.+|+.|+++.+.+.+|.+.++...+.. ........+|++|+++.||
T Consensus 197 v~Dva~~~~~~~~~~-~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 273 (292)
T 1vl0_A 197 TVDLARVVLKVIDEK-N--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTG 273 (292)
T ss_dssp HHHHHHHHHHHHHHT-C--CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC-C--CcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcC
Confidence 999999999999876 2 4799999999999999999999999988765544422 2234567899999999999
Q ss_pred CceeccCHHHHHHHHHHHHHh
Q 016208 363 WTARFTDLQGSLQIAWRWQKT 383 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~ 383 (393)
|+|+ +++++|+++++||++
T Consensus 274 ~~p~--~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 274 DITR--EWKESLKEYIDLLQM 292 (292)
T ss_dssp CCCC--BHHHHHHHHHHHHTC
T ss_pred CCCC--CHHHHHHHHHHHhcC
Confidence 9997 799999999999963
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=329.07 Aligned_cols=300 Identities=22% Similarity=0.303 Sum_probs=225.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---CCCc
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---NAFD 126 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~d 126 (393)
+|||||||||||++|+++|+++| ++|++++|...... ...+. ++. +.+|+.+.+.+.++++. .++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV-------DLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH-------TSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC-------cce-eccccccHHHHHHHHhccccCCCc
Confidence 59999999999999999999999 99999988543321 11111 222 67899999999998842 1599
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||+|+.... ...++...+++|+.++.+++++|++.++ ++||+||.++||.....+++|+++..|.++|+.+|..+
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~ 147 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLF 147 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 99999997654 3567788999999999999999999999 99999999999987766899999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc-cccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC-VRDY 285 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~~~~ 285 (393)
|.+++.++.+.|++++++||+.+|||+..... ....++..++..+..+.+ +.+.+ ++++ .++|
T Consensus 148 e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~------~g~~~~~~~ 211 (310)
T 1eq2_A 148 DEYVRQILPEANSQIVGFRYFNVYGPREGHKG---------SMASVAFHLNTQLNNGES-PKLFE------GSENFKRDF 211 (310)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCGGGG---------GGSCHHHHHHHHHHC--------------------CBCE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcEECcCCCCCC---------ccchHHHHHHHHHHcCCC-cEEec------CCCcceEcc
Confidence 99999998888999999999999999743100 011567777788877776 66665 7888 9999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCC-cceEEccCC--CCCCcceecCHHHHHhhCC
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-IKVEYLSRR--PGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~--~~~~~~~~~d~~k~~~~lG 362 (393)
+|++|+|++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+ ++....+.. ........+|++|+++ ||
T Consensus 212 i~v~Dva~~~~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG 287 (310)
T 1eq2_A 212 VYVGDVADVNLWFLENGV---SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRA-AG 287 (310)
T ss_dssp EEHHHHHHHHHHHHHHCC---CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHH-TT
T ss_pred EEHHHHHHHHHHHHhcCC---CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHh-cC
Confidence 999999999999998765 3799999999999999999999999977 322222211 1112345688999975 99
Q ss_pred C-ceeccCHHHHHHHHHHHHHhc
Q 016208 363 W-TARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 363 ~-~p~~~~~~e~l~~~~~~~~~~ 384 (393)
| .|.+ +++|+|+++++||+++
T Consensus 288 ~~~~~~-~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 288 YDKPFK-TVAEGVTEYMAWLNRD 309 (310)
T ss_dssp CCCCCC-CHHHHHHHHHHHTC--
T ss_pred CCCCCC-CHHHHHHHHHHHHHhc
Confidence 9 7877 8999999999999764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=329.95 Aligned_cols=294 Identities=23% Similarity=0.334 Sum_probs=236.4
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
+....+|+|||||||||||++|+++|+++|++|++++|........ +..+ .++.++.+|+.|.+++.+++++.
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~l----~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREV---LPPV----AGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGG---SCSC----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhh---hhcc----CCceEEEeeCCCHHHHHHHHhhc
Confidence 3455668999999999999999999999999999999854332211 1111 47889999999999999999433
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCC--CCCCCCCCCCCChHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKM--PITESTPQKPINPYGK 201 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~p~~~Y~~ 201 (393)
++|+|||+||..... +..++. +++|+.++.+++++|.+.+++++|++||.++|+..... +++|++ .|.++|+.
T Consensus 88 ~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~--~~~~~Y~~ 162 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT--APFTSYGI 162 (330)
T ss_dssp CCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC--CCCSHHHH
T ss_pred CCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC--CCCChHHH
Confidence 899999999976543 223333 89999999999999999899999999999999876544 788887 77899999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|+.+|.+++.+ +++++++||+++|||+... .++..++..+..+.. + .+ ++.
T Consensus 163 sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~--------------~~~~~~~~~~~~~~~-~--~~------~~~- 214 (330)
T 2pzm_A 163 SKTAGEAFLMMS----DVPVVSLRLANVTGPRLAI--------------GPIPTFYKRLKAGQK-C--FC------SDT- 214 (330)
T ss_dssp HHHHHHHHHHTC----SSCEEEEEECEEECTTCCS--------------SHHHHHHHHHHTTCC-C--CE------ESC-
T ss_pred HHHHHHHHHHHc----CCCEEEEeeeeeECcCCCC--------------CHHHHHHHHHHcCCE-E--eC------CCC-
Confidence 999999998874 8999999999999997411 455666666555432 2 22 455
Q ss_pred ccccccHHHHHH-HHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHH---
Q 016208 282 VRDYIDVTDLVD-AHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKI--- 357 (393)
Q Consensus 282 ~~~~i~v~Dva~-a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~--- 357 (393)
.++++|++|+|+ +++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+ ++...+.+. +.....+|++|+
T Consensus 215 ~~~~i~~~Dva~~a~~~~~~~~~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~~k~~~~ 289 (330)
T 2pzm_A 215 VRDFLDMSDFLAIADLSLQEGRP---TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSVVLDPSK 289 (330)
T ss_dssp EECEEEHHHHHHHHHHHTSTTCC---CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEECBCCHH
T ss_pred EecceeHHHHHHHHHHHHhhcCC---CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCHHHHhhc
Confidence 789999999999 9999888644 4799999999999999999999999987 443333333 445667788888
Q ss_pred --HhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 358 --RDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 358 --~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
++ |||+|++ +++++|+++++||+++
T Consensus 290 ~l~~-lG~~p~~-~~~~~l~~~~~~~~~~ 316 (330)
T 2pzm_A 290 TETE-FGWKAKV-DFKDTITGQLAWYDKY 316 (330)
T ss_dssp HHHH-HCCCCCC-CHHHHHHHHHHHHHHH
T ss_pred hHHH-cCCcccC-CHHHHHHHHHHHHHhh
Confidence 77 9999998 8999999999999876
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=324.20 Aligned_cols=291 Identities=22% Similarity=0.242 Sum_probs=231.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...||+|||||||||||++|+++|+++|++|++++|...... +.+..+ .++.++.+|+.|.+++.++++..++
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~l~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR---EHLKDH----PNLTFVEGSIADHALVNQLIGDLQP 90 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGSCCC----TTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccch---hhHhhc----CCceEEEEeCCCHHHHHHHHhccCC
Confidence 456789999999999999999999999999999998643322 111111 4788999999999999999954459
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec----CCCCCCCCCCCCCCCC-ChHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG----EPDKMPITESTPQKPI-NPYG 200 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg----~~~~~~~~E~~~~~p~-~~Y~ 200 (393)
|+|||+|+..... +..++. +++|+.++.+++++|.+.++++||++||.++|+ .... +++|++ .|. ++|+
T Consensus 91 D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~--~p~~~~Y~ 164 (333)
T 2q1w_A 91 DAVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR--NPANSSYA 164 (333)
T ss_dssp SEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC--CCTTCHHH
T ss_pred cEEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC--CCCCCchH
Confidence 9999999976543 223333 899999999999999999999999999999998 5544 788887 677 8999
Q ss_pred HHHHHHHHHHHH-HHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCC
Q 016208 201 KAKKMSEDIIID-FSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279 (393)
Q Consensus 201 ~sK~~~E~~~~~-~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 279 (393)
.+|..+|.+++. ++ +++++||+++|||+... .+++.++..+..+.+ +. + +
T Consensus 165 ~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~~--------------~~~~~~~~~~~~~~~-~~--------~-~ 215 (333)
T 2q1w_A 165 ISKSANEDYLEYSGL-----DFVTFRLANVVGPRNVS--------------GPLPIFFQRLSEGKK-CF--------V-T 215 (333)
T ss_dssp HHHHHHHHHHHHHTC-----CEEEEEESEEESTTCCS--------------SHHHHHHHHHHTTCC-CE--------E-E
T ss_pred HHHHHHHHHHHhhhC-----CeEEEeeceEECcCCcC--------------cHHHHHHHHHHcCCe-ee--------C-C
Confidence 999999999988 64 79999999999997210 466666666655442 21 1 4
Q ss_pred ccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC----CCCcceecCHH
Q 016208 280 TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP----GDYAEVYSDPS 355 (393)
Q Consensus 280 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~ 355 (393)
...++++|++|+|++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+ ++...+... .......+|++
T Consensus 216 ~~~~~~i~v~Dva~ai~~~~~~~~---g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~ 291 (333)
T 2q1w_A 216 KARRDFVFVKDLARATVRAVDGVG---HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSR 291 (333)
T ss_dssp ECEECEEEHHHHHHHHHHHHTTCC---CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHH
T ss_pred CceEeeEEHHHHHHHHHHHHhcCC---CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHH
Confidence 567899999999999999998655 4799999999999999999999999987 332222111 11246779999
Q ss_pred HHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 356 KIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 356 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|+++. ||+|++ +++++|+++++||+++
T Consensus 292 k~~~~-G~~p~~-~~~~~l~~~~~~~~~~ 318 (333)
T 2q1w_A 292 TIQDF-GKIEFT-PLKETVAAAVAYFREY 318 (333)
T ss_dssp HHHHH-CCCCCC-CHHHHHHHHHHHHHHH
T ss_pred HHHhc-CCCcCC-CHHHHHHHHHHHHHHH
Confidence 99988 999998 8999999999999876
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=326.04 Aligned_cols=293 Identities=17% Similarity=0.131 Sum_probs=209.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|+|||||||||||++|+++|+++|++|++++|.... ++ ++.+|+.+++++.++++..++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 3799999999999999999999999999999874321 12 677999999999999864469999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+......+..++...+++|+.++.+++++|.+.++ ++||+||.++|+. ...+++|+++..|.++|+.+|..+|.
T Consensus 65 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~ 142 (315)
T 2ydy_A 65 VHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG-TNPPYREEDIPAPLNLYGKTKLDGEK 142 (315)
T ss_dssp EECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS-SSCSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred EECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC-CCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 999997655444567788899999999999999999887 9999999999988 45689999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh-CCCCceeEcCccccCCCCcccccccc
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR-GIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+++.+ +++++++||+.|||+..... ..++..++..+. .+.+ +.+. +++.++++|
T Consensus 143 ~~~~~----~~~~~~lR~~~v~G~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~i~ 197 (315)
T 2ydy_A 143 AVLEN----NLGAAVLRIPILYGEVEKLE------------ESAVTVMFDKVQFSNKS-ANMD--------HWQQRFPTH 197 (315)
T ss_dssp HHHHH----CTTCEEEEECSEECSCSSGG------------GSTTGGGHHHHHCCSSC-EEEE--------CSSBBCCEE
T ss_pred HHHHh----CCCeEEEeeeeeeCCCCccc------------ccHHHHHHHHHHhcCCC-eeec--------cCceECcEE
Confidence 99885 46789999999999875310 024444555565 5555 4443 356789999
Q ss_pred HHHHHHHHHHHHhcC--CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccC----CCCCCcceecCHHHHHhh
Q 016208 288 VTDLVDAHVLALANA--KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSR----RPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 288 v~Dva~a~~~~l~~~--~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~----~~~~~~~~~~d~~k~~~~ 360 (393)
++|+|++++.+++.+ ....+++||+++++.+|+.|+++.+.+.+|.+.+ +...+. .........+|++|+++.
T Consensus 198 v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 277 (315)
T 2ydy_A 198 VKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT
T ss_pred HHHHHHHHHHHHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc
Confidence 999999999998753 1123479999999999999999999999998765 333332 122344678999999987
Q ss_pred CCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
||+|++ +++++|+++++||+++.++
T Consensus 278 -G~~p~~-~~~~~l~~~~~~~~~~~~~ 302 (315)
T 2ydy_A 278 -GIGQRT-PFRIGIKESLWPFLIDKRW 302 (315)
T ss_dssp -TCCCCC-CHHHHHHHHHGGGCC----
T ss_pred -CCCCCC-CHHHHHHHHHHHHccchhh
Confidence 999999 7999999999999887543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=320.97 Aligned_cols=302 Identities=20% Similarity=0.253 Sum_probs=239.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|||||||||||++|+++|+++ |++|++++|..... .++.++.+|+.|++++.++++..++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------------~~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------------GGIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC--------------TTCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc--------------cCceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 5999999999999999999998 89999998854321 1567899999999999999965589999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC-CCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP-DKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
||+|+..... ...++...+++|+.++.+++++|++.+++++||+||.++|+.. ...+.+|+.+..|.++|+.+|..+|
T Consensus 67 ih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e 145 (317)
T 3ajr_A 67 FHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAE 145 (317)
T ss_dssp EECCCCCHHH-HHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHH
T ss_pred EECCcccCCc-cccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHH
Confidence 9999975421 2356778899999999999999999999999999999999875 3457888889999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
.+++.++++.+++++++||+.+||+...+..+. ...+...+...+..+ + +...+ ++++.++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~-~-~~~~~------~~~~~~~~i~ 209 (317)
T 3ajr_A 146 LLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGT--------TDYAVEIFYYAVKRE-K-YKCYL------APNRALPMMY 209 (317)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECSSSCCCSCS--------STHHHHHHHHHHTTC-C-EEECS------CTTCCEEEEE
T ss_pred HHHHHHHHhcCCeEEEEecCcEeccCCCCCCcc--------hhHHHHHHHHHHhCC-C-ceeec------CccceeeeeE
Confidence 999998888899999999999999863211000 002344444444443 3 55555 6788899999
Q ss_pred HHHHHHHHHHHHhcCCCC--CcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC---CCCcceecCHHHHHhhCC
Q 016208 288 VTDLVDAHVLALANAKPG--KVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP---GDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~--~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~lG 362 (393)
++|+|++++.+++.+... .+++||+++ ..+|+.|+++.+.+.+| ..++...+... .......+|++|+++.||
T Consensus 210 v~Dva~a~~~~l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG 287 (317)
T 3ajr_A 210 MPDALKALVDLYEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIP-EFEIEYKEDFRDKIAATWPESLDSSEASNEWG 287 (317)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCC-SCCEEECCCHHHHHHTTSCSCBCCHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccccccCceEecCC-ccccHHHHHHHHHHHCC-ccccccccccchhhccccccccCHHHHHHHcC
Confidence 999999999999865421 236999985 57999999999999988 33333322100 011234689999999999
Q ss_pred CceeccCHHHHHHHHHHHHHhccC
Q 016208 363 WTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
|+|++ +++++|+++++|++++..
T Consensus 288 ~~p~~-~~~~~l~~~~~~~~~~~~ 310 (317)
T 3ajr_A 288 FSIEY-DLDRTIDDMIDHISEKLG 310 (317)
T ss_dssp CCCCC-CHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-CHHHHHHHHHHHHHhhhc
Confidence 99999 899999999999988754
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=349.32 Aligned_cols=316 Identities=21% Similarity=0.263 Sum_probs=249.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH-HHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA-VNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~~ 124 (393)
+.||+|||||||||||++|+++|+++ |++|++++|....... +. ...+++++.+|+.+.++ +.+++ .+
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~-------~~-~~~~v~~v~~Dl~d~~~~~~~~~--~~ 382 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR-------FL-NHPHFHFVEGDISIHSEWIEYHV--KK 382 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG-------GT-TCTTEEEEECCTTTCHHHHHHHH--HH
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh-------hc-cCCceEEEECCCCCcHHHHHHhh--cC
Confidence 46789999999999999999999998 8999999986543221 11 12578999999999765 77777 58
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC-------CCCC
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-------KPIN 197 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-------~p~~ 197 (393)
+|+|||+||.........++...+++|+.++.+++++|.+.+ +++||+||.++||.....+++|+++. .|.+
T Consensus 383 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~ 461 (660)
T 1z7e_A 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRW 461 (660)
T ss_dssp CSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTH
T ss_pred CCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCC
Confidence 999999999765433345678899999999999999999988 89999999999998777788888753 4567
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
.|+.+|..+|.+++.++.+.|++++++||++||||+...... .....+.++..++..+..+.+ +.+.+
T Consensus 462 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~-~~~~g------ 529 (660)
T 1z7e_A 462 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA-----ARIGSSRAITQLILNLVEGSP-IKLID------ 529 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHH-----HTTTCSCHHHHHHHHHHHTCC-EEEEG------
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCcccccc-----ccccccchHHHHHHHHHcCCC-cEEeC------
Confidence 899999999999999988789999999999999997531000 000001456677777777777 66666
Q ss_pred CCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC-cccHHHHHHHHHHHhCCCcceEEccCC------------
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK-GRSVKEFVEACKKATGVNIKVEYLSRR------------ 343 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~------------ 343 (393)
++++.++|+|++|+|++++.+++.+. ...+++||+++++ .+|+.|+++.+.+.+|.+......+..
T Consensus 530 ~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 609 (660)
T 1z7e_A 530 GGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYY 609 (660)
T ss_dssp GGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHH
T ss_pred CCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccc
Confidence 67889999999999999999998653 1234799999886 899999999999999865322111111
Q ss_pred ---CCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 344 ---PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 344 ---~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
........+|++|++++|||+|++ +++++|+++++||+++..
T Consensus 610 ~~~~~~~~~~~~d~~ka~~~LG~~p~~-~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 610 GKGYQDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRTVD 654 (660)
T ss_dssp CTTCCCCSCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHTTSC
T ss_pred cccccchhhcccCHHHHHHhcCCCccC-cHHHHHHHHHHHHHhhcc
Confidence 123345678999999999999998 899999999999988754
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=318.31 Aligned_cols=305 Identities=17% Similarity=0.196 Sum_probs=242.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-------CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-------YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI 119 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 119 (393)
+.+|+|||||||||||++|+++|+++| ++|++++|....... ....++.++.+|+.|++++.++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~ 82 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEKL 82 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHHH
Confidence 466899999999999999999999999 899999986533221 0125788999999999999998
Q ss_pred HhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-----CcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 120 FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-----VKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 120 ~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
++ .++|+|||+|+.... .+..++...+++|+.++.+++++|.+.+ +++||++||.++|+.....+++|+++..
T Consensus 83 ~~-~~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~ 160 (342)
T 2hrz_A 83 VE-ARPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTT 160 (342)
T ss_dssp HH-TCCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCC
T ss_pred Hh-cCCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCC
Confidence 84 489999999997542 1235677889999999999999999876 7899999999999976556899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccC-CCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG-SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
|.++|+.+|..+|.+++.++.+.+++.+++|++.+|| |+... .. ...++..++.....+.+ +.+.+
T Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~------~~----~~~~~~~~~~~~~~~~~-~~~~~-- 227 (342)
T 2hrz_A 161 PLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPN------AA----ASGFFSNILREPLVGQE-AVLPV-- 227 (342)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCC------CS----GGGHHHHHHHHHHTTCC-EEECS--
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCc------ch----hHHHHHHHHHHHhcCCC-eeccC--
Confidence 9999999999999999999887889999999999999 54211 00 01466667777777776 55544
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCCC--CCcceEEecCCCcccHHHHHHHHHHHhCCCc--ceEEccCCC----C
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAKP--GKVGIYNVGTGKGRSVKEFVEACKKATGVNI--KVEYLSRRP----G 345 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~--~~~~~yni~~~~~~s~~el~~~i~~~~g~~~--~~~~~~~~~----~ 345 (393)
+++..++++|++|+|++++.+++.+.. ..+++||++ ++.+|+.|+++.+.+.+|.+. .+...+... .
T Consensus 228 ----~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 302 (342)
T 2hrz_A 228 ----PESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMC 302 (342)
T ss_dssp ----CTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHH
T ss_pred ----CCccceeeEehHHHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhh
Confidence 456677899999999999999986532 123699995 578999999999999999765 233322110 0
Q ss_pred CCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHH
Q 016208 346 DYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 346 ~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~ 382 (393)
......+|++|+++ |||+|++ +++|+|+++++||+
T Consensus 303 ~~~~~~~d~~k~~~-lG~~p~~-~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 303 EGWAPGFEAKRARE-LGFTAES-SFEEIIQVHIEDEL 337 (342)
T ss_dssp TTSCCCBCCHHHHH-TTCCCCS-SHHHHHHHHHHHHS
T ss_pred cccccccChHHHHH-cCCCCCC-CHHHHHHHHHHHhc
Confidence 11123579999998 9999998 89999999999997
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=312.33 Aligned_cols=269 Identities=16% Similarity=0.182 Sum_probs=217.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|||||| ||||++|+++|+++|++|++++|...... .+.. .+++++.+|+.|.+ + .++|+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~-----~~~~~~~~D~~d~~-----~--~~~d~v 67 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQME----AIRA-----SGAEPLLWPGEEPS-----L--DGVTHL 67 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHH----HHHH-----TTEEEEESSSSCCC-----C--TTCCEE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhh----hHhh-----CCCeEEEecccccc-----c--CCCCEE
Confidence 589999998 99999999999999999999998543221 1111 47999999999944 4 789999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA--HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
||+|+..... . ..+.+++++|++ .++++|||+||.++||.....+++|+++..|.++|+.+|+.+
T Consensus 68 i~~a~~~~~~----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 134 (286)
T 3ius_A 68 LISTAPDSGG----D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMA 134 (286)
T ss_dssp EECCCCBTTB----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHH
T ss_pred EECCCccccc----c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 9999975431 1 135789999998 678999999999999988877899999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|++++.+ .+++++++||+++||++... +..+..+.+ +.+.+ +.+.++|+
T Consensus 135 E~~~~~~---~~~~~~ilRp~~v~G~~~~~--------------------~~~~~~~~~-~~~~~-------~~~~~~~i 183 (286)
T 3ius_A 135 EQQWQAV---PNLPLHVFRLAGIYGPGRGP--------------------FSKLGKGGI-RRIIK-------PGQVFSRI 183 (286)
T ss_dssp HHHHHHS---TTCCEEEEEECEEEBTTBSS--------------------STTSSSSCC-CEEEC-------TTCCBCEE
T ss_pred HHHHHhh---cCCCEEEEeccceECCCchH--------------------HHHHhcCCc-cccCC-------CCcccceE
Confidence 9999986 58999999999999997431 112233444 44544 45789999
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc--CCCCC------CcceecCHHHHH
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS--RRPGD------YAEVYSDPSKIR 358 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~--~~~~~------~~~~~~d~~k~~ 358 (393)
|++|+|++++.+++.+.. +++||+++++++|+.|+++.+.+.+|.+.+..... ..... .....+|++|++
T Consensus 184 ~v~Dva~a~~~~~~~~~~--g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 261 (286)
T 3ius_A 184 HVEDIAQVLAASMARPDP--GAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIK 261 (286)
T ss_dssp EHHHHHHHHHHHHHSCCT--TCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHH
T ss_pred EHHHHHHHHHHHHhCCCC--CCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHH
Confidence 999999999999998764 36999999999999999999999999876643221 11111 245678999999
Q ss_pred hhCCCceeccCHHHHHHHHHHH
Q 016208 359 DELNWTARFTDLQGSLQIAWRW 380 (393)
Q Consensus 359 ~~lG~~p~~~~~~e~l~~~~~~ 380 (393)
+.|||+|++|+++|+|+++++.
T Consensus 262 ~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 262 EELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp HTTCCCCSCSSHHHHHHHHHHT
T ss_pred HHhCCCCCcCCHHHHHHHHHHh
Confidence 9999999986799999998764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=316.23 Aligned_cols=307 Identities=17% Similarity=0.118 Sum_probs=231.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEE-EccCCCHHHHHHHHhhCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADLGDAKAVNKIFAENA 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~ 124 (393)
.+.+|+|||||||||||++|+++|+++|++|++++|...........+.... ..+++++ .+|+.+.+++.+++ .+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~--~~ 83 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY--PGRFETAVVEDMLKQGAYDEVI--KG 83 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS--TTTEEEEECSCTTSTTTTTTTT--TT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC--CCceEEEEecCCcChHHHHHHH--cC
Confidence 3556899999999999999999999999999999885322211111111111 1468888 79999999999888 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHh-cCCcEEEEeecceeecCCC----CCCCCCCC--------
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA-HKVKTLIYSSTCATYGEPD----KMPITEST-------- 191 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~~~~V~~SS~~vyg~~~----~~~~~E~~-------- 191 (393)
+|+|||+|+..... .++...+++|+.++.+++++|.+ .+++++||+||.++|+... +.+++|++
T Consensus 84 ~d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 160 (342)
T 1y1p_A 84 AAGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp CSEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHH
T ss_pred CCEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhh
Confidence 99999999976542 46778999999999999999985 5788999999999986432 24678876
Q ss_pred --------CCCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 192 --------PQKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 192 --------~~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
+..|.++|+.+|..+|.+++.++.+. +++++++||+++|||....... +..+..++..+.
T Consensus 161 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~----------~~~~~~~~~~~~ 230 (342)
T 1y1p_A 161 AKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQ----------SGSTSGWMMSLF 230 (342)
T ss_dssp HHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTC----------CCHHHHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCC----------CccHHHHHHHHH
Confidence 23456789999999999999988764 7899999999999997542110 025667777777
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
.+.+ +.+.+ ++ +.++|+|++|+|++++.+++.+... ++.| +++++.+|+.|+++.+.+.+|.. .+. .+
T Consensus 231 ~~~~-~~~~~------~~-~~~~~v~v~Dva~a~~~~~~~~~~~-g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~~~-~~ 298 (342)
T 1y1p_A 231 NGEV-SPALA------LM-PPQYYVSAVDIGLLHLGCLVLPQIE-RRRV-YGTAGTFDWNTVLATFRKLYPSK-TFP-AD 298 (342)
T ss_dssp TTCC-CHHHH------TC-CSEEEEEHHHHHHHHHHHHHCTTCC-SCEE-EECCEEECHHHHHHHHHHHCTTS-CCC-CC
T ss_pred cCCC-ccccc------cC-CcCCEeEHHHHHHHHHHHHcCcccC-CceE-EEeCCCCCHHHHHHHHHHHCCCc-cCC-CC
Confidence 7766 44443 33 6789999999999999999865432 2344 45677899999999999999875 211 11
Q ss_pred CCCCCCcceecCHHHHHhhCCC---ceeccCHHHHHHHHHHHHH
Q 016208 342 RRPGDYAEVYSDPSKIRDELNW---TARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 342 ~~~~~~~~~~~d~~k~~~~lG~---~p~~~~~~e~l~~~~~~~~ 382 (393)
..........+|++|+++.||| .+.+ +++++|+++++||+
T Consensus 299 ~~~~~~~~~~~d~~k~~~~lg~~~~~~~~-~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 299 FPDQGQDLSKFDTAPSLEILKSLGRPGWR-SIEESIKDLVGSET 341 (342)
T ss_dssp CCCCCCCCCEECCHHHHHHHHHTTCCSCC-CHHHHHHHHHCCSC
T ss_pred CCccccccccCChHHHHHHHhhcccCCcC-CHHHHHHHHHHHhh
Confidence 1111122367899999998887 4555 89999999999875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=310.65 Aligned_cols=305 Identities=20% Similarity=0.222 Sum_probs=217.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+++|||||||||||++|+++|+++|++|+++.|....... ...+..+.....+++++.+|+.|.+++.+++ .++|+
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~ 80 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKK-VKHLLDLPKAETHLTLWKADLADEGSFDEAI--KGCTG 80 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHH-HHHHHTSTTHHHHEEEEECCTTSTTTTHHHH--TTCSE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHH-HHHHHhcccCCCeEEEEEcCCCCHHHHHHHH--cCCCE
Confidence 45799999999999999999999999999998885432111 1111111100135789999999999999999 78999
Q ss_pred EEEcccccCccCCccCh-HHHHHHHHHHHHHHHHHHHhcC-CcEEEEeeccee-ecCC-CCCCCCCCCCC---------C
Q 016208 128 VMHFAAVAYVGESTLEP-LRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCAT-YGEP-DKMPITESTPQ---------K 194 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~v-yg~~-~~~~~~E~~~~---------~ 194 (393)
|||+|+.... ...++ ...+++|+.++.+++++|.+.+ +++|||+||.++ |+.. ...+++|+.+. .
T Consensus 81 Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 158 (337)
T 2c29_D 81 VFHVATPMDF--ESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKM 158 (337)
T ss_dssp EEECCCCCCS--SCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred EEEeccccCC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCC
Confidence 9999986532 22333 3578999999999999999887 899999999874 4432 23356776532 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
|.++|+.+|.++|.+++.++...|++++++||++||||.....+. ..+....... .+.+ . .++
T Consensus 159 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-----------~~~~~~~~~~-~g~~-~-~~~--- 221 (337)
T 2c29_D 159 TAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-----------PSLITALSPI-TGNE-A-HYS--- 221 (337)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCC-----------HHHHHHTHHH-HTCG-G-GHH---
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-----------chHHHHHHHH-cCCC-c-ccc---
Confidence 455899999999999999887789999999999999997432100 1111111111 1221 1 111
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC-CcceEEccCCCCCCcceecC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-NIKVEYLSRRPGDYAEVYSD 353 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d 353 (393)
.+ ....|+|++|+|++++.+++.+... +.|+++ +..+|+.|+++.+.+.++. +.+....+ .........+|
T Consensus 222 ---~~-~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d 293 (337)
T 2c29_D 222 ---II-RQGQFVHLDDLCNAHIYLFENPKAE--GRYICS-SHDCIILDLAKMLREKYPEYNIPTEFKG-VDENLKSVCFS 293 (337)
T ss_dssp ---HH-TEEEEEEHHHHHHHHHHHHHCTTCC--EEEEEC-CEEEEHHHHHHHHHHHCTTSCCCSCCTT-CCTTCCCCEEC
T ss_pred ---cc-CCCCEEEHHHHHHHHHHHhcCcccC--ceEEEe-CCCCCHHHHHHHHHHHCCCccCCCCCCc-ccCCCcccccc
Confidence 11 1234999999999999999865433 578765 4568999999999998742 22221111 12234567789
Q ss_pred HHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 354 PSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 354 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
++|+ ++|||+|++ +++|+|+++++|+++.
T Consensus 294 ~~k~-~~lG~~p~~-~l~e~l~~~~~~~~~~ 322 (337)
T 2c29_D 294 SKKL-TDLGFEFKY-SLEDMFTGAVDTCRAK 322 (337)
T ss_dssp CHHH-HHHTCCCCC-CHHHHHHHHHHHHHHT
T ss_pred HHHH-HHcCCCcCC-CHHHHHHHHHHHHHHc
Confidence 9999 789999999 8999999999999875
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=307.05 Aligned_cols=295 Identities=18% Similarity=0.205 Sum_probs=232.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-----CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-----YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|+|||||||||||++|+++|+++| ++|++++|...... . ...+++++.+|+.|.+++.++++..+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~-----~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H-----EDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C-----CSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c-----ccCceEEEEeecCCHHHHHHHHhcCC
Confidence 799999999999999999999999 99999998654322 0 12578999999999999999994322
Q ss_pred -CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEE-------EeecceeecCC--CCCCCCCCCC
Q 016208 125 -FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLI-------YSSTCATYGEP--DKMPITESTP 192 (393)
Q Consensus 125 -~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V-------~~SS~~vyg~~--~~~~~~E~~~ 192 (393)
+|+|||+|+... .++...+++|+.++.+++++|++. +++++| |+||.++||.. ...+++|+++
T Consensus 72 ~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 72 DVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp TCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred CCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 999999999752 457789999999999999999988 788998 89999999875 3457899988
Q ss_pred CCC-CChHHHHHHHHHHHHHHHHhhCC-CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHH-HHHHH--hCCCCce
Q 016208 193 QKP-INPYGKAKKMSEDIIIDFSKTTN-MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGA-CFDAA--RGIIPGL 267 (393)
Q Consensus 193 ~~p-~~~Y~~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 267 (393)
..| .++| ..+|+.++.++++.+ ++++++||+.||||+..... ..+.+. +...+ ..+.+ +
T Consensus 147 ~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-----------~~~~~~~~~~~~~~~~g~~-~ 210 (364)
T 2v6g_A 147 RLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMM-----------NLVGTLCVYAAICKHEGKV-L 210 (364)
T ss_dssp CCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSS-----------CHHHHHHHHHHHHHHHTCC-B
T ss_pred CCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCccc-----------chHHHHHHHHHHHHhcCCc-e
Confidence 766 6788 458999999887777 99999999999999754210 023333 34444 34555 5
Q ss_pred eEcCccccCCCCc---cccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceE--EccC
Q 016208 268 KIRGTDYNTADGT---CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE--YLSR 342 (393)
Q Consensus 268 ~~~g~~~~~~~g~---~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~--~~~~ 342 (393)
.+.| +++ ...+++|++|+|++++.+++.+.. .+++||+++++.+|+.|+++.+++.+|.+.... ..|.
T Consensus 211 ~~~g------~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~-~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~ 283 (364)
T 2v6g_A 211 RFTG------CKAAWDGYSDCSDADLIAEHHIWAAVDPYA-KNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDL 283 (364)
T ss_dssp CCCS------CHHHHHSCBCCEEHHHHHHHHHHHHHCGGG-TTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCC
T ss_pred ecCC------CcccccccCCCCcHHHHHHHHHHHHhCCCC-CCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 5555 563 447788889999999999986543 237999999999999999999999999875532 2221
Q ss_pred C----------------------CC---CC-----------cc-eecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 343 R----------------------PG---DY-----------AE-VYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 343 ~----------------------~~---~~-----------~~-~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+ .. .. .. ..+|++|+++ |||+|.+ +++|+|+++++||+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~-~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 284 KLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFR-NSKNAFISWIDKAKAY 360 (364)
T ss_dssp CHHHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCC-CHHHHHHHHHHHHHHT
T ss_pred cHHHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCC-CHHHHHHHHHHHHHHc
Confidence 1 11 11 23 5789999987 9999988 8999999999999875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=300.59 Aligned_cols=276 Identities=18% Similarity=0.165 Sum_probs=216.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||||||||||||++|+++|+++||+|++++|.+... . +..| +...+.+ .++|+||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~---------------~---~~~~----~~~~~~l--~~~d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG---------------R---ITWD----ELAASGL--PSCDAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------E---EEHH----HHHHHCC--CSCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC---------------e---eecc----hhhHhhc--cCCCEEE
Confidence 7899999999999999999999999999999853211 1 1122 2223445 7899999
Q ss_pred EcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHH
Q 016208 130 HFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 130 ~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
|+|+...... ........++.|+.+|.+|++++...+. .++|++||.++||.....+.+|++|..|.+.|+..|
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~~ 136 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLV 136 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHHH
Confidence 9998542221 2233456788999999999999998764 458999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
...|... +....+++++++||+.||||+. ..+..+......+.. ...| ++++.+
T Consensus 137 ~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~----------------~~~~~~~~~~~~~~~--~~~g------~g~~~~ 190 (298)
T 4b4o_A 137 TKWEAAA--RLPGDSTRQVVVRSGVVLGRGG----------------GAMGHMLLPFRLGLG--GPIG------SGHQFF 190 (298)
T ss_dssp HHHHHHH--CCSSSSSEEEEEEECEEECTTS----------------HHHHHHHHHHHTTCC--CCBT------TSCSBC
T ss_pred HHHHHHH--HhhccCCceeeeeeeeEEcCCC----------------CchhHHHHHHhcCCc--ceec------ccCcee
Confidence 8888754 3345789999999999999962 456666666666553 2234 899999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC-----CC------Ccceec
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP-----GD------YAEVYS 352 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-----~~------~~~~~~ 352 (393)
+|||++|+|+++..+++++... ++||+++++++|+.|+++.+++.+|++..+ ..|.+. +. ....++
T Consensus 191 ~~ihv~Dva~a~~~~~~~~~~~--g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~-pvP~~~~~~~~g~~~~~~~l~~~rv 267 (298)
T 4b4o_A 191 PWIHIGDLAGILTHALEANHVH--GVLNGVAPSSATNAEFAQTFGAALGRRAFI-PLPSAVVQAVFGRQRAIMLLEGQKV 267 (298)
T ss_dssp CEEEHHHHHHHHHHHHHCTTCC--EEEEESCSCCCBHHHHHHHHHHHHTCCCCC-CBCHHHHHHHHCHHHHHHHHCCCCB
T ss_pred ecCcHHHHHHHHHHHHhCCCCC--CeEEEECCCccCHHHHHHHHHHHhCcCCcc-cCCHHHHHHHhcchhHHHhhCCCEE
Confidence 9999999999999999987654 699999999999999999999999976532 222110 00 013356
Q ss_pred CHHHHHhhCCCceeccCHHHHHHHHHH
Q 016208 353 DPSKIRDELNWTARFTDLQGSLQIAWR 379 (393)
Q Consensus 353 d~~k~~~~lG~~p~~~~~~e~l~~~~~ 379 (393)
+++|++ ++||++++|+++++|+++++
T Consensus 268 ~~~kl~-~~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 268 IPRRTL-ATGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp CCHHHH-HTTCCCSCCSHHHHHHHHHH
T ss_pred cHHHHH-HCCCCCCCCCHHHHHHHHHH
Confidence 788886 58999999899999999988
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=303.31 Aligned_cols=303 Identities=21% Similarity=0.232 Sum_probs=213.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC-CCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+|+|||||||||||++|+++|+++|++|+++.| ....... ...+..+.....++.++.+|+.|++++.+++ .++|+
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~ 77 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD-VSFLTNLPGASEKLHFFNADLSNPDSFAAAI--EGCVG 77 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CC-CHHHHTSTTHHHHEEECCCCTTCGGGGHHHH--TTCSE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhH-HHHHHhhhccCCceEEEecCCCCHHHHHHHH--cCCCE
Confidence 378999999999999999999999999999887 3321111 1111111000125778899999999999999 78999
Q ss_pred EEEcccccCccCCccC-hHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceee-cCC-CCCCCCCCCCC--------CC
Q 016208 128 VMHFAAVAYVGESTLE-PLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATY-GEP-DKMPITESTPQ--------KP 195 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~-~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vy-g~~-~~~~~~E~~~~--------~p 195 (393)
|||+|+.... ...+ ....+++|+.++.+++++|.+. ++++|||+||.+++ +.. ...+++|+++. .|
T Consensus 78 vih~A~~~~~--~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p 155 (322)
T 2p4h_X 78 IFHTASPIDF--AVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKP 155 (322)
T ss_dssp EEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred EEEcCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCc
Confidence 9999975421 2223 2348899999999999999988 78999999998754 332 22356776532 23
Q ss_pred CC-hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 196 IN-PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 196 ~~-~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.. +|+.+|.++|.++++++...|++++++||++||||....... ..+..+..... +.+ .. .+
T Consensus 156 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~-----------~~~~~~~~~~~-g~~-~~-~~--- 218 (322)
T 2p4h_X 156 FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLP-----------DSIEKALVLVL-GKK-EQ-IG--- 218 (322)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCC-----------HHHHHHTHHHH-SCG-GG-CC---
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCC-----------chHHHHHHHHh-CCC-cc-Cc---
Confidence 33 699999999999999887789999999999999996432100 12222222222 221 11 11
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC-CcceEE-ccCCCCCCcceec
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-NIKVEY-LSRRPGDYAEVYS 352 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~-~~~~~~~~~~~~~ 352 (393)
. ..++|+|++|+|++++.+++.+.. . +.|| ++++.+|+.|+++.+.+.++. +++... .... .......+
T Consensus 219 ---~--~~~~~i~v~Dva~a~~~~~~~~~~-~-g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~ 289 (322)
T 2p4h_X 219 ---V--TRFHMVHVDDVARAHIYLLENSVP-G-GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEI-KGARLPDL 289 (322)
T ss_dssp ---E--EEEEEEEHHHHHHHHHHHHHSCCC-C-EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTC-CCEECCEE
T ss_pred ---C--CCcCEEEHHHHHHHHHHHhhCcCC-C-CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCC-CCCcceec
Confidence 2 234899999999999999986443 2 3698 567889999999999988752 222110 0001 11135678
Q ss_pred CHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 353 DPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 353 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++|+ +.|||+|++ +++|+|+++++|++++
T Consensus 290 d~~k~-~~lG~~p~~-~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 290 NTKKL-VDAGFDFKY-TIEDMFDDAIQCCKEK 319 (322)
T ss_dssp CCHHH-HHTTCCCCC-CHHHHHHHHHHHHHHH
T ss_pred ccHHH-HHhCCccCC-CHHHHHHHHHHHHHhc
Confidence 99999 569999999 8999999999999865
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=311.11 Aligned_cols=309 Identities=18% Similarity=0.218 Sum_probs=214.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|+|||||||||||++|+++|+++|++|+++.|....... ...+..+. ...+++++.+|+.|++++.+++ .++|+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~--~~~D~V 84 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKK-VSHLLELQ-ELGDLKIFRADLTDELSFEAPI--AGCDFV 84 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTT-THHHHHHG-GGSCEEEEECCTTTSSSSHHHH--TTCSEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhh-HHHHHhcC-CCCcEEEEecCCCChHHHHHHH--cCCCEE
Confidence 5799999999999999999999999999998885432211 11111111 1246889999999999999999 789999
Q ss_pred EEcccccCccCCccCh-HHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecce-eecCC---CCCCCCCCCCC--------C
Q 016208 129 MHFAAVAYVGESTLEP-LRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCA-TYGEP---DKMPITESTPQ--------K 194 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~-vyg~~---~~~~~~E~~~~--------~ 194 (393)
||+|+.... ...++ ...+++|+.++.+++++|.+.+ +++|||+||.+ +|+.. ...+++|+.+. .
T Consensus 85 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (338)
T 2rh8_A 85 FHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162 (338)
T ss_dssp EEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------
T ss_pred EEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccC
Confidence 999986532 12233 3478999999999999999985 89999999987 44321 11367787532 1
Q ss_pred C-CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 195 P-INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 195 p-~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
| .++|+.+|.++|.+++.+++..|++++++||++||||....... ..+..+.... .+.+ . ..+..
T Consensus 163 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-----------~~~~~~~~~~-~g~~-~-~~~~~ 228 (338)
T 2rh8_A 163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVP-----------SSIGLAMSLI-TGNE-F-LINGM 228 (338)
T ss_dssp CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCC-----------HHHHHHHHHH-HTCH-H-HHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-----------chHHHHHHHH-cCCc-c-ccccc
Confidence 2 23699999999999999887789999999999999997542100 1222222222 2221 1 01000
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC-CcceEEccCCCCCCcceec
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-NIKVEYLSRRPGDYAEVYS 352 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~ 352 (393)
.....+...++|+|++|+|++++.+++.+... +.|++++ ..+|+.|+++.+.+.++. +.+....+ .... ....+
T Consensus 229 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~ 303 (338)
T 2rh8_A 229 KGMQMLSGSVSIAHVEDVCRAHIFVAEKESAS--GRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGD-FPPK-SKLII 303 (338)
T ss_dssp HHHHHHHSSEEEEEHHHHHHHHHHHHHCTTCC--EEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTT-SCSS-CSCCC
T ss_pred cccccccCcccEEEHHHHHHHHHHHHcCCCcC--CcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCC-CCcC-cceee
Confidence 00000012248999999999999999865443 5898865 469999999999998762 32221111 1111 23678
Q ss_pred CHHHHHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 353 DPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 353 d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++|+ ++|||+|++ +++|+|+++++|++++
T Consensus 304 d~~k~-~~lG~~p~~-~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 304 SSEKL-VKEGFSFKY-GIEEIYDESVEYFKAK 333 (338)
T ss_dssp CCHHH-HHHTCCCSC-CHHHHHHHHHHHHHHT
T ss_pred chHHH-HHhCCCCCC-CHHHHHHHHHHHHHHc
Confidence 99999 569999999 8999999999999876
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=289.23 Aligned_cols=267 Identities=20% Similarity=0.177 Sum_probs=220.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++++++|+ +|++|++++|..... .+ +.+|+.+++++.++++..++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ--------------GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT--------------TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC--------------CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999 589999999865210 12 789999999999999544699999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+||......+..++...+++|+.++.+++++|.+.++ ++|++||.++|+.... +++|+++..|.+.|+.+|..+|.+
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~-~~~e~~~~~~~~~Y~~sK~~~e~~ 140 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG-NYKEEDIPNPINYYGLSKLLGETF 140 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC-SBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC-CcCCCCCCCCCCHHHHHHHHHHHH
Confidence 99997654333457788999999999999999999887 9999999999987654 889999999999999999999998
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++. ++++++||+.+||+. .+...+......+.+ +.+.+ + .++++|++
T Consensus 141 ~~~------~~~~~iR~~~v~G~~-----------------~~~~~~~~~~~~~~~-~~~~~------~---~~~~~~~~ 187 (273)
T 2ggs_A 141 ALQ------DDSLIIRTSGIFRNK-----------------GFPIYVYKTLKEGKT-VFAFK------G---YYSPISAR 187 (273)
T ss_dssp HCC------TTCEEEEECCCBSSS-----------------SHHHHHHHHHHTTCC-EEEES------C---EECCCBHH
T ss_pred HhC------CCeEEEecccccccc-----------------HHHHHHHHHHHcCCC-EEeec------C---CCCceEHH
Confidence 865 578999999999832 566666666767666 66554 2 78999999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc----CCCCCCcceecCHHHHHhhCCCce
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS----RRPGDYAEVYSDPSKIRDELNWTA 365 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~d~~k~~~~lG~~p 365 (393)
|+|++++.+++.+. .++||+++ +.+|+.|+++.+.+.+|.+.+..... ..........+|++|+++.|||+|
T Consensus 188 dva~~i~~~~~~~~---~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 263 (273)
T 2ggs_A 188 KLASAILELLELRK---TGIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDF 263 (273)
T ss_dssp HHHHHHHHHHHHTC---CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCC
T ss_pred HHHHHHHHHHhcCc---CCeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCC
Confidence 99999999998754 25999998 99999999999999999887654321 112234567899999999999999
Q ss_pred -eccCHHHHH
Q 016208 366 -RFTDLQGSL 374 (393)
Q Consensus 366 -~~~~~~e~l 374 (393)
.+ ++++++
T Consensus 264 ~~~-~l~~~~ 272 (273)
T 2ggs_A 264 YTL-DLDGMV 272 (273)
T ss_dssp CSC-CGGGCC
T ss_pred CCc-cccccc
Confidence 46 888875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=310.00 Aligned_cols=282 Identities=16% Similarity=0.147 Sum_probs=212.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|||||||||||++|++.|+++|++|++++|..... ..+.+|+.+. +.+++ .++|+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~-----------------~~v~~d~~~~--~~~~l--~~~D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP-----------------GKRFWDPLNP--ASDLL--DGADVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT-----------------TCEECCTTSC--CTTTT--TTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc-----------------cceeecccch--hHHhc--CCCCEE
Confidence 68999999999999999999999999999999865432 1255676542 34556 689999
Q ss_pred EEcccccCcc-CCccChHHHHHHHHHHHHHHHHH-HHhcCCcEEEEeecceeec-CCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 129 MHFAAVAYVG-ESTLEPLRYYHNITSNTLVILEA-MAAHKVKTLIYSSTCATYG-EPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 129 i~~A~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~-~~~~~~~~~V~~SS~~vyg-~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
||+|+..... .........+++|+.++.+|+++ ++..++++|||+||.++|| .....+++|+.+. |.+.|+.+|..
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~-~~~~y~~~~~~ 284 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES-GDDFLAEVCRD 284 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC-CSSHHHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC-CcChHHHHHHH
Confidence 9999976432 23456677899999999999999 6667889999999999998 4555578888887 88999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
.|..+.. +...|++++++||++||||+. .++..+...+..+.. . ..| ++++.++|
T Consensus 285 ~E~~~~~-~~~~gi~~~ilRp~~v~Gp~~----------------~~~~~~~~~~~~g~~-~-~~g------~g~~~~~~ 339 (516)
T 3oh8_A 285 WEHATAP-ASDAGKRVAFIRTGVALSGRG----------------GMLPLLKTLFSTGLG-G-KFG------DGTSWFSW 339 (516)
T ss_dssp HHHTTHH-HHHTTCEEEEEEECEEEBTTB----------------SHHHHHHHTTC---C-C-CCT------TSCCEECE
T ss_pred HHHHHHH-HHhCCCCEEEEEeeEEECCCC----------------ChHHHHHHHHHhCCC-c-ccC------CCCceEce
Confidence 9987655 445799999999999999862 456666655554443 1 223 78999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC-----CCCC-------cceecC
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR-----PGDY-------AEVYSD 353 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-----~~~~-------~~~~~d 353 (393)
+|++|+|++++.+++.+... ++||+++++.+|+.|+++.+.+.+|.+... ..|.+ .+.. ....++
T Consensus 340 i~v~Dva~ai~~~l~~~~~~--g~~ni~~~~~~s~~el~~~i~~~~g~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~ 416 (516)
T 3oh8_A 340 IAIDDLTDIYYRAIVDAQIS--GPINAVAPNPVSNADMTKILATSMHRPAFI-QIPSLGPKILLGSQGAEELALASQRTA 416 (516)
T ss_dssp EEHHHHHHHHHHHHHCTTCC--EEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEEC
T ss_pred EeHHHHHHHHHHHHhCcccC--CcEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhCCchhHHHhhcCCeec
Confidence 99999999999999976543 699999999999999999999999977532 22221 1111 244578
Q ss_pred HHHHHhhCCCceeccCHHHHHHHHHHHH
Q 016208 354 PSKIRDELNWTARFTDLQGSLQIAWRWQ 381 (393)
Q Consensus 354 ~~k~~~~lG~~p~~~~~~e~l~~~~~~~ 381 (393)
++|++ .|||+|++++++++|++++++.
T Consensus 417 ~~kl~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 417 PAALE-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp CHHHH-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred hHHHH-HCCCCCCCCCHHHHHHHHhCcc
Confidence 89997 6999999966999999988753
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=298.98 Aligned_cols=311 Identities=15% Similarity=0.112 Sum_probs=226.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCch---hhhhhhhhc------CCCCccEEEEccCCCHHHH
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG---AVKVLQELF------PQPGQLQFIYADLGDAKAV 116 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~------~~~~~~~~~~~Dl~~~~~~ 116 (393)
...||+|||||||||||++|+++|++.|++|++++|....... ..+.+.... ....++.++.+|+.+++++
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 145 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 145 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence 3567899999999999999999999999999999996552211 111111110 0125899999999998887
Q ss_pred HHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC-----CCCCCCCCCC
Q 016208 117 NKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE-----PDKMPITEST 191 (393)
Q Consensus 117 ~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~-----~~~~~~~E~~ 191 (393)
. .+ .++|+|||+|+.... ..+....+++|+.++.+++++|.+ ++++|||+||.++ |. ....+++|++
T Consensus 146 ~-~~--~~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~ 217 (427)
T 4f6c_A 146 V-LP--ENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEAD 217 (427)
T ss_dssp C-CS--SCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTC
T ss_pred C-Cc--CCCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccc
Confidence 7 44 799999999998643 346677899999999999999999 7789999999998 43 2345788888
Q ss_pred C---CCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 P---QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~---~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+ ..|.+.|+.+|+.+|.+++.+++ .|++++++||++|||+...+.+.... ...++..++.......+ ++
T Consensus 218 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~ 289 (427)
T 4f6c_A 218 VYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNI------KTNRFSMVMNDLLQLDC-IG 289 (427)
T ss_dssp SCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTG------GGCHHHHHHHHHHHSSE-EE
T ss_pred cccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCc------chHHHHHHHHHHHhcCC-CC
Confidence 7 55889999999999999999865 79999999999999998654322110 01345556666655544 43
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC----
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP---- 344 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---- 344 (393)
. + .++..++|+|++|+|++++.++..+. .+++||+++++++++.|+++.+.+ +| .+....+.+.
T Consensus 290 ~-~------~~~~~~~~v~v~DvA~ai~~~~~~~~--~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~ 357 (427)
T 4f6c_A 290 V-S------MAEMPVDFSFVDTTARQIVALAQVNT--PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQ 357 (427)
T ss_dssp H-H------HHTCEECCEEHHHHHHHHHHHTTSCC--CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHH
T ss_pred C-c------cccceEEEeeHHHHHHHHHHHHcCCC--CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHH
Confidence 3 2 36788999999999999999998765 347999999999999999999998 66 3322211110
Q ss_pred --------------CCCcceecCHHHHH---hhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 345 --------------GDYAEVYSDPSKIR---DELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 345 --------------~~~~~~~~d~~k~~---~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.......+|+++.. +.+||.+.. .-++.++++++|+++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~-~~~~~l~~~~~~l~~~~ 414 (427)
T 4f6c_A 358 KQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPT-ITNNWLYHWAQYIKTIF 414 (427)
T ss_dssp HTTCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCC-CCHHHHHHHHHHHHHHH
T ss_pred hcCchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 01124566776665 557998775 34668999999988763
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=290.02 Aligned_cols=275 Identities=19% Similarity=0.221 Sum_probs=208.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHC---CCeEEEEeCCCCCCchhhhhhhhhcCC-------------CCccEEEEcc
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKD---SYRVTIVDNLSRGNMGAVKVLQELFPQ-------------PGQLQFIYAD 109 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D 109 (393)
...||+|||||||||||++|+++|+++ |++|++++|...... ..+.+.+.... ..++.++.+|
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 356799999999999999999999999 999999999654332 22222222111 2589999999
Q ss_pred CC------CHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC
Q 016208 110 LG------DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD 183 (393)
Q Consensus 110 l~------~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~ 183 (393)
+. +.+.+.+++ .++|+|||+|+.... .+....+++|+.++.+++++|.+.++++|||+||.++|+...
T Consensus 149 l~~~~~gld~~~~~~~~--~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~ 222 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLA--ETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIE 222 (478)
T ss_dssp TTSGGGGCCHHHHHHHH--HHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSC
T ss_pred CCCcccCCCHHHHHHHH--cCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccC
Confidence 98 778899998 589999999998754 445567899999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCh-----------HHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCC-CCCCCCCCCccccccc
Q 016208 184 KMPITESTPQKPINP-----------YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPE-GRLGEAPHPELREHGR 251 (393)
Q Consensus 184 ~~~~~E~~~~~p~~~-----------Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~ 251 (393)
..+++|+.+..|.++ |+.+|+.+|.+++.++++.|++++++||++|||++.. +.+.. ..
T Consensus 223 ~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~---------~~ 293 (478)
T 4dqv_A 223 PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNM---------SD 293 (478)
T ss_dssp TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCT---------TB
T ss_pred CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCH---------HH
Confidence 778999887665544 9999999999999998878999999999999998642 11110 14
Q ss_pred chHHHHHHHhCCCCceeE--cCccccCCCCccccccccHHHHHHHHHHHHhcC---CCCCcceEEecCCCc--ccHHHHH
Q 016208 252 ISGACFDAARGIIPGLKI--RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA---KPGKVGIYNVGTGKG--RSVKEFV 324 (393)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~--~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~---~~~~~~~yni~~~~~--~s~~el~ 324 (393)
++..++........ ++. .+....-+.++..++++|++|+|++++.++... ....+++||+++++. +|+.|++
T Consensus 294 ~~~~l~~~~~~~g~-~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~ 372 (478)
T 4dqv_A 294 WVTRMVLSLMATGI-APRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYV 372 (478)
T ss_dssp HHHHHHHHHHHHCE-EESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHH
T ss_pred HHHHHHHHHHHcCc-ccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHH
Confidence 55555444333211 111 110000011267889999999999999998751 223457999999987 9999999
Q ss_pred HHHHHHhCCCcceE
Q 016208 325 EACKKATGVNIKVE 338 (393)
Q Consensus 325 ~~i~~~~g~~~~~~ 338 (393)
+.+.+. |.+.+..
T Consensus 373 ~~l~~~-g~~~~~i 385 (478)
T 4dqv_A 373 DWLIEA-GYPIRRI 385 (478)
T ss_dssp HHHHHT-TCSCEEE
T ss_pred HHHHHc-CCCcccC
Confidence 999985 7776543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=268.89 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=203.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|+|||||||||||++|+++|+++ |++|++++|...... .+.. .+++++.+|+.|++++.+++ .++|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~l~~-----~~~~~~~~D~~d~~~l~~~~--~~~d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS----TLAD-----QGVEVRHGDYNQPESLQKAF--AGVSK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH----HHHH-----TTCEEEECCTTCHHHHHHHT--TTCSE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh----HHhh-----cCCeEEEeccCCHHHHHHHH--hcCCE
Confidence 57999999999999999999999 999999998643322 1111 47889999999999999999 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|||+|+.. . .. +.|+.++.+++++|++.+++++||+||.++|.. ..+|+.+|..+|
T Consensus 70 vi~~a~~~-~-----~~----~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~--------------~~~y~~~K~~~E 125 (287)
T 2jl1_A 70 LLFISGPH-Y-----DN----TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES--------------IIPLAHVHLATE 125 (287)
T ss_dssp EEECCCCC-S-----CH----HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC--------------CSTHHHHHHHHH
T ss_pred EEEcCCCC-c-----Cc----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC--------------CCchHHHHHHHH
Confidence 99999852 1 11 579999999999999999999999999887621 138999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
++++. .+++++++||+.++|+... .++. ..+..+. .. .+ .++..++++|
T Consensus 126 ~~~~~----~~~~~~ilrp~~~~~~~~~---------------~~~~---~~~~~~~--~~-~~------~~~~~~~~i~ 174 (287)
T 2jl1_A 126 YAIRT----TNIPYTFLRNALYTDFFVN---------------EGLR---ASTESGA--IV-TN------AGSGIVNSVT 174 (287)
T ss_dssp HHHHH----TTCCEEEEEECCBHHHHSS---------------GGGH---HHHHHTE--EE-ES------CTTCCBCCBC
T ss_pred HHHHH----cCCCeEEEECCEeccccch---------------hhHH---HHhhCCc--ee-cc------CCCCccCccC
Confidence 99865 7999999999998875311 2222 2222222 22 22 4677899999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC--------CCC------------
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP--------GDY------------ 347 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--------~~~------------ 347 (393)
++|+|++++.+++.+.. .+++||+++++.+|+.|+++.+.+.+|.+.+....+... ...
T Consensus 175 ~~Dva~~~~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (287)
T 2jl1_A 175 RNELALAAATVLTEEGH-ENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYD 253 (287)
T ss_dssp HHHHHHHHHHHHTSSSC-TTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-CCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999987543 347999999999999999999999999987766554310 111
Q ss_pred ----cceecCHHHHHhhCCCceeccCHHHHHHHHHH
Q 016208 348 ----AEVYSDPSKIRDELNWTARFTDLQGSLQIAWR 379 (393)
Q Consensus 348 ----~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~ 379 (393)
.....|++|+++.|| |.+ +++|+|+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~lG--~~~-~l~e~l~~~~~ 286 (287)
T 2jl1_A 254 AISKGEASKTSDDLQKLIG--SLT-PLKETVKQALK 286 (287)
T ss_dssp HHHTTTTCCCCSHHHHHHS--SCC-CHHHHHHHHHT
T ss_pred HHhCCCCcCCchHHHHHhC--CCC-CHHHHHHHHhc
Confidence 134567899999999 666 89999999875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=298.61 Aligned_cols=309 Identities=16% Similarity=0.109 Sum_probs=226.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhh---hhhhhc------CCCCccEEEEccCCCHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVK---VLQELF------PQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~~~~~------~~~~~~~~~~~Dl~~~~~~~ 117 (393)
..||+|||||||||||++|+++|++.|++|++++|.........+ .+.... ....++.++.+|+.+++.+.
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 457899999999999999999999999999999986542211111 111110 01368999999999987777
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC-----CCCCCCCCCCC
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE-----PDKMPITESTP 192 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~-----~~~~~~~E~~~ 192 (393)
+. .++|+|||+|+.... ..+....+++|+.++.+++++|.+ +.+++||+||.++ |. ....+++|+++
T Consensus 228 -~~--~~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~ 299 (508)
T 4f6l_B 228 -LP--ENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADV 299 (508)
T ss_dssp -CS--SCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCS
T ss_pred -Cc--cCCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCcccccccc
Confidence 44 799999999997643 345667888999999999999998 6789999999999 43 23457888877
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 ---QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ---~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..|.+.|+.+|+.+|++++.+++ .|++++++||+.|||+...+.+..... ..++..++........ ++.
T Consensus 300 ~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~------~~~~~~~i~~~~~~~~-~~~ 371 (508)
T 4f6l_B 300 YKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIK------TNRFSMVMNDLLQLDC-IGV 371 (508)
T ss_dssp CSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCT------TCHHHHHHHHHTTCSE-EET
T ss_pred cccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcc------hHHHHHHHHHHHHcCC-CCC
Confidence 45789999999999999999865 799999999999999986543322110 1345566666665543 332
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC-----
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP----- 344 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----- 344 (393)
+ .++..++|+|++|+|++++.++..+. .+++||+++++.+++.|+++.+.+.. .+....+.+.
T Consensus 372 -~------~g~~~~~~v~v~DvA~ai~~~~~~~~--~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~~ 439 (508)
T 4f6l_B 372 -S------MAEMPVDFSFVDTTARQIVALAQVNT--PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQK 439 (508)
T ss_dssp -T------GGGSEEECEEHHHHHHHHHHHTTBCC--SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHHT
T ss_pred -C------ccCceEEEEcHHHHHHHHHHHHhCCC--CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHHh
Confidence 2 46889999999999999999998765 34799999999999999999999754 2222211110
Q ss_pred -------------CCCcceecCHHHHH---hhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 345 -------------GDYAEVYSDPSKIR---DELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 345 -------------~~~~~~~~d~~k~~---~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
.......+|+++.. +.+||.+.. .-++.++++++|+++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~-~~~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 440 QDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPT-ITNNWLYHWAQYIKTI 494 (508)
T ss_dssp TCCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHHHH
T ss_pred cCCccchhcccccccCcceecchHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 01124556766654 457998876 4588899999998876
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=261.70 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=177.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.||+|||||||||||++|+++|+++|++|++++|........ ..+++++.+|+.|.+++.+++ .++|+
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~--~~~d~ 70 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----------NEHLKVKKADVSSLDEVCEVC--KGADA 70 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----------CTTEEEECCCTTCHHHHHHHH--TTCSE
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----------cCceEEEEecCCCHHHHHHHh--cCCCE
Confidence 368999999999999999999999999999999864332211 258899999999999999999 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|||+|+.... ....+++|+.++.+++++|++.+++++||+||.++|+...+ ...|+.+..|.++|+.+|..+|
T Consensus 71 vi~~a~~~~~------~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~-~~~~~~~~~p~~~Y~~sK~~~e 143 (227)
T 3dhn_A 71 VISAFNPGWN------NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPG-LRLMDSGEVPENILPGVKALGE 143 (227)
T ss_dssp EEECCCC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETT-EEGGGTTCSCGGGHHHHHHHHH
T ss_pred EEEeCcCCCC------ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCC-CccccCCcchHHHHHHHHHHHH
Confidence 9999986421 12367789999999999999999999999999987765443 3456777889999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
.+++.++++.+++++++||+.+|||+.... .+. .. .. .++. .++. ++++|
T Consensus 144 ~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-------------~~~-------~~-~~-~~~~-------~~~~-~~~i~ 193 (227)
T 3dhn_A 144 FYLNFLMKEKEIDWVFFSPAADMRPGVRTG-------------RYR-------LG-KD-DMIV-------DIVG-NSHIS 193 (227)
T ss_dssp HHHHTGGGCCSSEEEEEECCSEEESCCCCC-------------CCE-------EE-SS-BCCC-------CTTS-CCEEE
T ss_pred HHHHHHhhccCccEEEEeCCcccCCCcccc-------------cee-------ec-CC-Cccc-------CCCC-CcEEe
Confidence 999999877899999999999999974321 110 01 11 1111 2222 89999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHH
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKE 322 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~e 322 (393)
++|+|++++.+++++... +++|+++++++.++.+
T Consensus 194 ~~Dva~ai~~~l~~~~~~-g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 194 VEDYAAAMIDELEHPKHH-QERFTIGYLEHHHHHH 227 (227)
T ss_dssp HHHHHHHHHHHHHSCCCC-SEEEEEECCSCCC---
T ss_pred HHHHHHHHHHHHhCcccc-CcEEEEEeehhcccCC
Confidence 999999999999987654 4899999999888753
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=264.45 Aligned_cols=236 Identities=19% Similarity=0.253 Sum_probs=196.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||+|||||||||||++|+++|+++|++|++++|...... ..++.++.+|+.+++++.+++ .++|+|
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~--~~~d~v 67 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLV--KDCDGI 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHH--TTCSEE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHH--cCCCEE
Confidence 579999999999999999999999999999988643211 136788999999999999999 689999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC-CCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP-DKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
||+|+... .......+++|+.++.+++++|.+.+++++||+||..+|+.. ...+++|+++..|.++|+.+|..+|
T Consensus 68 i~~a~~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e 143 (267)
T 3ay3_A 68 IHLGGVSV----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGE 143 (267)
T ss_dssp EECCSCCS----CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHHHH
T ss_pred EECCcCCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Confidence 99999752 345678899999999999999999999999999999999864 3468999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
.+++.++...+++++++||+.+|+.. . ++...++++|
T Consensus 144 ~~~~~~~~~~gi~~~~lrp~~v~~~~-----------------~--------------------------~~~~~~~~~~ 180 (267)
T 3ay3_A 144 DLASLYYHKFDIETLNIRIGSCFPKP-----------------K--------------------------DARMMATWLS 180 (267)
T ss_dssp HHHHHHHHTTCCCEEEEEECBCSSSC-----------------C--------------------------SHHHHHHBCC
T ss_pred HHHHHHHHHcCCCEEEEeceeecCCC-----------------C--------------------------CCCeeecccc
Confidence 99999888789999999999999421 0 1234567999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceec
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARF 367 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 367 (393)
++|+|++++.+++.+... .++|++.++.. ..+.|..++ +.|||+|++
T Consensus 181 ~~dva~~~~~~~~~~~~~-~~~~~~~~~~~-------------------------------~~~~d~~~~-~~lg~~p~~ 227 (267)
T 3ay3_A 181 VDDFMRLMKRAFVAPKLG-CTVVYGASANT-------------------------------ESWWDNDKS-AFLGWVPQD 227 (267)
T ss_dssp HHHHHHHHHHHHHSSCCC-EEEEEECCSCS-------------------------------SCCBCCGGG-GGGCCCCCC
T ss_pred HHHHHHHHHHHHhCCCCC-ceeEecCCCcc-------------------------------ccccCHHHH-HHcCCCCCC
Confidence 999999999999876543 35787764321 133566777 789999998
Q ss_pred cCHHHHHHHHHH
Q 016208 368 TDLQGSLQIAWR 379 (393)
Q Consensus 368 ~~~~e~l~~~~~ 379 (393)
+++++++++.+
T Consensus 228 -~~~~~~~~~~~ 238 (267)
T 3ay3_A 228 -SSEIWREEIEQ 238 (267)
T ss_dssp -CGGGGHHHHHH
T ss_pred -CHHHHHHHHHh
Confidence 89999998765
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=271.73 Aligned_cols=268 Identities=19% Similarity=0.253 Sum_probs=208.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+.+|+||||||||+||++|+++|+++ |+ +|++++|......... ..+. ..++.++.+|++|.+++.+++ .+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~---~~~~--~~~v~~~~~Dl~d~~~l~~~~--~~ 91 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA---MEFN--DPRMRFFIGDVRDLERLNYAL--EG 91 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH---HHHC--CTTEEEEECCTTCHHHHHHHT--TT
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH---HHhc--CCCEEEEECCCCCHHHHHHHH--hc
Confidence 55689999999999999999999999 97 9999988532211111 1221 257899999999999999999 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
+|+|||+||......+..++...+++|+.++.+++++|.+.+++++|++||..++ .|.++|+.+|+
T Consensus 92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~--------------~p~~~Y~~sK~ 157 (344)
T 2gn4_A 92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA--------------NPINLYGATKL 157 (344)
T ss_dssp CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS--------------SCCSHHHHHHH
T ss_pred CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC--------------CCccHHHHHHH
Confidence 9999999998754444567788999999999999999999999999999996543 35689999999
Q ss_pred HHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC-CceeEcCccccCCCCc
Q 016208 205 MSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII-PGLKIRGTDYNTADGT 280 (393)
Q Consensus 205 ~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~g~ 280 (393)
++|.+++.++.. .|++++++||++|||++. .+++.+...+..+. + +++. ++.
T Consensus 158 ~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~----------------~~i~~~~~~~~~g~~~-~~i~-------~~~ 213 (344)
T 2gn4_A 158 CSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG----------------SVVPFFKKLVQNKASE-IPIT-------DIR 213 (344)
T ss_dssp HHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT----------------SHHHHHHHHHHHTCCC-EEES-------CTT
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC----------------CHHHHHHHHHHcCCCc-eEEe-------CCC
Confidence 999999998764 589999999999999852 56777777777776 5 6664 477
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCC-CcceecCHHHHHh
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGD-YAEVYSDPSKIRD 359 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~d~~k~~~ 359 (393)
..++|+|++|+|++++.+++.+.. +++|+++++ .+++.|+++.+.+.++ +......+.+ .....++..+.++
T Consensus 214 ~~r~~i~v~D~a~~v~~~l~~~~~--g~~~~~~~~-~~s~~el~~~i~~~~~----~~~~~~~~~e~~~e~~~~~~~~~~ 286 (344)
T 2gn4_A 214 MTRFWITLDEGVSFVLKSLKRMHG--GEIFVPKIP-SMKMTDLAKALAPNTP----TKIIGIRPGEKLHEVMIPKDESHL 286 (344)
T ss_dssp CEEEEECHHHHHHHHHHHHHHCCS--SCEEEECCC-EEEHHHHHHHHCTTCC----EEECCCCTTCCSSCEEECGGGGGG
T ss_pred eEEeeEEHHHHHHHHHHHHhhccC--CCEEecCCC-cEEHHHHHHHHHHhCC----eeEcCCCCCccHhhhccCHhHHHh
Confidence 889999999999999999987643 369998765 6999999999986432 2222222222 2233345555555
Q ss_pred hCCCcee
Q 016208 360 ELNWTAR 366 (393)
Q Consensus 360 ~lG~~p~ 366 (393)
.++|...
T Consensus 287 ~~~~~~~ 293 (344)
T 2gn4_A 287 ALEFEDF 293 (344)
T ss_dssp EEECSSE
T ss_pred hccCCCE
Confidence 5665543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=263.35 Aligned_cols=260 Identities=14% Similarity=0.163 Sum_probs=197.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|||||||||||++|+++|+++ |++|++++|....... +.. .++.++.+|+.|++++.+++ .++|+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~----~~~-----~~~~~~~~D~~d~~~~~~~~--~~~d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA----LAA-----QGITVRQADYGDEAALTSAL--QGVEKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH----HHH-----TTCEEEECCTTCHHHHHHHT--TTCSEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh----hhc-----CCCeEEEcCCCCHHHHHHHH--hCCCEE
Confidence 5899999999999999999998 9999999986443221 111 47889999999999999999 789999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+... ..|+.++.+++++|++.+++++|++||.++|. ...+|+.+|..+|+
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~--------------~~~~y~~sK~~~e~ 123 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT--------------SPLGLADEHIETEK 123 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT--------------CCSTTHHHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC--------------CcchhHHHHHHHHH
Confidence 99998521 14788999999999999999999999987761 12489999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
+++. .+++++++||+.++++. ...+......+ . +. .+ .++..++++|+
T Consensus 124 ~~~~----~~~~~~ilrp~~~~~~~-------------------~~~~~~~~~~~-~-~~-~~------~~~~~~~~i~~ 171 (286)
T 2zcu_A 124 MLAD----SGIVYTLLRNGWYSENY-------------------LASAPAALEHG-V-FI-GA------AGDGKIASATR 171 (286)
T ss_dssp HHHH----HCSEEEEEEECCBHHHH-------------------HTTHHHHHHHT-E-EE-ES------CTTCCBCCBCH
T ss_pred HHHH----cCCCeEEEeChHHhhhh-------------------HHHhHHhhcCC-c-ee-cc------CCCCccccccH
Confidence 9876 68999999998766532 11222222222 2 32 23 56788999999
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCC--------CCC-------------
Q 016208 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP--------GDY------------- 347 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--------~~~------------- 347 (393)
+|+|++++.+++.+.. .+++||+++++.+|+.|+++.+.+.+|.+.++...+... ...
T Consensus 172 ~Dva~~~~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (286)
T 2zcu_A 172 ADYAAAAARVISEAGH-EGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVG 250 (286)
T ss_dssp HHHHHHHHHHHHSSSC-TTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-CCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999987543 347999999889999999999999999987766554320 111
Q ss_pred ---cceecCHHHHHhhCCCceeccCHHHHHHHHHHHHH
Q 016208 348 ---AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 348 ---~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~ 382 (393)
.....|++|+++.||| |.+ +++|+|+++++||+
T Consensus 251 ~~~~~~~~~~~~~~~~lg~-~~~-~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 251 ASKGGLFDDSKTLSKLIGH-PTT-TLAESVSHLFNVNN 286 (286)
T ss_dssp HHTTTTCCCCCHHHHHHTS-CCC-CHHHHHHGGGC---
T ss_pred HhCCCCccCchHHHHHhCc-CCC-CHHHHHHHHHhhcC
Confidence 1245678899999997 445 89999999998874
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=277.10 Aligned_cols=251 Identities=16% Similarity=0.174 Sum_probs=203.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|+|||||||||||++|+++|+++|+ +|++++|. .+.+++.+++ .++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~--~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESAL--LKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHH--HHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHh--ccCCEE
Confidence 6899999999999999999999999 88886542 5788899999 579999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
||+|+.... .++...++.|+.++.+++++|++.+++ ++||+||..+|+ .++|+.+|..+|
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~---------------~~~Y~~sK~~~E 111 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ---------------DNPYGESKLQGE 111 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS---------------CSHHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC---------------CCCchHHHHHHH
Confidence 999997643 345567788999999999999999987 999999999986 579999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
++++.++++.+++++++||+++||++..+.+ +.++..++..+..+.+ +.+. +++..++++|
T Consensus 112 ~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~i~ 172 (369)
T 3st7_A 112 QLLREYAEEYGNTVYIYRWPNLFGKWCKPNY-----------NSVIATFCYKIARNEE-IQVN-------DRNVELTLNY 172 (369)
T ss_dssp HHHHHHHHHHCCCEEEEEECEEECTTCCTTS-----------SCHHHHHHHHHHTTCC-CCCS-------CTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEECCceeCCCCCCCc-----------chHHHHHHHHHHcCCC-eEec-------CCCeEEEEEE
Confidence 9999999888999999999999999765322 1678888888888876 5442 5888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceec
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARF 367 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 367 (393)
++|+|++++.+++.+....+++||+++++.+|+.|+++.+.+.+|.+.+....+. + ...........+||.|..
T Consensus 173 v~Dva~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~-~-----~~~~~~l~~~~l~~~p~~ 246 (369)
T 3st7_A 173 VDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKL-D-----NLFEKDLYSTYLSYLPST 246 (369)
T ss_dssp HHHHHHHHHHHHHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCT-T-----SHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhCCcccCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCC-C-----CHHHHHHHHHHhcccCCc
Confidence 9999999999999766522479999999999999999999999987655332111 1 011123334457888877
Q ss_pred cCHHHHHH
Q 016208 368 TDLQGSLQ 375 (393)
Q Consensus 368 ~~~~e~l~ 375 (393)
+++++++
T Consensus 247 -~~~~~l~ 253 (369)
T 3st7_A 247 -DFSYPLL 253 (369)
T ss_dssp -CSCCCCC
T ss_pred -ceeechh
Confidence 6665544
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=268.69 Aligned_cols=286 Identities=13% Similarity=0.138 Sum_probs=206.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|.+|+|||||||||||++|++.|++.|++|++++|.........+.+..+. ..+++++.+|+.|.+++.+++++.++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE--DKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH--hCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 446799999999999999999999999999999996533333333232221 258999999999999999999555999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
+|||+|+.. |+.++.+++++|++.+ +++||+ | +||. ..+|..+..|.++|+.+|..
T Consensus 86 ~Vi~~a~~~---------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~~~~~p~~~y~~sK~~ 142 (346)
T 3i6i_A 86 IVVSTVGGE---------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRADPVEPGLNMYREKRR 142 (346)
T ss_dssp EEEECCCGG---------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTCCCCTTHHHHHHHHHH
T ss_pred EEEECCchh---------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCccCcCCCcchHHHHHHH
Confidence 999999862 7888999999999999 999986 4 4543 45677777888999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|+++++ .|++++++||+.++|..... +..... ....... +.+.| +++..++|
T Consensus 143 ~e~~l~~----~g~~~tivrpg~~~g~~~~~---------------~~~~~~-~~~~~~~-~~~~g------~g~~~~~~ 195 (346)
T 3i6i_A 143 VRQLVEE----SGIPFTYICCNSIASWPYYN---------------NIHPSE-VLPPTDF-FQIYG------DGNVKAYF 195 (346)
T ss_dssp HHHHHHH----TTCCBEEEECCEESSCCCSC---------------C------CCCCSSC-EEEET------TSCCCEEE
T ss_pred HHHHHHH----cCCCEEEEEecccccccCcc---------------cccccc-ccCCCce-EEEcc------CCCceEEe
Confidence 9999887 78999999999999964221 111110 1112233 66766 88999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEccCC--------CCCC---------
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLSRR--------PGDY--------- 347 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~~~--------~~~~--------- 347 (393)
+|++|+|++++.++..+... +++|++++ ++.+|+.|+++.+.+.+|.+.++...+.. ....
T Consensus 196 i~~~Dva~~~~~~l~~~~~~-~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 274 (346)
T 3i6i_A 196 VAGTDIGKFTMKTVDDVRTL-NKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTH 274 (346)
T ss_dssp ECHHHHHHHHHHHTTCGGGT-TEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCcccc-CeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHH
Confidence 99999999999999876432 36899874 58999999999999999998877654421 0000
Q ss_pred --------cceec---CHHHHHhh-CCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 348 --------AEVYS---DPSKIRDE-LNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 348 --------~~~~~---d~~k~~~~-lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
..+.. +..++.+. -++++. +++|.+++++.|++++...
T Consensus 275 ~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~t--~~~e~l~~~~~~~~~~~~~ 324 (346)
T 3i6i_A 275 DIFIKGCQVNFSIDGPEDVEVTTLYPEDSFR--TVEECFGEYIVKMEEKQPT 324 (346)
T ss_dssp HHHTTCTTTSSCCCSTTEEEHHHHSTTCCCC--CHHHHHHHHHCC-------
T ss_pred HHhccCCCcccccCCCCcccHHHhCCCCCcC--cHHHHHHHHHHHhhccccc
Confidence 00111 01112222 255554 7999999999999887543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=252.37 Aligned_cols=213 Identities=17% Similarity=0.190 Sum_probs=183.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|.||+||||||||+||++|+++|+++|++|++++|...... ..++.++.+|++|.+++.+++ .++|
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~--~~~D 66 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMV--AGCD 66 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHH--TTCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHH--cCCC
Confidence 34789999999999999999999999999999998654322 258899999999999999999 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC-CCCCCCCCCCCCCCChHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP-DKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
+||||||.. ...+....+++|+.++.+++++|++.+++++|++||..+||.. ...+++|+.+..|.+.|+.+|..
T Consensus 67 ~vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~ 142 (267)
T 3rft_A 67 GIVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCF 142 (267)
T ss_dssp EEEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHH
T ss_pred EEEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHH
Confidence 999999984 3456788999999999999999999999999999999999743 45689999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|.+++.++.+.+++++++||+.|||+.. ++...++|
T Consensus 143 ~e~~~~~~a~~~g~~~~~vr~~~v~~~~~-------------------------------------------~~~~~~~~ 179 (267)
T 3rft_A 143 GENLARMYFDKFGQETALVRIGSCTPEPN-------------------------------------------NYRMLSTW 179 (267)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECBCSSSCC-------------------------------------------STTHHHHB
T ss_pred HHHHHHHHHHHhCCeEEEEEeecccCCCC-------------------------------------------CCCceeeE
Confidence 99999999988999999999999998631 34566789
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHH
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK 321 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~ 321 (393)
++++|+++++..+++.+.... .++++.++++.++.
T Consensus 180 ~~~~d~a~~~~~~~~~~~~~~-~~~~~~s~~~~~~~ 214 (267)
T 3rft_A 180 FSHDDFVSLIEAVFRAPVLGC-PVVWGASANDAGWW 214 (267)
T ss_dssp CCHHHHHHHHHHHHHCSCCCS-CEEEECCCCTTCCB
T ss_pred EcHHHHHHHHHHHHhCCCCCc-eEEEEeCCCCCCcc
Confidence 999999999999999776543 57778777655443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=244.08 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=171.6
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCcc-EEEEccCCCHHHHHHHHh
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQL-QFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~ 121 (393)
......+|+||||||||+||++|+++|+++|++|++++|...... .+.. .++ +++.+|++ +++.+++
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~----~~~~-----~~~~~~~~~Dl~--~~~~~~~- 82 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGP----ELRE-----RGASDIVVANLE--EDFSHAF- 82 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH----HHHH-----TTCSEEEECCTT--SCCGGGG-
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHH----HHHh-----CCCceEEEcccH--HHHHHHH-
Confidence 344567789999999999999999999999999999998543221 1211 378 99999998 6777778
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHH
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGK 201 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~ 201 (393)
.++|+|||+||... ..++...+++|+.++.+++++|++.+++++|++||.+.+.. |..+ .+.+.|+.
T Consensus 83 -~~~D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~~~-~~~~~Y~~ 149 (236)
T 3e8x_A 83 -ASIDAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQGP-MNMRHYLV 149 (236)
T ss_dssp -TTCSEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GGSC-GGGHHHHH
T ss_pred -cCCCEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CCCh-hhhhhHHH
Confidence 79999999999753 35678899999999999999999999999999999544322 2222 56789999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|..+|.+++. .+++++++||+.++|+...+. +...+ .+..
T Consensus 150 sK~~~e~~~~~----~gi~~~~lrpg~v~~~~~~~~-----------------------------~~~~~------~~~~ 190 (236)
T 3e8x_A 150 AKRLADDELKR----SSLDYTIVRPGPLSNEESTGK-----------------------------VTVSP------HFSE 190 (236)
T ss_dssp HHHHHHHHHHH----SSSEEEEEEECSEECSCCCSE-----------------------------EEEES------SCSC
T ss_pred HHHHHHHHHHH----CCCCEEEEeCCcccCCCCCCe-----------------------------EEecc------CCCc
Confidence 99999998874 899999999999999853210 22222 3445
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHH
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACK 328 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~ 328 (393)
.+++++++|+|++++.+++.+.. .+++||++++ .+++.|+++.+.
T Consensus 191 ~~~~i~~~Dva~~~~~~~~~~~~-~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 191 ITRSITRHDVAKVIAELVDQQHT-IGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CCCCEEHHHHHHHHHHHTTCGGG-TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred ccCcEeHHHHHHHHHHHhcCccc-cCCeEEEeCC-CcCHHHHHHHhc
Confidence 68899999999999999987643 3479999887 599999998765
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=241.61 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=171.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC-HHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD-AKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~V 128 (393)
|+||||||||+||++++++|+++|++|++++|....... ..+++++.+|+.| .+++.+++ .++|+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~--~~~d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----------YNNVKAVHFDVDWTPEEMAKQL--HGMDAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-----------CTTEEEEECCTTSCHHHHHTTT--TTCSEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-----------cCCceEEEecccCCHHHHHHHH--cCCCEE
Confidence 589999999999999999999999999999986432221 1589999999999 99999999 789999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+.... ..+++|+.++.+++++|++.+++++|++||.++++.. +.+| .+..|.++|+.+|..+|+
T Consensus 68 i~~ag~~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e-~~~~~~~~Y~~sK~~~e~ 135 (219)
T 3dqp_A 68 INVSGSGGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG-AGFDALKDYYIAKHFADL 135 (219)
T ss_dssp EECCCCTTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS-HHHHHTHHHHHHHHHHHH
T ss_pred EECCcCCCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc-cccccccHHHHHHHHHHH
Confidence 999997642 1566889999999999999999999999997776532 4455 556678899999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
+++ +..+++++++||+.+||+...+ . +.. ++..++++++
T Consensus 136 ~~~---~~~~i~~~ilrp~~v~g~~~~~--------------~---------------~~~---------~~~~~~~i~~ 174 (219)
T 3dqp_A 136 YLT---KETNLDYTIIQPGALTEEEATG--------------L---------------IDI---------NDEVSASNTI 174 (219)
T ss_dssp HHH---HSCCCEEEEEEECSEECSCCCS--------------E---------------EEE---------SSSCCCCEEH
T ss_pred HHH---hccCCcEEEEeCceEecCCCCC--------------c---------------ccc---------CCCcCCcccH
Confidence 986 3489999999999999985331 1 111 2456789999
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHH
Q 016208 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA 326 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~ 326 (393)
+|+|++++.+++.+... +++||+++++ .++.|+++.
T Consensus 175 ~Dva~~i~~~l~~~~~~-g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 175 GDVADTIKELVMTDHSI-GKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp HHHHHHHHHHHTCGGGT-TEEEEEEECS-EEHHHHHHT
T ss_pred HHHHHHHHHHHhCcccc-CcEEEeCCCC-ccHHHHHHH
Confidence 99999999999976542 4799998774 899988764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=239.97 Aligned_cols=257 Identities=15% Similarity=0.160 Sum_probs=188.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|+||||||||+||++++++|++. |++|++++|........ . ..+++++.+|+.|++++.+++ .++|+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~----~-----~~~v~~~~~D~~d~~~l~~~~--~~~d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD----W-----RGKVSVRQLDYFNQESMVEAF--KGMDTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG----G-----BTTBEEEECCTTCHHHHHHHT--TTCSEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh----h-----hCCCEEEEcCCCCHHHHHHHH--hCCCEE
Confidence 57999999999999999999998 99999999865432211 1 258999999999999999999 799999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
||+|+.... ...|+.++.+++++|++.++++|||+||.+ ... ..+. .+...+..+|.
T Consensus 70 i~~a~~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~---~~~------~~~~----~~~~~~~~~e~ 126 (289)
T 3e48_A 70 VFIPSIIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYA---DQH------NNPF----HMSPYFGYASR 126 (289)
T ss_dssp EECCCCCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESC---CST------TCCS----TTHHHHHHHHH
T ss_pred EEeCCCCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccC---CCC------CCCC----ccchhHHHHHH
Confidence 999986532 134789999999999999999999999943 211 1111 12222334555
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
.+.. .|+++++|||+.+||+. ...+......+ ....+ .++..++++|+
T Consensus 127 ~~~~----~g~~~~ilrp~~~~~~~-------------------~~~~~~~~~~~---~~~~~------~g~~~~~~i~~ 174 (289)
T 3e48_A 127 LLST----SGIDYTYVRMAMYMDPL-------------------KPYLPELMNMH---KLIYP------AGDGRINYITR 174 (289)
T ss_dssp HHHH----HCCEEEEEEECEESTTH-------------------HHHHHHHHHHT---EECCC------CTTCEEEEECH
T ss_pred HHHH----cCCCEEEEecccccccc-------------------HHHHHHHHHCC---CEecC------CCCceeeeEEH
Confidence 5543 79999999999999862 23333333222 22222 67888999999
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC-------C-CCC-------------
Q 016208 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR-------P-GDY------------- 347 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-------~-~~~------------- 347 (393)
+|+|++++.++..+... +++||++ ++.+|+.|+++.+.+.+|.++++...+.. . ...
T Consensus 175 ~Dva~~~~~~l~~~~~~-g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 252 (289)
T 3e48_A 175 NDIARGVIAIIKNPDTW-GKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGAR 252 (289)
T ss_dssp HHHHHHHHHHHHCGGGT-TCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcC-CceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHC
Confidence 99999999999976543 4799999 99999999999999999998765543311 0 110
Q ss_pred cceecCHHHHHhhCCCceeccCHHHHHHH
Q 016208 348 AEVYSDPSKIRDELNWTARFTDLQGSLQI 376 (393)
Q Consensus 348 ~~~~~d~~k~~~~lG~~p~~~~~~e~l~~ 376 (393)
.....+...+++.+|+.|+ +++|-+++
T Consensus 253 g~~~~~~~~~~~~~G~~p~--~~~~~~~~ 279 (289)
T 3e48_A 253 GLLDQESNDFKQLVNDQPQ--TLQSFLQE 279 (289)
T ss_dssp TTTCCCCSHHHHHHSSCCC--CHHHHHHC
T ss_pred CCccccCchHHHHhCCCCC--CHHHHHHH
Confidence 0122345567778899887 68875554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=232.21 Aligned_cols=218 Identities=12% Similarity=0.020 Sum_probs=161.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+||||||||+||++|+++|+++|++|++++|..... ..+. ..+++++.+|+.|.++ +++ .++|+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-------~~~~--~~~~~~~~~D~~d~~~--~~~--~~~d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-------ADRL--GATVATLVKEPLVLTE--ADL--DSVDAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-------HHHT--CTTSEEEECCGGGCCH--HHH--TTCSEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc-------cccc--CCCceEEecccccccH--hhc--ccCCEEE
Confidence 5799999999999999999999999999998853221 1111 2589999999999988 667 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCC---CCCCCCCCCCCCChHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDK---MPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~---~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
|+||..... .....|+.++.+++++|++.+ +++|++||.+.+..... .+.+|+..+.|.+.|+.+|..+
T Consensus 68 ~~ag~~~~~-------~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~ 139 (224)
T 3h2s_A 68 DALSVPWGS-------GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQY 139 (224)
T ss_dssp ECCCCCTTS-------SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHH
T ss_pred ECCccCCCc-------chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHH
Confidence 999975211 124679999999999999999 89999999866543322 2455555566689999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|. +..+.+..+++++++||+.+||++... .+. ..... +. .+...++++
T Consensus 140 e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~--------------~~~-------~~~~~-~~---------~~~~~~~~i 187 (224)
T 3h2s_A 140 YE-YQFLQMNANVNWIGISPSEAFPSGPAT--------------SYV-------AGKDT-LL---------VGEDGQSHI 187 (224)
T ss_dssp HH-HHHHTTCTTSCEEEEEECSBCCCCCCC--------------CEE-------EESSB-CC---------CCTTSCCBC
T ss_pred HH-HHHHHhcCCCcEEEEcCccccCCCccc--------------Cce-------ecccc-cc---------cCCCCCceE
Confidence 94 455655689999999999999985321 100 00011 11 233456899
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHH
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK 321 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~ 321 (393)
+++|+|++++.+++.+... +++|++++.+..++.
T Consensus 188 ~~~DvA~~~~~~l~~~~~~-g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 188 TTGNMALAILDQLEHPTAI-RDRIVVRDADLEHHH 221 (224)
T ss_dssp CHHHHHHHHHHHHHSCCCT-TSEEEEEECC-----
T ss_pred eHHHHHHHHHHHhcCcccc-CCEEEEecCcchhcc
Confidence 9999999999999987653 479999887665543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=228.17 Aligned_cols=218 Identities=11% Similarity=0.092 Sum_probs=145.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+||||||||+||++|+++|+++|++|++++|.... +..+. .+++++.+|+.|.++ +++ .++|+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~-------~~~~~---~~~~~~~~D~~d~~~--~~~--~~~d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK-------ITQTH---KDINILQKDIFDLTL--SDL--SDQNVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH-------HHHHC---SSSEEEECCGGGCCH--HHH--TTCSEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh-------hhhcc---CCCeEEeccccChhh--hhh--cCCCEEE
Confidence 589999999999999999999999999999985322 11111 578999999999987 667 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC-CCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE-PDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~-~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
|+|+.... ..+.|+.++.+++++|++.+++++|++||.++|.. ....+..|+.+..|.+.|+.+|...|.
T Consensus 67 ~~ag~~~~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~ 137 (221)
T 3ew7_A 67 DAYGISPD---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQ 137 (221)
T ss_dssp ECCCSSTT---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHH
T ss_pred ECCcCCcc---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHH
Confidence 99997421 13568999999999999998899999999876543 333467777888888999999999998
Q ss_pred HHHHHHh-hCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 209 IIIDFSK-TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 209 ~~~~~~~-~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
+ ..+.+ ..+++++++||+.+||++.... .+ .....+ +.+.+ ++ .++++
T Consensus 138 ~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~-------------~~-------~~~~~~-~~~~~------~~---~~~i~ 186 (221)
T 3ew7_A 138 L-EHLKSHQAEFSWTYISPSAMFEPGERTG-------------DY-------QIGKDH-LLFGS------DG---NSFIS 186 (221)
T ss_dssp H-HHHHTTTTTSCEEEEECSSCCCCC---------------------------------------------------CCC
T ss_pred H-HHHHhhccCccEEEEeCcceecCCCccC-------------ce-------Eecccc-ceecC------CC---CceEe
Confidence 6 33333 5899999999999999842100 11 011111 22322 22 26999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHH
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKE 322 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~e 322 (393)
++|+|++++.+++.+... +++||++++.+.+.+|
T Consensus 187 ~~Dva~~~~~~l~~~~~~-g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 187 MEDYAIAVLDEIERPNHL-NEHFTVAGKLEHHHHH 220 (221)
T ss_dssp HHHHHHHHHHHHHSCSCT-TSEEECCC--------
T ss_pred HHHHHHHHHHHHhCcccc-CCEEEECCCCcccccc
Confidence 999999999999987653 4799999887776654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=231.30 Aligned_cols=231 Identities=16% Similarity=0.188 Sum_probs=173.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+.||+||||||||+||++++++|+++ |++|++++|.... ...+ ..++.++.+|+.|.+++.+++ .+
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~-------~~~~---~~~~~~~~~D~~d~~~~~~~~--~~ 69 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG-------KEKI---GGEADVFIGDITDADSINPAF--QG 69 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH-------HHHT---TCCTTEEECCTTSHHHHHHHH--TT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc-------hhhc---CCCeeEEEecCCCHHHHHHHH--cC
Confidence 34689999999999999999999999 8999999885321 1111 257889999999999999999 78
Q ss_pred CcEEEEcccccCccC-------------CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE-------------STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~-------------~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
+|+|||+|+...... ........+++|+.++.+++++|++.+++++|++||.+++. |..
T Consensus 70 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~--------~~~ 141 (253)
T 1xq6_A 70 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN--------PDH 141 (253)
T ss_dssp CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC--------TTC
T ss_pred CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCC--------CCC
Confidence 999999999753211 01112346789999999999999999999999999987642 222
Q ss_pred CCCCC--ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 192 PQKPI--NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 192 ~~~p~--~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
+..+. ..|+.+|..+|.+++. .+++++++||+.+||+..... .++ .. .. ..+
T Consensus 142 ~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~-------------~~~-------~~-~~-~~~ 195 (253)
T 1xq6_A 142 PLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-------------ELL-------VG-KD-DEL 195 (253)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS-------------CEE-------EE-ST-TGG
T ss_pred ccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh-------------hhh-------cc-CC-cCC
Confidence 22222 4588899999998865 799999999999999853210 000 00 00 000
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC---cccHHHHHHHHHHHhCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK---GRSVKEFVEACKKATGV 333 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~---~~s~~el~~~i~~~~g~ 333 (393)
.+ ...+++|++|+|++++.+++.+.. .+++||+++++ .+|+.|+++.+.+.+|+
T Consensus 196 ~~---------~~~~~~~~~Dva~~~~~~~~~~~~-~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 196 LQ---------TDTKTVPRADVAEVCIQALLFEEA-KNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp GG---------SSCCEEEHHHHHHHHHHHTTCGGG-TTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred cC---------CCCcEEcHHHHHHHHHHHHcCccc-cCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 01 124689999999999999986543 34799999864 59999999999998875
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=238.53 Aligned_cols=238 Identities=15% Similarity=0.092 Sum_probs=180.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+|+|+||||||+||++++++|+++| ++|++++|...... ...+.. .+++++.+|+.|++++.+++ .++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~--~~~l~~-----~~~~~~~~D~~d~~~l~~~~--~~~d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA--AKELRL-----QGAEVVQGDQDDQVIMELAL--NGAYA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH--HHHHHH-----TTCEEEECCTTCHHHHHHHH--TTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH--HHHHHH-----CCCEEEEecCCCHHHHHHHH--hcCCE
Confidence 4799999999999999999999999 99999998644321 111211 47899999999999999999 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|||+++..... ..+.|+.++.+++++|++.+++++|++||.++|+...+ .+..+|+.+|..+|
T Consensus 76 vi~~a~~~~~~--------~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~---------~~~~~y~~sK~~~e 138 (299)
T 2wm3_A 76 TFIVTNYWESC--------SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAG---------RLAAAHFDGKGEVE 138 (299)
T ss_dssp EEECCCHHHHT--------CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTT---------SCCCHHHHHHHHHH
T ss_pred EEEeCCCCccc--------cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCC---------cccCchhhHHHHHH
Confidence 99999853210 13567889999999999999999999998888753221 13578999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
++++. .|+++++|||+.+||+... .+.+ .....+.. ..+ ..+.++..++++|
T Consensus 139 ~~~~~----~gi~~~ilrp~~~~~~~~~---------------~~~~---~~~~~g~~-~~~-----~~~~~~~~~~~i~ 190 (299)
T 2wm3_A 139 EYFRD----IGVPMTSVRLPCYFENLLS---------------HFLP---QKAPDGKS-YLL-----SLPTGDVPMDGMS 190 (299)
T ss_dssp HHHHH----HTCCEEEEECCEEGGGGGT---------------TTCC---EECTTSSS-EEE-----CCCCTTSCEEEEC
T ss_pred HHHHH----CCCCEEEEeecHHhhhchh---------------hcCC---cccCCCCE-EEE-----EecCCCCccceec
Confidence 99876 5899999999999996321 0000 00111111 111 1224677889999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
++|+|++++.++..+....+++|++++ +.+|+.|+++.+.+.+|.+++....+
T Consensus 191 ~~Dva~~~~~~l~~~~~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~ 243 (299)
T 2wm3_A 191 VSDLGPVVLSLLKMPEKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMT 243 (299)
T ss_dssp GGGHHHHHHHHHHSHHHHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCC
T ss_pred HHHHHHHHHHHHcChhhhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecC
Confidence 999999999999864211236999975 68999999999999999887654443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=235.40 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=177.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
||+|+||||||+||++++++|+++|++|++++|..... ....+.+..+. ..+++++.+|+.|++++.+++ .++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~--~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDAL--KQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHH--TTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHH--hCCCE
Confidence 67999999999999999999999999999999865432 11222222221 257899999999999999999 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAKKM 205 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~sK~~ 205 (393)
|||+++..... .|+.++.+++++|++.+ +++||+ | +||.....+ +.+..| ...| .+|..
T Consensus 80 vi~~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~---~~~~~p~~~~y-~sK~~ 140 (313)
T 1qyd_A 80 VISALAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM---EHALQPGSITF-IDKRK 140 (313)
T ss_dssp EEECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC---CCCCSSTTHHH-HHHHH
T ss_pred EEECCccccch-----------hhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc---ccCCCCCcchH-HHHHH
Confidence 99999875321 26778899999999998 999985 3 455432211 223344 4568 99999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|++++. .+++++++||+.++|+.... +............. +.+.+ +++..+++
T Consensus 141 ~e~~~~~----~g~~~~ilrp~~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~------~g~~~~~~ 194 (313)
T 1qyd_A 141 VRRAIEA----ASIPYTYVSSNMFAGYFAGS---------------LAQLDGHMMPPRDK-VLIYG------DGNVKGIW 194 (313)
T ss_dssp HHHHHHH----TTCCBCEEECCEEHHHHTTT---------------SSCTTCCSSCCSSE-ECCBT------TSCSEEEE
T ss_pred HHHHHHh----cCCCeEEEEeceeccccccc---------------cccccccccCCCCe-EEEeC------CCCceEEE
Confidence 9998875 78999999999988752110 00000000011112 33444 78889999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
+|++|+|++++.+++.+... ++.|++++ ++.+|+.|+++.+.+.+|.+.+....+
T Consensus 195 i~~~Dva~~~~~~l~~~~~~-~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 195 VDEDDVGTYTIKSIDDPQTL-NKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp ECHHHHHHHHHHHTTCGGGS-SSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred EEHHHHHHHHHHHHhCcccC-CceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 99999999999999865432 36777765 478999999999999999887765443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=237.23 Aligned_cols=240 Identities=12% Similarity=0.053 Sum_probs=177.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEcc-CCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD-LGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~d~ 127 (393)
+|+|+|||||||||++|+++|+++|++|++++|...... .+.+.. ..+++++.+| +.|++++.+++ .++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~----~~~v~~v~~D~l~d~~~l~~~~--~~~d~ 76 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA----IPNVTLFQGPLLNNVPLMDTLF--EGAHL 76 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT----STTEEEEESCCTTCHHHHHHHH--TTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh----cCCcEEEECCccCCHHHHHHHH--hcCCE
Confidence 478999999999999999999999999999998644321 111211 1478899999 99999999999 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecce--eecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCA--TYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~--vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
|||+++.... ..|..+ .+++++|++.+ +++|||+||.+ .|+. .+.++|+.+|.
T Consensus 77 Vi~~a~~~~~-----------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------------~~~~~y~~sK~ 132 (352)
T 1xgk_A 77 AFINTTSQAG-----------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP------------WPAVPMWAPKF 132 (352)
T ss_dssp EEECCCSTTS-----------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS------------CCCCTTTHHHH
T ss_pred EEEcCCCCCc-----------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC------------CCCccHHHHHH
Confidence 9999975311 236666 99999999998 99999999975 2321 23478999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.+|++++. .+++++++||+ +||++....+. .++.. .....+...+.+.+ ++++.++
T Consensus 133 ~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~-----------~~~~~--~~~~~g~~~~~~~~------~~~~~~~ 188 (352)
T 1xgk_A 133 TVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPY-----------PLFQM--ELMPDGTFEWHAPF------DPDIPLP 188 (352)
T ss_dssp HHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSC-----------SSCBE--EECTTSCEEEEESS------CTTSCEE
T ss_pred HHHHHHHH----cCCCEEEEecc-eecCCchhccc-----------ccccc--cccCCCceEEeecc------CCCCcee
Confidence 99999877 58999999976 78886432110 00000 00112221122333 5778899
Q ss_pred cccH-HHHHHHHHHHHhcCCC-CCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCC
Q 016208 285 YIDV-TDLVDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG 345 (393)
Q Consensus 285 ~i~v-~Dva~a~~~~l~~~~~-~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~ 345 (393)
++|+ +|+|++++.+++.+.. ..+++||+++ +.+|+.|+++.+.+.+|.+.+....|.+..
T Consensus 189 ~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~~ 250 (352)
T 1xgk_A 189 WLDAEHDVGPALLQIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEI 250 (352)
T ss_dssp EECHHHHHHHHHHHHHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCCC
T ss_pred eEecHHHHHHHHHHHHhCCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHHH
Confidence 9999 8999999999986421 1236999985 679999999999999999988777765443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=231.17 Aligned_cols=230 Identities=15% Similarity=0.151 Sum_probs=174.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
++|+||||||+||++|+++|+++|++|++++|...........+.. .+++++.+|+.|++++.+++ .++|+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~-----~~v~~v~~Dl~d~~~l~~a~--~~~d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS-----LGAIIVKGELDEHEKLVELM--KKVDVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH-----TTCEEEECCTTCHHHHHHHH--TTCSEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc-----CCCEEEEecCCCHHHHHHHH--cCCCEEE
Confidence 5899999999999999999999999999999965422211111211 47899999999999999999 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAKKMSE 207 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~sK~~~E 207 (393)
|+++... +.++.+++++|++.+ +++||+ | +||.. .+|..+..| ...| .+|..+|
T Consensus 85 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK~~~e 140 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVE----EDRINALPPFEALI-ERKRMIR 140 (318)
T ss_dssp ECCCGGG---------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSC----TTTCCCCHHHHHHH-HHHHHHH
T ss_pred ECCchhh---------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccC----cccccCCCCcchhH-HHHHHHH
Confidence 9998532 456789999999998 999985 3 35532 233334334 3568 9999999
Q ss_pred HHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 208 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
++++. .+++++++||+.+++ .+++.+......... +.+.+ +++..++++|
T Consensus 141 ~~~~~----~~~~~~~lr~~~~~~-------------------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~i~ 190 (318)
T 2r6j_A 141 RAIEE----ANIPYTYVSANCFAS-------------------YFINYLLRPYDPKDE-ITVYG------TGEAKFAMNY 190 (318)
T ss_dssp HHHHH----TTCCBEEEECCEEHH-------------------HHHHHHHCTTCCCSE-EEEET------TSCCEEEEEC
T ss_pred HHHHh----cCCCeEEEEcceehh-------------------hhhhhhccccCCCCc-eEEec------CCCceeeEee
Confidence 98876 789999999988775 334433332222333 55555 7888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 288 VTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 288 v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
++|++++++.+++.+... +++|++.+ ++.+|+.|+++.+.+.+|.++++...+
T Consensus 191 ~~Dva~~~~~~l~~~~~~-~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 191 EQDIGLYTIKVATDPRAL-NRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp HHHHHHHHHHHTTCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred HHHHHHHHHHHhcCcccc-CeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 999999999999865432 36777764 578999999999999999988765544
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-30 Score=224.51 Aligned_cols=204 Identities=15% Similarity=0.090 Sum_probs=161.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+|+|+||||||+||++++++|+++|+ +|++++|..... ..+++++.+|+.+++++.+++ +|
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~-------------~~~~~~~~~D~~~~~~~~~~~----~d 67 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------------HPRLDNPVGPLAELLPQLDGS----ID 67 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------------CTTEECCBSCHHHHGGGCCSC----CS
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc-------------CCCceEEeccccCHHHHHHhh----hc
Confidence 47999999999999999999999998 999998865431 247888889998887776654 99
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||+|+..... ..+....+++|+.++.+++++|++.+++++|++||..+|+. |.++|+.+|..+
T Consensus 68 ~vi~~a~~~~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~-------------~~~~y~~sK~~~ 132 (215)
T 2a35_A 68 TAFCCLGTTIKE--AGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK-------------SSIFYNRVKGEL 132 (215)
T ss_dssp EEEECCCCCHHH--HSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHHH
T ss_pred EEEECeeecccc--CCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC-------------CccHHHHHHHHH
Confidence 999999975431 34677889999999999999999999999999999988853 357999999999
Q ss_pred HHHHHHHHhhCCCc-EEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 207 EDIIIDFSKTTNMA-VMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 207 E~~~~~~~~~~g~~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
|++++. .+++ ++++||+.+||+.... .+...+. . .. .++ + ++ .+++
T Consensus 133 e~~~~~----~~~~~~~~vrp~~v~g~~~~~--------------~~~~~~~----~-~~-~~~-~------~~--~~~~ 179 (215)
T 2a35_A 133 EQALQE----QGWPQLTIARPSLLFGPREEF--------------RLAEILA----A-PI-ARI-L------PG--KYHG 179 (215)
T ss_dssp HHHHTT----SCCSEEEEEECCSEESTTSCE--------------EGGGGTT----C-CC-C-----------C--HHHH
T ss_pred HHHHHH----cCCCeEEEEeCceeeCCCCcc--------------hHHHHHH----H-hh-hhc-c------CC--CcCc
Confidence 999876 5899 9999999999986431 2222111 1 11 111 1 22 6789
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccH
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~ 320 (393)
+|++|+|++++.+++.+. +++||+++++.+++
T Consensus 180 i~~~Dva~~~~~~~~~~~---~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 180 IEACDLARALWRLALEEG---KGVRFVESDELRKL 211 (215)
T ss_dssp HHHHHHHHHHHHHHTCCC---SEEEEEEHHHHHHH
T ss_pred EeHHHHHHHHHHHHhcCC---CCceEEcHHHHHHh
Confidence 999999999999998764 36999998776554
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=230.10 Aligned_cols=235 Identities=14% Similarity=0.155 Sum_probs=175.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC-CCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.||+|+||||||+||++|+++|+++|++|++++|.. ... ....+.+..+. ..+++++.+|+.|++++.+++ .++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~--~~~v~~v~~D~~d~~~l~~a~--~~~ 78 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR--SMGVTIIEGEMEEHEKMVSVL--KQV 78 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHH--TTC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh--cCCcEEEEecCCCHHHHHHHH--cCC
Confidence 468899999999999999999999999999999964 211 11122222111 157899999999999999999 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAK 203 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~sK 203 (393)
|+|||+|+... +.++.+++++|++.+ +++||+ | +||.. .+|..+..| .+.| .+|
T Consensus 79 d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK 134 (321)
T 3c1o_A 79 DIVISALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCE----EDRIKPLPPFESVL-EKK 134 (321)
T ss_dssp SEEEECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSC----GGGCCCCHHHHHHH-HHH
T ss_pred CEEEECCCccc---------------hhhHHHHHHHHHHhCCccEEec-c---ccccC----ccccccCCCcchHH-HHH
Confidence 99999998632 456789999999998 999983 3 45432 233344444 4579 999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH---HhCCCCceeEcCccccCCCCc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA---ARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~g~ 280 (393)
..+|.+++. .++++++|||+.++++ +.+.+... ...... +.+.+ +++
T Consensus 135 ~~~e~~~~~----~~~~~~~lrp~~~~~~-------------------~~~~~~~~~~~~~~~~~-~~~~~------~~~ 184 (321)
T 3c1o_A 135 RIIRRAIEA----AALPYTYVSANCFGAY-------------------FVNYLLHPSPHPNRNDD-IVIYG------TGE 184 (321)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHH-------------------HHHHHHCCCSSCCTTSC-EEEET------TSC
T ss_pred HHHHHHHHH----cCCCeEEEEeceeccc-------------------cccccccccccccccCc-eEEec------CCC
Confidence 999998875 5899999999988873 33322221 112223 55555 788
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
..++++|++|+|++++.++..+... +++|++++ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 185 ~~~~~i~~~Dva~~~~~~l~~~~~~-g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 185 TKFVLNYEEDIAKYTIKVACDPRCC-NRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp CEEEEECHHHHHHHHHHHHHCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred cceeEeeHHHHHHHHHHHHhCcccc-CeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 8999999999999999999865432 36788865 578999999999999999988765544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=230.07 Aligned_cols=237 Identities=16% Similarity=0.200 Sum_probs=175.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC--chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||+|+||||||+||++|+++|+++|++|++++|..... ....+.+..+. ..+++++.+|+.|++++.+++ .++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~--~~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAV--KNVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHH--HTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHH--cCCC
Confidence 68999999999999999999999999999999865432 12222222221 257999999999999999999 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAKK 204 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~sK~ 204 (393)
+|||+|+... +.++.+++++|++++ +++||+ |+ ||.. .+|..+..| ...| .+|.
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~----~~~~~~~~p~~~~y-~sK~ 135 (308)
T 1qyc_A 80 VVISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SE---FGND----VDNVHAVEPAKSVF-EVKA 135 (308)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSC----TTSCCCCTTHHHHH-HHHH
T ss_pred EEEECCcchh---------------hhhHHHHHHHHHhcCCCceEee-cc---cccC----ccccccCCcchhHH-HHHH
Confidence 9999998632 445789999999998 999984 43 5432 233344445 4568 9999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.+|++++. .+++++++||+.++|+.... +.... ........ +.+.+ +++..++
T Consensus 136 ~~e~~~~~----~~~~~~~~r~~~~~~~~~~~---------------~~~~~-~~~~~~~~-~~~~~------~~~~~~~ 188 (308)
T 1qyc_A 136 KVRRAIEA----EGIPYTYVSSNCFAGYFLRS---------------LAQAG-LTAPPRDK-VVILG------DGNARVV 188 (308)
T ss_dssp HHHHHHHH----HTCCBEEEECCEEHHHHTTT---------------TTCTT-CSSCCSSE-EEEET------TSCCEEE
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccc---------------ccccc-ccCCCCCc-eEEec------CCCceEE
Confidence 99998876 58999999999998753210 00000 00011222 55555 7888999
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
++|++|+|++++.+++.+... +++|++++ ++.+|+.|+++.+.+.+|.+.+....+
T Consensus 189 ~i~~~Dva~~~~~~l~~~~~~-~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 189 FVKEEDIGTFTIKAVDDPRTL-NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp EECHHHHHHHHHTTSSCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred EecHHHHHHHHHHHHhCcccc-CeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 999999999999988865432 36788865 478999999999999999988766544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=205.39 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=155.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|+||||||+||++++++|+++|++|++++|....... . ...+++++.+|+.|++++.+++ .++|+||
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~-------~--~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi 72 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-------E--GPRPAHVVVGDVLQAADVDKTV--AGQDAVI 72 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-------S--SCCCSEEEESCTTSHHHHHHHH--TTCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc-------c--cCCceEEEEecCCCHHHHHHHH--cCCCEEE
Confidence 799999999999999999999999999999985432211 0 0257899999999999999999 7899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+..... ++ .+.|+.++.+++++|++.+++++|++||.++|+..... +.+..+|+.+|..+|.+
T Consensus 73 ~~a~~~~~~----~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-------~~~~~~y~~~K~~~e~~ 138 (206)
T 1hdo_A 73 VLLGTRNDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-------PPRLQAVTDDHIRMHKV 138 (206)
T ss_dssp ECCCCTTCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-------CGGGHHHHHHHHHHHHH
T ss_pred ECccCCCCC----Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc-------cccchhHHHHHHHHHHH
Confidence 999975431 11 24889999999999999999999999999998764321 11567899999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
++. .+++++++||+.+ +++... . .+. ..+.+ .+. .+++|++
T Consensus 139 ~~~----~~i~~~~lrp~~~-~~~~~~------~-------~~~-------------~~~~~------~~~--~~~i~~~ 179 (206)
T 1hdo_A 139 LRE----SGLKYVAVMPPHI-GDQPLT------G-------AYT-------------VTLDG------RGP--SRVISKH 179 (206)
T ss_dssp HHH----TCSEEEEECCSEE-ECCCCC------S-------CCE-------------EESSS------CSS--CSEEEHH
T ss_pred HHh----CCCCEEEEeCCcc-cCCCCC------c-------ceE-------------ecccC------CCC--CCccCHH
Confidence 865 7899999999997 433110 0 110 00001 010 4799999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCC
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGK 316 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~ 316 (393)
|+|++++.+++.+.. .+++|++++++
T Consensus 180 Dva~~~~~~~~~~~~-~g~~~~i~~g~ 205 (206)
T 1hdo_A 180 DLGHFMLRCLTTDEY-DGHSTYPSHQY 205 (206)
T ss_dssp HHHHHHHHTTSCSTT-TTCEEEEECCC
T ss_pred HHHHHHHHHhcCccc-cccceeeeccc
Confidence 999999999987643 34799998764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=216.78 Aligned_cols=208 Identities=13% Similarity=0.062 Sum_probs=160.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|+|+||||||+||++++++|+++|+ +|++++|......... ..++.++.+|+.|++++.+++ .++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~--~~~ 85 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---------YKNVNQEVVDFEKLDDYASAF--QGH 85 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---------GGGCEEEECCGGGGGGGGGGG--SSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc---------cCCceEEecCcCCHHHHHHHh--cCC
Confidence 347999999999999999999999999 9999998654332111 136889999999999999998 689
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|+|||+||..... ......+++|+.++.+++++|++.+++++|++||.++|+. +..+|+.+|..
T Consensus 86 d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-------------~~~~Y~~sK~~ 149 (242)
T 2bka_A 86 DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-------------SNFLYLQVKGE 149 (242)
T ss_dssp SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHH
T ss_pred CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC-------------CcchHHHHHHH
Confidence 9999999975331 2356788999999999999999999899999999988752 34689999999
Q ss_pred HHHHHHHHHhhCCC-cEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 206 SEDIIIDFSKTTNM-AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 206 ~E~~~~~~~~~~g~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
.|.+++. .++ +++++||+.+||+.... .....+........+ .......
T Consensus 150 ~e~~~~~----~~~~~~~~vrpg~v~~~~~~~--------------~~~~~~~~~~~~~~~------------~~~~~~~ 199 (242)
T 2bka_A 150 VEAKVEE----LKFDRYSVFRPGVLLCDRQES--------------RPGEWLVRKFFGSLP------------DSWASGH 199 (242)
T ss_dssp HHHHHHT----TCCSEEEEEECCEEECTTGGG--------------SHHHHHHHHHHCSCC------------TTGGGGT
T ss_pred HHHHHHh----cCCCCeEEEcCceecCCCCCC--------------cHHHHHHHHhhcccC------------ccccCCc
Confidence 9999876 567 69999999999985321 223333333333322 0111235
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecC
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGT 314 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~ 314 (393)
+++++|+|++++.+++.+... +.|.+.+
T Consensus 200 ~~~~~dva~~~~~~~~~~~~~--~~~~~~~ 227 (242)
T 2bka_A 200 SVPVVTVVRAMLNNVVRPRDK--QMELLEN 227 (242)
T ss_dssp EEEHHHHHHHHHHHHTSCCCS--SEEEEEH
T ss_pred ccCHHHHHHHHHHHHhCcccc--CeeEeeH
Confidence 899999999999999876543 4676643
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=224.30 Aligned_cols=237 Identities=15% Similarity=0.187 Sum_probs=174.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC-CCCc--hhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGNM--GAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
||+|+||||||+||++|+++|+++|++|++++|.. .... ...+.+..+. ..+++++.+|+.|++++.+++ .++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~--~~~ 77 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ--SLGVILLEGDINDHETLVKAI--KQV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHH--TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH--hCCCEEEEeCCCCHHHHHHHH--hCC
Confidence 68999999999999999999999999999999864 1111 1111222211 147899999999999999999 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCCCCCCCCCCC-CChHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAK 203 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p-~~~Y~~sK 203 (393)
|+|||+|+... +.++.+++++|++.+ +++||+ | +||.. .+|..+..| .+.| .+|
T Consensus 78 d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK 133 (307)
T 2gas_A 78 DIVICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLD----VDRHDAVEPVRQVF-EEK 133 (307)
T ss_dssp SEEEECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSC----TTSCCCCTTHHHHH-HHH
T ss_pred CEEEECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccC----cccccCCCcchhHH-HHH
Confidence 99999998642 456789999999998 999984 3 35532 233344445 4578 999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
..+|++++. .+++++++||+.++++... .+.... ........ +.+.+ +++..+
T Consensus 134 ~~~e~~~~~----~~i~~~~lrp~~~~~~~~~---------------~~~~~~-~~~~~~~~-~~~~~------~~~~~~ 186 (307)
T 2gas_A 134 ASIRRVIEA----EGVPYTYLCCHAFTGYFLR---------------NLAQLD-ATDPPRDK-VVILG------DGNVKG 186 (307)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEETTTTGG---------------GTTCTT-CSSCCSSE-EEEET------TSCSEE
T ss_pred HHHHHHHHH----cCCCeEEEEcceeeccccc---------------cccccc-cccCCCCe-EEEec------CCCcce
Confidence 999998875 6899999999998875311 000000 00011122 45555 788899
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecC-CCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGT-GKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
+++|++|+|++++.++..+... ++.|++.+ ++.+|+.|+++.+.+.+|.+.+....+
T Consensus 187 ~~i~~~Dva~~~~~~l~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 187 AYVTEADVGTFTIRAANDPNTL-NKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp EEECHHHHHHHHHHHHTCGGGT-TEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred EEeeHHHHHHHHHHHHcCcccc-CceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 9999999999999999865432 36777765 478999999999999999988765543
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=212.31 Aligned_cols=245 Identities=15% Similarity=0.173 Sum_probs=179.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|..... .+...++.. ..++.++.+|++|.+++.+++++
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 88 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG---QKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIA 88 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHH---HHHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999998753221 122222221 23789999999999999988753
Q ss_pred --CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||..... ....+....+++|+.++.++++++.. .+.+++|++||...|....
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 161 (278)
T 2bgk_A 89 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE------- 161 (278)
T ss_dssp HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT-------
T ss_pred HcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC-------
Confidence 3799999999975321 11234566889999999999988875 3567999999988875422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|...|.+++.++.+ .|++++++|||.++++....... .............+
T Consensus 162 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~------------~~~~~~~~~~~~~~-- 224 (278)
T 2bgk_A 162 ---GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFG------------VDSSRVEELAHQAA-- 224 (278)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSS------------CCHHHHHHHHHHTC--
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcc------------cchhHHHHhhhccc--
Confidence 13568999999999999998765 68999999999999986432110 01111222221111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHHHHHHHH
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKA 330 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~~~i~~~ 330 (393)
.....+++++|+|++++.++... ....++.|++.++..+++.|+++.+.+.
T Consensus 225 ------------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 225 ------------NLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp ------------SSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred ------------ccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhh
Confidence 11235889999999999998753 2234579999999999999999987653
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=212.09 Aligned_cols=246 Identities=14% Similarity=0.072 Sum_probs=175.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN---- 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---- 123 (393)
.+|+||||||+|+||++++++|+++|++|++++|....... ...+. ..++.++.+|+++.+++.+++++.
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD---LVAAY---PDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH---HHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 45899999999999999999999999999999885433222 22221 357899999999999999888542
Q ss_pred -CCcEEEEcccccCccC----CccChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 -AFDAVMHFAAVAYVGE----STLEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 -~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
++|+|||+||...... ...+....+++|+.+ ++.+++.+++.+.+++|++||...+.. ..
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~ 146 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS-----------FA 146 (281)
T ss_dssp SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC-----------CT
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCC-----------CC
Confidence 8999999999764422 233456688899999 666666667777789999999766532 33
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH--HHhCCCCceeE
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD--AARGIIPGLKI 269 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 269 (393)
+..+|+.+|...|.+.+.++.+ .|++++++|||.+.++........... . ...+...... ....
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~------- 215 (281)
T 3m1a_A 147 GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSE-E---NPAYAEKVGPTRQLVQ------- 215 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECC-B---CTTTHHHHHHHHHHHH-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCC-c---chhhHHHhHHHHHHHh-------
Confidence 5789999999999999998887 799999999999988753211000000 0 0011111111 1111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATG 332 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g 332 (393)
......+.+++|+|++++.+++.+... ..|+++++....+.+.+..+.+.++
T Consensus 216 ---------~~~~~~~~~~~dva~a~~~~~~~~~~~--~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 216 ---------GSDGSQPGDPAKAAAAIRLALDTEKTP--LRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp ---------C-----CBCHHHHHHHHHHHHHSSSCC--SEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hccCCCCCCHHHHHHHHHHHHhCCCCC--eEEecCchHHHHHHHHHHHHHHHHH
Confidence 112345788999999999999987654 5999998877777777777776654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=209.67 Aligned_cols=230 Identities=13% Similarity=0.106 Sum_probs=170.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|++++.++++.
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH---hCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4558999999999999999999999999999998854322222222222 235788999999999999988753
Q ss_pred -CCCcEEEEcccccCccC---CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE---STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+.. ..
T Consensus 86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~ 154 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK-----------NI 154 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC-----------CT
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCC-----------CC
Confidence 28999999999764421 233456788899999999888875 446789999999877643 22
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...|.+++.++.+ .+++++++|||.++++.... ...+.+........|
T Consensus 155 ~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~--------------~~~~~~~~~~~~~~~------ 214 (255)
T 1fmc_A 155 NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS--------------VITPEIEQKMLQHTP------ 214 (255)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--------------TCCHHHHHHHHHTCS------
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhh--------------ccChHHHHHHHhcCC------
Confidence 4678999999999999998766 48999999999999874211 112233333333333
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccH
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~ 320 (393)
...+++++|+|++++.++.... ...+++|+++++..+|+
T Consensus 215 ----------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 215 ----------IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp ----------SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred ----------cccCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 2347899999999999987532 22357999998887764
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=212.18 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=164.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--CCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--AFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d 126 (393)
||+||||||+|+||++++++|+++|++|++++|...... . .+.+|+.+.+++.+++++. ++|
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------------~---~~~~D~~~~~~~~~~~~~~~~~~d 64 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE-------------A---DLSTPGGRETAVAAVLDRCGGVLD 64 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------------C---CTTSHHHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc-------------c---cccCCcccHHHHHHHHHHcCCCcc
Confidence 579999999999999999999999999999998543221 0 1558999999999888542 899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCC-C-------CCCC---
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMP-I-------TEST--- 191 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~-~-------~E~~--- 191 (393)
+|||+||.... ..+....+++|+.++.++++++... +.+++|++||..+|+.....+ . +|+.
T Consensus 65 ~vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 65 GLVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp EEEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH
T ss_pred EEEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhh
Confidence 99999997642 3457889999999999999987654 567999999999986542111 1 1111
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC
Q 016208 192 ----PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII 264 (393)
Q Consensus 192 ----~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++|+. ...+........
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~-------------------~~~~~~~~~~~~ 202 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL-------------------LQASKADPRYGE 202 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHH-------------------HHHHHHCTTTHH
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchh-------------------hhhcccchhhHH
Confidence 1135678999999999999998876 69999999999999863 111111000000
Q ss_pred CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHH
Q 016208 265 PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKE 322 (393)
Q Consensus 265 ~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~e 322 (393)
. ... + .+ ..+++++++|+|++++.++..+. ...++.|+++++..++++|
T Consensus 203 ~-~~~------~-~~-~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 203 S-TRR------F-VA-PLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp H-HHS------C-CC-TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHCT
T ss_pred H-HHH------H-HH-HhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeeeec
Confidence 0 000 0 01 34578999999999999998652 2235799999887766543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=200.78 Aligned_cols=205 Identities=17% Similarity=0.180 Sum_probs=142.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
.++.||+||||||||+||++|+++|+++| ++|++++|....... + ...++.++.+|+.|++++.+++ .
T Consensus 19 ~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-------~--~~~~~~~~~~Dl~d~~~~~~~~--~ 87 (236)
T 3qvo_A 19 FQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-------P--YPTNSQIIMGDVLNHAALKQAM--Q 87 (236)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-------S--CCTTEEEEECCTTCHHHHHHHH--T
T ss_pred ecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-------c--ccCCcEEEEecCCCHHHHHHHh--c
Confidence 35668899999999999999999999999 899999985432221 1 1257899999999999999999 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCC--CCCCCCCCCCCChHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKM--PITESTPQKPINPYGK 201 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~p~~~Y~~ 201 (393)
++|+|||+|+.... ...+++++++|++.++++||++||.++|+..... +..|..+..+...|..
T Consensus 88 ~~D~vv~~a~~~~~--------------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (236)
T 3qvo_A 88 GQDIVYANLTGEDL--------------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRR 153 (236)
T ss_dssp TCSEEEEECCSTTH--------------HHHHHHHHHHHHHTTCCEEEEECCCCC----------------CGGGHHHHH
T ss_pred CCCEEEEcCCCCch--------------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccchHHHHHH
Confidence 89999999985321 1346789999999999999999999999865432 2333333334444544
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|+.+. ..|+++++|||+.++++.... + . ....+ ...
T Consensus 154 ----~~~~l~----~~gi~~~~vrPg~i~~~~~~~---------------~------------~-~~~~~-------~~~ 190 (236)
T 3qvo_A 154 ----AADAIE----ASGLEYTILRPAWLTDEDIID---------------Y------------E-LTSRN-------EPF 190 (236)
T ss_dssp ----HHHHHH----TSCSEEEEEEECEEECCSCCC---------------C------------E-EECTT-------SCC
T ss_pred ----HHHHHH----HCCCCEEEEeCCcccCCCCcc---------------e------------E-EeccC-------CCC
Confidence 454443 379999999999999874221 0 0 00000 111
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCc
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKG 317 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~ 317 (393)
...+++++|+|+++++++..+....+++|++++++.
T Consensus 191 ~~~~i~~~DvA~~i~~ll~~~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 191 KGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGT 226 (236)
T ss_dssp SCSEEEHHHHHHHHHHHHHSTTTTTTEEEEEECSSC
T ss_pred CCcEECHHHHHHHHHHHHcCcccccCeeEEecCCCC
Confidence 235899999999999999987644468999987753
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=201.05 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=164.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-C
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-A 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~ 124 (393)
.+.+|+|+||||+|+||++++++|+++|++|++++|.... ..+...+. .+++++.+|+.+.+++.++++.. +
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD---LVSLAKEC----PGIEPVCVDLGDWDATEKALGGIGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHhc----cCCCcEEecCCCHHHHHHHHHHcCC
Confidence 3556899999999999999999999999999999885322 11111221 36778899999999999998532 5
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+||...... ...+....+++|+.++.++++++... + .+++|++||...|... .+
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 145 (244)
T 1cyd_A 77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF-----------PN 145 (244)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-----------TT
T ss_pred CCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC-----------CC
Confidence 899999999764322 22345668889999999988887653 4 5799999998877532 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...|.+++.++.+ .+++++++||+.++++..... ...+.+...+..+.+
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~------- 205 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKV-------------SADPEFARKLKERHP------- 205 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHH-------------TCCHHHHHHHHHHST-------
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccc-------------ccCHHHHHHHHhcCC-------
Confidence 568999999999999998876 689999999999998741100 001222233322222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
.+++++++|+|++++.++..+. ...++.+++.++..
T Consensus 206 ---------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 206 ---------LRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYL 242 (244)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred ---------ccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCCcc
Confidence 3568999999999999997542 23457888876643
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=205.66 Aligned_cols=250 Identities=18% Similarity=0.128 Sum_probs=182.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++|+||||+|+||++++++|+++|++|++++|.........+.+.........+.++.+|++|++++.+++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999998854433333344433322223788999999999999888765
Q ss_pred --CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+||||||.... .....+....+++|+.++.++++++... +..++|++||...+...
T Consensus 88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 158 (281)
T 3svt_A 88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH--------- 158 (281)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC---------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC---------
Confidence 379999999997321 1123345668889999999998877543 44599999998877432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++..... ..............|
T Consensus 159 --~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~p--- 220 (281)
T 3svt_A 159 --RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAI-------------TESAELSSDYAMCTP--- 220 (281)
T ss_dssp --TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-------------HTCHHHHHHHHHHCS---
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhc-------------ccCHHHHHHHHhcCC---
Confidence 23679999999999999998876 469999999999988631100 000112222222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc-HHHHHHHHHHHhCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS-VKEFVEACKKATGVNI 335 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s-~~el~~~i~~~~g~~~ 335 (393)
...+.+++|+|+++++++.... ...+++|++.+|..++ ..++++.+.+.+|.+.
T Consensus 221 -------------~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 221 -------------LPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp -------------SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred -------------CCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 2346789999999999987532 2245899998887776 7788999998888654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=205.64 Aligned_cols=251 Identities=12% Similarity=0.048 Sum_probs=162.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+........++.++.+|+++++++.+++++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 83 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999998853222222222211022234688999999999999988853
Q ss_pred -CCCcEEEEcccccCccC--------CccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeeccee-ecCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE--------STLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCAT-YGEPDKMPIT 188 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~v-yg~~~~~~~~ 188 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... + +++|++||... +..
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 155 (278)
T 1spx_A 84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHA------- 155 (278)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSC-------
T ss_pred cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccC-------
Confidence 28999999999764321 23345668899999999998887653 5 79999999766 432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
..+...|+.+|...+.+.+.++.+ .|++++++|||.+.++.........+. . ..+... ........|
T Consensus 156 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~---~~~~~~-~~~~~~~~p 225 (278)
T 1spx_A 156 ----TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEET--S---KKFYST-MATMKECVP 225 (278)
T ss_dssp ----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC-------------------HHH-HHHHHHHCT
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchh--h---hhhhHH-HHHHHhcCC
Confidence 123568999999999999988765 689999999999998743210000000 0 000000 111111111
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-C-CCcceEEecCCCcccHHHHHHHHHHHh
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-P-GKVGIYNVGTGKGRSVKEFVEACKKAT 331 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~-~~~~~yni~~~~~~s~~el~~~i~~~~ 331 (393)
...+++++|+|+++++++..+. . ..+++|++.++..+++.++++.+.+.+
T Consensus 226 ----------------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 ----------------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ----------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred ----------------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 1247899999999999887432 1 235799999898999999999988653
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=208.60 Aligned_cols=247 Identities=13% Similarity=0.057 Sum_probs=176.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-- 123 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 123 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ..++.++.+|+++.+++.++++..
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999885432222222222211 246899999999999998887552
Q ss_pred ---CCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 124 ---AFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA-----HKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 124 ---~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
++|+|||+||..... ....+....+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 171 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS--------- 171 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC---------
Confidence 689999999975432 22344567889999999999887753 345799999998766432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...|.+.+.++.+ .|++++++|||.++++........ .. ..........|
T Consensus 172 --~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~----------~~--~~~~~~~~~~p--- 234 (302)
T 1w6u_A 172 --GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDP----------TG--TFEKEMIGRIP--- 234 (302)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCT----------TS--HHHHHHHTTCT---
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhccc----------ch--hhHHHHHhcCC---
Confidence 24678999999999999998877 789999999999998742111000 00 01122222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGV 333 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~ 333 (393)
...+++++|+|++++.++.... ...+++|++.++..+++.++++.+.+..|.
T Consensus 235 -------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 235 -------------CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp -------------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred -------------cCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhccc
Confidence 1247899999999999887532 223579999988888888888777765553
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=196.43 Aligned_cols=216 Identities=13% Similarity=0.093 Sum_probs=164.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||++++++|+++|++|++++|...... ...+.++.+|++|++++.+++++
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------------DPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------------STTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999998644322 24788999999999999988854
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+||||||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+... +.
T Consensus 94 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------~~ 164 (260)
T 3un1_A 94 FGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM---------VG 164 (260)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB---------TT
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC---------CC
Confidence 28999999999764332 23345667889999999998887 45667899999997654321 23
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+. |+++.+++||.|+++... . ..........|
T Consensus 165 ~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~---------------~---~~~~~~~~~~p----- 221 (260)
T 3un1_A 165 MPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHP---------------A---ETHSTLAGLHP----- 221 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSC---------------G---GGHHHHHTTST-----
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCC---------------H---HHHHHHhccCC-----
Confidence 356789999999999999998885 899999999999987422 1 11122222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|++++++.+.. ...|++|++.+|...
T Consensus 222 -----------~~r~~~~~dva~av~~L~~~~-~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 222 -----------VGRMGEIRDVVDAVLYLEHAG-FITGEILHVDGGQNA 257 (260)
T ss_dssp -----------TSSCBCHHHHHHHHHHHHHCT-TCCSCEEEESTTGGG
T ss_pred -----------CCCCcCHHHHHHHHHHhcccC-CCCCcEEEECCCeec
Confidence 345778999999999984433 334589999887654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=197.31 Aligned_cols=225 Identities=17% Similarity=0.133 Sum_probs=162.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-C
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-A 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~ 124 (393)
...+++|+||||+|+||++++++|+++|++|++++|.... ..+...++ .++.++.+|+++.+++.++++.. +
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD---LDSLVREC----PGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHc----CCCCEEEEeCCCHHHHHHHHHHcCC
Confidence 3456899999999999999999999999999999885321 11222222 35678899999999999998542 5
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+||...... ........+++|+.++.++++++... + .+++|++||...+.. ..+
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~~ 145 (244)
T 3d3w_A 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA-----------VTN 145 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC-----------CTT
T ss_pred CCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccC-----------CCC
Confidence 899999999764322 22345668899999998888877643 4 579999999876643 224
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...|.+++.++.+ .+++++++||+.++++.....+. .+..........|
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~~~------- 205 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-------------DPHKAKTMLNRIP------- 205 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSC-------------STTHHHHHHHTCT-------
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhcc-------------ChHHHHHHHhhCC-------
Confidence 678999999999999998876 58999999999999874210000 0011111222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+++++|+|++++.++.... ...++.|++.++..
T Consensus 206 ---------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 206 ---------LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---------CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 2458899999999999997542 22457999987754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=200.81 Aligned_cols=236 Identities=17% Similarity=0.097 Sum_probs=168.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN- 123 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 123 (393)
....+++||||||+|+||++++++|+++|++|++++|.... ..+...++ ...+.++.+|+++++++.+++++.
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIER---ARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999874322 22222232 246889999999999999888542
Q ss_pred ----CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCC
Q 016208 124 ----AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 124 ----~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
++|+||||||+..... ...+....+++|+.++.++++++... + ..++|++||...+...
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 149 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE-------- 149 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC--------
Confidence 8999999999864432 23345667889999999998887543 2 4589999997765332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC--
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP-- 265 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 265 (393)
.+...|+.+|...|.+.+.++.+ .|+++.+++||.++++... ....+.........
T Consensus 150 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~----------------~~~~~~~~~~~~~~~~ 210 (259)
T 4e6p_A 150 ---ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWD----------------GVDALFARYENRPRGE 210 (259)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHH----------------HHHHHHHHHHTCCTTH
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhh----------------hhhhhhhhhccCChHH
Confidence 23578999999999999998876 4899999999999987421 11111222111110
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
.....+ ++.....+.+++|+|+++++++... ....+++|++.+|..+|
T Consensus 211 ~~~~~~------~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 211 KKRLVG------EAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp HHHHHH------HHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHHHh------ccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 001111 2234567899999999999988643 22345899998876543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=199.94 Aligned_cols=241 Identities=13% Similarity=0.097 Sum_probs=165.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ..++.++.+|+++++++.+++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF--GVRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885432222222222110 24688999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 151 (263)
T 3ai3_A 82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL---------- 151 (263)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC----------
Confidence 28999999999764322 233456688899999988887764 4467799999998877432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC-CCcee
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI-IPGLK 268 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|++++++|||.++++........... . .+............. .|
T Consensus 152 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~p--- 223 (263)
T 3ai3_A 152 -WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTK--D--NGGDWKGYLQSVADEHAP--- 223 (263)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTT--T--TTCCHHHHHHHHHHHHCT---
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhc--c--cCCcHHHHHHHHHhcCCC---
Confidence 23568999999999999998876 689999999999998731100000000 0 000001111111111 11
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
...+++++|+|+++++++..+. ...+++|++.++..++
T Consensus 224 -------------~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 224 -------------IKRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp -------------TCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred -------------CCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 2357899999999999887542 2245799998876654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=201.03 Aligned_cols=236 Identities=15% Similarity=0.073 Sum_probs=160.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhc----CCCCccEEEEccCCCHHHHHHHHh
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELF----PQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ....++.++.+|++|.+++.++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 3556899999999999999999999999999999885432222222111110 001468899999999999888875
Q ss_pred h-----CCC-cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCC
Q 016208 122 E-----NAF-DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 122 ~-----~~~-d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~ 186 (393)
. .++ |+|||+||...... ...+....+++|+.++.++++++... + .+++|++||...+...
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 159 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN---- 159 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC----
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC----
Confidence 4 244 99999999764321 23455678899999999999887653 4 5699999997654321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
.+...|+.+|...|.+.+.++.+ .|++++++|||.++++... .+...+.......
T Consensus 160 -------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~ 217 (264)
T 2pd6_A 160 -------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ---------------KVPQKVVDKITEM 217 (264)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------------------CTGGG
T ss_pred -------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchh---------------hcCHHHHHHHHHh
Confidence 23578999999999999988776 7899999999999998532 1111111111111
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHH
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEF 323 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el 323 (393)
. ....+++++|+|++++.++... ....++.+++.++..++...+
T Consensus 218 ~----------------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 218 I----------------PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp C----------------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred C----------------CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 1 1234789999999999998753 223457999988876654443
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=201.10 Aligned_cols=238 Identities=16% Similarity=0.054 Sum_probs=163.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+|+|+||||+|+||++++++|+++|++|++++|.... ...+...++.....++.++.+|++|++++.+++++
T Consensus 18 ~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK--AAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchH--HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999883221 11111122211235788999999999999888753
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceee-cCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATY-GEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vy-g~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... ....+....+++|+.++.++++++... + +++|++||...+ ...
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~---------- 164 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGI---------- 164 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSC----------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCC----------
Confidence 2899999999976432 123344668899999999999988765 4 699999998776 321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...|.+++.++.+ .+++++++|||.++++......... .+.. ..+............
T Consensus 165 -~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~------- 234 (274)
T 1ja9_A 165 -PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHY-APGG-YKGMPQEKIDEGLAN------- 234 (274)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGT-STTC-CTTCCHHHHHHHHHH-------
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccc-cccc-cccCchHHHHHHHHh-------
Confidence 23568999999999999998876 4899999999999876311000000 0000 000000111111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
+.....+++++|+|++++.++..+.. ..+++|++++|
T Consensus 235 ---------~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 235 ---------MNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp ---------TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---------cCCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 12235689999999999999875422 23579999766
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=192.16 Aligned_cols=202 Identities=14% Similarity=0.140 Sum_probs=147.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHH-HCCCeEEEEeCCCC-CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSR-GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|++|+||||||+||++++++|+ ++|++|++++|... ... .+. ....++.++.+|+.|.+++.+++ .++|
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~----~~~---~~~~~~~~~~~D~~d~~~~~~~~--~~~d 75 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIP----PEI---IDHERVTVIEGSFQNPGXLEQAV--TNAE 75 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSC----HHH---HTSTTEEEEECCTTCHHHHHHHH--TTCS
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccch----hhc---cCCCceEEEECCCCCHHHHHHHH--cCCC
Confidence 3569999999999999999999 89999999988532 211 110 01368899999999999999999 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC-hHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN-PYGKAKKM 205 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~-~Y~~sK~~ 205 (393)
+|||+||.. |+. +++++++|++.+++++|++||..+|+..+. ...+... .... +|+.+|..
T Consensus 76 ~vv~~ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~-~~~~~~~-~~~~~~y~~~K~~ 137 (221)
T 3r6d_A 76 VVFVGAMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPV-ALEKWTF-DNLPISYVQGERQ 137 (221)
T ss_dssp EEEESCCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCH-HHHHHHH-HTSCHHHHHHHHH
T ss_pred EEEEcCCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCc-ccccccc-cccccHHHHHHHH
Confidence 999999853 344 899999999999999999999988865332 1100000 1123 89999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
.|.+++. .++++++|||+.++++..... ...... .......+
T Consensus 138 ~e~~~~~----~~i~~~~vrpg~v~~~~~~~~-----------------------------~~~~~~-----~~~~~~~~ 179 (221)
T 3r6d_A 138 ARNVLRE----SNLNYTILRLTWLYNDPEXTD-----------------------------YELIPE-----GAQFNDAQ 179 (221)
T ss_dssp HHHHHHH----SCSEEEEEEECEEECCTTCCC-----------------------------CEEECT-----TSCCCCCE
T ss_pred HHHHHHh----CCCCEEEEechhhcCCCCCcc-----------------------------eeeccC-----CccCCCce
Confidence 9998876 799999999999998732110 111000 01111238
Q ss_pred ccHHHHHHHHHHHH--hcCCCCCcceEEecCC
Q 016208 286 IDVTDLVDAHVLAL--ANAKPGKVGIYNVGTG 315 (393)
Q Consensus 286 i~v~Dva~a~~~~l--~~~~~~~~~~yni~~~ 315 (393)
++.+|+|+++++++ ..+....++.+.++++
T Consensus 180 ~~~~dvA~~~~~l~~~~~~~~~~~~~~~i~~~ 211 (221)
T 3r6d_A 180 VSREAVVKAIFDILHAADETPFHRTSIGVGEP 211 (221)
T ss_dssp EEHHHHHHHHHHHHTCSCCGGGTTEEEEEECT
T ss_pred eeHHHHHHHHHHHHHhcChhhhhcceeeecCC
Confidence 99999999999999 6654333467777654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=200.18 Aligned_cols=227 Identities=10% Similarity=-0.020 Sum_probs=151.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|+.+.+++.++++.
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998854322222222222 234688999999999999888764
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++ ++.+.+++|++||...+...
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 158 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA---------- 158 (266)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC----------
Confidence 57999999999764321 23345668899999999999888 45567899999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...|.+++.++.+ .|++++++|||.++++..... ....+........
T Consensus 159 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~~~~~~~~~~~~~----- 218 (266)
T 1xq1_A 159 -SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV--------------YDDEFKKVVISRK----- 218 (266)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---------------------------------------
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh--------------cCHHHHHHHHhcC-----
Confidence 23679999999999999988776 489999999999999853210 0011111111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
....+++++|+|+++++++... ....+++|++.++..
T Consensus 219 -----------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 219 -----------PLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLT 256 (266)
T ss_dssp ----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred -----------CCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCCcc
Confidence 1224788999999999988743 222457999987754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=194.82 Aligned_cols=229 Identities=14% Similarity=0.078 Sum_probs=165.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.++. ...++.++.+|++|.+++.+++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM---EGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999998854322222222222 135789999999999999888753
Q ss_pred -CCCcEEEEcccccC-ccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAY-VGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~-~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||... ... ...+....+++|+.++.++++++.. .+.+++|++||...+... +
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------~ 158 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN---------R 158 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------S
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC---------C
Confidence 37999999999754 211 2223466889999999999888764 456799999997655321 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..|...|+.+|...|.+++.++.+ .|++++++|||.++++..... ...+.+...+....|
T Consensus 159 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 221 (260)
T 3awd_A 159 PQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFG-------------MEKPELYDAWIAGTP---- 221 (260)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHH-------------HTCHHHHHHHHHTCT----
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcc-------------cCChHHHHHHHhcCC----
Confidence 224578999999999999998877 789999999999999852100 011122233332222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+++++|+|++++.++... ....+++|++.++.
T Consensus 222 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 222 ------------MGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ------------cCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 234789999999999998753 22345799998764
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-25 Score=196.58 Aligned_cols=226 Identities=14% Similarity=0.109 Sum_probs=161.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ..++.++.+|+.|++++.+++++
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY--GVKAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885332222222222111 24688999999999999988853
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... ....+....+++|+.++.+++++ +++.+.+++|++||...+...
T Consensus 82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 151 (248)
T 2pnf_A 82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN---------- 151 (248)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC----------
Confidence 2899999999976432 12334567889999999666554 445677899999997654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...|.+.+.++.+ .+++++++||+.++++... .+............|
T Consensus 152 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~---- 211 (248)
T 2pnf_A 152 -VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTA---------------VLSEEIKQKYKEQIP---- 211 (248)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG---------------GSCHHHHHHHHHTCT----
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhh---------------hccHHHHHHHHhcCC----
Confidence 13568999999999999988765 4899999999999987421 111222222222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+++++|+|++++.++... ....+++|++.++
T Consensus 212 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 212 ------------LGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------------CCCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 234789999999999998753 2233579999765
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=193.76 Aligned_cols=224 Identities=16% Similarity=0.132 Sum_probs=166.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++++||||+|+||++++++|+++|++|+++++.... ...+...++.....++.++.+|++|.+++.+++++ .
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKE--KAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999999999998774322 11122222222245788999999999999888854 2
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||...... ...+....+++|+.++.++++++ ++.+..++|++||...+... .+
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 150 (246)
T 3osu_A 82 SLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN-----------PG 150 (246)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----------TT
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-----------CC
Confidence 8999999999764332 23345668899999999999988 55566799999997765332 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++.+++||.+.++... .+.+..........|
T Consensus 151 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p------- 208 (246)
T 3osu_A 151 QANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTD---------------ALSDELKEQMLTQIP------- 208 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCS---------------CSCHHHHHHHHTTCT-------
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccc---------------ccCHHHHHHHHhcCC-------
Confidence 678999999999999988874 6899999999999987532 233444444444433
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...+++|++.+|.
T Consensus 209 ---------~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 209 ---------LARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp ---------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred ---------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 2346789999999999887542 2345899997764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-24 Score=193.31 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=169.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++++||||+|+||++++++|+++|++|++++|......... .++ ..++.++.+|++|.+++.++++.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA---ASV---GRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHH---HHH---CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH---HHh---CCCeEEEECCCCCHHHHHHHHHHHH
Confidence 3456689999999999999999999999999999998654333222 222 35788999999999999988854
Q ss_pred ---CCCcEEEEcccccCc------cCCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV------GESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||.... .....+....+++|+.++.++++++ ++.+..++|++||...+..
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------- 152 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAA-------- 152 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSB--------
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCC--------
Confidence 289999999997633 1123445678899999999999888 5666779999999876633
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|+++.... .+............+
T Consensus 153 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--------------~~~~~~~~~~~~~~~- 214 (271)
T 3tzq_B 153 ---YDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEV--------------GLPQPIVDIFATHHL- 214 (271)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-----------------CHHHHHHHHTTST-
T ss_pred ---CCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccc--------------cCCHHHHHHHHhcCC-
Confidence 224678999999999999998887 78999999999999985321 112223333333332
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+.+++|+|+++++++... ....|+++++.+|
T Consensus 215 ---------------~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 215 ---------------AGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp ---------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---------------CCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 123678999999999998754 2334589999777
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=193.45 Aligned_cols=225 Identities=11% Similarity=0.040 Sum_probs=160.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++++||||+|+||++++++|+++|++|++++|.........+.+ ...+.++.+|++|.+++.+++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL------GAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh------CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999998665443322222 25788999999999999888754
Q ss_pred --CCCcEEEEcccccCccC--------CccChHHHHHHHHHHHHHHHHHHHhc----------CCcEEEEeecceeecCC
Q 016208 123 --NAFDAVMHFAAVAYVGE--------STLEPLRYYHNITSNTLVILEAMAAH----------KVKTLIYSSTCATYGEP 182 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~~V~~SS~~vyg~~ 182 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... +..++|++||...+...
T Consensus 78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tpc_A 78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ 157 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC
T ss_pred HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC
Confidence 28999999999764321 23455678899999999999988753 34689999998776432
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH
Q 016208 183 DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA 259 (393)
Q Consensus 183 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
. +...|+.+|...+.+.+.++.+ .|+++.+++||.|.++... .+.......
T Consensus 158 ~-----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~~ 211 (257)
T 3tpc_A 158 I-----------GQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMA---------------GMPQDVQDA 211 (257)
T ss_dssp T-----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC---------------------------
T ss_pred C-----------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhc---------------cCCHHHHHH
Confidence 2 3678999999999999888877 7899999999999887422 111111111
Q ss_pred HhCCCCceeEcCccccCCCCccc-cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCccc
Q 016208 260 ARGIIPGLKIRGTDYNTADGTCV-RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~g~~~-~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s 319 (393)
.....| . ..+.+++|+|++++++++.. ...|+++++.+|..++
T Consensus 212 ~~~~~p----------------~~~r~~~~~dva~~v~~l~s~~-~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 212 LAASVP----------------FPPRLGRAEEYAALVKHICENT-MLNGEVIRLDGALRMA 255 (257)
T ss_dssp --CCSS----------------SSCSCBCHHHHHHHHHHHHHCT-TCCSCEEEESTTCCC-
T ss_pred HHhcCC----------------CCCCCCCHHHHHHHHHHHcccC-CcCCcEEEECCCccCC
Confidence 111111 1 34789999999999999863 3346899998776543
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=193.82 Aligned_cols=213 Identities=16% Similarity=0.119 Sum_probs=162.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN----A 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----~ 124 (393)
+|+|+||||+|+||++++++|+++|++|++++|... . ..+.++.+|+++.+++.+++++. +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------------EDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------------SSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------------cceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 378999999999999999999999999999998543 1 35688999999999999888532 8
Q ss_pred CcEEEEcccccCccCCc----c----ChHHHHHHHHHHHHHHHHHHHhcC----------CcEEEEeecceeecCCCCCC
Q 016208 125 FDAVMHFAAVAYVGEST----L----EPLRYYHNITSNTLVILEAMAAHK----------VKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~----~----~~~~~~~~n~~~~~~ll~~~~~~~----------~~~~V~~SS~~vyg~~~~~~ 186 (393)
+|+|||+||........ . +....+++|+.++.++++++...- ..++|++||...+...
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 142 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ---- 142 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC----
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 99999999976433211 1 556788999999999999887541 1289999998877542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
.+...|+.+|...|.+.+.++.+ .|++++++|||.++++... .+...+.......
T Consensus 143 -------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~ 200 (242)
T 1uay_A 143 -------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ---------------GLPEKAKASLAAQ 200 (242)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH---------------TSCHHHHHHHHTT
T ss_pred -------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhh---------------ccchhHHHHHHhh
Confidence 23678999999999999888766 4899999999999987421 1122223333333
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
.+ + ...+++++|+|++++.++... ...++.|++.++..+
T Consensus 201 ~~-~--------------~~~~~~~~dva~~~~~l~~~~-~~~G~~~~v~gG~~~ 239 (242)
T 1uay_A 201 VP-F--------------PPRLGRPEEYAALVLHILENP-MLNGEVVRLDGALRM 239 (242)
T ss_dssp CC-S--------------SCSCCCHHHHHHHHHHHHHCT-TCCSCEEEESTTCCC
T ss_pred CC-C--------------cccCCCHHHHHHHHHHHhcCC-CCCCcEEEEcCCeec
Confidence 32 1 023789999999999999873 334579999877654
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=194.40 Aligned_cols=224 Identities=11% Similarity=0.069 Sum_probs=152.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEe-CCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++ |.........+.+.. ...++.++.+|++|++++.+++++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA---AGINVVVAKGDVKNPEDVENMVKTAMD 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH---TTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999984 432222222222222 135788999999999999888754
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeeccee-ecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCAT-YGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~v-yg~~~~~~~~E~~ 191 (393)
.++|+|||+||..... ....+....+++|+.++.++++++.. .+.+++|++||... |+.
T Consensus 80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 149 (247)
T 2hq1_A 80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN---------- 149 (247)
T ss_dssp HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC----------
Confidence 2899999999976432 13345677899999998888777653 46779999999744 432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...|.+.+.++.+ .++++++++||.+.++... .+............|
T Consensus 150 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~--- 209 (247)
T 2hq1_A 150 --AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTD---------------VLPDKVKEMYLNNIP--- 209 (247)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHTTST---
T ss_pred --CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchh---------------hcchHHHHHHHhhCC---
Confidence 13578999999999999988776 4899999999998765211 111222222222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+++++|+|++++.++..+. ...+++|+++++.
T Consensus 210 -------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 210 -------------LKRFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred -------------CCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 2347899999999999887532 2245799998764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=194.86 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=170.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++++||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|.+++.+++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ---AGGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 345668999999999999999999999999999998854333333333332 246789999999999998888754
Q ss_pred ---CCCcEEEEcccccCccC---CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE---STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++. +.+..++|++||...+..
T Consensus 85 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 153 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENT----------- 153 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCC-----------
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCC-----------
Confidence 38999999999765422 234456688999999999988874 455679999999776532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.+..+.... ...+..........|
T Consensus 154 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~~~p---- 215 (256)
T 3gaf_A 154 NVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALAT--------------VLTPEIERAMLKHTP---- 215 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHH--------------HCCHHHHHHHHTTCT----
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhh--------------ccCHHHHHHHHhcCC----
Confidence 223678999999999999988876 58999999999998752110 011222333333322
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccH
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~ 320 (393)
...+.+++|+|+++++++... ....|+++++.+|...++
T Consensus 216 ------------~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 216 ------------LGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred ------------CCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 234789999999999998743 223458999988876554
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=191.14 Aligned_cols=189 Identities=11% Similarity=0.027 Sum_probs=147.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-CCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-AFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~ 127 (393)
+|+|+||||+|+||++++++|+ +|++|++++|... .+.+|+.+++++.+++++. ++|+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d~ 61 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVDA 61 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCCE
Confidence 4689999999999999999999 9999999988431 3679999999999988542 5999
Q ss_pred EEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 128 VMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 128 Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
|||+||....... .......+++|+.++.++++++... + +++|++||...+.. ..+...|+
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~-----------~~~~~~Y~ 129 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDP-----------IVQGASAA 129 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSC-----------CTTCHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCC-----------CCccHHHH
Confidence 9999997643322 2233567789999999999999876 4 68999999766532 23467899
Q ss_pred HHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCC
Q 016208 201 KAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD 278 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 278 (393)
.+|...|.+++.++.+ .|++++++||+.++++.. ... +
T Consensus 130 ~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~------------------------~~~----------------~ 169 (202)
T 3d7l_A 130 MANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD------------------------KLE----------------P 169 (202)
T ss_dssp HHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH------------------------HHG----------------G
T ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh------------------------hhh----------------h
Confidence 9999999999998876 489999999999998620 000 1
Q ss_pred CccccccccHHHHHHHHHHHHhcCCCCCcceEEe
Q 016208 279 GTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNV 312 (393)
Q Consensus 279 g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni 312 (393)
....+++++++|+|++++.++..... +++||+
T Consensus 170 ~~~~~~~~~~~dva~~~~~~~~~~~~--G~~~~v 201 (202)
T 3d7l_A 170 FFEGFLPVPAAKVARAFEKSVFGAQT--GESYQV 201 (202)
T ss_dssp GSTTCCCBCHHHHHHHHHHHHHSCCC--SCEEEE
T ss_pred hccccCCCCHHHHHHHHHHhhhcccc--CceEec
Confidence 11235689999999999988854333 368887
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=192.16 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=161.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhh-cCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQEL-FPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
+++|+||||+|+||++++++|+++|++|++++|...... +...++ .....++.++.+|+++++++.+++++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLE---ETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQF 78 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999988542222 212222 11124688999999999999988753
Q ss_pred CCCcEEEEcccccCccC-------CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE-------STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~-------~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||...... ...+....+++|+.++.++++.+ ++.+.+++|++||...+...
T Consensus 79 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 149 (250)
T 2cfc_A 79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF--------- 149 (250)
T ss_dssp SCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred CCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC---------
Confidence 28999999999764321 22345668889999987666555 44567899999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccccc-hHHHHHHHhCCCCce
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRI-SGACFDAARGIIPGL 267 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|...|.+++.++.+. |++++++||+.++++.... .+ .+.+...+....|
T Consensus 150 --~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~--------------~~~~~~~~~~~~~~~~-- 211 (250)
T 2cfc_A 150 --PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQW--------------RLDQPELRDQVLARIP-- 211 (250)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHH--------------HHTSHHHHHHHHTTCT--
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCcccc--------------ccCCHHHHHHHHhcCC--
Confidence 236789999999999999987763 8999999999999985220 01 0122233333322
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|++++.++..+. ...++.+++.++.
T Consensus 212 --------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 212 --------------QKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp --------------TCSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred --------------CCCCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 2347899999999999987543 2235799997664
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=196.19 Aligned_cols=231 Identities=16% Similarity=0.088 Sum_probs=169.4
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++||||||+|+||.+++++|+++|++|++++|.........+.+.... ..++.++.+|++|.+++.+++++
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG--AGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS--SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC--CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999886544333333332211 14788999999999998887754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+..
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~---------- 184 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT---------- 184 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC----------
Confidence 38999999999764432 23345668899999999998887 3556679999999654210
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.|+++... ..............|
T Consensus 185 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p--- 246 (293)
T 3rih_A 185 GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLV---------------DMGEEYISGMARSIP--- 246 (293)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHH---------------HTCHHHHHHHHTTST---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchh---------------hccHHHHHHHHhcCC---
Confidence 1223678999999999999988876 5899999999999986321 122333344444333
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+..++|+|+++++++... ....|+++++.+|..+
T Consensus 247 -------------~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 247 -------------MGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -------------CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 123567899999999988743 2234589999877543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=193.23 Aligned_cols=231 Identities=14% Similarity=0.081 Sum_probs=168.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++++||||+|+||++++++|+++|++|++++|.........+.+... ...++.++.+|+++++++.+++++
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL--GSGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--SSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh--CCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4456689999999999999999999999999999988543333333333221 114788999999999999888754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+||||||+..... ...+....+++|+.++.++++++... +..++|++||...+. .
T Consensus 84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------~ 153 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI----------T 153 (262)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT----------B
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc----------C
Confidence 38999999999764332 23344567889999999988877654 667999999965421 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.|+++... ..............|
T Consensus 154 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p--- 215 (262)
T 3pk0_A 154 GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLL---------------ENGEEYIASMARSIP--- 215 (262)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHH---------------TTCHHHHHHHHTTST---
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccc---------------ccCHHHHHHHHhcCC---
Confidence 1224678999999999999998887 6899999999999986321 111223333333333
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++... ....|+++++.+|..+
T Consensus 216 -------------~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 216 -------------AGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 123678999999999988753 2234589999877543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=196.93 Aligned_cols=226 Identities=13% Similarity=0.104 Sum_probs=163.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC-CCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+.+|+|+||||+|+||++++++|+++|++|++++|. ........+.+.. ...++.++.+|+++++++.+++++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA---DGGDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999986 3332222222322 135788999999999999988853
Q ss_pred --CCCcEEEEcccc-cCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC--C---cEEEEeecceeecCCCCCC
Q 016208 123 --NAFDAVMHFAAV-AYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK--V---KTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 123 --~~~d~Vi~~A~~-~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~---~~~V~~SS~~vyg~~~~~~ 186 (393)
.++|+|||+||. ..... ........+++|+.++.++++++.. .+ . .++|++||...+..
T Consensus 82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 156 (258)
T 3afn_B 82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG----- 156 (258)
T ss_dssp HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC-----
T ss_pred HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC-----
Confidence 289999999997 32211 1223556788999999988886642 22 2 68999999776641
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++... .+.+.+...+...
T Consensus 157 -----~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~ 216 (258)
T 3afn_B 157 -----GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHA---------------DKTQDVRDRISNG 216 (258)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGT---------------TCCHHHHHHHHTT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccc---------------ccCHHHHHHHhcc
Confidence 1224678999999999999988766 4899999999999987532 1122333333333
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC--CCCcceEEecCCC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK--PGKVGIYNVGTGK 316 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~yni~~~~ 316 (393)
.| ...+++++|+|++++.++.... ...+++|++.++.
T Consensus 217 ~~----------------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 217 IP----------------MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp CT----------------TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred CC----------------CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 32 2358899999999999887532 2235799997764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=190.04 Aligned_cols=227 Identities=14% Similarity=0.056 Sum_probs=168.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+|+|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|.+++.+++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE---KGFKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999998854333333333322 235789999999999999988765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||+..... ...+....+++|+.++.++++.+.. .+..++|++||...+...
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (247)
T 3lyl_A 80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN----------- 148 (247)
T ss_dssp TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC-----------
Confidence 26999999999864422 3344566889999999998887653 455699999997766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+... .+............|
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~----- 208 (247)
T 3lyl_A 149 PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTD---------------KLTDEQKSFIATKIP----- 208 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT---------------TSCHHHHHHHHTTST-----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccch---------------hccHHHHHHHhhcCC-----
Confidence 23678999999999999888776 5899999999999877432 222333333333322
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++.... ...|++|++.+|..+
T Consensus 209 -----------~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 209 -----------SGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp -----------TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred -----------CCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCCEec
Confidence 3457899999999999887532 234689999877543
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=195.75 Aligned_cols=234 Identities=13% Similarity=0.126 Sum_probs=167.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ..++.++.+|+.|.+++.+++++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc--CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999985544332222222211 24788999999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... + .+++|++||...+..... +..+
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~~~ 165 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SLNG 165 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ETTE
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----cccc
Confidence 35999999999764322 23345567899999999999887543 3 378999999876543211 1123
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..|...|+.+|...|.+++.++.+ .|++++++|||.++++... .+.+..........+
T Consensus 166 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~---- 226 (265)
T 1h5q_A 166 SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA---------------HMDKKIRDHQASNIP---- 226 (265)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG---------------GSCHHHHHHHHHTCT----
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccc---------------ccchhHHHHHHhcCc----
Confidence 445788999999999999988776 4899999999999987421 111222222222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+++++|+|++++.++..+. ...++.|++.++..
T Consensus 227 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 227 ------------LNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp ------------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred ------------ccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCCEe
Confidence 1237889999999999987532 23457999987753
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=194.79 Aligned_cols=223 Identities=14% Similarity=0.103 Sum_probs=157.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEE-EEccCCCHHHHHHHHhh----
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQF-IYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~~---- 122 (393)
|++|+||||+|+||++++++|+++|++|+++ +|.........+.+.. ...++.. +.+|+++.+++.+++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARR---RGSPLVAVLGANLLEAEAATALVHQAAEV 77 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHH---TTCSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCceEEEEeccCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999998 6643222222222222 1245666 89999999998888653
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHH----HHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTL----VILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~----~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||..... ....+....+++|+.++. .+++.+++.+.+++|++||...+...
T Consensus 78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 146 (245)
T 2ph3_A 78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN----------- 146 (245)
T ss_dssp HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC-----------
Confidence 4899999999976432 123345668889999944 45555556677899999997654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+.+.++.+ .|++++++||+.++++... .+............+
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~----- 206 (245)
T 2ph3_A 147 PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTE---------------RLPQEVKEAYLKQIP----- 206 (245)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHHTCT-----
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchh---------------hcCHHHHHHHHhcCC-----
Confidence 13568999999999999888776 4899999999999886321 111122222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+++++|+|++++.++..+. ...++.|++.++.
T Consensus 207 -----------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 207 -----------AGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp -----------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred -----------CCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 2347899999999999987532 2235799997663
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=191.64 Aligned_cols=227 Identities=15% Similarity=0.097 Sum_probs=160.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCcc-EEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQL-QFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~-- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|...... +...++ ..++ .++.+|+++.+++.++++.
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALD---RAAQEL---GAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHH---GGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---cccceeEEEEecCCHHHHHHHHHHHH
Confidence 345689999999999999999999999999999988532211 112222 1355 8899999999999888754
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||....... .......+++|+.++.++++++ ++.+.+++|++||...+... +
T Consensus 82 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------~ 152 (254)
T 2wsb_A 82 AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN---------R 152 (254)
T ss_dssp HHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------S
T ss_pred hhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC---------C
Confidence 489999999997654322 2234567889999977666654 45567899999998776432 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..|...|+.+|...|.+++.++.+ .|++++++|||.++++..... ...+..........|
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~~---- 215 (254)
T 2wsb_A 153 PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-------------RERPELFETWLDMTP---- 215 (254)
T ss_dssp SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-------------HTCHHHHHHHHHTST----
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-------------ccChHHHHHHHhcCC----
Confidence 224578999999999999988776 389999999999998631100 000112222222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+++++|+|++++.++... ....+++|++.++.
T Consensus 216 ------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 216 ------------MGRCGEPSEIAAAALFLASPAASYVTGAILAVDGGY 251 (254)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ------------CCCCCCHHHHHHHHHHHhCcccccccCCEEEECCCE
Confidence 234789999999999998753 22345799997663
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-24 Score=194.00 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=169.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC---------CchhhhhhhhhcCCCCccEEEEccCCCHHH
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---------NMGAVKVLQELFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 115 (393)
....+++++||||+|+||++++++|+++|++|++++|.... .....+....+.....++.++.+|++|.++
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 34566899999999999999999999999999999985322 112222222222224678899999999999
Q ss_pred HHHHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCC
Q 016208 116 VNKIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEP 182 (393)
Q Consensus 116 ~~~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~ 182 (393)
+.+++++ .++|+|||+||+..... ...+....+++|+.++.++++++ .+.+..++|++||...+...
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 165 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSAN 165 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCC
Confidence 9888764 38999999999765322 23345668889999999998885 34566799999998766332
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCC-CCCcccccccchHHHHH
Q 016208 183 DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEA-PHPELREHGRISGACFD 258 (393)
Q Consensus 183 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 258 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|+++.....+... ..+.. ..........
T Consensus 166 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~ 232 (281)
T 3s55_A 166 -----------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDL--EKPTLKDVES 232 (281)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC---------CCHHHHHH
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccc--cccchhHHHH
Confidence 23678999999999999998886 5899999999999998532100000 00000 0000000000
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
.... .......+.+++|+|+++++++.... ...|++|++.+|...+
T Consensus 233 ~~~~---------------~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 233 VFAS---------------LHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHH---------------HCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred HHHh---------------hhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 0000 01122568899999999999988543 2345899998876554
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=189.68 Aligned_cols=232 Identities=12% Similarity=0.000 Sum_probs=163.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|+++++++.++++.
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998854322222222222 235788999999999999888764
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||+.... ....+....+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 152 (260)
T 2ae2_A 84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA----------- 152 (260)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC-----------
T ss_pred cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC-----------
Confidence 4799999999976432 1233456688899999999988874 456679999999776532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++....... . ...... +.......|
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~------~~~~~~-~~~~~~~~~---- 218 (260)
T 2ae2_A 153 VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQ---D------PEQKEN-LNKLIDRCA---- 218 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTT---S------HHHHHH-HHHHHHTST----
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhcc---C------hhhHHH-HHHHHhcCC----
Confidence 123578999999999999998876 38999999999998752100000 0 000000 001111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+++++|+|+++++++.... ...++++++.++..+
T Consensus 219 ------------~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 219 ------------LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp ------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ------------CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 2347899999999999887532 234579999877543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-24 Score=192.10 Aligned_cols=226 Identities=10% Similarity=0.025 Sum_probs=161.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC-CCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++| .........+.+.. ...++.++.+|+++.+++.+++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999988 32211112222222 235688999999999998888754
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||..... ....+....+++|+.++.++++++.. .+ .+++|++||...+.
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 150 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI----------- 150 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-----------
Confidence 2899999999976432 12334566889999999888777653 34 56999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccc--hHHHHHHHhCCCCc
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRI--SGACFDAARGIIPG 266 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 266 (393)
+..+...|+.+|...|.+.+.++.+ .|++++++|||.++++... .. .+..........|
T Consensus 151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~~- 214 (261)
T 1gee_A 151 PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA---------------EKFADPEQRADVESMIP- 214 (261)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH---------------HHHHSHHHHHHHHTTCT-
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhh---------------hcccChhHHHHHHhcCC-
Confidence 2335679999999999998887765 4899999999999987311 11 0111222222222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
...+++++|+|++++.++... ....++++++.++..
T Consensus 215 ---------------~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 215 ---------------MGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp ---------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---------------CCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCcc
Confidence 234789999999999988743 222457999987754
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=188.55 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=160.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN- 123 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 123 (393)
.....++||||||+|+||++++++|+++|++|++++|..... .+...++ ...+.++.+|+++.+++.+++++.
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKL---KSLGNAL---KDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHH---CSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHh---ccCccEEEcCCCCHHHHHHHHHhcC
Confidence 445668999999999999999999999999999998843222 2222222 247889999999999999998653
Q ss_pred CCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||..... ....+....+++|+.++.++++++. +.+..++|++||...+... .+
T Consensus 84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 152 (249)
T 3f9i_A 84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN-----------PG 152 (249)
T ss_dssp CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC-----------SC
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC-----------CC
Confidence 799999999976432 2345677899999999999887764 3456799999998776432 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++.+++||.|.++... .+............+
T Consensus 153 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~------- 210 (249)
T 3f9i_A 153 QANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD---------------KLNEKQREAIVQKIP------- 210 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC---------------------CCHHHHHHHHHHCT-------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccc---------------ccCHHHHHHHHhcCC-------
Confidence 678999999999999888776 5899999999999886422 222222233222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+.+++|+|+++++++.... ...|++|++.+|..
T Consensus 211 ---------~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 211 ---------LGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGML 247 (249)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ---------CCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCEe
Confidence 3457889999999999987543 23458999987643
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=192.40 Aligned_cols=230 Identities=16% Similarity=0.093 Sum_probs=163.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--- 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--- 123 (393)
..|++|+||||+|+||++++++|+++|++|++++|........... .+.....++.++.+|+++.+++.+++++.
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKE--TYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH--HTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH--HHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999987754322211111 11111357899999999999999888642
Q ss_pred --CCcEEEEccccc--Ccc----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 124 --AFDAVMHFAAVA--YVG----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 124 --~~d~Vi~~A~~~--~~~----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
++|+|||+||+. ... ....+....+++|+.++.++++++ ++.+..++|++||...++..
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~--------- 153 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP--------- 153 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC---------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC---------
Confidence 899999999942 111 123345668899999999999887 55667799999987554222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.|+++... .............
T Consensus 154 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~----- 213 (264)
T 3i4f_A 154 GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKE---------------ATIQEARQLKEHN----- 213 (264)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGS---------------CCHHHHHHC---------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccch---------------hccHHHHHHHhhc-----
Confidence 2234679999999999999988877 6899999999999987432 2233222222111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
.....+.+++|+|+++++++.... ...|++|++.+|...
T Consensus 214 -----------~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 214 -----------TPIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp ---------------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred -----------CCCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCceee
Confidence 122347789999999999987542 234589999877543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=193.79 Aligned_cols=228 Identities=16% Similarity=0.096 Sum_probs=164.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|+.+.+++.++++.
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG---EGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999998854322222222222 235688899999999998887753
Q ss_pred -CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||.... .....+....+++|+.++.++++++. +.+.+++|++||...|...
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 158 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF---------- 158 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC----------
Confidence 389999999997531 11233456688899999988887764 4567899999998877432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch--HHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS--GACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+..+... ... ..........
T Consensus 159 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~---- 218 (260)
T 2zat_A 159 -PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQ---------------VLWMDKARKEYMKES---- 218 (260)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTH---------------HHHSSHHHHHHHHHH----
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccch---------------hcccChHHHHHHHhc----
Confidence 23678999999999999998776 4899999999999876311 000 0011111111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
.....+.+++|+|+++++++..+. ...+++|++.+|...+
T Consensus 219 ------------~~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 219 ------------LRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp ------------HTCSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred ------------CCCCCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 112347899999999999887542 2245799998887665
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=191.49 Aligned_cols=222 Identities=14% Similarity=0.083 Sum_probs=160.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
++|+||||+|+||++++++|+++|++|+++ +|.........+.++.. ..++.++.+|+++++++.+++++ .
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY---GGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc---CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999999985 55432222222222221 34688899999999999988854 2
Q ss_pred CCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||..... ....+....+++|+.++.++++++.. .+.+++|++||...+... .+
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------~~ 147 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN-----------IG 147 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------TT
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC-----------CC
Confidence 799999999976432 12334566889999999999888765 366799999997655321 13
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|++++++|||.++++... .+............|
T Consensus 148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~------- 205 (244)
T 1edo_A 148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA---------------KLGEDMEKKILGTIP------- 205 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH---------------TTCHHHHHHHHTSCT-------
T ss_pred CccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhh---------------hcChHHHHHHhhcCC-------
Confidence 578999999999999888776 5899999999999886321 111222233333222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC--CCCcceEEecCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK--PGKVGIYNVGTGK 316 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~yni~~~~ 316 (393)
...+++++|+|++++.++..+. ...++.|++.++.
T Consensus 206 ---------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 206 ---------LGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred ---------CCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 2347899999999999885332 2235799997764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=192.66 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=161.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++|+||||+|+||+++++.|+++|++|++++|......... .++.....++.++.+|++|.+++.+++++
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 117 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV---DEIKSFGYESSGYAGDVSKKEEISEVINKILT 117 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH---HHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH---HHHHhcCCceeEEECCCCCHHHHHHHHHHHHH
Confidence 455689999999999999999999999999999877432222222 22222235788999999999999988754
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... ....+....+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 118 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 187 (285)
T 2c07_A 118 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN---------- 187 (285)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------
Confidence 3799999999976432 1233456688899999777776664 4567899999998665332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...|.+.+.++.+ .|++++++|||.+.++... .+.+..........+
T Consensus 188 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~---- 247 (285)
T 2c07_A 188 -VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD---------------KISEQIKKNIISNIP---- 247 (285)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------CCHHHHHHHHTTCT----
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchh---------------hcCHHHHHHHHhhCC----
Confidence 13568999999999999888766 4899999999999887422 112222233333222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+++++|+|++++.++.... ...++.|++.++.
T Consensus 248 ------------~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 248 ------------AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ------------CCCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 1237899999999999887532 2245799997664
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-25 Score=193.32 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=149.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~d~V 128 (393)
|+|+||||+|+||++++++|+++ +|++++|.... ..+...++ .. .++.+|+.|++++.+++++ .++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~---~~~~~~~~----~~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGA---LAELAREV----GA-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHH---HHHHHHHH----TC-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHH---HHHHHHhc----cC-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 58999999999999999999998 99998874321 11222222 12 7888999999999999842 289999
Q ss_pred EEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 129 MHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 129 i~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
||+||...... ...+....+++|+.++.++++++++.+.+++|++||...|.. ..+...|+.+|.
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~-----------~~~~~~Y~~sK~ 139 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQ-----------VPGFAAYAAAKG 139 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHS-----------STTBHHHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccC-----------CCCcchHHHHHH
Confidence 99999764321 334567789999999999999997667789999999888743 234679999999
Q ss_pred HHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 205 MSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 205 ~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
..|.+++.++.+ .|++++++||+.++++... + .+..
T Consensus 140 a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~-----------------------------------~------~~~~ 178 (207)
T 2yut_A 140 ALEAYLEAARKELLREGVHLVLVRLPAVATGLWA-----------------------------------P------LGGP 178 (207)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG-----------------------------------G------GTSC
T ss_pred HHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc-----------------------------------c------cCCC
Confidence 999999998877 6999999999999986200 0 1223
Q ss_pred ccccccHHHHHHHHHHHHhcCCCC
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPG 305 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~ 305 (393)
.+.+++++|+|++++.+++.+...
T Consensus 179 ~~~~~~~~dva~~~~~~~~~~~~~ 202 (207)
T 2yut_A 179 PKGALSPEEAARKVLEGLFREPVP 202 (207)
T ss_dssp CTTCBCHHHHHHHHHHHHC--CCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCc
Confidence 367899999999999999876543
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=190.96 Aligned_cols=223 Identities=17% Similarity=0.070 Sum_probs=160.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+|+||||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|++|.+++.+++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMA---AQAVVAGL---ENGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTC---TTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHH---hcCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999885322 11222222 12678899999999999888853
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+ ..++|++||...+...
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA---------- 153 (263)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC----------
Confidence 28999999999764322 2234566888999999998887754 34 5799999997665321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch-----------HHHHH
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS-----------GACFD 258 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 258 (393)
.+...|+.+|...|.+.+.++.+ .|++++++|||.++++... ... .....
T Consensus 154 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~~~~ 217 (263)
T 3ak4_A 154 -PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQE---------------REIIWEAELRGMTPEAVRA 217 (263)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHH---------------HHHHHHHHHHTSCHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhh---------------hhccccccccccCcHHHHH
Confidence 23578999999999999988776 4899999999999886310 110 11111
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...... ....+++++|+|+++++++..+. ...+++|++.++..
T Consensus 218 ~~~~~~----------------p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 218 EYVSLT----------------PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp HHHHTC----------------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred HHHhcC----------------CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 111111 12358899999999999987542 23457999987754
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=186.65 Aligned_cols=223 Identities=15% Similarity=0.040 Sum_probs=160.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|... ....+.+.. ...++.++.+|++|++++.+++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR---HGVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT---TSCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh---cCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999999999999988543 222222222 235688899999999999988853
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.++.++.++ +++.+.+++|++||...+... .
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~ 146 (255)
T 2q2v_A 78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS-----------T 146 (255)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-----------T
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC-----------C
Confidence 28999999999764322 2334566888999976665554 456677899999998776432 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch---HHH---H----HHH-
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS---GAC---F----DAA- 260 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~---~----~~~- 260 (393)
+...|+.+|...+.+.+.++.+ .|+++++++||.++++... .+. ... . ...
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 211 (255)
T 2q2v_A 147 GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ---------------KQIDDRAANGGDPLQAQHDLL 211 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH---------------HHHHHHHHHTCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh---------------hhcccccccccchHHHHHHHH
Confidence 3568999999999999998876 5899999999999886310 110 000 0 111
Q ss_pred hCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 261 RGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
. .......+++++|+|+++++++..+. ...++.|++.++..
T Consensus 212 ~----------------~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 212 A----------------EKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp T----------------TTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred h----------------ccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCcc
Confidence 1 12223458999999999999887532 22357999977643
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=192.56 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=160.0
Q ss_pred CcCCCCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHH
Q 016208 39 TKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNK 118 (393)
Q Consensus 39 ~~~~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 118 (393)
..+.++....+++|+||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|++|.+++.+
T Consensus 17 ~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~d~~~v~~ 90 (266)
T 3grp_A 17 QGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDK---LKEIAADL---GKDVFVFSANLSDRKSIKQ 90 (266)
T ss_dssp ----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---CSSEEEEECCTTSHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCceEEEEeecCCHHHHHH
Confidence 33334445667899999999999999999999999999999874322 22222222 3578999999999999988
Q ss_pred HHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCC
Q 016208 119 IFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKM 185 (393)
Q Consensus 119 ~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~ 185 (393)
+++. .++|+|||+||+..... ...+....+++|+.++.++.+++ ++.+..++|++||...+...
T Consensus 91 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~--- 167 (266)
T 3grp_A 91 LAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN--- 167 (266)
T ss_dssp HHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---------
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC---
Confidence 8754 38999999999764322 22345667889999966655554 45566799999997665322
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC
Q 016208 186 PITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262 (393)
Q Consensus 186 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+... .+..........
T Consensus 168 --------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~ 224 (266)
T 3grp_A 168 --------PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTD---------------KLNEKQKEAIMA 224 (266)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHH---------------TCCHHHHHHHHT
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhh---------------ccCHHHHHHHHh
Confidence 23578999999999999888776 5899999999999876311 122223333333
Q ss_pred CCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 263 ~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
..| ...+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 225 ~~p----------------~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 225 MIP----------------MKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp TCT----------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred cCC----------------CCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 333 2346789999999999887542 2345899997664
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=192.78 Aligned_cols=226 Identities=17% Similarity=0.114 Sum_probs=138.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++||||||+|+||++++++|+++|++|++++|.........+.+.. ....+.++.+|++|++++.+++++
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA---DGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999998854333333333322 246788999999999999988754
Q ss_pred --CCCcEEEEcccccC---c----cCCccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAY---V----GESTLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~---~----~~~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||+.. . ..........+++|+.++.+++++ +.+.+..++|++||...|.
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 153 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL--------- 153 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC---------
Confidence 28999999999732 1 112334567889999995555544 4555667999999987762
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+...|+.+|...+.+.+.++.+. |+++.+++||.++++.... ...........+..
T Consensus 154 -----~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------------~~~~~~~~~~~~~~-- 212 (253)
T 3qiv_A 154 -----YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRT--------------TTPKEMVDDIVKGL-- 212 (253)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC----------------------------------------
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhh--------------cCcHHHHHHHhccC--
Confidence 24579999999999999988874 7999999999999874321 01111112222221
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
....+.+++|+|+++++++.... ...+++|++.+|..+
T Consensus 213 --------------~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 213 --------------PLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQII 251 (253)
T ss_dssp ---------------------CCHHHHHHHHHHSGGGTTCCSCEEEC------
T ss_pred --------------CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCeec
Confidence 22345678999999999887532 224589999887654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=190.98 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=169.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC---------CCchhhhhhhhhcCCCCccEEEEccCCCHHHH
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---------GNMGAVKVLQELFPQPGQLQFIYADLGDAKAV 116 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 116 (393)
...+++||||||+|+||.+++++|+++|++|++++|... ......+....+.....++.++.+|++|.+++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 356689999999999999999999999999999988532 11222222222222246789999999999999
Q ss_pred HHHHhh-----CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCC
Q 016208 117 NKIFAE-----NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 117 ~~~~~~-----~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~ 186 (393)
.+++++ .++|+||||||+........+....+++|+.++.++++++.. .+ ..++|++||...+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 166 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--- 166 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc---
Confidence 988854 389999999998765444556778899999999999888643 22 46899999977653321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchH-HHHHHHhC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISG-ACFDAARG 262 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 262 (393)
.+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++.... .... .+......
T Consensus 167 ----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~~ 228 (278)
T 3sx2_A 167 ----SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINN--------------EFTREWLAKMAAA 228 (278)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS--------------HHHHHHHHHHHHH
T ss_pred ----cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchh--------------hhHHHHHhhccch
Confidence 11223567999999999999988876 47999999999999875321 1111 11111111
Q ss_pred CCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 263 ~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
... ....+ .... ..+++++|+|+++++++... ....|+++++.+|.
T Consensus 229 ~~~-~~~~~------~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 229 TDT-PGAMG------NAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGF 275 (278)
T ss_dssp CC---CTTS------CSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred hhh-hhhhh------hhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCc
Confidence 111 11111 2223 57899999999999998753 22345899997764
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=188.65 Aligned_cols=218 Identities=12% Similarity=0.096 Sum_probs=158.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|...... +...++ ...+.++.+|+++++++.+++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK---AMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHh---hcCceEEEecCCCHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999988542222 111222 12478899999999999988853
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++ .+++.+.+++|++||...+...
T Consensus 79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 147 (260)
T 1nff_A 79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT----------- 147 (260)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC-----------
Confidence 28999999999764321 233456688899999865554 4555667899999998776432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...|.+.+.++.+ .|++++++|||.++++... + .... +.
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~-----------------------~~~~-~~-- 199 (260)
T 1nff_A 148 VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--W-----------------------VPED-IF-- 199 (260)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--T-----------------------SCTT-CS--
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--c-----------------------chhh-HH--
Confidence 23568999999999999988876 6899999999999987421 0 0000 00
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
......+++++|+|+++++++.... ...++.|++.++..
T Consensus 200 --------~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 200 --------QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp --------CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --------hCccCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 0012347889999999999887532 22357999987754
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=191.31 Aligned_cols=229 Identities=14% Similarity=0.115 Sum_probs=167.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++||||||+|+||++++++|+++|++|++++|........ ....+.....++.++.+|++|.+++.+++++
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANE--TKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH--HHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHH--HHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998854322111 1111222245788999999999998888754
Q ss_pred --CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+||||||...... ...+....+++|+.++.++++++... ...++|++||...+....
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 191 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE---------- 191 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT----------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC----------
Confidence 37999999999764321 33456778999999999999999865 335899999988774422
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++.... .+.........
T Consensus 192 -~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~--------- 247 (291)
T 3ijr_A 192 -TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPS--------------SFDEKKVSQFG--------- 247 (291)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHH--------------HSCHHHHHHTT---------
T ss_pred -CChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccc--------------cCCHHHHHHHH---------
Confidence 3578999999999999998876 48999999999999862100 01111111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
.......+.+++|+|+++++++.... ...|+++++.+|..
T Consensus 248 -------~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 248 -------SNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGVI 288 (291)
T ss_dssp -------TTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSCC
T ss_pred -------ccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCCcc
Confidence 12233457889999999999987532 23458999977654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=192.05 Aligned_cols=230 Identities=13% Similarity=0.044 Sum_probs=168.1
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
.....++++|||||+|+||++++++|+++|++|++++|.........+.+... ..++.++.+|++|.+++.+++++
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA---GLEGRGAVLNVNDATAVDALVEST 99 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEEeCCCHHHHHHHHHHH
Confidence 33466789999999999999999999999999999988543333333333322 35788999999999999888754
Q ss_pred ----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+||||||+..... ...+....+++|+.++.++++++. +.+..++|++||...+...
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 171 (270)
T 3ftp_A 100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGN-------- 171 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC--------
Confidence 38999999999765432 233456688899999999988875 3355689999997766332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+... .+............|
T Consensus 172 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~p-- 231 (270)
T 3ftp_A 172 ---PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTK---------------GLPQEQQTALKTQIP-- 231 (270)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHH---------------HSCHHHHHHHHTTCT--
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchh---------------hcCHHHHHHHHhcCC--
Confidence 23578999999999999888776 5899999999999875211 111222233333222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++... ....|+++++.+|..+
T Consensus 232 --------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 232 --------------LGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp --------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred --------------CCCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCccc
Confidence 234789999999999988643 2234589999877544
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=187.42 Aligned_cols=224 Identities=14% Similarity=0.128 Sum_probs=162.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|........ ..++ ..++.++.+|+++.+++.+++++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~---~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ---AKKL---GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH---HHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHH---HHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999865433322 2222 24789999999999999988853
Q ss_pred -CCCcEEEEcccccCcc----------CCccChHHHHHHHHHHHHHHHHHHHhc----------CCcEEEEeecceeecC
Q 016208 123 -NAFDAVMHFAAVAYVG----------ESTLEPLRYYHNITSNTLVILEAMAAH----------KVKTLIYSSTCATYGE 181 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----------~~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~~V~~SS~~vyg~ 181 (393)
.++|+|||+||..... ....+....+++|+.++.++++++... +..++|++||...+..
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 163 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 163 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC
Confidence 2899999999976432 123345678899999999999988754 5678999999877643
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
. .+...|+.+|...+.+.+.++.+ .|+++++++||.+.++... .+......
T Consensus 164 ~-----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~ 217 (265)
T 2o23_A 164 Q-----------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT---------------SLPEKVCN 217 (265)
T ss_dssp C-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------------------C
T ss_pred C-----------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccc---------------ccCHHHHH
Confidence 2 23678999999999999887766 5899999999999876421 00000001
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
......| . ...+++++|+|++++.+++.... .++++++.++..+
T Consensus 218 ~~~~~~~---~------------~~~~~~~~dva~~~~~l~~~~~~-~G~~i~vdgG~~~ 261 (265)
T 2o23_A 218 FLASQVP---F------------PSRLGDPAEYAHLVQAIIENPFL-NGEVIRLDGAIRM 261 (265)
T ss_dssp HHHHTCS---S------------SCSCBCHHHHHHHHHHHHHCTTC-CSCEEEESTTCCC
T ss_pred HHHHcCC---C------------cCCCCCHHHHHHHHHHHhhcCcc-CceEEEECCCEec
Confidence 1111111 0 02367999999999999875433 4579999776543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=191.88 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=161.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.++. ...++.++.+|+++.+++.+++++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999999998854322222222222 135688999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc------CCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH------KVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... +.+++|++||...+..
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~---------- 166 (277)
T 2rhc_B 97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG---------- 166 (277)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSC----------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccC----------
Confidence 27999999999764321 22334668899999999999887654 5679999999765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch-----------HHHH
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS-----------GACF 257 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 257 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.+.++... ... ....
T Consensus 167 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~~~~ 230 (277)
T 2rhc_B 167 -VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA---------------SVREHYSDIWEVSTEEAF 230 (277)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH---------------HHHHHHHHHHTCCHHHHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh---------------hhhhhcccccccchHHHH
Confidence 123578999999999999988776 5899999999999875210 110 0011
Q ss_pred HHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 258 DAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
....... ....+++++|+|+++++++..+. ...+++|++.++.
T Consensus 231 ~~~~~~~----------------p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 231 DRITARV----------------PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp HHHHHHS----------------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHhcC----------------CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 1111111 12358899999999999987542 2345799997663
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=191.38 Aligned_cols=232 Identities=15% Similarity=0.070 Sum_probs=165.4
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++|+||||+ |+||++++++|+++|++|++++|... .....+.+... .+.+.++.+|+++++++.++++.
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEA---LGGALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHH---TTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHHHH
Confidence 445899999999 99999999999999999999988542 12222222221 13478899999999999888754
Q ss_pred ---CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||.... .....+....+++|+.++.++++++... +..++|++||...+..
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------- 153 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV-------- 153 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB--------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCC--------
Confidence 279999999997642 1233455678899999999999999765 1258999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.|+++..... ...+..........|
T Consensus 154 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~~~~~~~~~~~~~p- 216 (261)
T 2wyu_A 154 ---VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-------------PGFTKMYDRVAQTAP- 216 (261)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC-------------TTHHHHHHHHHHHST-
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc-------------cccHHHHHHHHhcCC-
Confidence 123568999999999999988776 489999999999998742110 111222233322222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHH
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKE 322 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~e 322 (393)
...+.+++|+|+++++++.... ...+++|++.++..++..+
T Consensus 217 ---------------~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 217 ---------------LRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp ---------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC--
T ss_pred ---------------CCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCccccCCC
Confidence 1236789999999999987432 2245799998876655443
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=191.45 Aligned_cols=238 Identities=13% Similarity=0.044 Sum_probs=162.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEEccCCCHHHHHHHHhh-
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
..+.++++|||||+|+||++++++|+++|++|++++|.... ...+...++... ...+.++.+|++|.+++.+++++
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPD--EIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHH--HHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH--HHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 34566899999999999999999999999999998874321 111222222111 35788999999999999988764
Q ss_pred ----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+...
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 170 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS-------- 170 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC--------
Confidence 38999999999864432 23345668899999999998887 44566799999997765332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH--HHhCCCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD--AARGIIP 265 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 265 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++..... .+.... .......
T Consensus 171 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---------------~~~~~~~~~~~~~~~ 232 (281)
T 3v2h_A 171 ---PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQ---------------IPDQARTRGITEEQV 232 (281)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC------------------------------------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhh---------------cchhhhhcCCCHHHH
Confidence 23568999999999999988876 589999999999998753211 000000 0000000
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
..... ..+.....+++++|+|+++++++.... ...|+++++.+|.
T Consensus 233 ~~~~~------~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 233 INEVM------LKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGW 278 (281)
T ss_dssp -------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTG
T ss_pred HHHHH------HhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCc
Confidence 00001 134455679999999999999887542 2345799997763
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=187.65 Aligned_cols=226 Identities=16% Similarity=0.118 Sum_probs=165.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++|+||||+|+||++++++|+++|++|++++|..... ..+...++......+.++.+|++|.+++.+++++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGA--ADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH--HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHH--HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999988743221 1122222222245788999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++. +.+..++|++||...+...
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 172 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN---------- 172 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC----------
Confidence 38999999999864332 234456688899999999888763 4456799999997765332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+... .. .........|
T Consensus 173 -~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------------~~---~~~~~~~~~p---- 229 (269)
T 4dmm_A 173 -PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS---------------EL---AAEKLLEVIP---- 229 (269)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC---------------HH---HHHHHGGGCT----
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc---------------cc---cHHHHHhcCC----
Confidence 23578999999999999888776 5899999999999886421 11 1122333222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC--CCCcceEEecCCCcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK--PGKVGIYNVGTGKGR 318 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++..+. ...|++|++.+|..+
T Consensus 230 ------------~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 230 ------------LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred ------------CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 2347789999999999998632 224589999877544
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=192.64 Aligned_cols=257 Identities=14% Similarity=0.104 Sum_probs=171.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC---------chhhhhhhhhcCCCCccEEEEccCCCHHH
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN---------MGAVKVLQELFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 115 (393)
....+++||||||+|+||++++++|+++|++|++++|..... ....+...++.....++.++.+|+++.++
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 345668999999999999999999999999999998852211 11111111222224678999999999999
Q ss_pred HHHHHhh-----CCCcEEEEcccccCcc--CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCC
Q 016208 116 VNKIFAE-----NAFDAVMHFAAVAYVG--ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 116 ~~~~~~~-----~~~d~Vi~~A~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~ 186 (393)
+.+++++ .++|+||||||+.... ....+....+++|+.++.++++++... +..++|++||...+......+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~ 165 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPP 165 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccc
Confidence 9888754 3899999999986543 234456778999999999999999765 345899999987765433333
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
..|..+..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+.... .. ........
T Consensus 166 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----------------~~-~~~~~~~~ 228 (287)
T 3pxx_A 166 GAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNS----------------AP-MYRQFRPD 228 (287)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSS----------------HH-HHHHHCTT
T ss_pred cccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc----------------cc-hhhhhccc
Confidence 344444445678999999999999998877 38999999999999874321 00 00011000
Q ss_pred CCceeEcCcc--ccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 264 IPGLKIRGTD--YNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 264 ~~~~~~~g~~--~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
...-...... ... .......+.+++|+|+++++++... ....|+++++.+|..++
T Consensus 229 ~~~~~~~~~~~~~~~-~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 229 LEAPSRADALLAFPA-MQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp SSSCCHHHHHHHGGG-GCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred cccchhHHHHhhhhh-hcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhhc
Confidence 0000000000 000 0111156889999999999998743 22345899998776543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=188.73 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=159.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|...... +...++.. ..++.++.+|+++++++.++++.
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE---KAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhhc-cCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999988532221 22222221 25789999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCC-cEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKV-KTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++.+. +++.+. +++|++||...+...
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 149 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------- 149 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC----------
Confidence 36999999999764322 2233466888999977666555 445565 799999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHh-----hCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSK-----TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|...|.+.+.++. ..+++++++|||.++++... .+..........
T Consensus 150 -~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~----- 208 (251)
T 1zk4_A 150 -PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVD---------------DLPGAEEAMSQR----- 208 (251)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHH---------------TSTTHHHHHTST-----
T ss_pred -CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhh---------------hcCchhhhHHHh-----
Confidence 2367899999999999988765 46899999999999987321 000000001000
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
.......+++++|+|++++.++.... ...++.|++.++..
T Consensus 209 ----------~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 209 ----------TKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp ----------TTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----------hcCCCCCCcCHHHHHHHHHHHcCcccccccCcEEEECCCcc
Confidence 11112348899999999999987532 22357999987743
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=190.10 Aligned_cols=227 Identities=15% Similarity=0.048 Sum_probs=162.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+... ..++.++.+|+++.+++.++++.
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY---GVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH---CSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999998654433333333222 24688999999999999888754
Q ss_pred -CCCcEEEEcccccCc-c-----CCccChHHHHHHHHHH----HHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-G-----ESTLEPLRYYHNITSN----TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~-----~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||.... . ....+....+++|+.+ ++.+++.+++.+.+++|++||...+...
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 179 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN--------- 179 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC----------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC---------
Confidence 369999999997644 1 1123345678899999 5677777877777899999997654220
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...|.+++.++.+ .+ ++.+++||.+..+... ..............|
T Consensus 180 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~p--- 240 (279)
T 3ctm_A 180 IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITD---------------FASKDMKAKWWQLTP--- 240 (279)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTS---------------SCCHHHHHHHHHHST---
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccc---------------ccChHHHHHHHHhCC---
Confidence 1234678999999999999998877 46 9999999999876421 111111222222112
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+++++|+|+++++++.... ...++++++.++..
T Consensus 241 -------------~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 241 -------------LGREGLTQELVGGYLYLASNASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp -------------TCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred -------------ccCCcCHHHHHHHHHHHhCccccCccCCEEEECCCee
Confidence 1237889999999999987532 23457999987643
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=188.21 Aligned_cols=232 Identities=14% Similarity=0.043 Sum_probs=161.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|+++++++.++++.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998854322222222222 235788999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 165 (273)
T 1ae1_A 96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL---------- 165 (273)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC----------
T ss_pred cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC----------
Confidence 47999999999764322 223455678899999999988874 4456799999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.++++......... ..............|
T Consensus 166 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~---------~~~~~~~~~~~~~~p---- 231 (273)
T 1ae1_A 166 -PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKN---------PHQKEEIDNFIVKTP---- 231 (273)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------------CHHHHHHHHHHST----
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcc---------cCcHHHHHHHHhcCC----
Confidence 23578999999999999988776 4899999999999987532110000 000111112222122
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
...+.+++|+|+++++++... ....++++++.++..
T Consensus 232 ------------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 232 ------------MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 268 (273)
T ss_dssp ------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ------------CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCcc
Confidence 123678999999999988743 222457999977643
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=186.81 Aligned_cols=228 Identities=16% Similarity=0.108 Sum_probs=161.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++||||||+|+||++++++|+++|++|++++|.... ... ..++ .. .++.+|+++.+++.++++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~---~~~~----~~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEV---AEAI----GG-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHH---HHHH----TC-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHH---HHHh----hC-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999886543 222 2222 14 7889999999998888754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||....... ..+....+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 75 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 143 (256)
T 2d1y_A 75 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE----------- 143 (256)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC-----------
Confidence 379999999997644321 223466888999999999887753 466799999997665321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh-CCCCceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR-GIIPGLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 269 (393)
.+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++. ......... .... ...
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~-------------------~~~~~~~~~~~~~~-~~~ 203 (256)
T 2d1y_A 144 QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA-------------------VLEAIALSPDPERT-RRD 203 (256)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------------------HHHHHC---------CHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch-------------------hhhccccccCCHHH-HHH
Confidence 23568999999999999988776 48999999999987641 111100000 0000 000
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccH
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~ 320 (393)
.. .......+++++|+|+++++++..+. ...+++|++.++..++.
T Consensus 204 ~~------~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 204 WE------DLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp HH------TTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred HH------hcCCCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 00 12223468999999999999987542 23457999988865543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=188.55 Aligned_cols=231 Identities=14% Similarity=0.106 Sum_probs=165.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.++++|||||+|+||.+++++|+++|++|++++|...... +...++.....++.++.+|+++.+++.+++++
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLE---EAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988543222 22233333346789999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH-----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM-----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+||||||...... ...+....+++|+.++.++++++ ++.+..++|++||...+...
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 150 (257)
T 3imf_A 81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG---------- 150 (257)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC----------
Confidence 38999999999754322 23345668899999999998887 33345799999997765332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++...... .....+........|
T Consensus 151 -~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~p--- 214 (257)
T 3imf_A 151 -PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKL------------WISEEMAKRTIQSVP--- 214 (257)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------------------CCSHHHHTTST---
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhc------------ccCHHHHHHHHhcCC---
Confidence 23578999999999999887754 4899999999999987532110 000001111222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
...+.+++|+|+++++++.... ...|+++++.+|..++
T Consensus 215 -------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 215 -------------LGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred -------------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 2347899999999999987543 2345899998776543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=183.84 Aligned_cols=225 Identities=13% Similarity=0.111 Sum_probs=152.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+|+|+||||+|+||++++++|+++|++|++++|..... ..++.++.+|++|++++.+++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE-------------QYPFATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS-------------CCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh-------------cCCceEEEcCCCCHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999998854311 12378899999999999988854
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++ ++.+.+++|++||...+.. .
T Consensus 72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~-----------~ 140 (250)
T 2fwm_X 72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTP-----------R 140 (250)
T ss_dssp CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC-----------C
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC-----------C
Confidence 27999999999764322 23455678899999999998887 4556679999999876532 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH-HHhCCCCceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD-AARGIIPGLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 269 (393)
.+...|+.+|...|.+.+.++.+ .|+++++++||.++++....... ...... ....... .
T Consensus 141 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~~~~~~~~~~~~~~---~ 204 (250)
T 2fwm_X 141 IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-------------SDDAEEQRIRGFGE---Q 204 (250)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------------------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-------------ChhHHHHHHhhhhh---c
Confidence 24678999999999999988776 48999999999999874221000 000000 0000000 0
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
.. .......+.+++|+|+++++++..+. ...++.+++.++..
T Consensus 205 ~~------~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 205 FK------LGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGGST 247 (250)
T ss_dssp -----------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred cc------ccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 00 01112247899999999999987532 23457998877643
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-23 Score=188.56 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=162.5
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++|+||||+ |+||++++++|+++|++|++++|... .....+.+... .+.+.++.+|+++.+++.++++.
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKG---FGSDLVVKCDVSLDEDIKNLKKFLE 94 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 556899999999 99999999999999999999988542 22222222221 13478899999999999888754
Q ss_pred ---CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhcC---CcEEEEeecceeecCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAHK---VKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|+|||+||+... .....+....+++|+.++.++++++...- .+++|++||...+..
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------- 167 (285)
T 2p91_A 95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKV------- 167 (285)
T ss_dssp HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSB-------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccC-------
Confidence 379999999997643 12233456688999999999999987652 269999999766532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.|.++..... ..............|
T Consensus 168 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~p 230 (285)
T 2p91_A 168 ----VPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI-------------TGFHLLMEHTTKVNP 230 (285)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C-------------TTHHHHHHHHHHHST
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc-------------cchHHHHHHHHhcCC
Confidence 123578999999999999988776 489999999999998753210 111222222222222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...+++|++.++.
T Consensus 231 ----------------~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 231 ----------------FGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY 266 (285)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ----------------CCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 1235789999999999886432 2235789997764
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=189.09 Aligned_cols=225 Identities=16% Similarity=0.128 Sum_probs=161.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC-CCCCCchhhhhhhhhcCCCCccEEEEccCCCH----HHHHHHHh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGNMGAVKVLQELFPQPGQLQFIYADLGDA----KAVNKIFA 121 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~----~~~~~~~~ 121 (393)
+.+++|+||||+|+||++++++|+++|++|++++| .........+.+.... ..++.++.+|+++. +++.++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR--AGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS--TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc--CCceEEEeccCCCccccHHHHHHHHH
Confidence 44579999999999999999999999999999988 4322222222222211 24688999999999 88888775
Q ss_pred h-----CCCcEEEEcccccCccCCc---------------cChHHHHHHHHHHHHHHHHHHHhc---CC------cEEEE
Q 016208 122 E-----NAFDAVMHFAAVAYVGEST---------------LEPLRYYHNITSNTLVILEAMAAH---KV------KTLIY 172 (393)
Q Consensus 122 ~-----~~~d~Vi~~A~~~~~~~~~---------------~~~~~~~~~n~~~~~~ll~~~~~~---~~------~~~V~ 172 (393)
+ .++|+||||||+....... .+....+++|+.++.++++++... +. +++|+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 4 3799999999976432211 344568899999999999998874 33 79999
Q ss_pred eecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCccccc
Q 016208 173 SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREH 249 (393)
Q Consensus 173 ~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 249 (393)
+||...+... .+...|+.+|...+.+.+.++.+ .|+++++++||.+.++ .
T Consensus 167 isS~~~~~~~-----------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~--------------- 219 (276)
T 1mxh_A 167 LCDAMTDLPL-----------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P--------------- 219 (276)
T ss_dssp ECCGGGGSCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S---------------
T ss_pred ECchhhcCCC-----------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c---------------
Confidence 9998776432 23578999999999999988776 4899999999999987 2
Q ss_pred ccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 250 GRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.+.+..........| - .+++.+++|+|+++++++.... ...++.|++.++.
T Consensus 220 -~~~~~~~~~~~~~~p------------~---~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 220 -AMPQETQEEYRRKVP------------L---GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp -SSCHHHHHHHHTTCT------------T---TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -cCCHHHHHHHHhcCC------------C---CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 111222223333222 1 1227899999999999987532 2245799997764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=186.65 Aligned_cols=229 Identities=15% Similarity=0.087 Sum_probs=163.2
Q ss_pred CCCCCcEEEEEcCCC-hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 45 HEPGVTHVLVTGGAG-YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
....+++|+||||+| .||++++++|+++|++|++++|.........+.+... ...++.++.+|+++.+++.+++++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL--GLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--CSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCCceEEEEeCCCCHHHHHHHHHHH
Confidence 345678999999998 5999999999999999999988654333333333222 125789999999999999888765
Q ss_pred ----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc-----CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH-----KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++... +..++|++||...+..
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 167 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRA-------- 167 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCC--------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCC--------
Confidence 37999999999764432 23345668889999999998887653 4568999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+.... ...........
T Consensus 168 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------------~~~~~~~~~~~----- 225 (266)
T 3o38_A 168 ---QHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEK--------------TSSSELLDRLA----- 225 (266)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhc--------------cCcHHHHHHHH-----
Confidence 234678999999999999988876 68999999999998764211 00011111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
.......+.+++|+|+++++++... ....|+++++.+|.
T Consensus 226 -----------~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 226 -----------SDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQR 265 (266)
T ss_dssp ------------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred -----------hcCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCCc
Confidence 1223445789999999999988753 23346899997663
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-24 Score=198.09 Aligned_cols=253 Identities=16% Similarity=0.057 Sum_probs=175.9
Q ss_pred CCcCCCCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC-------CCCchhhhhhhhhcCCCCccEEEEccC
Q 016208 38 STKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-------RGNMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 38 ~~~~~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
...+.++....+++||||||+|+||.+++++|+++|++|++++|.. +......+...++......+.++.+|+
T Consensus 16 ~~~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 95 (322)
T 3qlj_A 16 TQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNV 95 (322)
T ss_dssp ------CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCT
T ss_pred ccCCchhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 3344444556778999999999999999999999999999998751 112222222333322345788999999
Q ss_pred CCHHHHHHHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcC----------CcEEE
Q 016208 111 GDAKAVNKIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHK----------VKTLI 171 (393)
Q Consensus 111 ~~~~~~~~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~----------~~~~V 171 (393)
+|.+++.+++++ .++|+||||||+..... ...+....+++|+.++.++++++...- -.++|
T Consensus 96 ~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV 175 (322)
T 3qlj_A 96 ADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRII 175 (322)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEE
Confidence 999999888754 38999999999865322 233456688999999999988875331 14899
Q ss_pred EeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccc
Q 016208 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELRE 248 (393)
Q Consensus 172 ~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~ 248 (393)
++||...+... .+...|+.+|...+.+.+.++.+ .|+++..++|| +..+.....+
T Consensus 176 ~isS~~~~~~~-----------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~---------- 233 (322)
T 3qlj_A 176 NTSSGAGLQGS-----------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVF---------- 233 (322)
T ss_dssp EECCHHHHHCB-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSC----------
T ss_pred EEcCHHHccCC-----------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhh----------
Confidence 99997766332 23568999999999999998877 68999999999 6544321100
Q ss_pred cccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc---------
Q 016208 249 HGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR--------- 318 (393)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~--------- 318 (393)
.... . .......+++++|+|+++++++.... ...|++|++.+|...
T Consensus 234 ----~~~~-~-------------------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~ 289 (322)
T 3qlj_A 234 ----AEMM-A-------------------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGP 289 (322)
T ss_dssp ----CC----------------------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEE
T ss_pred ----hhhh-h-------------------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCccccc
Confidence 0000 0 01112345689999999999887432 224579999877644
Q ss_pred --------cHHHHHHHHHHHhCCCcc
Q 016208 319 --------SVKEFVEACKKATGVNIK 336 (393)
Q Consensus 319 --------s~~el~~~i~~~~g~~~~ 336 (393)
++.|+++.+.+.+|.+.+
T Consensus 290 ~~~~~~~~~~~el~~~~~~~~~~~~~ 315 (322)
T 3qlj_A 290 QIDKGARWDPAELGPVVADLLGKARP 315 (322)
T ss_dssp EEECSSCCCGGGHHHHHHHHHHHSCC
T ss_pred ccCccCCCCHHHHHHHHHHHhhccCC
Confidence 779999999999885543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=189.42 Aligned_cols=237 Identities=11% Similarity=0.067 Sum_probs=165.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.++++|||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|.+++.+++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD---TGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999998854333323333322 246789999999999999888764
Q ss_pred --CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+||||||.... . ....+....+++|+.++.++++++.. .+ .++|++||...+..
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 153 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHS---------- 153 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCC----------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccC----------
Confidence 389999999987522 1 12344566888999999999887643 34 59999999776533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|+++.....+.. .....+.....+........
T Consensus 154 -~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---- 224 (264)
T 3ucx_A 154 -QAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEH----QAGKYGTSVEDIYNAAAAGS---- 224 (264)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHH----HHHHTTCCHHHHHHHHHTTS----
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHh----hhhhcCCCHHHHHHHHhccC----
Confidence 223568999999999999998877 689999999999988631100000 00000000111222222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
....+.+++|+|+++++++... ....|+++++.+|..
T Consensus 225 ------------p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 225 ------------DLKRLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp ------------SSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ------------CcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 2345789999999999988753 233458999987754
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-23 Score=185.88 Aligned_cols=221 Identities=16% Similarity=0.113 Sum_probs=157.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++||||||+|+||++++++|+++|++|++++|.... ..+.+.. .++.++.+|+++.+++.++++.
T Consensus 24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA---SVTELRQ-----AGAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp ---CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH---HHHHHHH-----HTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH---HHHHHHh-----cCCeEEECCCCCHHHHHHHHHHHHH
Confidence 3455899999999999999999999999999999885432 2233333 2478999999999999888764
Q ss_pred --CCCcEEEEcccccCccCCc---cChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGEST---LEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||........ .+....+++|+.++.++++++.. .+..++|++||...+...
T Consensus 96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 164 (260)
T 3gem_A 96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS----------- 164 (260)
T ss_dssp HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC-----------
T ss_pred hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC-----------
Confidence 3799999999976443222 23345888999999998887753 455799999997766332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
.+...|+.+|...+.+.+.++.+. ++++.+++||.+..+... ............|
T Consensus 165 ~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~-----------------~~~~~~~~~~~~p------ 221 (260)
T 3gem_A 165 SKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKD-----------------DAAYRANALAKSA------ 221 (260)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------------------CC------
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCC-----------------CHHHHHHHHhcCC------
Confidence 236789999999999999988773 599999999999876311 0111111111111
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCccc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s 319 (393)
...+..++|+|++++++++.... .|++|++.+|..++
T Consensus 222 ----------~~r~~~~edva~~v~~L~~~~~i-tG~~i~vdGG~~~~ 258 (260)
T 3gem_A 222 ----------LGIEPGAEVIYQSLRYLLDSTYV-TGTTLTVNGGRHVK 258 (260)
T ss_dssp ----------SCCCCCTHHHHHHHHHHHHCSSC-CSCEEEESTTTTTC
T ss_pred ----------CCCCCCHHHHHHHHHHHhhCCCC-CCCEEEECCCcccC
Confidence 12355689999999999864433 45899998876654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=188.20 Aligned_cols=229 Identities=16% Similarity=0.147 Sum_probs=166.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++++||||+|+||++++++|+++|++|++++|.. . ..+...++.....++.++.+|++|.+++.++.+.
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~---~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-G---VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAA 103 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-H---HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-H---HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHh
Confidence 35568999999999999999999999999999998632 1 2222333333346789999999999998877432
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+...
T Consensus 104 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~----------- 172 (273)
T 3uf0_A 104 TRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG----------- 172 (273)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC-----------
Confidence 38999999999865432 23345668899999999988876 34566799999998766332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+..... ..............|
T Consensus 173 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p----- 234 (273)
T 3uf0_A 173 RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAAL-------------RADDERAAEITARIP----- 234 (273)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-------------HTSHHHHHHHHHHST-----
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhc-------------ccCHHHHHHHHhcCC-----
Confidence 23678999999999999998877 689999999999998632100 001112222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++... ....|+++++.+|...
T Consensus 235 -----------~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 235 -----------AGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp -----------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -----------CCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcCccC
Confidence 234678999999999988753 2334689999877543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=186.08 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=158.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC-CCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|.. .......+.++. ...++.++.+|++|++++.+++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK---LGSDAIAVRADVANAEDVTNMVKQTVDV 79 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999998732 211122222222 135688999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++ ++.+.+++|++||...+...
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (246)
T 2uvd_A 80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN----------- 148 (246)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC-----------
Confidence 37999999999764321 23345668889999966665554 44567899999997665321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+..+.... +............|
T Consensus 149 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~~~~~~~~~~~~~p----- 208 (246)
T 2uvd_A 149 PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDV---------------LDENIKAEMLKLIP----- 208 (246)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSC---------------CCTTHHHHHHHTCT-----
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhh---------------cCHHHHHHHHhcCC-----
Confidence 13568999999999998887765 58999999999998764221 00011111222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+++++|+|+++++++... ....++.+++.++.
T Consensus 209 -----------~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 209 -----------AAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 123789999999999998753 22345789887664
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=184.23 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=163.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|+||++++++|+++|++|++++|.........+ ++ .....++.+|++|++++.+++++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~---~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD---YL---GDNGKGMALNVTNPESIEAVLKAITDE 80 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---HH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hh---cccceEEEEeCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999885432222222 22 13578899999999999988754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||+..... ...+....+++|+.++.++++++.. .+..++|++||...+...
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 149 (248)
T 3op4_A 81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN----------- 149 (248)
T ss_dssp HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-----------
Confidence 38999999999765432 2345566889999999999888753 456799999997665332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.+..+... .+............|
T Consensus 150 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~p----- 209 (248)
T 3op4_A 150 AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK---------------ALNDEQRTATLAQVP----- 209 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTT---------------TSCHHHHHHHHHTCT-----
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhh---------------hcCHHHHHHHHhcCC-----
Confidence 24678999999999999888776 5899999999999876422 112222222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 210 -----------~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 210 -----------AGRLGDPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -----------CCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 2347899999999999887432 2345899997664
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=186.18 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=165.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC----------CCchhhhhhhhhcCCCCccEEEEccCCCHHH
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR----------GNMGAVKVLQELFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 115 (393)
...+++++||||+|+||.+++++|+++|++|++++|... ......+....+......+.++.+|++|.++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 355689999999999999999999999999999988421 2222222233333334678899999999999
Q ss_pred HHHHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecC
Q 016208 116 VNKIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGE 181 (393)
Q Consensus 116 ~~~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~ 181 (393)
+.+++++ .++|+||||||+..... ...+....+++|+.++.++++++. +.+ ..++|++||...+..
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 171 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKA 171 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccC
Confidence 9988764 38999999999875432 233455678899999999888874 333 568999999776533
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
. .+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++.... ........
T Consensus 172 ~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--------------~~~~~~~~ 226 (280)
T 3pgx_A 172 T-----------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEP--------------EAMMEIFA 226 (280)
T ss_dssp C-----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCH--------------HHHHHHHH
T ss_pred C-----------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccch--------------hhhhhhhh
Confidence 2 23578999999999999998877 68999999999999874220 01111111
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
........+... ..... .+++++|+|+++++++.... ...|+++++.+|.
T Consensus 227 ~~~~~~~~~~~~-------~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 227 RHPSFVHSFPPM-------PVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp HCGGGGGGSCCB-------TTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred cCchhhhhhhhc-------ccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 100000001110 11122 38999999999999887533 2345799997663
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=186.15 Aligned_cols=228 Identities=14% Similarity=0.144 Sum_probs=164.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+++||||||+|+||++++++|+++|++|+++ +|.... ..+...++.....++.++.+|++|.+++.++++.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKA---ALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999986 553322 2222223323346789999999999999888765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++ ++.+..++|++||...+.. .
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~-----------~ 148 (258)
T 3oid_A 80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRY-----------L 148 (258)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSB-----------C
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCC-----------C
Confidence 37899999999654322 22344567889999999988887 4445679999999776532 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+..... .-............|
T Consensus 149 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p----- 210 (258)
T 3oid_A 149 ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHF-------------PNREDLLEDARQNTP----- 210 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGC-------------TTHHHHHHHHHHHCT-----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhc-------------ccCHHHHHHHHhcCC-----
Confidence 34679999999999999998877 489999999999987632110 011122233333222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++.... ...|+++++.+|...
T Consensus 211 -----------~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 211 -----------AGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp -----------TSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred -----------CCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCccC
Confidence 2347889999999999987543 334689999877543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=189.57 Aligned_cols=227 Identities=16% Similarity=0.146 Sum_probs=156.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|+||++++++|+++|++|+++.+.... ...+....+.....++.++.+|+++.+++.+++++
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANRE--AADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChh--HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 346799999999999999999999999999887432221 11122222222246788999999999999888765
Q ss_pred -CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc-------CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH-------KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++... +..++|++||...+....
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------ 175 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA------ 175 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT------
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC------
Confidence 28999999999764311 33445678999999999998887643 345899999977654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.+...|+.+|...|.+.+.++.+ .|+++.+++||.|.++.... ...+........
T Consensus 176 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------------~~~~~~~~~~~~---- 233 (272)
T 4e3z_A 176 ----TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHAS--------------GGLPDRAREMAP---- 233 (272)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------------------------
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccc--------------cCChHHHHHHhh----
Confidence 12457999999999999888776 48999999999999874221 011111111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
......+.+++|+|+++++++.... ...|++|++.+|
T Consensus 234 ------------~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 234 ------------SVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp ------------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------------cCCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 1223346789999999999987432 234579999765
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=188.56 Aligned_cols=229 Identities=15% Similarity=0.109 Sum_probs=164.9
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++|+||||+ |+||++++++|+++|++|++++|.. ......+.+.... +...++.+|+++++++.+++++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHH
Confidence 445799999999 9999999999999999999999865 2222233332211 2347899999999999888754
Q ss_pred ---CCCcEEEEcccccCc----c-----CCccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV----G-----ESTLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~----~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|+|||+||.... . ....+....+++|+.++.++++++...- ..++|++||...+..
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 155 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA------- 155 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccC-------
Confidence 279999999997642 1 2234556789999999999999997652 248999999766532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.|+++..... ..............|
T Consensus 156 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~~~~~~~~~~p 218 (265)
T 1qsg_A 156 ----IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-------------KDFRKMLAHCEAVTP 218 (265)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHST
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-------------cccHHHHHHHHhcCC
Confidence 123578999999999999998876 489999999999998742210 111222232322222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
...+.+++|+|+++++++.... ...+++|++.++..++
T Consensus 219 ----------------~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 219 ----------------IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGB
T ss_pred ----------------CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCcCCC
Confidence 1236789999999999887532 2245799998775543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=187.45 Aligned_cols=234 Identities=14% Similarity=0.130 Sum_probs=168.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|+||++++++|+++|++|++++|..... .+...++ ..++.++.+|++|.+++.++++.
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNI---ARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998853222 2222222 25788999999999998877654
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|++||+||+..... ...+....+++|+.++.++++++... ...++|++||...+... .+
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 148 (255)
T 4eso_A 80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH-----------PG 148 (255)
T ss_dssp HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC-----------TT
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-----------CC
Confidence 38999999999865432 33445668899999999999999764 23589999998766432 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++..++||.|..+..... + .. ......+........|
T Consensus 149 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~---~~-----~~~~~~~~~~~~~~~p------- 212 (255)
T 4eso_A 149 MSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVA-G---IT-----EAERAEFKTLGDNITP------- 212 (255)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCT-T---SC-----HHHHHHHHHHHHHHST-------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccc-c---CC-----hhhHHHHHHHHhccCC-------
Confidence 678999999999999998877 489999999999988743210 0 00 0111122222222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHH
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKE 322 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~e 322 (393)
...+.+++|+|+++++++.......|+++++.+|...++.+
T Consensus 213 ---------~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 213 ---------MKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTBCC
T ss_pred ---------CCCCcCHHHHHHHHHHHcCcCcCccCCEEEECCCccccCcC
Confidence 23367899999999998875333356899998887665443
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=189.66 Aligned_cols=232 Identities=12% Similarity=0.017 Sum_probs=165.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-C
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-A 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~ 124 (393)
.+.+++|+||||+|+||.+++++|+++|++|++++|...... +...++ ..++.++.+|+++.+++.+++++. +
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGE---AAARTM---AGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHTTS---SSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHh---cCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 456689999999999999999999999999999988543222 222222 357899999999999999999654 7
Q ss_pred CcEEEEcccccCcc--CCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC-C-CCCCCCCCCCCCChHH
Q 016208 125 FDAVMHFAAVAYVG--ESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD-K-MPITESTPQKPINPYG 200 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~-~-~~~~E~~~~~p~~~Y~ 200 (393)
+|+|||+||+.... ....+....+++|+.++.++++++.....+++|++||...+.... . ....|..+..+...|+
T Consensus 87 iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 166 (291)
T 3rd5_A 87 ADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYS 166 (291)
T ss_dssp EEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHH
T ss_pred CCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHH
Confidence 89999999986432 234566789999999999999999988777999999988775432 1 1222234455677899
Q ss_pred HHHHHHHHHHHHHHhh---CC--CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 201 KAKKMSEDIIIDFSKT---TN--MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~---~g--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
.||...+.+.+.++.+ .| +++..++||.|..+-.. ............ .+
T Consensus 167 ~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~~-~~---------- 220 (291)
T 3rd5_A 167 QSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQG---------------ASGRKLGDALMS-AA---------- 220 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccc---------------ccchHHHHHHHH-HH----------
Confidence 9999999999988776 35 99999999999876422 111111111110 00
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
..+-..+++|+|+++++++..+ ...|+.|++.++
T Consensus 221 -----~~~~~~~~~~~A~~~~~l~~~~-~~~G~~~~vdgG 254 (291)
T 3rd5_A 221 -----TRVVATDADFGARQTLYAASQD-LPGDSFVGPRFG 254 (291)
T ss_dssp ---------CHHHHHHHHHHHHHHHSC-CCTTCEEEETTS
T ss_pred -----HHHHhCCHHHHHHHHHHHHcCC-CCCCceeCCccc
Confidence 1122346899999999999875 334567777543
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=184.94 Aligned_cols=200 Identities=13% Similarity=0.088 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-- 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 123 (393)
.+++|+||||+|+||++++++|+++| ++|++++|...... .+.++ ...++.++.+|+++.+++.+++++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~----~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT----ELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH----HHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH----HHHhc--cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999 99999998543322 22222 2357899999999999998887532
Q ss_pred -----CCcEEEEcccccC-cc----CCccChHHHHHHHHHHHHHHHHHHHhc----------C-----CcEEEEeeccee
Q 016208 124 -----AFDAVMHFAAVAY-VG----ESTLEPLRYYHNITSNTLVILEAMAAH----------K-----VKTLIYSSTCAT 178 (393)
Q Consensus 124 -----~~d~Vi~~A~~~~-~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~----------~-----~~~~V~~SS~~v 178 (393)
++|+|||+||... .. ....+....+++|+.++.++++++... + ..++|++||...
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 8999999999765 22 123345668889999999988877543 4 679999999877
Q ss_pred ecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhC---CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHH
Q 016208 179 YGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT---NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGA 255 (393)
Q Consensus 179 yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
+..... +..+..+...|+.+|...|.+++.++.+. |+++++++||.+..+...
T Consensus 156 ~~~~~~----~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-------------------- 211 (250)
T 1yo6_A 156 SITDNT----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG-------------------- 211 (250)
T ss_dssp CSTTCC----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------------
T ss_pred ccCCcc----cccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC--------------------
Confidence 643221 12233467789999999999999988774 899999999998765210
Q ss_pred HHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC
Q 016208 256 CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~ 303 (393)
. ..+++++|+|++++.++....
T Consensus 212 -----------------------~---~~~~~~~~~a~~~~~~~~~~~ 233 (250)
T 1yo6_A 212 -----------------------K---NAALTVEQSTAELISSFNKLD 233 (250)
T ss_dssp ---------------------------------HHHHHHHHHHHTTCC
T ss_pred -----------------------C---CCCCCHHHHHHHHHHHHhccc
Confidence 0 125688999999999998654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=189.88 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=165.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC--CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG--NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
...++++|||||+|+||.+++++|+++|++|++++|.... .....+.+.. ...++.++.+|++|.+++.+++++
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE---CGRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH---TTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999998774221 1111122222 235788999999999998887754
Q ss_pred ----CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||..... ....+....+++|+.++.++++++...-. .++|++||...+...
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~--------- 193 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS--------- 193 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC---------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC---------
Confidence 4899999999975321 12344567899999999999999986633 499999998877532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++..... ..........
T Consensus 194 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-------------~~~~~~~~~~-------- 250 (294)
T 3r3s_A 194 --PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISG-------------GQTQDKIPQF-------- 250 (294)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTT-------------TSCGGGSTTT--------
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCcccccccc-------------CCCHHHHHHH--------
Confidence 23578999999999999988876 489999999999988631000 0000000000
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
........+.+++|+|+++++++... ....|+++++.+|..+
T Consensus 251 --------~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 251 --------GQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp --------TTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred --------HhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 02223345778999999999988743 2234589999877654
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=185.92 Aligned_cols=237 Identities=10% Similarity=0.078 Sum_probs=158.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ...++.++.+|++|++++.+++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV-SGAQVDIVAGDIREPGDIDRLFEKARDL 83 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS-TTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999885432222222222110 012688999999999999888753
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||...... ...+....+++|+.++.++++++ ++.+.+++|++||...+... .
T Consensus 84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~ 152 (260)
T 2z1n_A 84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW-----------Q 152 (260)
T ss_dssp TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------T
T ss_pred cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC-----------C
Confidence 14999999999754321 23345668889999986665554 45567899999998776432 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHH-HHHHhCCCCceeEc
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGAC-FDAARGIIPGLKIR 270 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 270 (393)
+...|+.+|...+.+.+.++.+ .|+++++++||.++++.....+..... . ....... ......
T Consensus 153 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~---~~~~~~~~~~~~~~-------- 219 (260)
T 2z1n_A 153 DLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERAR--R---SGITVEEALKSMAS-------- 219 (260)
T ss_dssp TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------------------------------------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhc--c---cCCcHHHHHHHHHh--------
Confidence 3568999999999999988776 489999999999998753210000000 0 0000000 000101
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
......+.+++|+|+++++++... ....++.+++.++.
T Consensus 220 --------~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 220 --------RIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGGA 258 (260)
T ss_dssp --------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred --------cCCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 111234789999999999998753 22345789887663
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-23 Score=187.29 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=169.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||.+++++|+++|++|++++|.... ..+...++.....++.++.+|+++.+++.++++.
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNA---LAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR 82 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHH---HHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998775332 2233333333346788999999999999888754
Q ss_pred -CCCcEEEEcccccCc-----cCCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-----GESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+||||||+... .....+....+++|+.++.++++++. +.+..++|++||...+.. +
T Consensus 83 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------~ 152 (280)
T 3tox_A 83 FGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA----------G 152 (280)
T ss_dssp HSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB----------C
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC----------C
Confidence 389999999997532 12234456788999999999888764 345569999999766521 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+....... ...+..........|
T Consensus 153 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-----------~~~~~~~~~~~~~~p---- 217 (280)
T 3tox_A 153 FAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLP-----------GAAPETRGFVEGLHA---- 217 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGST-----------TCCTHHHHHHHTTST----
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhcc-----------ccCHHHHHHHhccCc----
Confidence 234678999999999999998877 48999999999999875321000 011222333333322
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccH
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~ 320 (393)
...+.+++|+|+++++++... ....|+++++.+|..++.
T Consensus 218 ------------~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 218 ------------LKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred ------------cCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 234778999999999998754 233468999988866554
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-23 Score=188.95 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=163.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhc--CCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELF--PQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ....++.++.+|+++.+++.++++.
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 4566899999999999999999999999999999885432222222222211 0135789999999999999988854
Q ss_pred ----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+.+++|++||.. +..
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~--------- 164 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAG--------- 164 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTC---------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccC---------
Confidence 36999999999653221 2234566789999999999998765 2346899999976 211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+.+.++.+ .|++++++|||.++|+.....+. ..............|
T Consensus 165 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----------~~~~~~~~~~~~~~p-- 229 (303)
T 1yxm_A 165 --FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYG-----------SWGQSFFEGSFQKIP-- 229 (303)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSG-----------GGGGGGGTTGGGGST--
T ss_pred --CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhcc-----------ccchHHHHHHHhcCc--
Confidence 123568999999999999988876 48999999999999983110000 000111111111111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++.... ...++.|++.++..+
T Consensus 230 --------------~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 230 --------------AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267 (303)
T ss_dssp --------------TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred --------------ccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCeec
Confidence 1247889999999999987532 234579999877654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=184.03 Aligned_cols=230 Identities=11% Similarity=0.030 Sum_probs=162.1
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
.....+++||||||+|+||++++++|+++|++|++++|...... ..+..+.+|++|.+++.+++++
T Consensus 9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~ 75 (269)
T 3vtz_A 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV-------------NVSDHFKIDVTNEEEVKEAVEKT 75 (269)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT-------------TSSEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc-------------CceeEEEecCCCHHHHHHHHHHH
Confidence 34566799999999999999999999999999999988543321 3677889999999999888754
Q ss_pred ----CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||+...... .......+++|+.++.++++++.. .+..++|++||...+...
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 147 (269)
T 3vtz_A 76 TKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT-------- 147 (269)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC--------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC--------
Confidence 389999999997654322 223455778999999888887643 466799999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+. ++++.+++||.|.++........ ....................
T Consensus 148 ---~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---- 216 (269)
T 3vtz_A 148 ---KNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKM----EVGEDENAVERKIEEWGRQH---- 216 (269)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHH----HHCCSTTHHHHHHHHHHHHS----
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhc----cccccchhhHHHHHHHHhcC----
Confidence 235789999999999999988874 89999999999987521000000 00000000011112222211
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
....+.+++|+|+++++++... ....|+++++.+|..
T Consensus 217 ------------p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 217 ------------PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp ------------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ------------CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 2345778999999999998753 223458999987743
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=190.28 Aligned_cols=250 Identities=12% Similarity=0.019 Sum_probs=168.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+........++.++.+|+++++++.+++++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999998854322222222222110011688999999999999888754
Q ss_pred -CCCcEEEEcccccCccC------CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE------STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+ +++|++||...+...
T Consensus 104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~--------- 173 (297)
T 1xhl_A 104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA--------- 173 (297)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC---------
T ss_pred cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC---------
Confidence 37999999999754321 2334566889999999988887754 34 699999998766432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.|.++...... .... .+.-............
T Consensus 174 -~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~----~~~~--~~~~~~~~~~~~~~~~---- 242 (297)
T 1xhl_A 174 -HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMG----LPET--ASDKLYSFIGSRKECI---- 242 (297)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTT----CCHH--HHHHHHHHHHHCTTTC----
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccc----cccc--cccchHHHHHHHHhcC----
Confidence 023568999999999999988764 6899999999999886311000 0000 0000001111111111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC--CCCCcceEEecCCCcccHHHHHHHHHH
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA--KPGKVGIYNVGTGKGRSVKEFVEACKK 329 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~--~~~~~~~yni~~~~~~s~~el~~~i~~ 329 (393)
....+.+++|+|+++++++... ....++.+++.++..+...+.+..+.+
T Consensus 243 ------------p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 243 ------------PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp ------------TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred ------------CCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhh
Confidence 1234789999999999998743 223457999988876665554444443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=186.38 Aligned_cols=237 Identities=13% Similarity=0.030 Sum_probs=163.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.++++|||||+|+||++++++|+++|++|++++|....... ...++.....++.++.+|++|.+++.+++++
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~---~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSA---AVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVE 97 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH---HHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885432222 2233333346789999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh------cCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA------HKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~------~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+..++|++||...+..
T Consensus 98 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~--------- 168 (279)
T 3sju_A 98 RFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQG--------- 168 (279)
T ss_dssp HHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSC---------
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccC---------
Confidence 37999999999764332 2233456778999999999988754 45679999999776532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++........... ..+..............|
T Consensus 169 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p-- 240 (279)
T 3sju_A 169 --VMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYAR----HWGVTEQEVHERFNAKIP-- 240 (279)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCS----SSCCCHHHHHHHHHTTCT--
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhh----cccCChHHHHHHHHhcCC--
Confidence 223578999999999999988877 689999999999987521100000000 000011222233333222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 241 --------------~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 241 --------------LGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp --------------TSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred --------------CCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 3357889999999999887432 2345799997664
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=184.45 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=160.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ...++.++.+|+++.+++.+++++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA-PDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC-TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999885432222222222211 124688999999999999888754
Q ss_pred -CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||.... . ....+....+++|+.++..+++ .+++.+.+++|++||...+..
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 158 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG----------- 158 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB-----------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccC-----------
Confidence 379999999997643 1 1223456688899988776554 445556779999999766532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.+.++....... ..................|
T Consensus 159 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~p---- 227 (267)
T 1iy8_A 159 IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMK-------QLDPENPRKAAEEFIQVNP---- 227 (267)
T ss_dssp CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHH-------HHCTTCHHHHHHHHHTTCT----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhcccc-------ccChhhhhhHHHHHhccCC----
Confidence 123578999999999999888766 58999999999998752100000 0000001101111211111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++..+. ...++.+++.++..+
T Consensus 228 ------------~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 228 ------------SKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 265 (267)
T ss_dssp ------------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred ------------CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 2347899999999999887532 234579999777544
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=185.82 Aligned_cols=224 Identities=15% Similarity=0.129 Sum_probs=159.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.... ..+...++... +++.++.+|++|.+++.+++++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~---~~~~~~~l~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEA---CADTATRLSAY-GDCQAIPADLSSEAGARRLAQALGEL 102 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHHHTTS-SCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHHHhc-CceEEEEeeCCCHHHHHHHHHHHHHh
Confidence 556899999999999999999999999999999875322 22222233222 3688899999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCC----cEEEEeecceeecCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKV----KTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~----~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+||||||...... ...+....+++|+.++.++++++. +.+. +++|++||...+....
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~------ 176 (276)
T 2b4q_A 103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG------ 176 (276)
T ss_dssp CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC------
Confidence 37999999999764321 233456788999999977777654 3444 7999999987764321
Q ss_pred CCCCCCCC-hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC--C
Q 016208 190 STPQKPIN-PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG--I 263 (393)
Q Consensus 190 ~~~~~p~~-~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 263 (393)
+.. .|+.+|...|.+.+.++.+ .|+++++++||.+..+... ............ .
T Consensus 177 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~ 236 (276)
T 2b4q_A 177 -----EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR---------------HIANDPQALEADSAS 236 (276)
T ss_dssp -----CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTH---------------HHHHCHHHHHHHHHT
T ss_pred -----CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchh---------------hcchhHHHHHHhhcC
Confidence 234 8999999999999988776 5899999999999876311 111111111111 1
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.| ...+.+++|+|+++++++..+. ...++++++.++.
T Consensus 237 ~p----------------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 237 IP----------------MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp ST----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CC----------------CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 12 1237899999999999987532 2345789887664
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-23 Score=183.88 Aligned_cols=213 Identities=12% Similarity=0.077 Sum_probs=147.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++++||||+|+||++++++|+++|++|++++|.........+.++.. ..++.++.+|++|.+++.++++.
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA---GGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999998654444444444332 45789999999999999988854
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+...
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 149 (252)
T 3h7a_A 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG----------- 149 (252)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCC-----------
T ss_pred hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCC-----------
Confidence 27999999999765322 23345668889999998887776 44556799999997665322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcE-EEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAV-MILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++ .++.||.|..+... ...+.......
T Consensus 150 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~---------------~~~~~~~~~~~-------- 206 (252)
T 3h7a_A 150 SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVR---------------ERREQMFGKDA-------- 206 (252)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------------------
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhh---------------ccchhhhhhhh--------
Confidence 23678999999999999988876 58999 89999998765321 11111111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
...... +++++|+|+++++++..+..
T Consensus 207 --------~~~~~~-~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 207 --------LANPDL-LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp ----------------CCHHHHHHHHHHHHHCCGG
T ss_pred --------hcCCcc-CCCHHHHHHHHHHHHhCchh
Confidence 111223 78999999999999986543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=184.83 Aligned_cols=223 Identities=15% Similarity=0.070 Sum_probs=158.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+|+|+||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|+++++++.+++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE---GAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999885322 22222222 24678899999999999888753
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHH----HHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLV----ILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~----ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||..... ....+....+++|+.++.. ++..+++.+.+++|++||...+...
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 145 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL----------- 145 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC-----------
Confidence 2899999999976432 1233456688899998874 5555666677899999998766332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|++++++|||.++++. ... ..... ....
T Consensus 146 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~-------------------~~~----~~~~~--~~~~ 200 (254)
T 1hdc_A 146 ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-------------------TAE----TGIRQ--GEGN 200 (254)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------------------HHH----HTCCC--STTS
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcc-------------------ccc----cchhH--HHHH
Confidence 23578999999999999988776 58999999999998752 111 10000 0000
Q ss_pred CccccCCCCccccccc-cHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYI-DVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i-~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
. .......+. +++|+|+++++++..+. ...++.+++.++..
T Consensus 201 ~------~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 201 Y------PNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp C------TTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred H------hcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCCcc
Confidence 0 111122367 99999999999987532 23457998877643
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=184.60 Aligned_cols=224 Identities=16% Similarity=0.087 Sum_probs=160.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++|+||||+|+||++++++|+++|++|++++|...... ....+.+|+++.+++.++++.
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~--------------~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA--------------ADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC--------------CSEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--------------hhhccCcCCCCHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999887543221 223457899999988877654
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+..
T Consensus 91 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----------- 159 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRP----------- 159 (266)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBC-----------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC-----------
Confidence 38999999999875432 23345567889999999999887 5556679999999766532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++.....+ ...+.............
T Consensus 160 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--------~~~~~~~~~~~~~~~~~------ 225 (266)
T 3uxy_A 160 GPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGF--------AKRGFDPDRAVAELGRT------ 225 (266)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHH--------HHTTCCHHHHHHHHHTT------
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhh--------hcccccchHHHHHHHhc------
Confidence 224678999999999999988876 4899999999999876210000 00000011111222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
.....+.+++|+|+++++++.... ...|+++++.+|..+
T Consensus 226 ----------~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 226 ----------VPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGKAV 265 (266)
T ss_dssp ----------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred ----------CCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCEeC
Confidence 223457899999999999987542 234589999877654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=185.25 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=163.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC-CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
..+.++||||||+|+||++++++|+++|++|+++++... ......+.+.. ...++.++.+|+++.+++.+++++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA---LGFDFYASEGNVGDWDSTKQAFDKVK 86 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCeeEEEecCCCCHHHHHHHHHHHH
Confidence 355689999999999999999999999999999884333 22222232222 245789999999999999888754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+..
T Consensus 87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 156 (256)
T 3ezl_A 87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG---------- 156 (256)
T ss_dssp HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGS----------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccC----------
Confidence 27999999999764322 23445668899999977776665 4556679999999766533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+... ...+..........+
T Consensus 157 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~--- 217 (256)
T 3ezl_A 157 -QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK---------------AIRPDVLEKIVATIP--- 217 (256)
T ss_dssp -CSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHHHST---
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccc---------------ccCHHHHHHHHhcCC---
Confidence 224679999999999999888776 6899999999999875321 122333333333322
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++... ....|++|++.+|..+
T Consensus 218 -------------~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 218 -------------VRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCEeC
Confidence 234678999999999988643 2334689999877543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=188.48 Aligned_cols=230 Identities=15% Similarity=0.099 Sum_probs=153.5
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++++||||+|+||++++++|+++|++|++++|... ....+...++.....++.++.+|++|++++.+++++
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA--EGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH--HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999986332 222222222222246789999999999988887754
Q ss_pred ---CCCcEEEEcccccC--cc----CCccChHHHHHHHHHHHHHHHHHHHhc----C---CcEEEEeecceeecCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAY--VG----ESTLEPLRYYHNITSNTLVILEAMAAH----K---VKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~--~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~~V~~SS~~vyg~~~~~~ 186 (393)
.++|+|||+||+.. .. ....+....+++|+.++.++++++... + ..++|++||...+...
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~---- 178 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS---- 178 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----------
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC----
Confidence 38999999999732 11 123445667789999998888776533 2 4589999997766332
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.|..+... ............
T Consensus 179 -------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~- 235 (280)
T 4da9_A 179 -------PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTA---------------AVSGKYDGLIES- 235 (280)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------------------
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchh---------------hcchhHHHHHhh-
Confidence 23568999999999999998877 6899999999999876422 111111111111
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCc
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKG 317 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~ 317 (393)
.......+.+++|+|+++++++..... ..|+++++.+|..
T Consensus 236 --------------~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 236 --------------GLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp --------------------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred --------------cCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 011233477899999999999875432 2457999977754
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=186.99 Aligned_cols=236 Identities=14% Similarity=0.074 Sum_probs=169.6
Q ss_pred CCCCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 45 HEPGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 45 ~~~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
.....++|+||||+ |+||++++++|+++|++|++++|..+... ..+.+... .+.+.++.+|+++.+++.+++++
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD-RITEFAAE---FGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHH---TTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHH-HHHHHHHH---cCCcEEEECCCCCHHHHHHHHHH
Confidence 44566899999999 99999999999999999999998633222 22222111 24688999999999999988865
Q ss_pred -----CCCcEEEEcccccCcc---------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVG---------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~---------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~ 186 (393)
.++|+|||+||+.... ....+....+++|+.++.++++++... +..++|++||...+..
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~----- 160 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA----- 160 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-----
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC-----
Confidence 2799999999976431 233455678899999999999998765 2348999999776532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+..... ...+.........
T Consensus 161 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~ 221 (271)
T 3ek2_A 161 ------IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-------------KSFGKILDFVESN 221 (271)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-------------HHHHHHHHHHHHH
T ss_pred ------CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-------------cchHHHHHHHHhc
Confidence 224679999999999999988876 589999999999987642210 1122333333333
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHH
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFV 324 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~ 324 (393)
.+ ...+.+++|+|+++++++... ....|+++++.+|..+++.++.
T Consensus 222 ~~----------------~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 222 SP----------------LKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp ST----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC-
T ss_pred CC----------------cCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhh
Confidence 22 123678999999999998753 3334689999988777765554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=187.24 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=161.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCC---ccEEEEccCCCHHHHHHHHhh-
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG---QLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.. ... ++.++.+|++|++++.+++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILK---SGVSEKQVNSVVADVTTEDGQDQIINST 80 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT---TTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence 4558999999999999999999999999999998854322222222222 122 688999999999999888754
Q ss_pred ----CCCcEEEEcccccCccC--------CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGE--------STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~ 186 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+ +++|++||...+...
T Consensus 81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---- 155 (280)
T 1xkq_A 81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA---- 155 (280)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC----
T ss_pred HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC----
Confidence 37999999999764321 2234566888999999999888764 34 799999998766432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.+.++...... .... .+.-...........
T Consensus 156 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~--~~~~~~~~~~~~~~~ 223 (280)
T 1xkq_A 156 ------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMG----MPDQ--ASQKFYNFMASHKEC 223 (280)
T ss_dssp ------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTT----CCHH--HHHHHHHHHHHCTTT
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccc----cccc--cccchHHHHHHHHcC
Confidence 123568999999999999988765 6899999999999987311000 0000 000000111111111
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC--CCCCcceEEecCCCc
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA--KPGKVGIYNVGTGKG 317 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~--~~~~~~~yni~~~~~ 317 (393)
. ....+.+++|+|+++++++..+ ....++.+++.++..
T Consensus 224 ~----------------p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 224 I----------------PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 263 (280)
T ss_dssp C----------------TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred C----------------CCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcc
Confidence 1 1234789999999999988643 223457999977744
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=182.28 Aligned_cols=214 Identities=12% Similarity=0.021 Sum_probs=158.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+|+||||||+|+||++++++|+++|++|++++|.... ..++.++.+|++|.+++.++++.
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 71 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFKE 71 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999885432 14788999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 140 (264)
T 2dtx_A 72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT----------- 140 (264)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC-----------
Confidence 37999999999764332 2335567889999998888887754 356799999998776432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCC--CcEEEEeeccccCCCCCCCCCCCCCCcccccccch-------H----HHHHHH
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTTN--MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS-------G----ACFDAA 260 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~ 260 (393)
.+...|+.+|...|.+.+.++.+.+ +++++++||.+.++... .+. . ......
T Consensus 141 ~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 205 (264)
T 2dtx_A 141 KNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVR---------------KAAELEVGSDPMRIEKKISEW 205 (264)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHH---------------HHHHHHHCSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchh---------------hhhhcccccCchhhHHHHHHH
Confidence 2367899999999999999887643 99999999999764200 000 0 011111
Q ss_pred hCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 261 RGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.... ....+++++|+|+++++++.... ...++.|++.++.
T Consensus 206 ~~~~----------------p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 206 GHEH----------------PMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGL 246 (264)
T ss_dssp HHHS----------------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HhcC----------------CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 1111 12347899999999999987532 2345799887664
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=186.62 Aligned_cols=231 Identities=15% Similarity=0.108 Sum_probs=156.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++|+||||+|+||++++++|+++|++|++++|...... +...++ ...+.++.+|+++.+++.+++++
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAE---RVAGEI---GDAALAVAADISKEADVDAAVEAALS 79 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH---HHHHHh---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999988543222 222222 35789999999999999888754
Q ss_pred --CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc----C----CcEEEEeecceeecCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH----K----VKTLIYSSTCATYGEPDKMPI 187 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~----~----~~~~V~~SS~~vyg~~~~~~~ 187 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... + ..++|++||...+..
T Consensus 80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------ 153 (261)
T 3n74_A 80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP------ 153 (261)
T ss_dssp HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC------
T ss_pred hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC------
Confidence 28999999999764211 23345568889999988888776432 1 347999999765532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC
Q 016208 188 TESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII 264 (393)
Q Consensus 188 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
......|+.+|...+.+.+.++.+ .++++..++||.+..+.....++ ...........
T Consensus 154 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-----------~~~~~~~~~~~--- 214 (261)
T 3n74_A 154 -----RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMG-----------EDSEEIRKKFR--- 214 (261)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------------
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcc-----------cCcHHHHHHHh---
Confidence 223567999999999999998877 68999999999998874321100 00001111111
Q ss_pred CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccH
Q 016208 265 PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSV 320 (393)
Q Consensus 265 ~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~ 320 (393)
.......+++++|+|+++++++... ....|+++++.+|..++.
T Consensus 215 -------------~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 215 -------------DSIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp ---------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTC--
T ss_pred -------------hcCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcccCC
Confidence 1223346889999999999988643 223468999988876654
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=184.95 Aligned_cols=230 Identities=10% Similarity=0.040 Sum_probs=163.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|+++++... ....+....+.....++.++.+|++|.+++.++++.
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN--DHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH--HHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999875332 222222233333346799999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||+..... ...+....+++|+.++.++++.+.. .+..++|++||...+...
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 169 (269)
T 3gk3_A 101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGA----------- 169 (269)
T ss_dssp HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----------
T ss_pred cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCC-----------
Confidence 38999999999764432 2334566888999999988887643 456799999997766332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+.... ....... ...
T Consensus 170 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~---------------~~~~~~~---~~~------ 225 (269)
T 3gk3_A 170 FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEA---------------VPQDVLE---AKI------ 225 (269)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------------------CCS------
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhh---------------hchhHHH---HHh------
Confidence 23578999999999999888776 58999999999998764321 1110000 000
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
. .......+.+++|+|+++++++.... ...|+++++.+|..+|
T Consensus 226 ~------~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 226 L------PQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp G------GGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTSCCC
T ss_pred h------hcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCEeCc
Confidence 0 11223457789999999999887543 2346899998876543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=190.24 Aligned_cols=237 Identities=18% Similarity=0.125 Sum_probs=159.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ...++.++.+|++|++++.++++.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc-CCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999885422221122221111 124688899999999999888754
Q ss_pred -CCCcEEEEcccccCccCCccChHHHHHHHHHHHHH----HHHHHHhcC---CcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLV----ILEAMAAHK---VKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~----ll~~~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||... ..+....+++|+.++.. +++.+++.+ .+++|++||...+... .
T Consensus 84 ~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~ 148 (267)
T 2gdz_A 84 FGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV-----------A 148 (267)
T ss_dssp HSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----------T
T ss_pred cCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC-----------C
Confidence 36899999999753 35677889999886554 555555443 5799999998776432 2
Q ss_pred CCChHHHHHHHHHHHHHHHH--h---hCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 195 PINPYGKAKKMSEDIIIDFS--K---TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~--~---~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
+...|+.+|...+.+.+.++ . ..|+++++++||.+.++... .+... ............
T Consensus 149 ~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~--~~~~~~~~~~~~ 211 (267)
T 2gdz_A 149 QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE---------------SIEKE--ENMGQYIEYKDH 211 (267)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHH---------------GGGCH--HHHGGGGGGHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhh---------------ccccc--cccchhhhHHHH
Confidence 35689999999999988742 2 36899999999999875210 00000 000000000000
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHH
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEF 323 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el 323 (393)
.. .......+++++|+|+++++++.... ..+++|++.+++.+++.|+
T Consensus 212 ~~------~~~~~~~~~~~~dvA~~v~~l~s~~~-~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 212 IK------DMIKYYGILDPPLIANGLITLIEDDA-LNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp HH------HHHHHHCCBCHHHHHHHHHHHHHCTT-CSSCEEEEETTTEEEECCC
T ss_pred HH------HHhccccCCCHHHHHHHHHHHhcCcC-CCCcEEEecCCCcccccCc
Confidence 00 00111247899999999999998654 3458999998887776553
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=181.48 Aligned_cols=243 Identities=16% Similarity=0.103 Sum_probs=166.3
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
++....++++|||||+|+||++++++|+++|++|+++++..... ..+...++.....++.++.+|++|.+++.+++++
T Consensus 12 ~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 12 IPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKD--AEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp CTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHH--HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 34456778999999999999999999999999999987643221 1122222222246789999999999999888765
Q ss_pred -----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+||+..... ...+....+++|+.++.++++++...-. .++|++||.... ..
T Consensus 90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~----------~~ 159 (270)
T 3is3_A 90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK----------DF 159 (270)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT----------TC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc----------cC
Confidence 38999999999865432 3345567889999999999999887633 489999996421 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+......... .+.. ................|
T Consensus 160 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~p--- 233 (270)
T 3is3_A 160 SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHY-IPNG--TSYTAEQRQQMAAHASP--- 233 (270)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGG-STTG--GGSCHHHHHHHHHHHST---
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhc-cccc--cccchHHHHHHHHhcCC---
Confidence 2334678999999999999998877 5899999999999876311000000 0000 00011122222222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++... ....|+++++.+|.
T Consensus 234 -------------~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 234 -------------LHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp -------------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred -------------CCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 234678999999999998743 22345799987653
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=189.45 Aligned_cols=229 Identities=15% Similarity=0.102 Sum_probs=166.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||++++++|+++|++|++++|...... +...++.....++.++.+|++|.+++.+++++
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVA---QTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHH---HHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356689999999999999999999999999999877433222 22233322245788999999999999988864
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+||||||+..... ...+....+++|+.++.++++++.. .+..++|++||...+..
T Consensus 100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~----------- 168 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELA----------- 168 (271)
T ss_dssp HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSB-----------
T ss_pred HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCC-----------
Confidence 27999999999764332 2344566889999999998776643 45679999999665422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch--HHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS--GACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+... .+. +..........|
T Consensus 169 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~~p-- 231 (271)
T 4ibo_A 169 RATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQ---------------ALIDNPEFDAWVKARTP-- 231 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH---------------HHHHCHHHHHHHHHHST--
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchh---------------hcccCHHHHHHHHhcCC--
Confidence 224678999999999999998876 6899999999999876311 111 122223333222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
...+.+++|+|+++++++... ....|+++++.+|...+
T Consensus 232 --------------~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 232 --------------AKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGMLSV 270 (271)
T ss_dssp --------------TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred --------------CCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCeecc
Confidence 223678899999999988753 23346899998775543
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=184.47 Aligned_cols=236 Identities=13% Similarity=-0.007 Sum_probs=158.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC-CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|.... .....+.+.... ..++.++.+|++|++++.+++++
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH--GVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH--TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc--CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999875432 222222222110 24688899999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 149 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS----------- 149 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC-----------
Confidence 37999999999764321 233456688899999988887774 3466799999998765332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHH-hCCCCceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAA-RGIIPGLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+.++........... . .+.-........ ..
T Consensus 150 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~------- 218 (260)
T 1x1t_A 150 ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAE-K---NGVDQETAARELLSE------- 218 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHH-------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhcc-c---cCCchHHHHHHHhhc-------
Confidence 23578999999999999988776 489999999999988742210000000 0 000000000000 00
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
......+.+++|+|+++++++... ....+++|++.++.
T Consensus 219 ---------~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 219 ---------KQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp ---------HCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---------cCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 011235789999999999998753 22345799997664
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-22 Score=183.11 Aligned_cols=229 Identities=15% Similarity=0.039 Sum_probs=167.5
Q ss_pred CCCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
.+.+++++||||+| +||++++++|+++|++|++++|.........+..... +.+.++.+|++|.+++.+++++
T Consensus 27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~ 102 (296)
T 3k31_A 27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL----GVKLTVPCDVSDAESVDNMFKVL 102 (296)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH----TCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHH
Confidence 35668999999998 9999999999999999999998643222222222222 4578899999999999988865
Q ss_pred ----CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|+||||||+... .....+....+++|+.++.++++++...- ..++|++||...+..
T Consensus 103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~------- 175 (296)
T 3k31_A 103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKV------- 175 (296)
T ss_dssp HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC-------
T ss_pred HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccC-------
Confidence 379999999997642 22344566788999999999999987652 348999999776532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+..... .-............|
T Consensus 176 ----~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p 238 (296)
T 3k31_A 176 ----VPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-------------SDFHYILTWNKYNSP 238 (296)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-------------HHHHHHHHHHHHHST
T ss_pred ----CCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-------------cchHHHHHHHHhcCC
Confidence 223679999999999999988877 589999999999998743210 111222233333222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+..++|+|+++++++... ....|+++++.+|..+
T Consensus 239 ----------------~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 239 ----------------LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ----------------CCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccc
Confidence 123567899999999998753 2334689999877544
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=183.01 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=163.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|+++.+++.+++++
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDA---AVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTA 97 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999875322 22222222 35788999999999999888754
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||+...... ..+....+++|+.++.++++++. +.+..++|++||...+..
T Consensus 98 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 166 (277)
T 4dqx_A 98 KWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSA----------- 166 (277)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSC-----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcC-----------
Confidence 289999999997644322 23445577799999988887774 345569999999777633
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+.....+. ...-...........
T Consensus 167 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---------~~~~~~~~~~~~~~~------ 231 (277)
T 4dqx_A 167 IADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFA---------EAKDPAKLRSDFNAR------ 231 (277)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHH---------TCSCHHHHHHHHHTT------
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcc---------cccchhHHHHHHHhc------
Confidence 223678999999999999988776 48999999999997652000000 000001111112222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCccc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRS 319 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s 319 (393)
.....+.+++|+|+++++++.... ...|+++++.+|..++
T Consensus 232 ----------~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 232 ----------AVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp ----------STTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSSC
T ss_pred ----------CcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhhh
Confidence 223457789999999999987542 2345899998876543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=182.62 Aligned_cols=227 Identities=13% Similarity=0.064 Sum_probs=159.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
+.+|+|+||||+|+||++++++|+++|++|++++|.... . +.+.++ .++.++.+|+++++++.++++. .++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~-~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK---L-QELEKY----PGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---H-GGGGGS----TTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH---H-HHHHhc----cCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 445899999999999999999999999999999884321 1 111111 3788999999999999877654 479
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+.... .+..
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------~~~~ 145 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV----------VNRC 145 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC----------TTBH
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC----------CCCc
Confidence 99999999764322 223455678899999999888865 34667999999976653211 1356
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...|.+.+.++.+ .|++++++|||.++++.....+ .. ...............|
T Consensus 146 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--------~~-~~~~~~~~~~~~~~~~--------- 207 (246)
T 2ag5_A 146 VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERI--------QA-RGNPEEARNDFLKRQK--------- 207 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHH--------HH-SSSHHHHHHHHHHTCT---------
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhh--------hc-ccCcHHHHHHHHhcCC---------
Confidence 8999999999999998776 4899999999999986311000 00 0000111122222212
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...++.+++.++.
T Consensus 208 -------~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 208 -------TGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp -------TSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred -------CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1237899999999999987532 2345789887663
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=182.76 Aligned_cols=245 Identities=15% Similarity=0.157 Sum_probs=165.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN- 123 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 123 (393)
....++++|||||+|+||++++++|+++|++|++++|.........+.+..... ...+.++.+|+++.+++.+++++.
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g 84 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-DAILQPVVADLGTEQGCQDVIEKYP 84 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-TCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEecCCCCHHHHHHHHHhcC
Confidence 345668999999999999999999999999999998864433333333333221 246788999999999999888653
Q ss_pred CCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|++|||||+...... ..+....+++|+.++.++++++ ++.+..++|++||...+.. ..+
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~ 153 (267)
T 3t4x_A 85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMP-----------SQE 153 (267)
T ss_dssp CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSC-----------CTT
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccC-----------CCc
Confidence 79999999997654322 2334456889999977665554 4456679999999776632 234
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCC-CCCCcccccccchHHHHHH-HhCCCCceeEc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGE-APHPELREHGRISGACFDA-ARGIIPGLKIR 270 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (393)
...|+.+|...+.+.+.++.+ .|+++..++||.+..+........ .+. ........... .....+
T Consensus 154 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----- 223 (267)
T 3t4x_A 154 MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPN-----EQLTIEEAEKRFMKENRP----- 223 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTT-----SCCCHHHHHHHHHHHHCT-----
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcc-----cCCCHHHHHHHHhhccCC-----
Confidence 678999999999999998876 479999999999876520000000 000 00000011111 111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
......+.+++|+|+++++++... ....|+++++.+|...+
T Consensus 224 --------~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 224 --------TSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp --------TCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred --------cccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 112345889999999999988743 23346899998776554
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=186.72 Aligned_cols=176 Identities=18% Similarity=0.168 Sum_probs=132.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC-CCchhhhhhh-hhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNMGAVKVLQ-ELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+++||||||+|+||++++++|+++|++|+++.|... ......+.+. .+.....++.++.+|++|.+++.+++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~ 83 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG 83 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999988532 2222222222 1111135789999999999999988864
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+||||||+..... ...+....+++|+.++.++++++ ++.+.+++|++||...+....
T Consensus 84 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~--------- 154 (324)
T 3u9l_A 84 EDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTP--------- 154 (324)
T ss_dssp HHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCC---------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCC---------
Confidence 28999999999764332 23344567899999999999888 566778999999987663221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
.....|+.||...|.+.+.++.+ .|+++++++||.|.++.
T Consensus 155 -~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 155 -PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred -CcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 12568999999999999998877 69999999999998654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=182.78 Aligned_cols=226 Identities=16% Similarity=0.070 Sum_probs=160.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhh-hhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVL-QELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
...+++||||||+|+||++++++|+++|++|++++|.........+.+ ... ...+.++.+|+++++++.+++++
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc---CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999999999999988533222222222 111 24678899999999999888754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeeccee-ecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCAT-YGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~v-yg~~~~~~~~E~ 190 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++. +.+.+++|++||..+ +.
T Consensus 95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------- 164 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV---------- 164 (267)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc----------
Confidence 37999999999764322 123345678899999999887764 445679999999762 21
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch--HHHHHHHhCCCC
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS--GACFDAARGIIP 265 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 265 (393)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.+..+... .+. +..........|
T Consensus 165 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~~p 228 (267)
T 1vl8_A 165 -TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE---------------AVFSDPEKLDYMLKRIP 228 (267)
T ss_dssp -CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH---------------HHHTCHHHHHHHHHTCT
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccc---------------ccccChHHHHHHHhhCC
Confidence 1224678999999999999988776 5899999999999876311 111 111222222222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+++++|+|+++++++... ....++.+++.+|.
T Consensus 229 ----------------~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 229 ----------------LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 264 (267)
T ss_dssp ----------------TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ----------------CCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCCC
Confidence 123678999999999988753 22345788887663
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-22 Score=179.23 Aligned_cols=216 Identities=14% Similarity=0.105 Sum_probs=156.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|..... ..+.++.+|++|++++.+++++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP--------------EGFLAVKCDITDTEQVEQAYKEIEE 83 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh--------------ccceEEEecCCCHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999998854321 2478899999999999888754
Q ss_pred --CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||..... ....+....+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 84 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 153 (253)
T 2nm0_A 84 THGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGS---------- 153 (253)
T ss_dssp HTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCH----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC----------
Confidence 3689999999976432 13456778899999999998887653 466799999997654221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+..+... .+............|
T Consensus 154 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~p---- 213 (253)
T 2nm0_A 154 -AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTK---------------VLTDEQRANIVSQVP---- 213 (253)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------------------CHHHHHTTCT----
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchh---------------hcCHHHHHHHHhcCC----
Confidence 12468999999999999988776 5899999999998765311 000001111112111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+++++|+|+++++++..+. ...++.+++.++..
T Consensus 214 ------------~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 214 ------------LGRYARPEEIAATVRFLASDDASYITGAVIPVDGGLG 250 (253)
T ss_dssp ------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred ------------CCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCccc
Confidence 1247899999999999987532 23457898876643
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=181.40 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=163.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||+|+||++++++|+++|++|+++.+... ....+...++.....++.++.+|+++.+++.+++++
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDA--AGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH 102 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4479999999999999999999999999987654322 222223333322346889999999999999888754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH-----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++.+. +.+..++|++||...+...
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 171 (267)
T 4iiu_A 103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN----------- 171 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC-----------
T ss_pred CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC-----------
Confidence 38999999999765332 334556788999999999998873 4556799999997765332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+... .. ...........|
T Consensus 172 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~-~~~~~~~~~~~p----- 230 (267)
T 4iiu_A 172 RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIE---------------ME-ESALKEAMSMIP----- 230 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC---------------CC-HHHHHHHHHTCT-----
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccc---------------cc-HHHHHHHHhcCC-----
Confidence 23678999999998888887766 4899999999999887532 11 222333333332
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+.+++|+|+++++++... ....|+++++.+|
T Consensus 231 -----------~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 231 -----------MKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----------CCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 223678999999999988753 2334579988665
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=183.82 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=161.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCc-hhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNM-GAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
...+++|+||||+|+||++++++|+++|++|++++|...... ...+.+.. ...++.++.+|+++.+++.+++++
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE---KGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999999999999988433221 11222222 235789999999999999888754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||+..... ...+....+++|+.++.++++.+. +.+..++|++||...+...
T Consensus 103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 173 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGN--------- 173 (271)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---------
T ss_pred HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCC---------
Confidence 38999999999865432 233456688899999988777764 3466799999997765332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .++++..++||.+..+... .+.........
T Consensus 174 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~------- 229 (271)
T 4iin_A 174 --MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNA---------------NLKDELKADYV------- 229 (271)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------------CG-------
T ss_pred --CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchh---------------hhcHHHHHHHH-------
Confidence 24678999999999999988877 6899999999999876321 11111111111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.......+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 230 ---------~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 230 ---------KNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp ---------GGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ---------hcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 11223457899999999999987542 2346899997764
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=184.91 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++||||||+|+||++++++|+++|++|++++|.........+.+.... ..++.++.+|++|.+++.++++.
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF--GTDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999885433333333332211 35789999999999998887754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++... + ..++|++||...+..
T Consensus 95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 164 (266)
T 4egf_A 95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP---------- 164 (266)
T ss_dssp HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC----------
Confidence 38999999999865432 22345567889999999988877532 3 458999999876633
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+..... .-............|
T Consensus 165 -~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p--- 227 (266)
T 4egf_A 165 -LPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRV-------------WGDEAKSAPMIARIP--- 227 (266)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHH-------------TCSHHHHHHHHTTCT---
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhh-------------ccChHHHHHHHhcCC---
Confidence 223678999999999999988876 589999999999987521100 000112222223222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++... ....++++++.+|..+
T Consensus 228 -------------~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 228 -------------LGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYTM 265 (266)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCccC
Confidence 234678999999999988753 2334589999877543
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=181.79 Aligned_cols=226 Identities=16% Similarity=0.134 Sum_probs=160.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++++||||+|+||++++++|+++|++|++++|.... ....+...++.....++.++.+|+++++++.+++++ .
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQE-EQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGH-HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch-HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3789999999999999999999999999999885432 001222222222235788999999999998888753 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCC-cEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKV-KTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
++|+|||+||...... ...+....+++|+.++.++++++.. .+. +++|++||...+... .
T Consensus 81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~ 149 (258)
T 3a28_C 81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF-----------P 149 (258)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-----------T
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-----------C
Confidence 8999999999764321 2334566889999999998888764 355 799999997765321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch-----------HHHHHHH
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS-----------GACFDAA 260 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 260 (393)
+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+... ... .......
T Consensus 150 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 214 (258)
T 3a28_C 150 ILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWE---------------QIDAELSKINGKPIGENFKEY 214 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHH---------------HHHHHHHHHHCCCTTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhh---------------hhhhhhccccCCchHHHHHHH
Confidence 3578999999999999988766 5899999999999764200 000 0011111
Q ss_pred hCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 261 RGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
....| ...+.+++|+|+++++++.... ...++.+++.++..
T Consensus 215 ~~~~p----------------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 215 SSSIA----------------LGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGML 256 (258)
T ss_dssp HTTCT----------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSC
T ss_pred HhcCC----------------CCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEe
Confidence 11111 2347899999999999987532 23457998877654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=179.20 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=154.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|...... .+..+.+|+++++++.+++++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------GLFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH--------------HhcCeeccCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988543221 122378999999998888754
Q ss_pred -CCCcEEEEcccccCcc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||..... ....+....+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 147 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI----------- 147 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC-----------
Confidence 3799999999976432 2234556788999999999888775 3566799999997654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+..+... .+............|
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p----- 207 (247)
T 1uzm_A 148 GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTR---------------ALDERIQQGALQFIP----- 207 (247)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------HSCHHHHHHHGGGCT-----
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchh---------------hcCHHHHHHHHhcCC-----
Confidence 23568999999999999888776 5899999999999764210 111111122222111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
...+++++|+|+++++++... ....++.+++.++..
T Consensus 208 -----------~~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 208 -----------AKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGMG 244 (247)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred -----------CCCCcCHHHHHHHHHHHcCccccCCcCCEEEECCCcc
Confidence 124789999999999998753 223457999977643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=185.68 Aligned_cols=234 Identities=14% Similarity=0.063 Sum_probs=167.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
....+++++||||+|+||.+++++|+++|++|++++|.........+.+.... ..++.++.+|+++.+++.+++++
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 100 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT--GRRCLPLSMDVRAPPAVMAAVDQAL 100 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999885433333333332211 25788999999999999888754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+||||||...... ...+....+++|+.++.++++++. +.+..++|++||...+...
T Consensus 101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 171 (277)
T 4fc7_A 101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQ--------- 171 (277)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTC---------
T ss_pred HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC---------
Confidence 38999999999654322 234456688999999999998874 3345699999997766332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.|.++...... ..............|
T Consensus 172 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~------------~~~~~~~~~~~~~~p--- 234 (277)
T 4fc7_A 172 --ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRL------------GGPQASLSTKVTASP--- 234 (277)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHH------------SCCHHHHHHHHHTST---
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhc------------cCCHHHHHHHhccCC---
Confidence 23578999999999999988876 4899999999999886210000 001112222222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
...+.+++|+|+++++++... ....|+++++.+|..++
T Consensus 235 -------------~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 235 -------------LQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp -------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred -------------CCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCcccC
Confidence 234678999999999998743 23346899998776544
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=179.54 Aligned_cols=225 Identities=13% Similarity=0.078 Sum_probs=156.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.... ...+.+... ..++.++.+|+++++++.+++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNL---GRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchh--HHHHHHHhc---CCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999885411 111222222 35788999999999999887653
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.+++++ +++.+.+++|++||...+...
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI----------- 148 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC-----------
Confidence 48999999999764321 2334556888999998777776 555667899999998776432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+.++..... ..... ...... +.
T Consensus 149 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~~~~~-~~~~~~---~~-- 208 (249)
T 2ew8_A 149 EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS--------------ALSAM-FDVLPN---ML-- 208 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------------------C---TT--
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhc--------------cccch-hhHHHH---hh--
Confidence 23578999999999999998876 589999999999988632100 00000 000000 00
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
.....+.+++|+|+++++++... ....++.+++.++.
T Consensus 209 ---------~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 209 ---------QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp ---------SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred ---------CccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCCc
Confidence 01234789999999999998743 22345789887663
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=185.47 Aligned_cols=228 Identities=14% Similarity=0.034 Sum_probs=162.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|++|.+++.+++++
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDA---ADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999875332 22222233 35789999999999998888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+||||||+..... ...+....+++|+.++.++++++.. .+..++|++||...+.. .
T Consensus 101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~-----------~ 169 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVA-----------V 169 (277)
T ss_dssp HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC-----------C
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC-----------C
Confidence 38999999999864422 2344566888999999888887753 45678999999766532 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC-ceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP-GLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++.. ... ....+ ....
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~-------------------~~~----~~~~~~~~~~ 226 (277)
T 3gvc_A 170 GGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ-------------------QTA----MAMFDGALGA 226 (277)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-------------------HHH----HTCC------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH-------------------HHh----hhcchhhHHH
Confidence 23678999999999999988776 689999999999987621 110 00000 0000
Q ss_pred cCccccCCC---CccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 270 RGTDYNTAD---GTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 270 ~g~~~~~~~---g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
.. .. ......+.+++|+|+++++++... ....|+++++.+|...+
T Consensus 227 ~~-----~~~~~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 227 GG-----ARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAA 275 (277)
T ss_dssp CC-----HHHHHHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGS
T ss_pred Hh-----hhhhhhccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchhc
Confidence 00 00 011234788999999999998753 23345899998775543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=182.33 Aligned_cols=228 Identities=12% Similarity=0.047 Sum_probs=166.6
Q ss_pred CCCCcEEEEEcCCCh--hHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAGY--IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
...+++|+||||+|+ ||.+++++|+++|++|++++|.. .....+.+... ..++.++.+|+++.+++.+++++
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAE---FNPAAVLPCDVISDQEIKDLFVEL 97 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGG---GCCSEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHh---cCCceEEEeecCCHHHHHHHHHHH
Confidence 345689999999977 99999999999999999999865 22233333221 24689999999999999988765
Q ss_pred ----CCCcEEEEcccccCcc---------CCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVG---------ESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~---------~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~ 186 (393)
.++|+||||||+.... ....+....+++|+.++.++++++... +..++|++||...+..
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----- 172 (280)
T 3nrc_A 98 GKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA----- 172 (280)
T ss_dssp HHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSC-----
T ss_pred HHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccC-----
Confidence 3799999999976431 233455668899999999999988653 3469999999776532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+..... .............
T Consensus 173 ------~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~ 233 (280)
T 3nrc_A 173 ------MPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGI-------------SNFKKMLDYNAMV 233 (280)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGC-------------TTHHHHHHHHHHH
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcC-------------cchHHHHHHHHhc
Confidence 224678999999999999988776 689999999999988642210 1112233333332
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
.+ ...+.+++|+|+++++++... ....++++++.+|..+
T Consensus 234 ~p----------------~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 234 SP----------------LKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHC 273 (280)
T ss_dssp ST----------------TCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGGG
T ss_pred CC----------------CCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCccc
Confidence 22 123678999999999988753 2234689999877543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-22 Score=181.12 Aligned_cols=239 Identities=14% Similarity=0.040 Sum_probs=165.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC----------CCchhhhhhhhhcCCCCccEEEEccCCCHHH
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR----------GNMGAVKVLQELFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 115 (393)
...+++++||||+|+||.+++++|+++|++|++++|..+ ......+....+......+.++.+|++|.++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 456689999999999999999999999999999988422 2222223333332234678899999999999
Q ss_pred HHHHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecC
Q 016208 116 VNKIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGE 181 (393)
Q Consensus 116 ~~~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~ 181 (393)
+.+++++ .++|+||||||+..... ...+....+++|+.++.++++++. +.+ ..++|++||...+..
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~ 167 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM 167 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC
Confidence 9988765 47999999999875432 234456688999999999888754 333 468999999776533
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
. .....|+.+|...+.+.+.++.+ .|+++..++||.|..+.... ........
T Consensus 168 ~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~ 222 (277)
T 3tsc_A 168 Q-----------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSG--------------DMVTAVGQ 222 (277)
T ss_dssp C-----------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSH--------------HHHHHHHH
T ss_pred C-----------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccc--------------hhhhhhhh
Confidence 2 23568999999999999988877 58999999999998763110 11111111
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
............. ..... .+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 223 ~~~~~~~~~~~~~------~~~p~-r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 223 AMETNPQLSHVLT------PFLPD-WVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp HHHTCGGGTTTTC------CSSSC-SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccccHHHHHHhh------hccCC-CCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 1111110000000 11112 38899999999999987542 2345799997664
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=179.64 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=151.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
+++|+||||+|+||++++++|+++|+ +|++++|...... +...++.....++.++.+|+++++++.++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE---KISLECRAEGALTDTITADISDMADVRRLTT 78 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH---HHHHHHHTTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHH---HHHHHHHccCCeeeEEEecCCCHHHHHHHHH
Confidence 37899999999999999999999999 9999988532222 2222222223578899999999999988875
Q ss_pred h-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCC
Q 016208 122 E-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 122 ~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
. .++|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------- 151 (244)
T 2bd0_A 79 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKA------- 151 (244)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------
T ss_pred HHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCC-------
Confidence 4 37999999999764321 233456688899999999988874 346679999999877643
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
..+...|+.+|...|.+++.++.+ .|++++++|||.++++..... +
T Consensus 152 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---------------------------~ 200 (244)
T 2bd0_A 152 ----FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV---------------------------D 200 (244)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC---------------------------C
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc---------------------------c
Confidence 224678999999999999877654 689999999999999742210 0
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~ 303 (393)
... ...+++++|+|++++.++..+.
T Consensus 201 ------------~~~-~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 201 ------------DEM-QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp ------------STT-GGGSBCHHHHHHHHHHHHTSCT
T ss_pred ------------ccc-cccCCCHHHHHHHHHHHHhCCc
Confidence 000 1257899999999999998543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=184.19 Aligned_cols=218 Identities=16% Similarity=0.107 Sum_probs=153.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++||||||+|+||.+++++|+++|++|++++|.........+.+.. ...++.++.+|++|.+++.++++.
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG---QGFDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999998854333333333322 245789999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+||||||+..... ...+....+++|+.++.++++++.. .+ ..++|++||...+..
T Consensus 105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 174 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP---------- 174 (301)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC----------
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC----------
Confidence 38999999999764322 2334566889999999999888643 33 468999999776632
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH-----HhCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA-----ARGI 263 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 263 (393)
..+...|+.||...+.+.+.++.+ .|+++++++||.|..+- ....... ....
T Consensus 175 -~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~-------------------~~~~~~~~~~~~~~~~ 234 (301)
T 3tjr_A 175 -NAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKL-------------------VSNSERIRGADYGMSA 234 (301)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSH-------------------HHHHHHHC--------
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccc-------------------ccccccccchhhcccc
Confidence 223678999999999999888776 48999999999997652 1111110 0000
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~ 303 (393)
.+ ....+ .......+++++|+|++++.+++.+.
T Consensus 235 ~~-~~~~~------~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 235 TP-EGAFG------PLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTC
T ss_pred Ch-hhhcc------ccccccCCCCHHHHHHHHHHHHhcCC
Confidence 11 11111 22344568999999999999999753
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=181.42 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=159.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++++|||||+|+||++++++|+++|++|++++|.. ....+ ++ ...+.++.+|++|.+++.++++.
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~---~~~~~---~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG---EDVVA---DL---GDRARFAAADVTDEAAVASALDLAETM 77 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC---HHHHH---HT---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch---HHHHH---hc---CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999998832 21111 22 35789999999999999888753
Q ss_pred CCCcEEEEcccccCcc--------CCccChHHHHHHHHHHHHHHHHHHHhc------------CCcEEEEeecceeecCC
Q 016208 123 NAFDAVMHFAAVAYVG--------ESTLEPLRYYHNITSNTLVILEAMAAH------------KVKTLIYSSTCATYGEP 182 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~~------------~~~~~V~~SS~~vyg~~ 182 (393)
.++|+||||||+.... ....+....+++|+.++.++++++... +..++|++||...+...
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tl3_A 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ 157 (257)
T ss_dssp SCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC
Confidence 3899999999975321 234456778999999999999888643 33589999997766321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH
Q 016208 183 DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA 259 (393)
Q Consensus 183 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.|..+... .+.......
T Consensus 158 -----------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~~~~~ 211 (257)
T 3tl3_A 158 -----------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLA---------------SLPEEARAS 211 (257)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC------------------CHHHHHH
T ss_pred -----------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhh---------------hccHHHHHH
Confidence 13568999999999999888776 5899999999999876422 222223333
Q ss_pred HhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCccc
Q 016208 260 ARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s 319 (393)
.....+ . ...+.+++|+|++++++++.+ ...|+++++.+|..++
T Consensus 212 ~~~~~~---~------------~~r~~~p~dva~~v~~l~s~~-~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 212 LGKQVP---H------------PSRLGNPDEYGALAVHIIENP-MLNGEVIRLDGAIRMA 255 (257)
T ss_dssp HHHTSS---S------------SCSCBCHHHHHHHHHHHHHCT-TCCSCEEEESTTC---
T ss_pred HHhcCC---C------------CCCccCHHHHHHHHHHHhcCC-CCCCCEEEECCCccCC
Confidence 333222 1 023778999999999999864 3346899997775543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-22 Score=179.80 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=159.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++++||||+|+||++++++|+++|++|+++++.... ...+...++.....++.++.+|++|.+++.+++++
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAE--GAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCH--HHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999998553322 22222233333346789999999999999888754
Q ss_pred --CCCcEEEEcccccCc-cC----CccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYV-GE----STLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||.... .. ........+++|+.++.++++++...-. .++|++||...+.. +.
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------~~ 152 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG----------GG 152 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC----------CS
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC----------CC
Confidence 379999999986522 11 2233466889999999999999986632 38999999877611 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccch-HHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS-GACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+. ++++..+.||.|..+... .+. +.......
T Consensus 153 ~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~---------------~~~~~~~~~~~~--------- 208 (259)
T 3edm_A 153 PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHD---------------TFTKPEVRERVA--------- 208 (259)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccc---------------cccChHHHHHHH---------
Confidence 235789999999999999988773 399999999999876321 110 11111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
.......+.+++|+|+++++++... ....|++|++.++...+
T Consensus 209 -------~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 209 -------GATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp -------------CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC
T ss_pred -------hcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCCC
Confidence 1223345778999999999988754 22345899997775443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=182.95 Aligned_cols=228 Identities=12% Similarity=0.028 Sum_probs=163.7
Q ss_pred CCCcEEEEEcCCCh--hHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAGY--IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
..+++|+||||+|+ ||++++++|+++|++|++++|.........+.... .+++.++.+|++|.+++.+++++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEE----LGAFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHH----HTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh----cCCceEEECCCCCHHHHHHHHHHHH
Confidence 55689999999988 99999999999999999998853211111111122 24688999999999999988764
Q ss_pred ---CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+||||||+... .....+....+++|+.++.++++++... ...++|++||...+...
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------- 177 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM------- 177 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC-------
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC-------
Confidence 379999999997641 1233455678899999999999998764 23589999997765432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.....|+.+|...+.+.+.++.+ .|+++.+++||.|..+..... .-............|
T Consensus 178 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p- 239 (293)
T 3grk_A 178 ----PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGI-------------GDFRYILKWNEYNAP- 239 (293)
T ss_dssp ----TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------CCHHHHHHHHHHHST-
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcc-------------cchHHHHHHHHhcCC-
Confidence 23679999999999999988876 589999999999988642210 111222333333222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++... ....|+++++.+|..+
T Consensus 240 ---------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 240 ---------------LRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYHV 277 (293)
T ss_dssp ---------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ---------------CCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCccc
Confidence 123678999999999988753 2334689999877543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-22 Score=179.54 Aligned_cols=230 Identities=13% Similarity=0.050 Sum_probs=165.9
Q ss_pred CCCCcEEEEEcCCCh--hHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAGY--IGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
.+.+++++||||+|+ ||.+++++|+++|++|++++|..+......+...+. . ..++.++.+|+++.+++.+++++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL-D-RNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS-S-SCCCEEEECCCSSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc-C-CCCceEEeCCCCCHHHHHHHHHHH
Confidence 456689999999998 999999999999999999988643222222222222 1 13789999999999999888765
Q ss_pred ----CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|+|||+||.... ..........+++|+.++.++++++...- ..++|++||...+..
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 154 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV------- 154 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC-------
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc-------
Confidence 379999999997641 12233456688899999999999987652 358999999776532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
......|+.+|...+.+.+.++.+ .|+++.+++||.|..+..... .-............+
T Consensus 155 ----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~~ 217 (266)
T 3oig_A 155 ----MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI-------------SDFNSILKDIEERAP 217 (266)
T ss_dssp ----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-------------TTHHHHHHHHHHHST
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-------------cchHHHHHHHHhcCC
Confidence 223678999999999999988776 589999999999987642210 111222333332222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
...+.+++|+|+++++++... ....++++++.+|..
T Consensus 218 ----------------~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (266)
T 3oig_A 218 ----------------LRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFH 254 (266)
T ss_dssp ----------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ----------------CCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeE
Confidence 123678999999999998853 223458999977744
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=179.39 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=166.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC-------------CCchhhhhhhhhcCCCCccEEEEccCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-------------GNMGAVKVLQELFPQPGQLQFIYADLG 111 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 111 (393)
....+++++||||+|+||.+++++|+++|++|++++|..+ ......+....+.....++.++.+|++
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 3456689999999999999999999999999999988622 122222222333333467899999999
Q ss_pred CHHHHHHHHhh-----CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecc
Q 016208 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTC 176 (393)
Q Consensus 112 ~~~~~~~~~~~-----~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~ 176 (393)
+++++.+++++ .++|+||||||+..... ...+....+++|+.++.++++++... + ..++|++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 99999888754 38999999999764322 23445668899999999998877532 2 4589999997
Q ss_pred eeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch
Q 016208 177 ATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS 253 (393)
Q Consensus 177 ~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
..+... .....|+.+|...+.+.+.++.+ .|+++..++||.|..+.... .
T Consensus 167 ~~~~~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----------------~ 219 (286)
T 3uve_A 167 GGLKAY-----------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHN----------------E 219 (286)
T ss_dssp GGTSCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSS----------------H
T ss_pred hhccCC-----------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccc----------------c
Confidence 765332 23568999999999999988877 68999999999998874221 0
Q ss_pred HHHHHHHhCCC--CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 254 GACFDAARGII--PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 254 ~~~~~~~~~~~--~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
. ......... +...-......+..... ..+.+++|+|+++++++... ....|+++++.+|..+
T Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 220 G-TFKMFRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSCL 285 (286)
T ss_dssp H-HHHHHCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred c-hhhhccccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCcccc
Confidence 0 000000000 00000000000001111 45789999999999998743 2334589999777543
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=179.46 Aligned_cols=218 Identities=15% Similarity=0.093 Sum_probs=152.1
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
......+++|+||||+|+||++++++|+++|++|++++|.. +.+.++ ..+.++ +|+ .+++.++++.
T Consensus 13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-------~~~~~~----~~~~~~-~D~--~~~~~~~~~~ 78 (249)
T 1o5i_A 13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRS----GHRYVV-CDL--RKDLDLLFEK 78 (249)
T ss_dssp ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHHT----CSEEEE-CCT--TTCHHHHHHH
T ss_pred HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-------HHHHhh----CCeEEE-eeH--HHHHHHHHHH
Confidence 33456778999999999999999999999999999998853 112222 256667 999 3334444433
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHH----HHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVI----LEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++ ++.+++.+.+++|++||...+...
T Consensus 79 ~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 147 (249)
T 1o5i_A 79 VKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI----------- 147 (249)
T ss_dssp SCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred hcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC-----------
Confidence 38999999999764322 2234566788999886655 455556677899999998877432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH-HHhCCCCceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD-AARGIIPGLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+.++... ........ ......|
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~p---- 208 (249)
T 1o5i_A 148 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVK---------------ELLSEEKKKQVESQIP---- 208 (249)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHH---------------HHSCHHHHHHHHTTST----
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCccc---------------ccchhhHHHHHHhcCC----
Confidence 23578999999999999888776 6899999999999987311 11111111 2222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+++++|+|+++++++.... ...++.|++.++.
T Consensus 209 ------------~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 209 ------------MRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ------------CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 2347899999999999887532 2345799997764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=181.43 Aligned_cols=246 Identities=14% Similarity=0.104 Sum_probs=166.7
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC---------CCchhhhhhhhhcCCCCccEEEEccCCCHH
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---------GNMGAVKVLQELFPQPGQLQFIYADLGDAK 114 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 114 (393)
.....+++++||||+|+||.+++++|+++|++|++++|... ......+...++.....++.++.+|++|.+
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 33566789999999999999999999999999999988532 122222333333333467899999999999
Q ss_pred HHHHHHhh-----CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc-----CCcEEEEeecceee
Q 016208 115 AVNKIFAE-----NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH-----KVKTLIYSSTCATY 179 (393)
Q Consensus 115 ~~~~~~~~-----~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~V~~SS~~vy 179 (393)
++.+++++ .++|+||||||+..... ...+....+++|+.++.++++++... +..++|++||...+
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~ 182 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL 182 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence 99888754 38999999999764432 23445678899999999998886532 35689999997765
Q ss_pred cCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCC-CCCcccccccchHH
Q 016208 180 GEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEA-PHPELREHGRISGA 255 (393)
Q Consensus 180 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~ 255 (393)
... .+...|+.+|...+.+.+.++.+ .|+++..++||.|..+......... ..... .......
T Consensus 183 ~~~-----------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~ 249 (299)
T 3t7c_A 183 RGA-----------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDL--ENPTVED 249 (299)
T ss_dssp SCC-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTS--SSCCHHH
T ss_pred cCC-----------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhh--ccchhhH
Confidence 332 23578999999999999988877 4899999999999887422100000 00000 0000000
Q ss_pred HHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 256 CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
........ .... ..+..++|+|+++++++.... ...|+++++.+|..
T Consensus 250 ~~~~~~~~--------------~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 250 FQVASRQM--------------HVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHHHH--------------SSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHhhhh--------------cccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCcc
Confidence 00000000 0001 347789999999999987542 23458999977754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=181.31 Aligned_cols=223 Identities=16% Similarity=0.087 Sum_probs=157.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
++|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|.+++.+++++ .+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999998854322222222222 134688999999999999888853 28
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+|||+||...... ...+....+++|+.++.++++++.. .+ .+++|++||...+... .+
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------~~ 148 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN-----------PE 148 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----------TT
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-----------CC
Confidence 999999999754321 2234456888999998887776653 34 5799999997654321 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchH-----------HHHHHHh
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISG-----------ACFDAAR 261 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 261 (393)
...|+.+|...+.+.+.++.+ .|+++++++||.+.++... .... .......
T Consensus 149 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
T 1geg_A 149 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA---------------EIDRQVSEAAGKPLGYGTAEFA 213 (256)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH---------------HHHHHHHHHHTCCTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh---------------hhhhhccccccCChHHHHHHHH
Confidence 568999999999999988765 5899999999999875210 0000 0011111
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...| ...+.+++|+|+++++++..+. ...++++++.+|..
T Consensus 214 ~~~p----------------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 214 KRIT----------------LGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp TTCT----------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred hcCC----------------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 1111 2347899999999999987532 23457898876643
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=187.15 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=151.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--CCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--AFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d 126 (393)
||+|+||||+|+||++++++|+++|++|++++|...... . . +.+|+++.+++.+++++. ++|
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~--~-~~~Dl~~~~~v~~~~~~~~~~id 64 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI-------------A--D-LSTAEGRKQAIADVLAKCSKGMD 64 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------------C--C-TTSHHHHHHHHHHHHTTCTTCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc-------------c--c-cccCCCCHHHHHHHHHHhCCCCC
Confidence 678999999999999999999999999999988543221 0 1 558999999999998643 579
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCC------------
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITES------------ 190 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~------------ 190 (393)
+|||+||.... .......+++|+.++.++++++. +.+.+++|++||...+......+..+.
T Consensus 65 ~lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 1fjh_A 65 GLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp EEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred EEEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhh
Confidence 99999997642 23478899999999999988886 445679999999888732211111100
Q ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhC
Q 016208 191 -----TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262 (393)
Q Consensus 191 -----~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
.+..+...|+.+|...+.+++.++.+ .|+++++++||.+.++..... +..........
T Consensus 142 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--------------~~~~~~~~~~~ 207 (257)
T 1fjh_A 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG--------------LQDPRYGESIA 207 (257)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------------------
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh--------------ccchhHHHHHH
Confidence 12234568999999999999988776 689999999999988642210 00000000000
Q ss_pred CCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 263 ~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
. + ......+++++|+|+++++++..+. ...++.|++.++..
T Consensus 208 ~---~-----------~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 208 K---F-----------VPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGID 249 (257)
T ss_dssp ----C-----------CCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred h---c-----------ccccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 0 0 0111247899999999999987542 22457888876643
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=178.02 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=159.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC---
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--- 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--- 123 (393)
.|+++|||||+|+||++++++|++ .|+.|++++|..... ...+.++.+|+++.+++.++++..
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 69 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-------------AENLKFIKADLTKQQDITNVLDIIKNV 69 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-------------CTTEEEEECCTTCHHHHHHHHHHTTTC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-------------cccceEEecCcCCHHHHHHHHHHHHhC
Confidence 468999999999999999999999 789999988754322 146789999999999999888432
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
++|+||||||+..... ...+....+++|+.++.++++++...-. .++|++||...+... .+..
T Consensus 70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----------~~~~ 138 (244)
T 4e4y_A 70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK-----------PNSF 138 (244)
T ss_dssp CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC-----------TTBH
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC-----------CCCc
Confidence 7999999999864322 2334566889999999999999876522 489999997766332 2356
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHH-----------HHHHHhCC
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGA-----------CFDAARGI 263 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 263 (393)
.|+.+|...+.+.+.++.+ .|+++.+++||.|..+... .+... ........
T Consensus 139 ~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 203 (244)
T 4e4y_A 139 AYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR---------------NLIQKYANNVGISFDEAQKQEEKE 203 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHH---------------HHHHHHHHHHTCCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhH---------------HHHHhhhhhcCCCHHHHHHHHhhc
Confidence 8999999999999998874 6899999999999875210 11111 11222222
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.....+.+++|+|+++++++.... ...++++++.+|.
T Consensus 204 ----------------~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 204 ----------------FPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGY 241 (244)
T ss_dssp ----------------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ----------------CCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCc
Confidence 123457899999999999997543 2345799997764
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=181.65 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=156.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|... ...+...++ ..++.++.+|++|++++.++++.
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA---AGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999987432 222222222 24788999999999998887754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHH----HHHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILE----AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~----~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++..+.+ .+++.+ +++|++||...+...
T Consensus 78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 145 (253)
T 1hxh_A 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI----------- 145 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC-----------
Confidence 36899999999764322 223456678899887666555 444556 799999998776432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---C--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH-HhCCCCce
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---T--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA-ARGIIPGL 267 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 267 (393)
.+...|+.+|...|.+.+.++.+ . |++++++|||.++++.......+ ... .. .....+
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~----------~~~----~~~~~~~~~-- 209 (253)
T 1hxh_A 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK----------GVS----KEMVLHDPK-- 209 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT----------TCC----HHHHBCBTT--
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccch----------hhh----HHHHhhhhc--
Confidence 23568999999999999988766 3 89999999999998631100000 000 00 111000
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
......+.+++|+|+++++++..+. ...++.+++.++.
T Consensus 210 -----------~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 210 -----------LNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp -----------TBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred -----------cCccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 1112347899999999999987542 2345789887664
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=180.84 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=158.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~-- 122 (393)
+.+++|+||||+|+||++++++|+++|++ |++++|.... ...+.+.+... ..++.++.+|++|. +++.+++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHHH
Confidence 44589999999999999999999999997 9988885421 22333333222 24688999999998 888777653
Q ss_pred ---CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc----C---CcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH----K---VKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||... ..+....+++|+.++.++++++... + ..++|++||...+...
T Consensus 80 ~~~g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 145 (254)
T 1sby_A 80 DQLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI---------- 145 (254)
T ss_dssp HHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC----------
T ss_pred HhcCCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC----------
Confidence 38999999999752 4567889999999999999988643 1 3579999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...|.+.+.++.+ .|+++++++||.+.++....... . . .....+ ......
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~---~--~----~~~~~~-~~~~~~------ 208 (254)
T 1sby_A 146 -HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNS---W--L----DVEPRV-AELLLS------ 208 (254)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCC---G--G----GSCTTH-HHHHTT------
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccch---h--h----hhhHHH-HHHHhc------
Confidence 23568999999999999988776 68999999999998863110000 0 0 000000 111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
..+.+++|+|++++.+++.... +++|++.++
T Consensus 209 -------------~~~~~~~dvA~~i~~~~~~~~~--G~~~~v~gG 239 (254)
T 1sby_A 209 -------------HPTQTSEQCGQNFVKAIEANKN--GAIWKLDLG 239 (254)
T ss_dssp -------------SCCEEHHHHHHHHHHHHHHCCT--TCEEEEETT
T ss_pred -------------CCCCCHHHHHHHHHHHHHcCCC--CCEEEEeCC
Confidence 1234899999999999875443 479999776
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=181.97 Aligned_cols=235 Identities=14% Similarity=0.101 Sum_probs=164.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||++++++|+++|++|++++|..... .+...++.....++.++.+|++|++++.+++++
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEV---EEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHH---HHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999998854322 223333333346788999999999999888765
Q ss_pred --CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||+... . ....+....+++|+.++.++++++ ++.+..++|++||...+...
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~--------- 172 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF--------- 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC---------
Confidence 389999999997532 1 123345668899999999998887 55566799999997654211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+...... .... ... ..+ ..
T Consensus 173 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-------------~~~~--~~~--~~~-~~ 234 (283)
T 3v8b_A 173 TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTK-------------LRHE--EET--AIP-VE 234 (283)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTT-------------BCCH--HHH--SCC-CB
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccc-------------cccc--hhh--hhh-hh
Confidence 1224678999999999999998887 5799999999999877432110 0000 000 000 00
Q ss_pred EcCccccCCCCccc--cccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCV--RDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~--~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
... ..... ..+..++|+|+++++++... ....|+++++.+|.
T Consensus 235 ~~~------~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 235 WPK------GQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGGQ 279 (283)
T ss_dssp CTT------CSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred hhh------hcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcCc
Confidence 000 11111 34678999999999988743 22345799887663
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-22 Score=178.99 Aligned_cols=207 Identities=17% Similarity=0.100 Sum_probs=150.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
..+.+++||||||+|+||.+++++|+++|++|++++|.........+.+.. ....+.++.+|+++.+++.++++.
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA---AGGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---hCCceeEEEecCCCHHHHHHHHHHHH
Confidence 345668999999999999999999999999999998854333322233322 245788999999999999888754
Q ss_pred ---CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+|||+||..... ....+....+++|+.++.++++++. +.+..++|++||...+..
T Consensus 102 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 172 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNP--------- 172 (262)
T ss_dssp HHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCC---------
T ss_pred HhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCC---------
Confidence 3799999999973211 2234456688999999998888764 356679999999776532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+++.++.+ .|+++.+++||.|..+... . ...
T Consensus 173 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~--------~~~----- 222 (262)
T 3rkr_A 173 --VADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGV---------------G--------LSA----- 222 (262)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------------------------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccc---------------c--------ccc-----
Confidence 234678999999999999988766 6899999999998765211 0 000
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
......+++.+|+|+++++++.....
T Consensus 223 -----------~~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 223 -----------KKSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp -----------------CCCHHHHHHHHHHHHTCCTT
T ss_pred -----------ccccccCCCHHHHHHHHHHHhcCccc
Confidence 01123367899999999999986543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=180.47 Aligned_cols=232 Identities=17% Similarity=0.058 Sum_probs=160.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||++++++|+++|++|++++|.... ..+...++ .++.++.+|++|.+++.+++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG---GRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRR 79 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh----cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999874322 11111222 3578899999999999888754
Q ss_pred -CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+||||||..... ....+....+++|+.++.++++++... +.+++|++||...+...
T Consensus 80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (270)
T 1yde_A 80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ----------- 148 (270)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC-----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCC-----------
Confidence 3799999999975421 122335668899999999998887531 24699999997554221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.++++......... ......+.. .....|
T Consensus 149 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~--------~~~~~~~~~-~~~~~p----- 214 (270)
T 1yde_A 149 AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALM--------PDPRASIRE-GMLAQP----- 214 (270)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTS--------SSHHHHHHH-HHHTST-----
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcc--------cchHHHHHH-HhhcCC-----
Confidence 12568999999999999998765 6899999999999986310000000 000000110 111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHH
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK 321 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~ 321 (393)
...+.+.+|+|+++++++.......++++++.++..+...
T Consensus 215 -----------~~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~ 254 (270)
T 1yde_A 215 -----------LGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYG 254 (270)
T ss_dssp -----------TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC-
T ss_pred -----------CCCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccC
Confidence 1236789999999999887643334679999887655543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=178.61 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=156.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++|+||||+|+||++++++|+++|++|++++|..... ....+.+|++|.+++.++++. .
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN---------------ADHSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------SSEEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc---------------cccceEEEeCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999865432 223577899999999888765 2
Q ss_pred CCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
++|+|||+||+..... ...+....+++|+.++.++++++...- ..++|++||...+.. ..+.
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~ 155 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR-----------TSGM 155 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC-----------CTTB
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC-----------CCCC
Confidence 6899999999753321 233456688899999999999987642 248999999876632 2346
Q ss_pred ChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
..|+.+|...+.+.+.++.+ .++++.+++||.|..+. ......
T Consensus 156 ~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~-----------------------~~~~~~--------- 203 (251)
T 3orf_A 156 IAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT-----------------------NRKYMS--------- 203 (251)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH-----------------------HHHHCT---------
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc-----------------------hhhhcc---------
Confidence 78999999999999998887 57999999999987641 111111
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhc-C-CCCCcceEEecCCCcc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALAN-A-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~-~-~~~~~~~yni~~~~~~ 318 (393)
......+++++|+|++++.++.. . ....|+.+++..++..
T Consensus 204 -------~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 204 -------DANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp -------TSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTE
T ss_pred -------cccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCCcc
Confidence 22244578999999999999987 2 2234578988776543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=175.02 Aligned_cols=220 Identities=14% Similarity=0.112 Sum_probs=157.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|... ...+...++ ++.++.+|++|++++.++++.
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG---PLREAAEAV-----GAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHHc-----CCEEEEecCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999988432 111111221 378899999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++.. .+.+++|++||...++.
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------ 142 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN------------ 142 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC------------
Confidence 36999999999764322 2234556788999999999887754 35679999999873322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+..+... .+............|
T Consensus 143 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p----- 202 (245)
T 1uls_A 143 LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA---------------KVPEKVREKAIAATP----- 202 (245)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS---------------SSCHHHHHHHHHTCT-----
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchh---------------hcCHHHHHHHHhhCC-----
Confidence 12568999999999999887766 5899999999999776321 111112222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
...+++++|+|+++++++.... ...++.+++.++..
T Consensus 203 -----------~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 203 -----------LGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (245)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred -----------CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 1126789999999999887532 23457888876643
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=184.48 Aligned_cols=232 Identities=14% Similarity=0.059 Sum_probs=162.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++++||||+|+||++++++|+++|++|++++|..+......+...++.....++.++.+|++|.+++.+++++
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999998865554444444444444456789999999999999988754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+||||||+..... ...+....+++|+.++.++++++... +..++|++||...+....
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~----------- 156 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG----------- 156 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC-----------
Confidence 37999999999764432 23344567889999999999999865 346899999977664322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+.+.++.+ .|+++..++||.|..+.... ...........
T Consensus 157 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~---------- 212 (262)
T 3ksu_A 157 FYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYG--------------QETKESTAFHK---------- 212 (262)
T ss_dssp CCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHT--------------CC-------------------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc--------------cCchHHHHHHH----------
Confidence 2568999999999999998887 48999999999986542100 00000000000
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
.......+.+++|+|+++++++.......|+.+++.++...
T Consensus 213 ------~~~~~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~ 253 (262)
T 3ksu_A 213 ------SQAMGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTT 253 (262)
T ss_dssp ---------CCCCSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCC
T ss_pred ------hcCcccCCCCHHHHHHHHHHHcCCCCCccCCEEEECCCccC
Confidence 11223346788999999999987633335689999766543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-22 Score=179.70 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=162.0
Q ss_pred CCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+.+++|+||||+ |+||++++++|+++|++|++++|... .....+.+.... +.+.++.+|+++++++.++++.
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHH
Confidence 445899999999 99999999999999999999998653 222233332211 3478899999999999888754
Q ss_pred ---CCCcEEEEcccccCc--------cCCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYV--------GESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~--------~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||+... .....+....+++|+.++.++++++... ...++|++||...+..
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------- 151 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY-------- 151 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB--------
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC--------
Confidence 279999999997643 1223445678899999999999999865 1258999999665422
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++++++||.|.++..... .........+....|
T Consensus 152 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p- 214 (275)
T 2pd4_A 152 ---MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-------------ADFRMILKWNEINAP- 214 (275)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHST-
T ss_pred ---CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc-------------cccHHHHHHHHhcCC-
Confidence 123568999999999999988776 489999999999988642100 011222222222222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++... ....++.|++.++.
T Consensus 215 ---------------~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 215 ---------------LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250 (275)
T ss_dssp ---------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---------------cCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 112568999999999998743 22245788887664
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-22 Score=179.62 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=165.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|.+++.+++++
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG---VGGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999855443333333332 245789999999999999988864
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhc----C-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAH----K-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+||||||+...... ..+....+++|+.++.++++++... + ..++|++||...+...
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~--------- 176 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN--------- 176 (276)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC---------
Confidence 289999999998754322 2334556789999999988877532 3 2689999997655321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+... .. ...........|
T Consensus 177 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~---------------~~-~~~~~~~~~~~p--- 237 (276)
T 3r1i_A 177 IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVE---------------PL-ADYHALWEPKIP--- 237 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTG---------------GG-GGGHHHHGGGST---
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccc---------------cc-hHHHHHHHhcCC---
Confidence 1124578999999999999998877 6899999999999876421 11 112222222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 238 -------------~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 238 -------------LGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp -------------TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -------------CCCCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 2236788999999999987532 2345799997664
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=177.05 Aligned_cols=166 Identities=17% Similarity=0.080 Sum_probs=123.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+++|+||||+|+||++++++|+++|++|++++|.... ..+...++ .++.++.+|+.+.+++.++++. .
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKR---LQALAAEL----EGALPLPGDVREEGDWARAVAAMEEAFG 77 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHS----TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHh----hhceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999884321 11112222 3688999999999998887754 3
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHH----HHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVIL----EAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll----~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||...... ...+....+++|+.++.+++ +.+++.+.+++|++||...+.. ..+
T Consensus 78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~ 146 (234)
T 2ehd_A 78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNP-----------FKG 146 (234)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSC-----------CTT
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCC-----------CCC
Confidence 7999999999764322 23345668889999987554 4455667789999999766532 234
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+.+.++.+ .|++++++|||.+..+
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 186 (234)
T 2ehd_A 147 GAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTG 186 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCC
Confidence 678999999999988887665 5899999999998764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=177.55 Aligned_cols=226 Identities=18% Similarity=0.143 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++++||||+|+||++++++|+++|++|+++++.... ...+...++.....++.++.+|++|.+++.+++++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE--RAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998764322 11222222222245788999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++... +..++|++||..... .+..+
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~----------~~~~~ 176 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL----------VPWPG 176 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC----------CCSTT
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc----------CCCCC
Confidence 28999999999764332 23345668889999999999998765 346899998854321 12234
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++.+++||.|..+..... .... .......|
T Consensus 177 ~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~------------~~~~----~~~~~~~~------- 233 (271)
T 3v2g_A 177 ISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD------------GDHA----EAQRERIA------- 233 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS------------CSSH----HHHHHTCT-------
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc------------chhH----HHHHhcCC-------
Confidence 678999999999999988876 489999999999988753210 0111 11222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++... ....|+++++.+|.
T Consensus 234 ---------~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 234 ---------TGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ---------CCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcCc
Confidence 123678999999999988643 23345799887653
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=182.75 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=164.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC---------CchhhhhhhhhcCCCCccEEEEccCCCHHHH
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---------NMGAVKVLQELFPQPGQLQFIYADLGDAKAV 116 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 116 (393)
...+++||||||+|+||+++++.|+++|++|++++|.... .....+....+......+.++.+|++|.+++
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL 122 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 3456899999999999999999999999999999875221 1222222222222346788999999999999
Q ss_pred HHHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cC-CcEEEEeecceeecCC
Q 016208 117 NKIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HK-VKTLIYSSTCATYGEP 182 (393)
Q Consensus 117 ~~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~~V~~SS~~vyg~~ 182 (393)
.+++++ .++|+||||||+..... ...+....+++|+.++.++++++.. .+ ..++|++||...+...
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~ 202 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGA 202 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCC
Confidence 888764 38999999999765432 2344566889999999998888743 32 4589999997766332
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH
Q 016208 183 DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA 259 (393)
Q Consensus 183 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|.++... .......
T Consensus 203 -----------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-----------------~~~~~~~ 254 (317)
T 3oec_A 203 -----------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMAL-----------------NEKLLKM 254 (317)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH-----------------CHHHHHH
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcccc-----------------chhhhhh
Confidence 23578999999999999998877 5899999999999886310 0011111
Q ss_pred HhCCCCceeE--cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 260 ARGIIPGLKI--RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 260 ~~~~~~~~~~--~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
.......... ....+.. .......+++++|+|+++++++.... ...|+++++.+|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 255 FLPHLENPTREDAAELFSQ-LTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HCTTCSSCCHHHHHHHHTT-TCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred hhhhccccchhHHHHHHhh-hccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 1100000000 0000000 01111568899999999999887432 23458999977753
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=178.45 Aligned_cols=176 Identities=14% Similarity=0.100 Sum_probs=134.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCC---CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
....|++|+||||+|+||++++++|+++| ++|++++|........ +.+... ..++.++.+|+++.+++.++++
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~ 92 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN---HSNIHILEIDLRNFDAYDKLVA 92 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH---CTTEEEEECCTTCGGGHHHHHH
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc---CCceEEEEecCCChHHHHHHHH
Confidence 34677899999999999999999999999 9999999865443322 222221 3578999999999998888875
Q ss_pred hC-------CCcEEEEcccccC-c----cCCccChHHHHHHHHHHHHHHHHHHHhc----------C-----CcEEEEee
Q 016208 122 EN-------AFDAVMHFAAVAY-V----GESTLEPLRYYHNITSNTLVILEAMAAH----------K-----VKTLIYSS 174 (393)
Q Consensus 122 ~~-------~~d~Vi~~A~~~~-~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~----------~-----~~~~V~~S 174 (393)
.. ++|+|||+||... . .....+....+++|+.++.++++++... + ..++|++|
T Consensus 93 ~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is 172 (267)
T 1sny_A 93 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS 172 (267)
T ss_dssp HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred HHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEe
Confidence 32 7999999999765 1 1223445668889999999998888543 2 46899999
Q ss_pred cceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 175 TCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 175 S~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
|...+.... +..+...|+.+|...|.+++.++.+ .+++++++|||.|..+
T Consensus 173 S~~~~~~~~--------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 225 (267)
T 1sny_A 173 SILGSIQGN--------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 225 (267)
T ss_dssp CGGGCSTTC--------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred cccccccCC--------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecC
Confidence 987764421 1234678999999999999988776 6899999999998765
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=183.14 Aligned_cols=209 Identities=17% Similarity=0.125 Sum_probs=151.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||++++++|+++|++|++++|.... ++++. ..++.++.+|++|.+++.++++.
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~-------~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER-------LKALN--LPNTLCAQVDVTDKYTFDTAITRAEKI 84 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH-------HHTTC--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHhh--cCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999884221 11111 24788999999999999888754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+||||||+...... ..+....+++|+.++.++++++ ++.+.+++|++||...+...
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~----------- 153 (266)
T 3p19_A 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF----------- 153 (266)
T ss_dssp HCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-----------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC-----------
Confidence 389999999998644322 2334567889999999866665 45566799999998766332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+.... .............. .
T Consensus 154 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~~~--~--- 214 (266)
T 3p19_A 154 PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSH--------------TTSQQIKDGYDAWR--V--- 214 (266)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGG--------------CSCHHHHHHHHHHH--H---
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhc--------------ccchhhhHHHHhhc--c---
Confidence 23578999999999999988877 68999999999998864211 00011111111000 0
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
....+++++|+|+++++++..+..
T Consensus 215 ----------~~~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 215 ----------DMGGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp ----------HTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred ----------cccCCCCHHHHHHHHHHHHcCCCC
Confidence 112378899999999999997654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=180.25 Aligned_cols=236 Identities=16% Similarity=0.130 Sum_probs=162.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|..... ....+.+.. ...++.++.+|+++.+++.+++++
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK---NGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH---hCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998854221 111222222 235788999999999998887754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++... +..++|++||...+... ..
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------~~ 173 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA----------VP 173 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS----------CS
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCC----------CC
Confidence 37999999999764321 23445678899999999999999876 56799999997654221 11
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCC-CCCcccccccchHHHHHHHhC--CCCcee
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEA-PHPELREHGRISGACFDAARG--IIPGLK 268 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 268 (393)
+...|+.+|...+.+.+.++.+ .|+++++++||.|.++......... +.. ..........+.. ..|
T Consensus 174 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p--- 245 (283)
T 1g0o_A 174 KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNG-----ENLSNEEVDEYAAVQWSP--- 245 (283)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTC-----TTCCHHHHHHHHHHHSCT---
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccc-----cccCHHHHHHHHhhcCCC---
Confidence 3678999999999999988765 5899999999999876211000000 000 0000111111111 111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...++++++.+|.
T Consensus 246 -------------~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 246 -------------LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 2236789999999999987532 2345789887663
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=181.68 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=161.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+|+++||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|++|.+++.+++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL---LAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999885322 22222222 14688999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++...- ..++|++||...+ .. .+
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~-----------~~ 145 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GA-----------FG 145 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CH-----------HH
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CC-----------CC
Confidence 37899999999764322 122345678899999999999987642 3599999998776 21 12
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++++++||.+.++... .+.+..........|
T Consensus 146 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~p------- 203 (263)
T 2a4k_A 146 LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA---------------GLPPWAWEQEVGASP------- 203 (263)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT---------------TSCHHHHHHHHHTST-------
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhh---------------hcCHHHHHHHHhcCC-------
Confidence 468999999999998887765 5899999999999887422 111222222222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|+++++++.... ...++.+++.++..+
T Consensus 204 ---------~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 204 ---------LGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRSI 241 (263)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred ---------CCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCccc
Confidence 1236789999999999987532 234578989777543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=182.46 Aligned_cols=176 Identities=17% Similarity=0.117 Sum_probs=133.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++||||||+|+||++++++|+++|++|++++|.........+.+.... ....+.++.+|+++++++.++++.
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC-CCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 455899999999999999999999999999999885432222222222211 124578899999999999888753
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHH----HHHHHHHHHhcCC--cEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSN----TLVILEAMAAHKV--KTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~----~~~ll~~~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||...... ...+....+++|+.+ ++.+++.+++.+. +++|++||...+.. .
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~---------~ 179 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------L 179 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------C
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc---------C
Confidence 37999999999764322 233456688899999 7777888887775 79999999876632 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGS 232 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~ 232 (393)
+..+...|+.+|...+.+.+.++.+ .++++++++||.|.++
T Consensus 180 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 225 (279)
T 1xg5_A 180 PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ 225 (279)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccch
Confidence 2234578999999999988877654 5799999999999875
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=183.81 Aligned_cols=204 Identities=11% Similarity=0.077 Sum_probs=150.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|+++.+++.+++++
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh---cCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999998854322222222222 235789999999999999888754
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||....... ..+....+++|+.++.++++++ .+.+.+++|++||...+...
T Consensus 105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 174 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------- 174 (272)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH----------
T ss_pred HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC----------
Confidence 279999999997643321 2234567889999977766665 44567899999998776431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhC------CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKTT------NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~~------g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.+...|+.+|...|.+++.++.+. |++++++|||.+.++... . .
T Consensus 175 -~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~---------------~-------------~- 224 (272)
T 1yb1_A 175 -PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK---------------N-------------P- 224 (272)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT---------------C-------------T-
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc---------------c-------------c-
Confidence 235689999999999999887753 899999999999876311 0 0
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
......+++++|+|++++.++..+..
T Consensus 225 ------------~~~~~~~~~~~dva~~i~~~~~~~~~ 250 (272)
T 1yb1_A 225 ------------STSLGPTLEPEEVVNRLMHGILTEQK 250 (272)
T ss_dssp ------------HHHHCCCCCHHHHHHHHHHHHHTTCS
T ss_pred ------------cccccCCCCHHHHHHHHHHHHHcCCC
Confidence 00112367899999999999986543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=176.78 Aligned_cols=208 Identities=16% Similarity=0.072 Sum_probs=151.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||.+++++|+++|++|++++|.........+.+........++.++.+|+++.+++.+++++
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999998865443444444443322225788999999999998888754
Q ss_pred --CCCcEEEEcccccCccCC---ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES---TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||+...... ..+....+++|+.++..+++++ ++.+..++|++||...+.. .
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 152 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG-----------F 152 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCC-----------C
Confidence 379999999998643322 2334567889999999888887 3456679999999766532 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.+..+. .......
T Consensus 153 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~-----------------------~~~~~~~------- 202 (250)
T 3nyw_A 153 ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM-----------------------AKKAGTP------- 202 (250)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH-----------------------HHHTTCC-------
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch-----------------------hhhcCCC-------
Confidence 23679999999999999988776 48999999999986531 1111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK 303 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~ 303 (393)
.....+++++|+|+++++++..+.
T Consensus 203 ---------~~~~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 203 ---------FKDEEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp ---------SCGGGSBCHHHHHHHHHHHHTSCT
T ss_pred ---------cccccCCCHHHHHHHHHHHHcCCC
Confidence 112347899999999999998654
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=174.81 Aligned_cols=215 Identities=19% Similarity=0.179 Sum_probs=155.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+|+|+||||+|+||++++++|+++|++|++++|.... .. .++ ++.++.+|+++ +++.+++++ .
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~---~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AA---QSL-----GAVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HH---HHH-----TCEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HH---Hhh-----CcEEEecCCch-HHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999999885422 11 222 27889999998 766665532 4
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|+|||+||...... ...+....+++|+.++.++++++. +.+.+++|++||...+.... ..+
T Consensus 70 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------~~~ 140 (239)
T 2ekp_A 70 GLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG---------PVP 140 (239)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT---------TSC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC---------CCC
Confidence 7999999999764322 233456688899999988887773 45678999999987764321 134
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccc--hHHHHHHHhCCCCceeEc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRI--SGACFDAARGIIPGLKIR 270 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 270 (393)
...|+.+|...+.+.+.++.+ .|++++++|||.+.++... .. .+..........|
T Consensus 141 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---------------~~~~~~~~~~~~~~~~p----- 200 (239)
T 2ekp_A 141 IPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTL---------------PLRQNPELYEPITARIP----- 200 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH---------------HHHTCHHHHHHHHTTCT-----
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhh---------------ccccCHHHHHHHHhcCC-----
Confidence 678999999999999988776 4899999999999876311 00 0112222222222
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.+++|+|+++++++.... ...++.+++.++
T Consensus 201 -----------~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 201 -----------MGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp -----------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -----------CCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence 1237899999999999887532 234578888765
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=182.19 Aligned_cols=182 Identities=17% Similarity=0.106 Sum_probs=136.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+++|+||||+|+||++++++|++ +|++|++++|.........+.+.. ...++.++.+|+++.+++.+++++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHh---cCCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999 999999998854322222222322 135788999999999999888754
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCC-C----------C
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEP-D----------K 184 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~-~----------~ 184 (393)
.++|+|||+||....... ..+....+++|+.++.++++++.... .+++|++||...+... . .
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~ 159 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 159 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccc
Confidence 289999999997643222 23456688999999999999998762 2489999998776320 0 0
Q ss_pred CCCCCCC-------------------CCCCCChHHHHHHHHHHHHHHHHhh-------CCCcEEEEeeccccCC
Q 016208 185 MPITEST-------------------PQKPINPYGKAKKMSEDIIIDFSKT-------TNMAVMILRYFNVIGS 232 (393)
Q Consensus 185 ~~~~E~~-------------------~~~p~~~Y~~sK~~~E~~~~~~~~~-------~g~~~~ilRp~~v~G~ 232 (393)
..++|++ +..|...|+.+|...|.+++.++.+ .|+++++++||.|..+
T Consensus 160 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~ 233 (276)
T 1wma_A 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 233 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccC
Confidence 1222221 2235589999999999999888776 4899999999998775
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=179.50 Aligned_cols=224 Identities=18% Similarity=0.147 Sum_probs=161.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++++||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|++|.+++.+++++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEG---AKAAAASI---GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999998774322 22222333 35788999999999999888754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcC-CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHK-VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|+|||+||+..... ...+....+++|+.++.+++++ +++.+ ..++|++||...+...
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 147 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT--------- 147 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC---------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC---------
Confidence 37999999999764422 2334566889999999998887 44544 5799999997766432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.|..+..... +. .....+.... .+
T Consensus 148 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----~~-------~~~~~~~~~~---~~--- 208 (247)
T 3rwb_A 148 --PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKAS----PH-------NEAFGFVEML---QA--- 208 (247)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS----GG-------GGGHHHHHHH---SS---
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCcccccc----Ch-------hHHHHHHhcc---cc---
Confidence 23678999999999999988877 689999999999987531100 00 1111111110 11
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...|+++++.+|.
T Consensus 209 -------------~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 209 -------------MKGKGQPEHIADVVSFLASDDARWITGQTLNVDAGM 244 (247)
T ss_dssp -------------SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -------------cCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1235689999999999887542 2345799887663
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=176.59 Aligned_cols=240 Identities=12% Similarity=0.002 Sum_probs=163.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||++++++|+++|++|++++|.........+.+..... ..++.++.+|++|.+++.++++.
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP-GARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999998854333333333332111 23588999999999998887754
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++.. .+..++|++||...+...
T Consensus 84 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (265)
T 3lf2_A 84 TLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE---------- 153 (265)
T ss_dssp HHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC----------
Confidence 37999999999764422 2334566888999999999888753 345689999997665322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.|..+............ ..-............
T Consensus 154 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----- 222 (265)
T 3lf2_A 154 -PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREER-----ELDWAQWTAQLARNK----- 222 (265)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC-----------CHHHHHHHHHHHT-----
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhh-----ccCHHHHHHHHhhcc-----
Confidence 23678999999999999988876 4899999999999875211000000000 000011111111110
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
......+.+++|+|+++++++... ....|+++++.+|.
T Consensus 223 ---------~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 223 ---------QIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGL 261 (265)
T ss_dssp ---------TCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSC
T ss_pred ---------CCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCC
Confidence 011234678999999999998743 23345899887664
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=175.42 Aligned_cols=206 Identities=14% Similarity=0.129 Sum_probs=152.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+++|+||||+|+||++++++|+++|++|++++|...... ....++.+|+++.+++.+++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999998654321 2456778999999998887753
Q ss_pred --CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... ...++|++||...+.. .
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 137 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP-----------T 137 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC-----------C
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC-----------C
Confidence 38999999999764322 12345668889999999999998764 2258999999877632 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC-----CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTT-----NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.+...|+.+|...+.+.+.++.+. |+++++++||.+.++. .. .....
T Consensus 138 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~-------------------~~----~~~~~----- 189 (236)
T 1ooe_A 138 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-------------------NR----KWMPN----- 189 (236)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-------------------HH----HHSTT-----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc-------------------hh----hcCCC-----
Confidence 236789999999999999988764 4999999999987751 11 11110
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC--CCCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA--KPGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~--~~~~~~~yni~~~~ 316 (393)
.....+++.+|+|++++.++..+ ....++.+++.++.
T Consensus 190 -----------~~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 190 -----------ADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp -----------CCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred -----------ccccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence 01223578899999999777422 22235788876553
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=174.78 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=158.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC--CCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL--GDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~-- 122 (393)
..+++++||||+|+||++++++|+++|++|++++|.........+.+.... ...+.++.+|+ ++.+++.++++.
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET--GRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCCceEEEEecccCCHHHHHHHHHHHH
Confidence 556899999999999999999999999999999885433333333333221 13788999999 999988877754
Q ss_pred ---CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+||||||+.... ....+....+++|+.++.++++++ ++.+..++|++||...+..
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 158 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQG--------- 158 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSC---------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccC---------
Confidence 3799999999975321 122334568899999999998887 4556679999999766532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhCC--CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKTTN--MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..+...|+.+|...+.+.+.++.+.+ +++..+.||.|..+ + .......
T Consensus 159 --~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~-------------------~----~~~~~~~----- 208 (252)
T 3f1l_A 159 --RANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA-------------------M----RASAFPT----- 208 (252)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH-------------------H----HHHHCTT-----
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc-------------------h----hhhhCCc-----
Confidence 22357899999999999999888743 89999999887653 1 1111111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcccHH
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVK 321 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~ 321 (393)
.....+.+++|+++++++++.... ...|+.+++.+|...++.
T Consensus 209 -----------~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 209 -----------EDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp -----------CCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC------
T ss_pred -----------cchhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCCC
Confidence 112346788999999999987542 334589999888766554
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=178.78 Aligned_cols=218 Identities=13% Similarity=0.133 Sum_probs=148.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...++++|||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|++|.+++.+++++
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDA---LQETAAEI---GDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---TSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885322 22222232 25789999999999999988854
Q ss_pred --CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHh----cC--CcEEEEeecceeecCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAA----HK--VKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+||||||+.... ....+....+++|+.++.++++++.. .+ ..++|++||...+..
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-------- 170 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP-------- 170 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC--------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC--------
Confidence 2899999999975431 12334567889999998887776643 33 359999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+... .+... .....
T Consensus 171 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~---------------~~~~~----~~~~~-- 226 (272)
T 4dyv_A 171 ---RPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQ---------------KMKAG----VPQAD-- 226 (272)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------------
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhh---------------hhccc----chhhh--
Confidence 224678999999999999988876 5899999999999876321 10000 00000
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEe
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNV 312 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni 312 (393)
.......+++++|+|+++++++..+.......+.+
T Consensus 227 -----------~~~~~~~~~~pedvA~~v~fL~s~~~~~~~~~i~i 261 (272)
T 4dyv_A 227 -----------LSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTI 261 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHSCTTSCCCEEEE
T ss_pred -----------hcccccCCCCHHHHHHHHHHHhCCCCcCccceEEE
Confidence 01112347899999999999999765443234434
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=177.43 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=131.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|......... .++.....++.++.+|+++++++.++++.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAE---ASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988542222222 22222235688999999999998877754
Q ss_pred -CCCcEEEEccccc-Ccc----CCccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVA-YVG----ESTLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~-~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||.. ... ....+....+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 151 (262)
T 1zem_A 82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP---------- 151 (262)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC----------
T ss_pred hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC----------
Confidence 3899999999975 221 12334566888999999998887754 356799999997766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+
T Consensus 152 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 152 -PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 12568999999999998887765 5899999999988654
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=174.37 Aligned_cols=210 Identities=16% Similarity=0.099 Sum_probs=155.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
..+++++||||+|+||++++++|+++|++|++++|... +|++|++++.+++++ .++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~i 60 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGAF 60 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCCC
Confidence 34589999999999999999999999999999877321 799999999988865 479
Q ss_pred cEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHHhcC--CcEEEEeecceeecCCCCCCCCCCCCCCCCCh
Q 016208 126 DAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMAAHK--VKTLIYSSTCATYGEPDKMPITESTPQKPINP 198 (393)
Q Consensus 126 d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~ 198 (393)
|++|||||..... ....+....+++|+.++.++++++...- ..++|++||...+.. ..+...
T Consensus 61 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------~~~~~~ 129 (223)
T 3uce_A 61 DHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV-----------VANTYV 129 (223)
T ss_dssp EEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC-----------CTTCHH
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC-----------CCCchH
Confidence 9999999976221 2233456678899999999999997652 248999999876543 224678
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 199 YGKAKKMSEDIIIDFSKTTN-MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 199 Y~~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
|+.+|...+.+.+.++.+.+ +++..++||.+..+...... ......+........|
T Consensus 130 Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~-----------~~~~~~~~~~~~~~~~------------ 186 (223)
T 3uce_A 130 KAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMN-----------ADDRDAMYQRTQSHLP------------ 186 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSC-----------HHHHHHHHHHHHHHST------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcc-----------hhhHHHHHHHHhhcCC------------
Confidence 99999999999999988844 99999999999887422100 0111122222322222
Q ss_pred CCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcc
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGR 318 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~ 318 (393)
...+.+++|+|++++++++... ..++++++.+|..+
T Consensus 187 ----~~~~~~~~dvA~~~~~l~~~~~-~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 187 ----VGKVGEASDIAMAYLFAIQNSY-MTGTVIDVDGGALL 222 (223)
T ss_dssp ----TCSCBCHHHHHHHHHHHHHCTT-CCSCEEEESTTGGG
T ss_pred ----CCCccCHHHHHHHHHHHccCCC-CCCcEEEecCCeec
Confidence 2347789999999999998543 34589999877554
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=174.03 Aligned_cols=217 Identities=16% Similarity=0.113 Sum_probs=152.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-----A 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 124 (393)
|+++||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|+++.+++.+++++. +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER---LQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHH---CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999885322 22222222 146889999999999999988642 7
Q ss_pred CcEEEEcccccC-cc----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAY-VG----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~-~~----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|+||||||+.. .. ....+....+++|+.++.++++++. +.+..++|++||...+.. ..+
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-----------~~~ 143 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP-----------YAG 143 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC-----------CTT
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC-----------CCC
Confidence 999999999752 11 1233456688999999888887775 446679999999776532 223
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccC-CCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIG-SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
...|+.+|...+.+.+.++.+ .|+++.+++||.|.| +.... .+... ...... . .
T Consensus 144 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~--------------~~~~~-~~~~~~----~--~- 201 (248)
T 3asu_A 144 GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV--------------RFKGD-DGKAEK----T--Y- 201 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------------
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhh--------------cccCc-hHHHHH----H--H-
Confidence 578999999999999998876 489999999999985 32110 00000 000000 0 0
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGT 314 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~ 314 (393)
....+++++|+|+++++++..+....++.+.+..
T Consensus 202 ---------~~~~~~~p~dvA~~v~~l~s~~~~~~g~~i~v~~ 235 (248)
T 3asu_A 202 ---------QNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMP 235 (248)
T ss_dssp ------------CCBCHHHHHHHHHHHHHSCTTCCCCEEEECC
T ss_pred ---------hccCCCCHHHHHHHHHHHhcCCccceeeEEEEcc
Confidence 0112468999999999999865444445666643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=184.86 Aligned_cols=175 Identities=14% Similarity=0.053 Sum_probs=130.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++||||||+|+||.+++++|+++|++|++++|.........+.+.... ....+.++.+|+++.+++.++++.
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG-SGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999886543333333333321 113788999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----------CCcEEEEeecceeecCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----------KVKTLIYSSTCATYGEPDKMPI 187 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~~V~~SS~~vyg~~~~~~~ 187 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++... +..++|++||...+...+
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~---- 160 (319)
T 3ioy_A 85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG---- 160 (319)
T ss_dssp TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS----
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC----
Confidence 37899999999764332 23345668899999999998887543 245799999987764322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 188 TESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 188 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
....|+.||...+.+.+.++.+ .|+++++++||.|.++-
T Consensus 161 -------~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 202 (319)
T 3ioy_A 161 -------SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYI 202 (319)
T ss_dssp -------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC---
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCc
Confidence 2468999999666666655443 58999999999998764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=175.05 Aligned_cols=225 Identities=18% Similarity=0.091 Sum_probs=156.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..+++++||||+|+||++++++|+++|++|+++++..... ....+.+.. ...++.++.+|+++.+++.+++++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA---AGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999875533221 222222222 235788999999999999888754
Q ss_pred --CCCcEEEEcccccCccCCc----cChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGEST----LEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~----~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+||||||+....... ......+++|+.++.++++++... ...++|++||...+...+
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 170 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHP----------- 170 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCT-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCC-----------
Confidence 3899999999986543222 234557779999999999888754 235899999977654322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+.+.++.+ .|+++..++||.|..+.... ..............|
T Consensus 171 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--------------~~~~~~~~~~~~~~p------ 230 (267)
T 3u5t_A 171 SYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLE--------------GKSDEVRDRFAKLAP------ 230 (267)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------------------CHHHHHTSST------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccc--------------cCCHHHHHHHHhcCC------
Confidence 3568999999999999999887 48999999999997763210 001111122222222
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.+++|+|+++++++.... ...|+++++.+|
T Consensus 231 ----------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 231 ----------LERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp ----------TCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred ----------CCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 2347789999999999887533 234578888655
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=179.67 Aligned_cols=225 Identities=15% Similarity=0.144 Sum_probs=162.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+++|+||||+|+||++++++|+++|++|++++|..... .+...++ ..++.++.+|+++.+++.++++.
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~---~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKG---KALADEL---GNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999998853322 2222232 35789999999999999988864
Q ss_pred CCCcEEEEc-ccccCccC---------CccChHHHHHHHHHHHHHHHHHHHh----------cCCcEEEEeecceeecCC
Q 016208 123 NAFDAVMHF-AAVAYVGE---------STLEPLRYYHNITSNTLVILEAMAA----------HKVKTLIYSSTCATYGEP 182 (393)
Q Consensus 123 ~~~d~Vi~~-A~~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~----------~~~~~~V~~SS~~vyg~~ 182 (393)
.++|+|||+ |+...... ........+++|+.++.++++++.. .+..++|++||...+...
T Consensus 102 ~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 181 (281)
T 3ppi_A 102 GRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQ 181 (281)
T ss_dssp SEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCC
T ss_pred CCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCC
Confidence 378999999 54432221 1223577889999999999888753 234589999998776332
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHH
Q 016208 183 DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDA 259 (393)
Q Consensus 183 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+... .+.......
T Consensus 182 -----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---------------~~~~~~~~~ 235 (281)
T 3ppi_A 182 -----------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIME---------------SVGEEALAK 235 (281)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TTCHHHHHH
T ss_pred -----------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhh---------------cccHHHHHH
Confidence 23678999999999999888776 4899999999999765211 112222333
Q ss_pred HhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCccc
Q 016208 260 ARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s 319 (393)
.....+ + ...+++++|+|+++++++.... ..|+++++.+|..++
T Consensus 236 ~~~~~~---~------------~~~~~~pedvA~~v~~l~s~~~-~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 236 FAANIP---F------------PKRLGTPDEFADAAAFLLTNGY-INGEVMRLDGAQRFT 279 (281)
T ss_dssp HHHTCC---S------------SSSCBCHHHHHHHHHHHHHCSS-CCSCEEEESTTCCCC
T ss_pred HHhcCC---C------------CCCCCCHHHHHHHHHHHHcCCC-cCCcEEEECCCcccC
Confidence 333322 0 1347899999999999998643 345899998876553
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=171.75 Aligned_cols=215 Identities=14% Similarity=0.067 Sum_probs=153.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
|++|+||||+|+||++++++|+++|++|++++|.........+.+.... ..++.++.+|+++++++.+++++ .
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ--GVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999885433333333332111 35788999999999999988743 2
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
++|+|||+||+..... ...+....+++|+.++.++++++... +..++|++||...+... ...
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~-----------~~~ 148 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI-----------PYG 148 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC-----------TTC
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC-----------CCc
Confidence 7999999999865433 33455678899999999999887542 23467777665443221 124
Q ss_pred ChHHHHHHHHHHHHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
..|+.+|...+.+.+.+..+ .++++..++||.+-.+-... .+
T Consensus 149 ~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~---------------------------~~---------- 191 (235)
T 3l77_A 149 GGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGS---------------------------KP---------- 191 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTC---------------------------CS----------
T ss_pred chHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccc---------------------------cC----------
Confidence 68999999999999987554 58999999999987653110 00
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCC-CcceEEecCC
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPG-KVGIYNVGTG 315 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~~yni~~~ 315 (393)
.......+++++|+|+++++++..+... .++++....+
T Consensus 192 --~~~~~~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~~~ 230 (235)
T 3l77_A 192 --GKPKEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRSVY 230 (235)
T ss_dssp --CCCGGGTCBCHHHHHHHHHHHHTSCTTCCCCEEEECCTT
T ss_pred --CcccccCCCCHHHHHHHHHHHHcCCCCCccceEEEeecc
Confidence 0111224788999999999999876543 2344444333
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=176.36 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=158.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
++++||||+|+||++++++|+++| +.|++++|...... +...++ ..++.++.+|++|.+++.+++++
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~---~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLK---KLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHH---HHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHH---HHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 789999999999999999999985 78888877432221 222222 24788999999999999888765
Q ss_pred CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||.... . ....+....+++|+.++.++++++ ++.+ .++|++||...+.. .
T Consensus 77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~-----------~ 144 (254)
T 3kzv_A 77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMY-----------F 144 (254)
T ss_dssp SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCS-----------S
T ss_pred CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccC-----------C
Confidence 389999999997532 1 123345668899999999998887 4445 69999999776532 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
.+...|+.+|...+.+.+.++.+ .++++..++||.+..+........... ...............|
T Consensus 145 ~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------- 211 (254)
T 3kzv_A 145 SSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGP------SSMSAEQLKMFRGLKE------- 211 (254)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCT------TTSCHHHHHHHHHHHT-------
T ss_pred CCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCc------cccCHHHHHHHHHHHh-------
Confidence 24679999999999999999887 589999999999988754321110000 0111222222222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC--CCCcceEEecCCCc
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK--PGKVGIYNVGTGKG 317 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~yni~~~~~ 317 (393)
...+.+++|+|+++++++.... ...|+.+++.+++.
T Consensus 212 ---------~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 212 ---------NNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249 (254)
T ss_dssp ---------TC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGG
T ss_pred ---------cCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCccc
Confidence 2236788999999999988652 23457888866543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=173.51 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=132.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|.........+.+.. ...++.++.+|++|++++.+++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA---AGAKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999998854322222222222 235788999999999999888754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++.. .+ .++|++||...+.. .
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-----------~ 149 (247)
T 2jah_A 82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVN-----------V 149 (247)
T ss_dssp HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCC-----------C
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCC-----------C
Confidence 38999999999764322 2234456789999999998888753 35 79999999766532 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+..+.
T Consensus 150 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 192 (247)
T 2jah_A 150 RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL 192 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSG
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcc
Confidence 23568999999999999887765 58999999999998763
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=183.23 Aligned_cols=228 Identities=15% Similarity=0.118 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
+.++++|||||+|+||.+++++|+++|+ .|++++|.........+.+..... ..++.++.+|++|.+++.+++++.
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-NAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-TCEEEEEECCTTCGGGHHHHHHTS
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999987 999998854433333333332211 257889999999999999998753
Q ss_pred -----CCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCC
Q 016208 124 -----AFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 124 -----~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
++|+||||||..... ....+....+++|+.++.++++++ ++.+..++|++||...+..
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~-------- 181 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDA-------- 181 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC--------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCC--------
Confidence 799999999975421 123445678899999999998887 4456679999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+.....+. .............
T Consensus 182 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-----------~~~~~~~~~~~~~--- 244 (287)
T 3rku_A 182 ---YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYR-----------GNEEQAKNVYKDT--- 244 (287)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTT-----------TCHHHHHHHHTTS---
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcccccccc-----------CcHHHHHHhhccc---
Confidence 223678999999999999998887 68999999999998752000000 0001111111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCCCc
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTGKG 317 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~~~ 317 (393)
..++++|+|+++++++..+.. ..++++.+.+++.
T Consensus 245 -----------------~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 -----------------TPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp -----------------CCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred -----------------CCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 134789999999999986543 2346787776654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=174.42 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=145.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.|++|+||||+|+||++++++|+++|++|++++|....... ...++ ..++.++.+|+++.+++.+++++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~---~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQ---QELLL---GNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH---HHHHH---GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH---HHHHh---cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999885432222 22222 13688999999999999888754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... ...++|++||...+... .+
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~-----------~~ 144 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK-----------AN 144 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC-----------SS
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC-----------CC
Confidence 37999999999864322 33455678899999998888887532 12389999997765332 23
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++..++||.|-.+... .. . ..
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-------------------~~----~-~~-------- 192 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWD-------------------NT----D-HV-------- 192 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchh-------------------cc----C-CC--------
Confidence 568999999999999998876 5799999999998665211 00 0 00
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
....+++++|+|+++++++..+..
T Consensus 193 --------~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 193 --------DPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp ------------CBCHHHHHHHHHHHTCCCSS
T ss_pred --------CCcCCCCHHHHHHHHHHHHhCCCC
Confidence 011468899999999999985443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-21 Score=172.46 Aligned_cols=228 Identities=18% Similarity=0.113 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||.+++++|+++|++|+++.+... ....+...++......+.++.+|+.+.+++.++++.
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK--EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--HHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999998754332 222222333322346788899999999988877654
Q ss_pred -------CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -------NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -------~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||+..... ........+++|+.++.++++++... +..++|++||...+...
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~------- 155 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL------- 155 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC-------
T ss_pred hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC-------
Confidence 13999999999764432 22334557889999999999998765 34589999997765332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.....|+.+|...+.+.+.++.+ .|+++..++||.+..+...... -............+
T Consensus 156 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------------~~~~~~~~~~~~~~- 217 (255)
T 3icc_A 156 ----PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELL-------------SDPMMKQYATTISA- 217 (255)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTT-------------TSHHHHHHHHHTST-
T ss_pred ----CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhc-------------ccHHHHHhhhccCC-
Confidence 23578999999999999988776 5899999999999877432110 01111222222222
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++... ....|+++++.+|.
T Consensus 218 ---------------~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 ---------------FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp ---------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred ---------------cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 234678999999999988643 23345899997764
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=172.94 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=152.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+|+|+||||+|+||++++++|+++|++|++++|...... ....++.+|+++++++.+++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999998643321 2456778999999999888764
Q ss_pred ---CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|+|||+||...... ...+....+++|+.++.++++++... ...++|++||...+...
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 141 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT---------- 141 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC----------
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC----------
Confidence 38999999999764322 12334567889999999999998764 12589999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.+-.+ +.. .....
T Consensus 142 -~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~-------------------~~~----~~~~~---- 193 (241)
T 1dhr_A 142 -PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP-------------------MNR----KSMPE---- 193 (241)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH-------------------HHH----HHSTT----
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc-------------------ccc----ccCcc----
Confidence 23578999999999999998875 3599999999987653 111 11110
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.....+++.+|+|++++.++.... ...++.+++.+++
T Consensus 194 ------------~~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 194 ------------ADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTD 231 (241)
T ss_dssp ------------SCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEET
T ss_pred ------------hhhccCCCHHHHHHHHHHHhcCCCcCccceEEEEeCCC
Confidence 112235778999999999887532 2245688776543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=175.32 Aligned_cols=171 Identities=16% Similarity=0.087 Sum_probs=131.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.++++|||||+|+||++++++|+++|++|++++|.........+.+.. ....+.++.+|+++.+++.+++++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRD---AGGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 347999999999999999999999999999998854333333333322 245788899999999999888754
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+||||||+..... ...+....+++|+.++.++++++. +.+..++|++||...+... .
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~-----------~ 148 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV-----------P 148 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----------T
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC-----------C
Confidence 38999999999864432 233456688899999988777664 3466799999997765332 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhhC-CCcEEEEeeccccCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNVIGS 232 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~G~ 232 (393)
+...|+.+|...+.+.+.++.+. |+++..++||.|..+
T Consensus 149 ~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~ 187 (264)
T 3tfo_A 149 TAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESE 187 (264)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCc
Confidence 35689999999999999988774 899999999998765
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=178.49 Aligned_cols=228 Identities=15% Similarity=0.088 Sum_probs=162.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+++++||||+|+||.+++++|+++|++|++++|.........+.+.. ...++.++.+|+++.+++.++++.
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999866554444444433 246789999999999888877754
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||...... ...+....+++|+.++.++++++ ++.+..++|++||...+. +.
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-----------~~ 175 (275)
T 4imr_A 107 IAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR-----------PK 175 (275)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CC
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC-----------CC
Confidence 38999999999754332 23345567889999999988887 344667999999977653 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC-CceeE
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII-PGLKI 269 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 269 (393)
.+...|+.+|...+.+.+.++.+ .|+++..++||.|..+..... ....+.......... |
T Consensus 176 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~------------~~~~~~~~~~~~~~~~p---- 239 (275)
T 4imr_A 176 SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADR------------RAQDPEGWDEYVRTLNW---- 239 (275)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHH------------HHHCHHHHHHHHHHHST----
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccc------------cccChHHHHHHHhhcCc----
Confidence 33567999999999999988877 489999999999976521000 000011111111111 1
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+..++|+|+++++++... ....|+++++.+|
T Consensus 240 ------------~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 240 ------------MGRAGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp ------------TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred ------------cCCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 122567899999999988753 2334578888654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=172.79 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=143.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--CCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--AFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d 126 (393)
|++||||||+|+||++++++|+++|++|++++|.... ..+...++ ..++.++.+|+++.+++.+++++. .+|
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~d 74 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESK---LSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPS 74 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH---HHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence 6789999999999999999999999999999885322 22222222 357889999999999999998652 359
Q ss_pred EEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcC---CcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 127 AVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHK---VKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 127 ~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
+|||+||...... ...+....+++|+.++.++++++...- ..++|++||...+.. ..+...|
T Consensus 75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~-----------~~~~~~Y 143 (230)
T 3guy_A 75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQP-----------KAQESTY 143 (230)
T ss_dssp EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSC-----------CTTCHHH
T ss_pred EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCC-----------CCCCchh
Confidence 9999999764332 223445688899999999998876541 228999999776633 2236789
Q ss_pred HHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 200 GKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
+.+|...+.+.+.++.+ .|+++..++||.+..+-.. ....
T Consensus 144 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~-----------------------~~~~-------------- 186 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWE-----------------------TSGK-------------- 186 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHH-----------------------hcCC--------------
Confidence 99999999999998887 4899999999998765211 0000
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCC
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAK 303 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~ 303 (393)
......+++++|+|+++++++..+.
T Consensus 187 --~~~~~~~~~~~dvA~~i~~l~~~~~ 211 (230)
T 3guy_A 187 --SLDTSSFMSAEDAALMIHGALANIG 211 (230)
T ss_dssp --------CCCHHHHHHHHHHHCCEET
T ss_pred --CCCcccCCCHHHHHHHHHHHHhCcC
Confidence 1112347889999999999888544
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=178.45 Aligned_cols=226 Identities=17% Similarity=0.145 Sum_probs=160.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEe-CCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH-----------
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK----------- 114 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----------- 114 (393)
+.+++||||||+|+||.+++++|+++|++|++++ |.........+.+.. ....++.++.+|+++.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCC-------C
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--hcCCeEEEEEeeCCCchhcccccccccc
Confidence 4558999999999999999999999999999998 743222222222221 11257889999999998
Q ss_pred ------HHHHHHhh-----CCCcEEEEcccccCccCC------------------ccChHHHHHHHHHHHHHHHHHHH--
Q 016208 115 ------AVNKIFAE-----NAFDAVMHFAAVAYVGES------------------TLEPLRYYHNITSNTLVILEAMA-- 163 (393)
Q Consensus 115 ------~~~~~~~~-----~~~d~Vi~~A~~~~~~~~------------------~~~~~~~~~~n~~~~~~ll~~~~-- 163 (393)
++.++++. .++|+||||||+...... ..+....+++|+.++.++++++.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 201 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 201 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877754 389999999997643221 22345678899999988888775
Q ss_pred --hcC------CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 164 --AHK------VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 164 --~~~------~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+.+ ..++|++||...+.. ..+...|+.+|...+.+.+.++.+ .|+++.+++||.|..+
T Consensus 202 m~~~~~~~~~~~g~IV~isS~~~~~~-----------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~ 270 (328)
T 2qhx_A 202 VAGTPAKHRGTNYSIINMVDAMTNQP-----------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV 270 (328)
T ss_dssp HHHSCGGGSCSCEEEEEECCTTTTSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred HHhcCCcCCCCCcEEEEECchhhccC-----------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCC
Confidence 334 579999999765532 223678999999999999988776 4899999999999876
Q ss_pred CCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEE
Q 016208 233 DPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYN 311 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yn 311 (393)
. . .+ +..........| + + ..+.+++|+|+++++++... ....+++++
T Consensus 271 ~-~---------------~~-~~~~~~~~~~~p-~-----------~---~r~~~pedvA~~v~~l~s~~~~~itG~~i~ 318 (328)
T 2qhx_A 271 D-D---------------MP-PAVWEGHRSKVP-L-----------Y---QRDSSAAEVSDVVIFLCSSKAKYITGTCVK 318 (328)
T ss_dssp C-C---------------SC-HHHHHHHHTTCT-T-----------T---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred c-c---------------cc-HHHHHHHHhhCC-C-----------C---CCCCCHHHHHHHHHHHhCccccCccCcEEE
Confidence 4 2 11 222233333222 1 0 03678999999999998743 223457998
Q ss_pred ecCCCc
Q 016208 312 VGTGKG 317 (393)
Q Consensus 312 i~~~~~ 317 (393)
+.+|..
T Consensus 319 vdGG~~ 324 (328)
T 2qhx_A 319 VDGGYS 324 (328)
T ss_dssp ESTTGG
T ss_pred ECCCcc
Confidence 877644
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-21 Score=175.61 Aligned_cols=225 Identities=15% Similarity=0.113 Sum_probs=158.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC-CCCchhhhhhhhhcCCCCccEEEEccCCC----HHHHHHHHh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYADLGD----AKAVNKIFA 121 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~ 121 (393)
+.+++++||||+|+||++++++|+++|++|++++|.. .......+.+.. ....++.++.+|+++ .+++.++++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK--ERSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh--hcCCceEEEEeecCCccCCHHHHHHHHH
Confidence 4568999999999999999999999999999998854 222222222221 112578899999999 988887775
Q ss_pred h-----CCCcEEEEcccccCccCC--------------ccChHHHHHHHHHHHHHHHHHHHhc----C------CcEEEE
Q 016208 122 E-----NAFDAVMHFAAVAYVGES--------------TLEPLRYYHNITSNTLVILEAMAAH----K------VKTLIY 172 (393)
Q Consensus 122 ~-----~~~d~Vi~~A~~~~~~~~--------------~~~~~~~~~~n~~~~~~ll~~~~~~----~------~~~~V~ 172 (393)
+ .++|+|||+||+...... ..+....+++|+.++..+++++... + ..++|+
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~ 178 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN 178 (288)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence 3 389999999997643221 1234457889999999998887643 2 458999
Q ss_pred eecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCccccc
Q 016208 173 SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREH 249 (393)
Q Consensus 173 ~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 249 (393)
+||...+.. ..+...|+.+|...+.+.+.++.+ .|+++++++||.|+++. .
T Consensus 179 isS~~~~~~-----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-------------- 232 (288)
T 2x9g_A 179 LCDAMVDQP-----------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-------------- 232 (288)
T ss_dssp ECCTTTTSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T--------------
T ss_pred EecccccCC-----------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c--------------
Confidence 999766532 223578999999999999888776 48999999999999874 1
Q ss_pred ccchHHHHHHHhCCCCceeEcCccccCCCCcccccc-ccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 250 GRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY-IDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~-i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
.. +..........| ...+ .+++|+|+++++++... ....++.+++.+|..
T Consensus 233 -~~-~~~~~~~~~~~p----------------~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 233 -MG-EEEKDKWRRKVP----------------LGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284 (288)
T ss_dssp -SC-HHHHHHHHHTCT----------------TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -cC-hHHHHHHHhhCC----------------CCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence 00 111122222222 1124 68999999999998743 223457888876643
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-21 Score=172.44 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=166.5
Q ss_pred CCCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 46 EPGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 46 ~~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
...+++|+||||+ |+||.+++++|+++|++|++++|..... ....+.+.... ..++.++.+|+++.+++.+++++
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY--GIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH--CCCEECCBCCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc--CCceeEEecCCCCHHHHHHHHHH
Confidence 3556899999999 9999999999999999999988755443 22333332211 35788999999999999888765
Q ss_pred -----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||+..... ...+....+++|+.++.++++++ ++.+..++|++||...+...
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 167 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN------- 167 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC-------
Confidence 37999999999765432 23445668899999999988887 44556799999997654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhCC--CcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTTN--MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
+..+...|+.+|...+.+.+.++.+.+ +++..+.||.+..+-.. ..............|
T Consensus 168 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~---------------~~~~~~~~~~~~~~~-- 228 (267)
T 3gdg_A 168 --FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSD---------------FVPKETQQLWHSMIP-- 228 (267)
T ss_dssp --SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGG---------------GSCHHHHHHHHTTST--
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhh---------------hCCHHHHHHHHhcCC--
Confidence 112467899999999999999888743 79999999998765311 122233333333322
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
...+.+++|+|+++++++... ....|+++++.+|..
T Consensus 229 --------------~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 229 --------------MGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp --------------TSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred --------------CCCCcCHHHHHhHhheeecCccccccCCEEEECCcee
Confidence 234678999999999988753 223468999977643
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=174.51 Aligned_cols=220 Identities=13% Similarity=0.086 Sum_probs=150.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-----A 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 124 (393)
+++|||||+|+||++++++|+++|++|++++|.... ..+...++... .++.++.+|++|.+++.++++.. +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~---~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 97 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREER---LQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFAT 97 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999999999999885322 22222222221 47889999999999999998652 5
Q ss_pred CcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHH----HhcCCc-EEEEeecceeecCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAM----AAHKVK-TLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 125 ~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
+|+|||+||+... . ....+....+++|+.++.++++++ ++.+.. ++|++||...+.. ..
T Consensus 98 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~-----------~~ 166 (272)
T 2nwq_A 98 LRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP-----------YP 166 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC-----------CT
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC-----------CC
Confidence 7999999997542 1 123345668889999977766655 345666 9999999776532 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+.+.++.+ .|+++++++||.+..+.... .+... ..... ...
T Consensus 167 ~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~--------------~~~~~-~~~~~------~~~- 224 (272)
T 2nwq_A 167 GSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV--------------RFGGD-QARYD------KTY- 224 (272)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc--------------ccccc-hHHHH------Hhh-
Confidence 3568999999999999998876 58999999999998763110 00000 00000 000
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
. ...++..+|+|+++++++..+....++.+.+..+
T Consensus 225 ------~---~~~~~~pedvA~~v~~l~s~~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 225 ------A---GAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPV 259 (272)
T ss_dssp ----------CCCCBCHHHHHHHHHHHHTSCTTEEEEEEEEEET
T ss_pred ------c---cCCCCCHHHHHHHHHHHhCCCccCccceEEEeec
Confidence 0 0124789999999999998654434456656443
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-21 Score=174.41 Aligned_cols=219 Identities=16% Similarity=0.077 Sum_probs=156.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCch----hhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG----AVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|....... ..+...++.....++.++.+|+++.+++.+++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999999999997653222 1111222222235788999999999999888764
Q ss_pred -----CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||+...... ..+....+++|+.++.++++++... +..++|++||...+...
T Consensus 87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 159 (285)
T 3sc4_A 87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK------- 159 (285)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC-------
Confidence 289999999998754322 2334557779999999999988654 45699999997654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.+... .+. ........
T Consensus 160 ---~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t------------------~~~----~~~~~~~~- 213 (285)
T 3sc4_A 160 ---WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT------------------AAV----QNLLGGDE- 213 (285)
T ss_dssp ---GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC------------------HHH----HHHHTSCC-
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc------------------HHH----Hhhccccc-
Confidence 123578999999999999998877 6899999999854322 121 12111111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEe
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNV 312 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni 312 (393)
....+...+|+|+++++++..+....++.+.+
T Consensus 214 --------------~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~~ 245 (285)
T 3sc4_A 214 --------------AMARSRKPEVYADAAYVVLNKPSSYTGNTLLC 245 (285)
T ss_dssp --------------CCTTCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred --------------cccCCCCHHHHHHHHHHHhCCcccccceEEEE
Confidence 12236688999999999998654333345544
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=175.29 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=149.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++++|||||+|+||.+++++|+++|++|++++|.........+.+.... ...+.++.+|++|.+++.++++.
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT--GNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999885433333333332221 12358899999999999888765
Q ss_pred -CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHH----hcC--CcEEEEeecceeecCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMA----AHK--VKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~--~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|+||||||..... ....+....+++|+.++.++++++. +.+ ..++|++||...+..
T Consensus 109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~--------- 179 (281)
T 4dry_A 109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP--------- 179 (281)
T ss_dssp HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC---------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC---------
Confidence 3799999999975331 2234456688999999877777664 332 468999999766532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+-.. .+........
T Consensus 180 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-------------------~~~~~~~~~~--- 235 (281)
T 4dry_A 180 --RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA-------------------RMSTGVLQAN--- 235 (281)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC--------------------------CEEECTT---
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh-------------------hhcchhhhhh---
Confidence 234678999999999999988876 6899999999999765311 0000000000
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPG 305 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~ 305 (393)
.......++.++|+|+++++++..+...
T Consensus 236 ----------~~~~~~~~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 236 ----------GEVAAEPTIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp ----------SCEEECCCBCHHHHHHHHHHHHHSCTTE
T ss_pred ----------hcccccCCCCHHHHHHHHHHHhCCCccC
Confidence 1112234789999999999999976543
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-20 Score=173.82 Aligned_cols=218 Identities=17% Similarity=0.102 Sum_probs=156.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCch----hhhhhhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG----AVKVLQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
...+++||||||+|.||.+++++|+++|++|++++|....... ..+...++.....++.++.+|++|.+++.++++
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 3566899999999999999999999999999999987554322 112222222224578899999999999998886
Q ss_pred h-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCC
Q 016208 122 E-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 122 ~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
+ .++|+||||||+..... ........+++|+.++.++++++. +.+..++|++||...+...
T Consensus 122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~------ 195 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV------ 195 (346)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC------
Confidence 5 38999999999764332 223446688999999999999884 3456799999997665321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
+..+...|+.+|...+.+.+.++.+ .++++..+.|+.++.. .+ .+.+....
T Consensus 196 ---~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T------------------~~----~~~~~~~~-- 248 (346)
T 3kvo_A 196 ---WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT------------------AA----MDMLGGPG-- 248 (346)
T ss_dssp ---GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC------------------HH----HHHHCC----
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc------------------HH----HHhhcccc--
Confidence 1224678999999999999998887 4799999999864443 11 12221111
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceE
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIY 310 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~y 310 (393)
....+..++|+|+++++++.......|+.+
T Consensus 249 --------------~~~r~~~pedvA~~v~~L~s~~~~itG~~i 278 (346)
T 3kvo_A 249 --------------IESQCRKVDIIADAAYSIFQKPKSFTGNFV 278 (346)
T ss_dssp --------------CGGGCBCTHHHHHHHHHHHTSCTTCCSCEE
T ss_pred --------------ccccCCCHHHHHHHHHHHHhcCCCCCceEE
Confidence 123466889999999999987322233444
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=170.63 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=150.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--CCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--NAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d 126 (393)
|++|+||||+|+||++++++|+++|++|++++|.........+ +... ...+..+ |..+.+.+.+.+.+ .++|
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~---~~~~~~~--d~~~v~~~~~~~~~~~g~iD 74 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET---YPQLKPM--SEQEPAELIEAVTSAYGQVD 74 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH---CTTSEEC--CCCSHHHHHHHHHHHHSCCC
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc---CCcEEEE--CHHHHHHHHHHHHHHhCCCC
Confidence 6789999999999999999999999999998875433222222 3221 1234433 66665544333221 4899
Q ss_pred EEEEccccc-CccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 127 AVMHFAAVA-YVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 127 ~Vi~~A~~~-~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
+|||+||.. .... ...+....+++|+.++.++++++. +.+..++|++||...+.. ..+..
T Consensus 75 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~~ 143 (254)
T 1zmt_A 75 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGP-----------WKELS 143 (254)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSC-----------CTTCH
T ss_pred EEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccC-----------CCCch
Confidence 999999976 3221 223456688899999999888774 445679999999766532 12357
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...+.+.+.++.+ .|+++++++||.|+|+.....+. . .+. .. .+..........|
T Consensus 144 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~---T-~~~--~~-~~~~~~~~~~~~p--------- 207 (254)
T 1zmt_A 144 TYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYP---T-EPW--KT-NPEHVAHVKKVTA--------- 207 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCB---H-HHH--TT-CHHHHHHHHHHSS---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCC---C-ccc--cc-ChHHHHHHhccCC---------
Confidence 8999999999999988776 48999999999999986432110 0 000 00 0111111111111
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
...+.+++|+|+++++++.... ...++.+++.++.
T Consensus 208 -------~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 208 -------LQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp -------SSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred -------CCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 1236789999999999987543 2245789887664
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=171.54 Aligned_cols=225 Identities=17% Similarity=0.152 Sum_probs=158.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEe-CCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH-----------
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK----------- 114 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----------- 114 (393)
+.+++++||||+|+||.+++++|+++|++|++++ |.........+.+.. ....++.++.+|+++.+
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGADGSA 84 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhh--hcCCeeEEEEeecCCccccccccccccc
Confidence 4558999999999999999999999999999998 743222222222221 11357889999999998
Q ss_pred ------HHHHHHhh-----CCCcEEEEcccccCccCC------------------ccChHHHHHHHHHHHHHHHHHHH--
Q 016208 115 ------AVNKIFAE-----NAFDAVMHFAAVAYVGES------------------TLEPLRYYHNITSNTLVILEAMA-- 163 (393)
Q Consensus 115 ------~~~~~~~~-----~~~d~Vi~~A~~~~~~~~------------------~~~~~~~~~~n~~~~~~ll~~~~-- 163 (393)
++.+++++ .++|+||||||+...... .......+++|+.++.++++++.
T Consensus 85 ~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 164 (291)
T 1e7w_A 85 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 164 (291)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88877754 389999999997643221 23345678899999998888775
Q ss_pred --hcC------CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 164 --AHK------VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 164 --~~~------~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
+.+ ..++|++||...+.. ..+...|+.+|...+.+.+.++.+ .|+++..++||.+..+
T Consensus 165 m~~~~~~~~~~~g~Iv~isS~~~~~~-----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~ 233 (291)
T 1e7w_A 165 VAGTPAKHRGTNYSIINMVDAMTNQP-----------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV 233 (291)
T ss_dssp HHTSCGGGSCSCEEEEEECCTTTTSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCG
T ss_pred HHhcCCCCCCCCcEEEEEechhhcCC-----------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCC
Confidence 334 579999999766532 223678999999999999988776 5899999999998654
Q ss_pred CCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc-ccccHHHHHHHHHHHHhcC-CCCCcceE
Q 016208 233 DPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR-DYIDVTDLVDAHVLALANA-KPGKVGIY 310 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~-~~i~v~Dva~a~~~~l~~~-~~~~~~~y 310 (393)
. . + . +..........| .. .+.+.+|+|+++++++... ....++.+
T Consensus 234 ~-~--~------------~--~~~~~~~~~~~p----------------~~~r~~~pedvA~~v~~l~s~~~~~itG~~i 280 (291)
T 1e7w_A 234 D-D--M------------P--PAVWEGHRSKVP----------------LYQRDSSAAEVSDVVIFLCSSKAKYITGTCV 280 (291)
T ss_dssp G-G--S------------C--HHHHHHHHTTCT----------------TTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred c-c--C------------C--HHHHHHHHhhCC----------------CCCCCCCHHHHHHHHHHHhCCcccCccCcEE
Confidence 2 1 0 0 112222222222 11 3668999999999998743 22345788
Q ss_pred EecCCCc
Q 016208 311 NVGTGKG 317 (393)
Q Consensus 311 ni~~~~~ 317 (393)
++.++..
T Consensus 281 ~vdGG~~ 287 (291)
T 1e7w_A 281 KVDGGYS 287 (291)
T ss_dssp EESTTGG
T ss_pred EECCCcc
Confidence 8876644
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=172.91 Aligned_cols=206 Identities=14% Similarity=0.056 Sum_probs=149.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++|+||||+|+||.+++++|+++|++|++++|.........+.+.... ..++.++.+|++|.+++.++++.
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG--AASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT--CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999885433222222222221 13688999999999998887753
Q ss_pred -CCCcEEEEc-ccccCccC---CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHF-AAVAYVGE---STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~-A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+ |+...... ...+....+++|+.++.++++++... +.+++|++||...+.. ..
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~-----------~~ 172 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVA-----------YP 172 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSC-----------CT
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccC-----------CC
Confidence 379999999 56543221 22334567899999999988877542 2369999999776532 22
Q ss_pred CCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
+...|+.+|...|.+.+.++.+ .++++++++||.+..+. .. ....
T Consensus 173 ~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~-------------------~~----~~~~------- 222 (286)
T 1xu9_A 173 MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-------------------AM----KAVS------- 222 (286)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH-------------------HH----HHSC-------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh-------------------HH----Hhcc-------
Confidence 4678999999999999887765 48999999999986541 11 0000
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP 304 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 304 (393)
+.....+++++|+|++++.+++.+..
T Consensus 223 ---------~~~~~~~~~~~~vA~~i~~~~~~~~~ 248 (286)
T 1xu9_A 223 ---------GIVHMQAAPKEECALEIIKGGALRQE 248 (286)
T ss_dssp ---------GGGGGGCBCHHHHHHHHHHHHHTTCS
T ss_pred ---------ccccCCCCCHHHHHHHHHHHHhcCCc
Confidence 11123468999999999999986543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=167.43 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=132.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC--CCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL--GDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~- 122 (393)
.+.+++|+||||+|+||++++++|+++|++|++++|.........+.+.... ...+.++.+|+ .+.+++.++++.
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG--QPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--SCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--CCCceEEEeccccCCHHHHHHHHHHH
Confidence 4566899999999999999999999999999999886443333333333321 14667777777 899888877654
Q ss_pred ----CCCcEEEEcccccCcc-----CCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVG-----ESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|+|||+||..... ....+....+++|+.++.++++++. +.+..++|++||...+..
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 160 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKG-------- 160 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSC--------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCC--------
Confidence 3899999999975321 1234456688999999999988884 445679999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccC
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIG 231 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G 231 (393)
..+...|+.+|...+.+.+.++.+ .++++..++||.+..
T Consensus 161 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t 203 (247)
T 3i1j_A 161 ---RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRT 203 (247)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSS
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccC
Confidence 223578999999999999988776 478999999988765
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=169.97 Aligned_cols=233 Identities=12% Similarity=0.087 Sum_probs=157.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||.+++++|+++|++|++++|.... ..+..... ..++.++.+|+++.+++.+++++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAER---LRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH---HHHHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999874322 11222221 35788999999999998887754
Q ss_pred -CCCcEEEEcccccCccCCc---------cChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGEST---------LEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~~---------~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++|||||+....... ......+++|+.++.++++++... +..++|++||...+..
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 148 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYP-------- 148 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSS--------
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccC--------
Confidence 3799999999975432111 124557889999999998887542 1258999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
..+...|+.+|...+.+.+.++.+ ..+++..+.||.|..+-............ ..............|
T Consensus 149 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p-- 218 (281)
T 3zv4_A 149 ---NGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQS-----ISSVPLADMLKSVLP-- 218 (281)
T ss_dssp ---SSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC-------------CCHHHHHHHTCT--
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCccccccccccccc-----ccchhHHHHHHhcCC--
Confidence 223568999999999999998877 34999999999998763221000000000 000001222222222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHh-cCCC-CCcceEEecCCCc
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALA-NAKP-GKVGIYNVGTGKG 317 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~-~~~~-~~~~~yni~~~~~ 317 (393)
...+..++|+|+++++++. .... ..|+++++.+|..
T Consensus 219 --------------~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 219 --------------IGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMG 256 (281)
T ss_dssp --------------TSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGG
T ss_pred --------------CCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCc
Confidence 2336788999999999987 3322 3568999977643
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=172.02 Aligned_cols=209 Identities=17% Similarity=0.117 Sum_probs=132.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHH---HHHhh-
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVN---KIFAE- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~- 122 (393)
+.+++|+||||+|+||++++++|++ |+.|++++|.... .+.+.+ ..++.++.+|+.+.++.. +.+++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~----~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEH----LAALAE----IEGVEPIESDIVKEVLEEGGVDKLKNL 73 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHH----HHHHHT----STTEEEEECCHHHHHHTSSSCGGGTTC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHH----HHHHHh----hcCCcceecccchHHHHHHHHHHHHhc
Confidence 3458999999999999999999987 9999999874321 111212 146889999998875522 12211
Q ss_pred CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+|||+||+...... ..+....+++|+.++.++++++. +.+ .++|++||...+... .
T Consensus 74 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~-----------~ 141 (245)
T 3e9n_A 74 DHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPH-----------P 141 (245)
T ss_dssp SCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC--------------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCC-----------C
Confidence 379999999998654322 22345678899999877777664 334 689999998777532 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++... .+ .....
T Consensus 142 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~---------------~~----~~~~~---------- 192 (245)
T 3e9n_A 142 GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQ---------------GL----MDSQG---------- 192 (245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhh---------------hh----hhhhh----------
Confidence 3678999999999999998876 6899999999999886321 00 00000
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEec
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVG 313 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~ 313 (393)
.......+++++|+|++++++++.+... .+||+.
T Consensus 193 ------~~~~~~~~~~p~dvA~~i~~l~~~~~~~--~~~~i~ 226 (245)
T 3e9n_A 193 ------TNFRPEIYIEPKEIANAIRFVIDAGETT--QITNVD 226 (245)
T ss_dssp ---------CCGGGSCHHHHHHHHHHHHTSCTTE--EEEEEE
T ss_pred ------cccccccCCCHHHHHHHHHHHHcCCCcc--ceeeeE
Confidence 1112235789999999999999876543 688874
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=158.15 Aligned_cols=219 Identities=13% Similarity=0.108 Sum_probs=158.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
..+|+++||||++.||+++++.|.++|.+|++++|....... ....++..+.+|++|++++.+++++ .++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~---------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA---------PRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS---------CCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh---------hhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 467999999999999999999999999999999986433221 1135788999999999999998876 469
Q ss_pred cEEEEcccccCccC--CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 126 DAVMHFAAVAYVGE--STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 126 d~Vi~~A~~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
|++|||||+..+.. ...+....+++|+.++..+.+++. +.+ .++|++||....-.. .....|
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~-----------~~~~~Y 147 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYSTFGS-----------ADRPAY 147 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGGTSCC-----------SSCHHH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccccCCC-----------CCCHHH
Confidence 99999999764321 223456678899999887776654 333 689999997654222 125689
Q ss_pred HHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccC
Q 016208 200 GKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
+.||.....+.+.++.+ .|+++..+.||.|--|..... .--+...+.+.+..| +.
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~-------------~~~~~~~~~~~~~~P-lg-------- 205 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGL-------------KADVEATRRIMQRTP-LA-------- 205 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC------------------CCCHHHHHHHHHTCT-TC--------
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcc-------------cCCHHHHHHHHhcCC-CC--------
Confidence 99999999999988877 689999999999976532210 011223344444444 21
Q ss_pred CCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 277 ADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 277 ~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
-+...+|+|.++++++.... --.|+++.+.+|
T Consensus 206 -------R~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 206 -------RWGEAPEVASAAAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp -------SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -------CCcCHHHHHHHHHHHhCchhcCccCceEEECcc
Confidence 25578999999999886432 234578888554
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.6e-20 Score=166.18 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=132.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchh----hhhhhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGA----VKVLQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
.+.+++++||||+|.||++++++|+++|++|++++|........ .+....+.....++.++.+|+++.+++.++++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999999999999999999975442221 11111111123578899999999999988875
Q ss_pred h-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCC
Q 016208 122 E-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 122 ~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
+ .++|++|||||+..... ...+....+++|+.++..+++++.. .+..++|++||...+....
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----- 157 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW----- 157 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH-----
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC-----
Confidence 4 38999999999764332 2234456788999999998888753 4556999999976553210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIG 231 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G 231 (393)
..+...|+.+|...+.+.+.++.+ .|+++..++||.+..
T Consensus 158 ----~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~ 199 (274)
T 3e03_A 158 ----WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIA 199 (274)
T ss_dssp ----HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBC
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccc
Confidence 123567999999999999988776 589999999985443
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=164.25 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=130.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH---CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
+.+++++||||+|+||++++++|++ +|++|++++|.........+.+.... ...++.++.+|+++++++.++++..
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ-PDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC-TTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEecCCCCHHHHHHHHHHH
Confidence 4458999999999999999999999 89999999885432222222222211 1246889999999999988776541
Q ss_pred -------CCc--EEEEcccccCc--c-----CCccChHHHHHHHHHHHHHHHHHHHhc------CCcEEEEeecceeecC
Q 016208 124 -------AFD--AVMHFAAVAYV--G-----ESTLEPLRYYHNITSNTLVILEAMAAH------KVKTLIYSSTCATYGE 181 (393)
Q Consensus 124 -------~~d--~Vi~~A~~~~~--~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~~V~~SS~~vyg~ 181 (393)
++| +||||||+... . ....+....+++|+.++.++++++... +..++|++||...+..
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 162 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP 162 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCC
Confidence 468 99999997532 1 123455678899999999999998654 2357999999877632
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhC-CCcEEEEeeccccC
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNVIG 231 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~G 231 (393)
..+...|+.+|...+.+.+.++.+. ++++..+.||.+-.
T Consensus 163 -----------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T 202 (259)
T 1oaa_A 163 -----------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDN 202 (259)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSS
T ss_pred -----------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCc
Confidence 2236789999999999999998874 48999999988754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-19 Score=158.44 Aligned_cols=228 Identities=14% Similarity=0.041 Sum_probs=159.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||+++++.|.++|.+|++++|.........+.++. ...++.++.+|+++++++.+++++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG---MGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999998854333333333333 346788999999999999887765
Q ss_pred -CCCcEEEEcccccCc-c----CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-G----ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~----~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++|||||+... . ....+....+++|+.++..+.+++ ++.+-.++|++||...+-..
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~---------- 151 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGG---------- 151 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSS----------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCC----------
Confidence 589999999996532 1 123345668889998887776655 44566799999997654221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.....|+.+|.....+.+.++.+ .|+++..+.||.|--+-...... --....+...+..+.+
T Consensus 152 -~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~------------~~~~~~~~~~~~~~~~-- 216 (254)
T 4fn4_A 152 -FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSK------------PSELGMRTLTKLMSLS-- 216 (254)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSS------------CCHHHHHHHHHHHTTC--
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccC------------CcHHHHHHHHhcCCCC--
Confidence 12568999999999999988877 68999999999987653221110 0111111111111101
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
.-+...+|+|.++++++... .--.|+++.+.+|
T Consensus 217 -------------~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 217 -------------SRLAEPEDIANVIVFLASDEASFVNGDAVVVDGG 250 (254)
T ss_dssp -------------CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------------CCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence 12456899999999988743 2234578888655
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=168.84 Aligned_cols=184 Identities=14% Similarity=0.036 Sum_probs=132.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~--- 122 (393)
..+++||||||+|+||.+++++|+++|++|++++|.........+.+... ...++.++.+|+++. +++.++++.
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS--NHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999988654333333333322 124789999999998 777766543
Q ss_pred --CCCcEEEEcccccCcc----------------------------------CCccChHHHHHHHHHHHHHHHHHHH---
Q 016208 123 --NAFDAVMHFAAVAYVG----------------------------------ESTLEPLRYYHNITSNTLVILEAMA--- 163 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~----------------------------------~~~~~~~~~~~~n~~~~~~ll~~~~--- 163 (393)
.++|+||||||+.... .........+++|+.++.++++++.
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 3899999999986321 1123345568999999888888775
Q ss_pred -hcCCcEEEEeecceeecCCCC--------------------------------CCCCCCCCCCCCChHHHHHHHHHHHH
Q 016208 164 -AHKVKTLIYSSTCATYGEPDK--------------------------------MPITESTPQKPINPYGKAKKMSEDII 210 (393)
Q Consensus 164 -~~~~~~~V~~SS~~vyg~~~~--------------------------------~~~~E~~~~~p~~~Y~~sK~~~E~~~ 210 (393)
+.+..++|++||...+..... ....+...+.+...|+.||+..+.+.
T Consensus 168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~ 247 (311)
T 3o26_A 168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT 247 (311)
T ss_dssp TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHH
Confidence 345579999999766432110 01111122234568999999999999
Q ss_pred HHHHhh-CCCcEEEEeeccccCC
Q 016208 211 IDFSKT-TNMAVMILRYFNVIGS 232 (393)
Q Consensus 211 ~~~~~~-~g~~~~ilRp~~v~G~ 232 (393)
+.++.+ .++++..++||.|..+
T Consensus 248 ~~la~e~~~i~v~~v~PG~v~T~ 270 (311)
T 3o26_A 248 RVLANKIPKFQVNCVCPGLVKTE 270 (311)
T ss_dssp HHHHHHCTTSEEEEECCCSBCSG
T ss_pred HHHHhhcCCceEEEecCCceecC
Confidence 999888 4699999999998764
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=178.08 Aligned_cols=227 Identities=17% Similarity=0.104 Sum_probs=159.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-- 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 123 (393)
...++||||||+|+||.+++++|.++|++ |++++|.........+...++.....++.++.+|++|.+++.++++..
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~ 303 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 303 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 34589999999999999999999999995 898988654332222222333222457889999999999999998653
Q ss_pred --CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 124 --AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 124 --~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
.+|+|||+||+..... ........++.|+.++.++.+++...+.++||++||...+.... ...
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~-----------g~~ 372 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAP-----------GLG 372 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCT-----------TCT
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCC-----------CCH
Confidence 4699999999764321 22344557789999999999999988889999999975543222 257
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
.|+.+|...+.+...+.. .|+++++++||.+.+++.. ... .... +
T Consensus 373 ~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~------------------~~~---~~~~---~---------- 417 (486)
T 2fr1_A 373 GYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA------------------EGP---VADR---F---------- 417 (486)
T ss_dssp TTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC------------------------------------C----------
T ss_pred HHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCccc------------------chh---HHHH---H----------
Confidence 899999999998877654 6999999999999876311 000 0000 0
Q ss_pred CCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHH
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEAC 327 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i 327 (393)
...-..+++.+|+++++..++..+... +. +. .+.|..+...+
T Consensus 418 -~~~g~~~i~~e~~a~~l~~~l~~~~~~---~~-v~---~~d~~~~~~~~ 459 (486)
T 2fr1_A 418 -RRHGVIEMPPETACRALQNALDRAEVC---PI-VI---DVRWDRFLLAY 459 (486)
T ss_dssp -TTTTEECBCHHHHHHHHHHHHHTTCSS---CE-EC---EECHHHHHHHH
T ss_pred -HhcCCCCCCHHHHHHHHHHHHhCCCCe---EE-EE---eCCHHHHhhhh
Confidence 001135789999999999999865432 22 32 25566666544
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=167.97 Aligned_cols=267 Identities=16% Similarity=0.069 Sum_probs=171.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC------CCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS------RGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
+.+++|+||||+|+||++++++|+++|++|+++++.. +......+...++... + ....+|+.+.+++.+++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~--~-~~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR--G-GKAVANYDSVEAGEKLV 83 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT--T-CEEEEECCCGGGHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh--C-CeEEEeCCCHHHHHHHH
Confidence 4568999999999999999999999999999987631 2222222222222111 1 12357999887666554
Q ss_pred hh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeeccee-ecCCCCCC
Q 016208 121 AE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCAT-YGEPDKMP 186 (393)
Q Consensus 121 ~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~v-yg~~~~~~ 186 (393)
+. .++|+||||||+..... ........+++|+.++.++++++ ++.+..++|++||... ++..
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~---- 159 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF---- 159 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC----
Confidence 32 47999999999764321 23345668899999988888776 4456679999999644 4321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
+...|+.+|...+.+.+.++.+ .|+++.+++||.+ .+... ...
T Consensus 160 --------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~---------------~~~---------- 205 (319)
T 1gz6_A 160 --------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE---------------TVM---------- 205 (319)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG---------------GGS----------
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc---------------ccC----------
Confidence 3568999999999999988776 5899999999986 32100 000
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR 343 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~ 343 (393)
+.....+++++|+|+++++++..+....++.|++.++..... .+......
T Consensus 206 ---------------~~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG~~~~~---------------~~~~~~~~ 255 (319)
T 1gz6_A 206 ---------------PEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKL---------------RWERTLGA 255 (319)
T ss_dssp ---------------CHHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETTEEEEE---------------EEEECCCE
T ss_pred ---------------ChhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCCeEEEE---------------eeeeccce
Confidence 001123567899999999988764433567888876632111 01000000
Q ss_pred CCCCcceecCHHHH-------HhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 344 PGDYAEVYSDPSKI-------RDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 344 ~~~~~~~~~d~~k~-------~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
.........|.+.+ .+..|+.... ++++.+++++++..+.+
T Consensus 256 ~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 303 (319)
T 1gz6_A 256 IVRKRNQPMTPEAVRDNWVKICDFSNASKPK-SIQESTGGIIEVLHKID 303 (319)
T ss_dssp ECCBTTBCCCHHHHHHTHHHHTCCTTCBCCC-CHHHHHHHHHHHHHHHC
T ss_pred eccCCCCCCCHHHHHHHHHHhhccccccCCC-chHHHHHHHHHHHhhcc
Confidence 00000112233332 2344666555 89999999998876654
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=156.42 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=161.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
...+.|+++||||++.||+++++.|.++|..|++++|..... ...+.+.+. ..++.++.+|+++++++.+++++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~-~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG-AFLDALAQR---QPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH-HHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH-HHHHHHHhc---CCCEEEEEeecCCHHHHHHHHHHHH
Confidence 456679999999999999999999999999999999865442 222223222 46889999999999998877755
Q ss_pred ---CCCcEEEEcccccCccC---CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE---STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++|||||+..... ...+....+++|+.++..+.+++. +.+ .++|++||...+...+
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~--------- 148 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-GAIVNISSKTAVTGQG--------- 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTHHHHCCS---------
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEeehhhccCCC---------
Confidence 58999999999764322 233455678899998888776654 334 5899999976653322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.|--|......... ..............| +
T Consensus 149 --~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~---------~~~~~~~~~~~~~~p-l-- 214 (258)
T 4gkb_A 149 --NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATF---------EDPEAKLAEIAAKVP-L-- 214 (258)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC--------------------CHHHHHHTTCT-T--
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcc---------cChHHHHHHHHhcCC-C--
Confidence 2568999999999999988876 6899999999999765422110000 001112223333332 1
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
+ +-+...+|+|.++++++... .--.|+++.+.+|.
T Consensus 215 ---------g---~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 215 ---------G---RRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp ---------T---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ---------C---CCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCc
Confidence 0 23567899999999988743 22345788886663
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=164.01 Aligned_cols=169 Identities=10% Similarity=0.034 Sum_probs=129.0
Q ss_pred CCCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC-
Q 016208 47 PGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN- 123 (393)
Q Consensus 47 ~~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 123 (393)
+.+++|+|||| +|+||++++++|+++|++|++++|.... ..+.+.+.. ..++.++.+|+++++++.+++++.
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR---LIQRITDRL--PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH---HHHHHHTTS--SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH---HHHHHHHhc--CCCceEEEccCCCHHHHHHHHHHHH
Confidence 45589999999 9999999999999999999999875321 111121111 246789999999999998887542
Q ss_pred -------CCcEEEEcccccCc-----c----CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCC
Q 016208 124 -------AFDAVMHFAAVAYV-----G----ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKM 185 (393)
Q Consensus 124 -------~~d~Vi~~A~~~~~-----~----~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~ 185 (393)
++|+||||||.... . ....+....+++|+.++.++++++... ...++|++||...++
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~----- 154 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA----- 154 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-----
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc-----
Confidence 89999999997641 1 123345567889999999999999754 125899999865432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 186 PITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 186 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+
T Consensus 155 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 197 (269)
T 2h7i_A 155 -------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 197 (269)
T ss_dssp -------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred -------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccch
Confidence 123578999999999999988776 5899999999988654
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=155.48 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=154.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|+||||||++.||+++++.|+++|++|++++|.... . + ++.....++.++.+|++|++++.+++++ .+
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~---~-~---~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKR---S-A---DFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---H-H---HHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---H-H---HHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999884321 1 1 1222236788999999999998877654 58
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
+|++|||||...... ...+....+++|+.++..+.+++. +.+ .++|++||...+...+ ..
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~~-----------~~ 143 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSEP-----------DS 143 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCCT-----------TC
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCCC-----------CC
Confidence 999999999764432 233456688899999888776654 334 6899999976653222 25
Q ss_pred ChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
..|+.||.....+.+.++.+ .++++..+.||.|--+... .+... ..+..| +
T Consensus 144 ~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~---------------~~~~~----~~~~~P-l------- 196 (247)
T 3ged_A 144 EAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ---------------EFTQE----DCAAIP-A------- 196 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC------------------CCHH----HHHTST-T-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH---------------HHHHH----HHhcCC-C-------
Confidence 68999999999999888777 5799999999998654321 12221 222223 1
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK 316 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~ 316 (393)
.-+...+|+|.++++++... --.|+++.+.+|-
T Consensus 197 --------~R~g~pediA~~v~fL~s~~-~iTG~~i~VDGG~ 229 (247)
T 3ged_A 197 --------GKVGTPKDISNMVLFLCQQD-FITGETIIVDGGM 229 (247)
T ss_dssp --------SSCBCHHHHHHHHHHHHHCS-SCCSCEEEESTTG
T ss_pred --------CCCcCHHHHHHHHHHHHhCC-CCCCCeEEECcCH
Confidence 12557899999999999753 3346899886663
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=155.99 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=161.1
Q ss_pred CCCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
..+.|+++||||+| .||.++++.|.++|++|++++|.........+.+.+.. ..++.++.+|+++++++.+++++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN--QPEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT--CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCcEEEEEccCCCHHHHHHHHHHH
Confidence 45679999999987 89999999999999999999986554444444444432 24788999999999998877654
Q ss_pred ----CCCcEEEEcccccCccC----Cc----cChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVGE----ST----LEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~~----~~----~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|++||+||+..... .. .+....+++|+.+...+...+... +-.++|++||....-.
T Consensus 81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~------- 153 (256)
T 4fs3_A 81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFA------- 153 (256)
T ss_dssp HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSC-------
T ss_pred HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccC-------
Confidence 57999999999754321 11 122345678888888877777644 2358999999655322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
......|+.+|...+.+.+.++.+ .|+++..|.||.+--+..... .-.+...+...+..|
T Consensus 154 ----~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~P 216 (256)
T 4fs3_A 154 ----VQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV-------------GGFNTILKEIKERAP 216 (256)
T ss_dssp ----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-------------TTHHHHHHHHHHHST
T ss_pred ----cccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc-------------cCCHHHHHHHHhcCC
Confidence 223578999999999999988876 689999999998866532210 112334444444444
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
+. -+...+|+|+++++++... .--.|+++.+.+|
T Consensus 217 -l~---------------R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 217 -LK---------------RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp -TS---------------SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CC---------------CCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 21 2457899999999988743 2234578888655
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-19 Score=159.23 Aligned_cols=229 Identities=13% Similarity=0.112 Sum_probs=161.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+|.++||||++.||+++++.|+++|.+|++++|.. +.+.+...++ ..++..+.+|++|++++.+++++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~---~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK---DVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998753 2333334444 35788899999999998887765
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++|||||...... ...++...+++|+.++..+.+++... .-.++|++||...+-..+
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~----------- 168 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTP----------- 168 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCT-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCC-----------
Confidence 47999999999764432 23455668889999999999888654 224799999976543222
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|.....+.+.++.+ .|+++..+.||.|--+......+..+ .....+.+...+..| +
T Consensus 169 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~--------~~~~~~~~~~~~~~P-l---- 235 (273)
T 4fgs_A 169 AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDP--------VQQQGLLNALAAQVP-M---- 235 (273)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CH--------HHHHHHHHHHHHHST-T----
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCc--------hhhHHHHHHHHhcCC-C----
Confidence 2568999999999999998877 57999999999987653221110000 111223334444333 2
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
.-+...+|+|.++++++.+. .--.|+++.+.+|
T Consensus 236 -----------gR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 236 -----------GRVGRAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp -----------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----------CCCcCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 12557899999999998743 2234578888655
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=161.36 Aligned_cols=225 Identities=15% Similarity=0.107 Sum_probs=161.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+|+++||||++.||+++++.|+++|.+|++.+|... ...+...++.....++..+.+|+++++++.+++++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~---~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRAT---LLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH---HHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 456699999999999999999999999999999877433 23333333333346788999999999999887765
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----h-cCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----A-HKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~-~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++|||||+..... ...+....+++|+.++..+.+++. + .+-.++|++||...+...+
T Consensus 83 ~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~-------- 154 (255)
T 4g81_D 83 EGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARP-------- 154 (255)
T ss_dssp TTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCT--------
T ss_pred HCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCC--------
Confidence 47999999999775443 234456678899999888776653 2 2446999999976653322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch--HHHHHHHhCCCCc
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS--GACFDAARGIIPG 266 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 266 (393)
....|+.+|.....+.+.++.+ .|+++..+.||.|.-+... .+. +.....+.+..|
T Consensus 155 ---~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~---------------~~~~~~~~~~~~~~~~P- 215 (255)
T 4g81_D 155 ---TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNT---------------ALIEDKQFDSWVKSSTP- 215 (255)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGH---------------HHHTCHHHHHHHHHHST-
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhh---------------cccCCHHHHHHHHhCCC-
Confidence 2568999999999999988877 6899999999998765211 110 122333333333
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
+. -+...+|+|.++++++... .--.|+++.+.+|
T Consensus 216 l~---------------R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 216 SQ---------------RWGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp TC---------------SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CC---------------CCcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 21 2456799999999988643 2234578888655
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-19 Score=172.79 Aligned_cols=227 Identities=16% Similarity=0.142 Sum_probs=163.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++||||||+|+||.+++++|.++|+ .|++++|.........+...++.....++.++.+|++|.+++.++++...+|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 458999999999999999999999999 5888888654333333333344333457889999999999999999766799
Q ss_pred EEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeeccee-ecCCCCCCCCCCCCCCCCChHH
Q 016208 127 AVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCAT-YGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 127 ~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~v-yg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
+|||+||+..... ........++.|+.++.++.+++... +.++||++||... +|.. ....|+
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~------------g~~~Ya 405 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA------------GQGAYA 405 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT------------TBHHHH
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC------------CCHHHH
Confidence 9999999865432 22334557789999999999999876 7789999999754 4321 257899
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|...|.+.+.+. ..|+++++++||.+-+.+... ... ...+..
T Consensus 406 aaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~--------------~~~---~~~~~~------------------ 449 (511)
T 2z5l_A 406 AANAALDALAERRR-AAGLPATSVAWGLWGGGGMAA--------------GAG---EESLSR------------------ 449 (511)
T ss_dssp HHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCC--------------CHH---HHHHHH------------------
T ss_pred HHHHHHHHHHHHHH-HcCCcEEEEECCcccCCcccc--------------ccc---HHHHHh------------------
Confidence 99999999998764 479999999999884322110 111 111110
Q ss_pred cccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHH
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKK 329 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~ 329 (393)
.....++.+|+++++..++..+.. .+.+. .+.|..+...+..
T Consensus 450 ~g~~~l~~e~~a~~l~~al~~~~~----~v~v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 450 RGLRAMDPDAAVDALLGAMGRNDV----CVTVV---DVDWERFAPATNA 491 (511)
T ss_dssp HTBCCBCHHHHHHHHHHHHHHTCS----EEEEC---CBCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCC----EEEEE---eCCHHHHHhhhcc
Confidence 012368899999999999987543 23243 3557777665543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=166.40 Aligned_cols=174 Identities=18% Similarity=0.139 Sum_probs=133.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhh---cCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQEL---FPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+++|+||||+|+||.+++++|+++|++|+++.|..+......+.+... .....++.++.+|+++.+++.++++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 478999999999999999999999999988877554433333333222 11125788999999999999999864
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|+||||||+..... ...+....+++|+.++.++++++ ++.+.+++|++||...+... .
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~-----------~ 150 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------P 150 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------T
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC-----------C
Confidence 25999999999754321 22345668899999999998885 44567899999997665321 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
....|+.||...|.+.+.++.+ .|+++++|+||.|..+-
T Consensus 151 ~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 2568999999999999998875 68999999999998763
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=168.33 Aligned_cols=222 Identities=14% Similarity=0.016 Sum_probs=156.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN--- 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--- 123 (393)
...++++||||+|.||.+++++|.++|++|++++|... .....+...+ .++.++.+|++|.+++.+++++.
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~-~~~l~~~~~~-----~~~~~~~~Dvtd~~~v~~~~~~~~~~ 284 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-AEDLKRVADK-----VGGTALTLDVTADDAVDKITAHVTEH 284 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG-HHHHHHHHHH-----HTCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc-HHHHHHHHHH-----cCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999987432 2222222222 25678999999999988877541
Q ss_pred ---CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc----CCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 124 ---AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH----KVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 124 ---~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.+|+|||+||+..... ........+++|+.++.++.+++... +..+||++||...+....
T Consensus 285 ~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~--------- 355 (454)
T 3u0b_A 285 HGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR--------- 355 (454)
T ss_dssp STTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT---------
T ss_pred cCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC---------
Confidence 4999999999875432 23345567889999999999999865 556999999977653322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|++++++.||.|..+.... +............+
T Consensus 356 --g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~---------------~~~~~~~~~~~~~~---- 414 (454)
T 3u0b_A 356 --GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEA---------------IPLATREVGRRLNS---- 414 (454)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-------------------------CHHHHHSBT----
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhh---------------cchhhHHHHHhhcc----
Confidence 3578999999888888877765 68999999999998763210 00000001111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+...+|+++++++++... ....++++++.++.
T Consensus 415 ------------l~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 415 ------------LFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred ------------ccCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 122467899999999988743 23345799887653
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-19 Score=155.20 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=162.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..++|+++||||++.||+++++.|.++|.+|++.+|... +...+.+.+ ...++..+.+|++|++++.++++..++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~g~i 80 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAK---DGGNASALLIDFADPLAAKDSFTDAGF 80 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHH---TTCCEEEEECCTTSTTTTTTSSTTTCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHhCCC
Confidence 456799999999999999999999999999999988532 233333333 246788999999999999988877789
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
|++|||||+..... ...++...+++|+.++..+.+++. +.+ -.++|++||...+-... ..
T Consensus 81 DiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~-----------~~ 149 (247)
T 4hp8_A 81 DILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI-----------RV 149 (247)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS-----------SC
T ss_pred CEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC-----------CC
Confidence 99999999765432 234456688899999888777643 333 46899999976543221 25
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch--HHHHHHHhCCCCceeEcC
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS--GACFDAARGIIPGLKIRG 271 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g 271 (393)
..|+.||.....+.+.++.+ .|+++..+.||.|--|... .+. +...+.+.+..| +.
T Consensus 150 ~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~---------------~~~~~~~~~~~~~~~~P-lg--- 210 (247)
T 4hp8_A 150 PSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTE---------------ALRADAARNKAILERIP-AG--- 210 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH---------------HHHTSHHHHHHHHTTCT-TS---
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchh---------------hcccCHHHHHHHHhCCC-CC---
Confidence 68999999999999988777 6899999999998654211 111 122333444444 21
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
-+...+|+|.++++++.... --.|+++.+.+|
T Consensus 211 ------------R~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 211 ------------RWGHSEDIAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp ------------SCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ------------CCcCHHHHHHHHHHHhCchhcCCcCCeEEECcc
Confidence 24567999999999887432 234578888555
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=156.26 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=142.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEE-e--CCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH-hh-C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIV-D--NLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF-AE-N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~-~ 123 (393)
+|+++||||+|+||++++++|+++|++|+++ + |... ...+...++ .+.++. |..+.+.+.+.+ +. .
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~---~~~~~~~~~----~~~~~~--~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAA---ERQRFESEN----PGTIAL--AEQKPERLVDATLQHGE 71 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH---HHHHHHHHS----TTEEEC--CCCCGGGHHHHHGGGSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHH---HHHHHHHHh----CCCccc--CHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999998 5 6432 122222222 122222 444444333322 21 3
Q ss_pred CCcEEEEcccccCc---cC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYV---GE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~---~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
++|+|||+||.... .. ...+....+++|+.++.++++++. +.+..++|++||...+...
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 141 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL---------- 141 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----------
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC----------
Confidence 79999999997644 21 223456688899999998888775 4556799999997766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCC---CCCCCCCCCCcccccccch-HHHHHHHhC-CC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDP---EGRLGEAPHPELREHGRIS-GACFDAARG-II 264 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 264 (393)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+.. . .+. ......... ..
T Consensus 142 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---------------~~~~~~~~~~~~~~~~ 205 (244)
T 1zmo_A 142 -AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTS---------------DWENNPELRERVDRDV 205 (244)
T ss_dssp -TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHH---------------HHHHCHHHHHHHHHHC
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccc---------------cccchHHHHHHHhcCC
Confidence 23578999999999999988776 589999999999876521 0 100 011111111 11
Q ss_pred CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 265 PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 265 ~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
| ...+...+|+|+++++++.... ...++.+.+.++
T Consensus 206 p----------------~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 206 P----------------LGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp T----------------TCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred C----------------CCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 1 1136789999999999987532 223468877655
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=157.44 Aligned_cols=172 Identities=17% Similarity=0.065 Sum_probs=127.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
+.+++++||||+|+||++++++|+++|++|++++|.........+.+... ..++.++.+|++|++++.++++.
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL---GGQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---SSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc---CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999988533222222222221 34688999999999998877643
Q ss_pred --CCCcEEEEccc--cc--------Cc-cCCccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCC
Q 016208 123 --NAFDAVMHFAA--VA--------YV-GESTLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKM 185 (393)
Q Consensus 123 --~~~d~Vi~~A~--~~--------~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~ 185 (393)
.++|+|||||| .. .. ..........+++|+.++.++.+.+. +.+..++|++||...+..
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 155 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY---- 155 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC----
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC----
Confidence 36899999994 32 01 11223345677788888876665553 456679999999776531
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCC
Q 016208 186 PITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSD 233 (393)
Q Consensus 186 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~ 233 (393)
.+...|+.+|...+.+.+.++.+ .|+++++++||.|..+.
T Consensus 156 --------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 156 --------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp --------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence 13468999999999999988765 58999999999998763
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-17 Score=147.61 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=152.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..++|++|||||++.||+++++.|.++|++|++++|...... ....++.+|+++++++.++++.
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL-------------PEELFVEADLTTKEGCAIVAEATRQ 74 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS-------------CTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC-------------CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999998543211 3445788999999998877654
Q ss_pred --CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|++|||||+.... ....+....+++|+.++..+.+++ ++.+-.++|++||....-..
T Consensus 75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~-------- 146 (261)
T 4h15_A 75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPL-------- 146 (261)
T ss_dssp HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCC--------
Confidence 4799999999965321 123345668889999887776654 44566799999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
+.....|+.+|...+.+.+.++.+ .|+++..+.||.|--+......... ......................|
T Consensus 147 --~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P-- 221 (261)
T 4h15_A 147 --PESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERL-AKQAGTDLEGGKKIIMDGLGGIP-- 221 (261)
T ss_dssp --TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHH-HHHTTCCHHHHHHHHHHHTTCCT--
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHH-HHhhccchhhHHHHHHHHhcCCC--
Confidence 112467999999999999888877 6899999999988653100000000 00000000000111111122222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
..-+...+|+|+++++++... .--.|+++.+.+|
T Consensus 222 --------------lgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 222 --------------LGRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp --------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------------CCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 223668899999999988643 2234578888655
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-20 Score=172.42 Aligned_cols=173 Identities=17% Similarity=0.133 Sum_probs=125.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
+|||+||||+||||++++..|+++|+ +|+++++... .........++.. ..+.++ +|+.+.+++.+++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~-~~~~~g~~~dl~~--~~~~~~-~di~~~~~~~~a~- 78 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA-MKALEGVVMELED--CAFPLL-AGLEATDDPKVAF- 78 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHT--TTCTTE-EEEEEESCHHHHT-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc-hhhccchhhhhhc--cccccc-CCeEeccChHHHh-
Confidence 37999999999999999999999986 8999876421 0101111111111 112223 5666656667778
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEeeccee-ecCCCCCCCC-CCC-CCCCC
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSSTCAT-YGEPDKMPIT-EST-PQKPI 196 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~SS~~v-yg~~~~~~~~-E~~-~~~p~ 196 (393)
.++|+|||+||..... ..+....++.|+.++.++++++++.+ .+ ++|++|+..- .. +.. |.. ...|.
T Consensus 79 -~~~D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p~ 150 (327)
T 1y7t_A 79 -KDADYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNPR 150 (327)
T ss_dssp -TTCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCGG
T ss_pred -CCCCEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCChh
Confidence 7899999999976532 35677899999999999999999885 54 7887776430 00 111 222 35567
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDP 234 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~ 234 (393)
++|+.+|+..|++...+++..|++.+++|+++|||++.
T Consensus 151 ~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 151 NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 78999999999999999988999999999999999864
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=151.83 Aligned_cols=230 Identities=11% Similarity=-0.017 Sum_probs=146.9
Q ss_pred CCCCcEEEEEcCC--ChhHHHHHHHHHHCCCeEEEEeCCCC--------CCchhhhhhhhhcCCC--CccEEEEcc----
Q 016208 46 EPGVTHVLVTGGA--GYIGSHAALRLLKDSYRVTIVDNLSR--------GNMGAVKVLQELFPQP--GQLQFIYAD---- 109 (393)
Q Consensus 46 ~~~~~~IlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~D---- 109 (393)
.+.+++++||||+ |+||++++++|+++|++|++++|... ... ..+.+.++.... .....+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRG-KFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTT-TTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhh-Hhhhhhhhccccccccccccccceecc
Confidence 3456899999999 99999999999999999999875310 000 011111111000 012333333
Q ss_pred ----CC----C--------HHHHHHHHhh-----CCCcEEEEcccccC--c----cCCccChHHHHHHHHHHHHHHHHHH
Q 016208 110 ----LG----D--------AKAVNKIFAE-----NAFDAVMHFAAVAY--V----GESTLEPLRYYHNITSNTLVILEAM 162 (393)
Q Consensus 110 ----l~----~--------~~~~~~~~~~-----~~~d~Vi~~A~~~~--~----~~~~~~~~~~~~~n~~~~~~ll~~~ 162 (393)
+. + ++++.+++++ .++|+||||||+.. . .....+....+++|+.++.++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 22 1 2233333321 47999999998642 1 1223345668899999999999999
Q ss_pred Hhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCC
Q 016208 163 AAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPE 235 (393)
Q Consensus 163 ~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~ 235 (393)
... ...++|++||...+...+ .. ..|+.+|...+.+.+.++.+ .|+++..++||.+.++...
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~ 232 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERIIP-----------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAK 232 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSCCT-----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSS
T ss_pred HHHhccCceEEEEeccccccCCC-----------CcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhh
Confidence 764 125899999976543211 13 47999999999999988765 5899999999999987532
Q ss_pred CCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecC
Q 016208 236 GRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGT 314 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~ 314 (393)
.. ...+..........| + ..+.+++|+|+++++++... ....++.+++.+
T Consensus 233 ~~-------------~~~~~~~~~~~~~~p-~---------------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdg 283 (297)
T 1d7o_A 233 AI-------------GFIDTMIEYSYNNAP-I---------------QKTLTADEVGNAAAFLVSPLASAITGATIYVDN 283 (297)
T ss_dssp CC-------------SHHHHHHHHHHHHSS-S---------------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred hc-------------cccHHHHHHhhccCC-C---------------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 10 122222232222222 1 12568999999999988743 222457899977
Q ss_pred CC
Q 016208 315 GK 316 (393)
Q Consensus 315 ~~ 316 (393)
+.
T Consensus 284 G~ 285 (297)
T 1d7o_A 284 GL 285 (297)
T ss_dssp TG
T ss_pred Cc
Confidence 64
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-18 Score=164.17 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=136.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~ 124 (393)
+++|||||+|.||.+++++|.++|+ .|++++|.........+...++.....++.++.+|++|.+++.+++++ .+
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~ 319 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAP 319 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSC
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 7999999999999999999999998 788888865444333333344433346889999999999999999865 26
Q ss_pred CcEEEEccccc-CccC----CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChH
Q 016208 125 FDAVMHFAAVA-YVGE----STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPY 199 (393)
Q Consensus 125 ~d~Vi~~A~~~-~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y 199 (393)
+|+|||+||+. .... ........++.|+.++.++.+.+...+.++||++||...+-... ....|
T Consensus 320 ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~-----------g~~~Y 388 (496)
T 3mje_A 320 LTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSG-----------GQPGY 388 (496)
T ss_dssp EEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCT-----------TCHHH
T ss_pred CeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCC-----------CcHHH
Confidence 89999999986 3221 22334568889999999999999988888999999966553322 25789
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 200 GKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 200 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
+.+|...+.+.+.+.. .|+++++|.||.+.+++
T Consensus 389 aAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~g 421 (496)
T 3mje_A 389 AAANAYLDALAEHRRS-LGLTASSVAWGTWGEVG 421 (496)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSC
T ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCc
Confidence 9999999999887654 79999999999987664
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-17 Score=160.10 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=156.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEE-eCCCCC----------CchhhhhhhhhcCCCCccEEEEccCCCHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIV-DNLSRG----------NMGAVKVLQELFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 115 (393)
..+++|||||+|.||.+++++|.++|.+ |+++ +|+... .....+.+.++......+.++.+|++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 4579999999999999999999999997 5555 676432 222223333332224678999999999999
Q ss_pred HHHHHhh----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcC-----CcEEEEeecceeecCC
Q 016208 116 VNKIFAE----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHK-----VKTLIYSSTCATYGEP 182 (393)
Q Consensus 116 ~~~~~~~----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~~V~~SS~~vyg~~ 182 (393)
+.+++++ ..+|+|||+||+..... ........+++|+.++.++.+++.... ..+||++||...+-..
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~ 409 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGG 409 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCC
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCC
Confidence 9999865 36899999999865432 223345678899999999999998775 6799999997665332
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccc-hHHHHHHHh
Q 016208 183 DKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRI-SGACFDAAR 261 (393)
Q Consensus 183 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 261 (393)
. ....|+.+|...+.+...+.. .|+++++|.||.+ +.+ .. -........
T Consensus 410 ~-----------g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~-~tg-----------------m~~~~~~~~~~~ 459 (525)
T 3qp9_A 410 A-----------GQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPW-EGS-----------------RVTEGATGERLR 459 (525)
T ss_dssp T-----------TCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCB-TTS-----------------GGGSSHHHHHHH
T ss_pred C-----------CCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcc-ccc-----------------cccchhhHHHHH
Confidence 2 257899999999988766543 6999999999998 321 11 011111111
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHH
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACK 328 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~ 328 (393)
.. | ...+..+++++++..++..+... +. +. .+.|..+...+.
T Consensus 460 ~~-------g-----------~~~l~pee~a~~l~~~l~~~~~~---v~-v~---~~dw~~~~~~~~ 501 (525)
T 3qp9_A 460 RL-------G-----------LRPLAPATALTALDTALGHGDTA---VT-IA---DVDWSSFAPGFT 501 (525)
T ss_dssp HT-------T-----------BCCBCHHHHHHHHHHHHHHTCSE---EE-EC---CBCHHHHHHHHH
T ss_pred hc-------C-----------CCCCCHHHHHHHHHHHHhCCCCe---EE-EE---eCCHHHHHhhcc
Confidence 10 1 12577999999999999875432 32 32 355666655543
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=164.79 Aligned_cols=217 Identities=13% Similarity=0.029 Sum_probs=142.2
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC------CCCchhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS------RGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
...+.+++++||||+|.||++++++|+++|++|++++|.. +......+...++...... ..+|+.+.+++.
T Consensus 14 ~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~D~~d~~~~~ 90 (613)
T 3oml_A 14 KLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE---AVADYNSVIDGA 90 (613)
T ss_dssp -CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC---EEECCCCGGGHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe---EEEEeCCHHHHH
Confidence 3456778999999999999999999999999999987721 1111122222222111112 347999888777
Q ss_pred HHHhh-----CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCC
Q 016208 118 KIFAE-----NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDK 184 (393)
Q Consensus 118 ~~~~~-----~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~ 184 (393)
++++. .++|+||||||+..... ...+....+++|+.++.++++++ ++.+..++|++||.+.+...
T Consensus 91 ~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~-- 168 (613)
T 3oml_A 91 KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGN-- 168 (613)
T ss_dssp HHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCC--
T ss_pred HHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC--
Confidence 77643 36999999999864432 23445668889999999988887 45566799999996654322
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
.....|+.+|...+.+.+.++.+ .|+++..+.|+.+- +... ..
T Consensus 169 ---------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~---------------~~--------- 214 (613)
T 3oml_A 169 ---------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTE---------------GI--------- 214 (613)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------C---------------CC---------
T ss_pred ---------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhh---------------hc---------
Confidence 13568999999999999988776 58999999998541 1000 00
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
........+..+|+|.++++++.......|+.+++.+|
T Consensus 215 ----------------~~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdGG 252 (613)
T 3oml_A 215 ----------------LPDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAG 252 (613)
T ss_dssp ----------------CCHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred ----------------cchhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECCC
Confidence 01112334578999999999887653334578887655
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=147.38 Aligned_cols=236 Identities=14% Similarity=0.029 Sum_probs=143.4
Q ss_pred CCCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCCC-------CCchhhhhhhhhcCCC--CccEEEEccC-----
Q 016208 47 PGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLSR-------GNMGAVKVLQELFPQP--GQLQFIYADL----- 110 (393)
Q Consensus 47 ~~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~Dl----- 110 (393)
+.+++++|||| +|+||.+++++|+++|++|++++|... ......+.+.++.... ..+.++.+|+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKP 86 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSST
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence 45589999999 899999999999999999999876320 0000111111211100 0134454443
Q ss_pred -------CC--------HHHHHHHHhh-----CCCcEEEEcccccC--c----cCCccChHHHHHHHHHHHHHHHHHHHh
Q 016208 111 -------GD--------AKAVNKIFAE-----NAFDAVMHFAAVAY--V----GESTLEPLRYYHNITSNTLVILEAMAA 164 (393)
Q Consensus 111 -------~~--------~~~~~~~~~~-----~~~d~Vi~~A~~~~--~----~~~~~~~~~~~~~n~~~~~~ll~~~~~ 164 (393)
++ .+++.+++++ .++|++|||||+.. . .....+....+++|+.++.++++++..
T Consensus 87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 166 (315)
T 2o2s_A 87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGP 166 (315)
T ss_dssp TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHST
T ss_pred chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 2233333322 47999999999642 1 112334566888999999999999865
Q ss_pred c--CCcEEEEeecceeecCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCCCCC
Q 016208 165 H--KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDPEGR 237 (393)
Q Consensus 165 ~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~~~~ 237 (393)
. .-.++|++||...+.... .. ..|+.+|...+.+.+.++.+ .|+++..++||.|..+.....
T Consensus 167 ~m~~~g~Iv~isS~~~~~~~~-----------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~ 235 (315)
T 2o2s_A 167 IMNEGGSAVTLSYLAAERVVP-----------GYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAI 235 (315)
T ss_dssp TEEEEEEEEEEEEGGGTSCCT-----------TCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHT
T ss_pred HHhcCCEEEEEecccccccCC-----------CccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhhhc
Confidence 4 125899999976543211 12 47999999999999887765 589999999999865410000
Q ss_pred CCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 238 LGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
..... ..+...+........| ...+...+|+|+++++++... ....|+.+.+.++.
T Consensus 236 -~~~~~------~~~~~~~~~~~~~~~p----------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 236 -GKSGE------KSFIDYAIDYSYNNAP----------------LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGL 292 (315)
T ss_dssp -TCSSS------SCHHHHHHHHHHHHSS----------------SCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred -ccccc------chhHHHHHHHHhccCC----------------CCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCCe
Confidence 00000 0111111111111112 112567899999999988743 22345788886653
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-16 Score=142.87 Aligned_cols=236 Identities=13% Similarity=0.017 Sum_probs=126.4
Q ss_pred CCCcEEEEEcC--CChhHHHHHHHHHHCCCeEEEEeCCC--------CCCchhh-----------hhhhhhcCCC---Cc
Q 016208 47 PGVTHVLVTGG--AGYIGSHAALRLLKDSYRVTIVDNLS--------RGNMGAV-----------KVLQELFPQP---GQ 102 (393)
Q Consensus 47 ~~~~~IlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~--------~~~~~~~-----------~~~~~~~~~~---~~ 102 (393)
+.+++++|||| +|+||.+++++|+++|++|++++|.. +...... +...++.... ..
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 45589999999 89999999999999999999987631 1100000 0011111000 01
Q ss_pred cEEEEccC------------CC--------HHHHHHHHhh-----CCCcEEEEcccccC--cc----CCccChHHHHHHH
Q 016208 103 LQFIYADL------------GD--------AKAVNKIFAE-----NAFDAVMHFAAVAY--VG----ESTLEPLRYYHNI 151 (393)
Q Consensus 103 ~~~~~~Dl------------~~--------~~~~~~~~~~-----~~~d~Vi~~A~~~~--~~----~~~~~~~~~~~~n 151 (393)
..++.+|+ ++ .+++.+++++ .++|+||||||+.. .. ....+....+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 34555443 22 1233333322 47999999999642 11 1233455688899
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----CCCcEEEE
Q 016208 152 TSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFSKT----TNMAVMIL 224 (393)
Q Consensus 152 ~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~il 224 (393)
+.++.++++++... .-.++|++||...+...+ .. ..|+.+|...+.+.+.++.+ .|+++..|
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~-----------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v 235 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVIP-----------GYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCI 235 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC-----------------------------THHHHHHHHHHHHHHHCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEeccccccccC-----------ccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEE
Confidence 99999999998764 125899999976553211 12 47999999999999887765 48999999
Q ss_pred eeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-C
Q 016208 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-K 303 (393)
Q Consensus 225 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~ 303 (393)
+||.|..+..... ..... ..+...+....... .....+..++|+|+++++++... .
T Consensus 236 ~PG~v~T~~~~~~-~~~~~------~~~~~~~~~~~~~~----------------~p~~r~~~peevA~~v~~L~s~~~~ 292 (319)
T 2ptg_A 236 SAGPLKSRAASAI-GKAGD------KTFIDLAIDYSEAN----------------APLQKELESDDVGRAALFLLSPLAR 292 (319)
T ss_dssp EECCCC------------------------------------------------------CCCHHHHHHHHHHHTSGGGT
T ss_pred eeCCccChhhhhc-ccccc------hhhHHHHHHHHhcc----------------CCCCCCCCHHHHHHHHHHHhCcccC
Confidence 9999876531100 00000 00000000000010 11123568999999999988742 2
Q ss_pred CCCcceEEecCCC
Q 016208 304 PGKVGIYNVGTGK 316 (393)
Q Consensus 304 ~~~~~~yni~~~~ 316 (393)
...++.+.+.++.
T Consensus 293 ~itG~~i~vdGG~ 305 (319)
T 2ptg_A 293 AVTGATLYVDNGL 305 (319)
T ss_dssp TCCSCEEEESTTC
T ss_pred CccCCEEEECCCc
Confidence 2345788886664
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=143.62 Aligned_cols=173 Identities=10% Similarity=-0.020 Sum_probs=120.5
Q ss_pred CcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCC---------CCCchhhhhhhhhcCCCCccEEEEccCCCH--H-
Q 016208 49 VTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLS---------RGNMGAVKVLQELFPQPGQLQFIYADLGDA--K- 114 (393)
Q Consensus 49 ~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~- 114 (393)
.++++||||++ .||.+++++|+++|++|++.+|.. .......+...........+.++.+|+.+. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 47899999875 999999999999999999776532 001111111111111123467888888876 5
Q ss_pred -----------------HHHHHHhh-----CCCcEEEEcccccC--cc----CCccChHHHHHHHHHHHHHHHHHHHhcC
Q 016208 115 -----------------AVNKIFAE-----NAFDAVMHFAAVAY--VG----ESTLEPLRYYHNITSNTLVILEAMAAHK 166 (393)
Q Consensus 115 -----------------~~~~~~~~-----~~~d~Vi~~A~~~~--~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 166 (393)
++.++++. .++|++|||||+.. .. .........+++|+.++..+.+++...-
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55554433 47999999999642 11 1233456688899999999999886541
Q ss_pred --CcEEEEeecceeecCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCC
Q 016208 167 --VKTLIYSSTCATYGEPDKMPITESTPQKPIN-PYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGS 232 (393)
Q Consensus 167 --~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~-~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~ 232 (393)
-.++|++||...+... .... .|+.||...+.+.+.++.+ .|+++..+.||.|-.+
T Consensus 162 ~~~g~Iv~isS~~~~~~~-----------~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 162 KPQSSIISLTYHASQKVV-----------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEECGGGTSCC-----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred hhCCeEEEEeCccccCCC-----------CcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 1589999997654221 1233 8999999999998887765 4899999999998654
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-14 Score=141.87 Aligned_cols=213 Identities=14% Similarity=0.083 Sum_probs=143.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC-CCHHHHH-HHHhh-
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL-GDAKAVN-KIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~-~~~~~- 122 (393)
.+.++.++||||++.||+++++.|.++|++|++.++. ......+.+... ...+..+.+|+ .+.+.+. ++.++
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~--~~~~~~~~i~~~---g~~~~~~~~Dv~~~~~~~~~~~~~~~ 393 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEIKAA---GGEAWPDQHDVAKDSEAIIKNVIDKY 393 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc--cHHHHHHHHHhc---CCeEEEEEcChHHHHHHHHHHHHHhc
Confidence 4566899999999999999999999999999998762 222333333322 24566677888 5555433 22222
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++|||||+..... ...+....+++|+.++..+.+++. +.+-.++|++||...+-...
T Consensus 394 G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~----------- 462 (604)
T 2et6_A 394 GTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNF----------- 462 (604)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC-----------
Confidence 57999999999764322 233456688899999888776653 44556999999965542211
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.||.....+.+.++.+ .|+++..|.|+. .. .+..... . ..
T Consensus 463 ~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~--~T------------------~m~~~~~----~-~~------ 511 (604)
T 2et6_A 463 GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA--ET------------------AMTLSIM----R-EQ------ 511 (604)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC--CC------------------CC-------------------
T ss_pred CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC--CC------------------ccccccC----c-hh------
Confidence 2468999999999999888776 689999999973 21 1110000 0 00
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
..+....+|+|.++++++.......++++.+.++
T Consensus 512 ----------~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdGG 545 (604)
T 2et6_A 512 ----------DKNLYHADQVAPLLVYLGTDDVPVTGETFEIGGG 545 (604)
T ss_dssp -----------CCSSCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred ----------hccCCCHHHHHHHHHHHhCCccCCCCcEEEECCC
Confidence 0123467999999998876433345578887665
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=135.60 Aligned_cols=234 Identities=13% Similarity=0.116 Sum_probs=147.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC------CCchhhhhhhhhcCCCCccEEEEccCCCHHHH-HHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR------GNMGAVKVLQELFPQPGQLQFIYADLGDAKAV-NKI 119 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~-~~~ 119 (393)
+.++.++||||++.||+++++.|.++|++|++.+|... ......+...++......+.....|+.+.+.+ .++
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~ 85 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA 85 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 45689999999999999999999999999999877431 11222222222211112222223344443333 222
Q ss_pred Hhh-CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 120 FAE-NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 120 ~~~-~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.+. .++|++|||||+..... ...+....+++|+.++..+.+++. +.+-.++|++||....-...
T Consensus 86 ~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~------- 158 (604)
T 2et6_A 86 VKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNF------- 158 (604)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC-------
Confidence 222 57999999999764322 233456688899999888776653 44556999999965542211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
....|+.+|...+.+.+.++.+ .|+++..|.|+ +-- .+.. ...+
T Consensus 159 ----~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T-------------------~m~~-------~~~~-- 205 (604)
T 2et6_A 159 ----GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARS-------------------RMTE-------SIMP-- 205 (604)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCC-------------------HHHH-------TTSC--
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcC-------------------cccc-------ccCC--
Confidence 2468999999999999988776 68999999995 210 1110 0000
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC------------------CcccHHHHHHHHHH
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG------------------KGRSVKEFVEACKK 329 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~------------------~~~s~~el~~~i~~ 329 (393)
.........+|++.++++++.......++++.+.++ ...+..++.+.+.+
T Consensus 206 ------------~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 273 (604)
T 2et6_A 206 ------------PPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSE 273 (604)
T ss_dssp ------------HHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHH
T ss_pred ------------hhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHH
Confidence 001123578999999999887553334567766543 23566788887776
Q ss_pred HhC
Q 016208 330 ATG 332 (393)
Q Consensus 330 ~~g 332 (393)
...
T Consensus 274 ~~~ 276 (604)
T 2et6_A 274 ILD 276 (604)
T ss_dssp HTC
T ss_pred hhc
Confidence 643
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=141.64 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=132.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHH-HCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC--
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLL-KDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN-- 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~-~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-- 123 (393)
..++++||||+|.||.+++++|. ++|. .|++++|+........+.+.++.....++.++.+|++|.+++.+++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 45799999999999999999999 7898 5888888754444444444444434567899999999999999998653
Q ss_pred --CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 124 --AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 124 --~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
.+|+|||+||+..... ...+....++.|+.++.++.+++.. .. +||++||.+.+-... ...
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~g~~-----------g~~ 675 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVLGSG-----------GQG 675 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHHTCS-----------SCH
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcCCCC-----------CCH
Confidence 5899999999865432 2234455777999999999998832 34 899999976553322 257
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCC
Q 016208 198 PYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGS 232 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~ 232 (393)
.|+.+|...+.+.++++. .|++++.|-||.+-.+
T Consensus 676 ~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 676 NYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred HHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 899999988888877655 7999999999988754
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-13 Score=125.60 Aligned_cols=174 Identities=13% Similarity=-0.009 Sum_probs=121.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeCCCCCCchh------------hhhhhhhcCCCCccEEEEccCCCH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGA------------VKVLQELFPQPGQLQFIYADLGDA 113 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~~~ 113 (393)
..++++|||||++.||.++++.|++ .|..|++++|........ .+.+.. ....+..+.+|+++.
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~---~G~~a~~i~~Dvtd~ 121 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ---KGLYAKSINGDAFSD 121 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH---TTCCEEEEESCTTSH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh---cCCceEEEECCCCCH
Confidence 4458999999999999999999999 999999998754432211 112222 235678899999999
Q ss_pred HHHHHHHhh-----CCCcEEEEcccccC-------------cc-------------------------CCccChHHHHHH
Q 016208 114 KAVNKIFAE-----NAFDAVMHFAAVAY-------------VG-------------------------ESTLEPLRYYHN 150 (393)
Q Consensus 114 ~~~~~~~~~-----~~~d~Vi~~A~~~~-------------~~-------------------------~~~~~~~~~~~~ 150 (393)
+++.++++. .++|++||+||... .. ....+....+++
T Consensus 122 ~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~V 201 (405)
T 3zu3_A 122 EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAV 201 (405)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHh
Confidence 998877654 47999999999741 00 122234445667
Q ss_pred HHHHHH-HHHHHHHhcC----CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---C-CCcE
Q 016208 151 ITSNTL-VILEAMAAHK----VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---T-NMAV 221 (393)
Q Consensus 151 n~~~~~-~ll~~~~~~~----~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~-g~~~ 221 (393)
|..+.. .++.++.... -.++|.+||....-.. |......|+.+|...+.+.+.++.+ . |+++
T Consensus 202 n~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~---------p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRV 272 (405)
T 3zu3_A 202 MGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH---------DIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDA 272 (405)
T ss_dssp HSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT---------TTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred hchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC---------CCccchHHHHHHHHHHHHHHHHHHHhCcccCeEE
Confidence 766554 4555543221 2479999996543211 1111378999999999999988877 5 8999
Q ss_pred EEEeeccccCC
Q 016208 222 MILRYFNVIGS 232 (393)
Q Consensus 222 ~ilRp~~v~G~ 232 (393)
.++.||.+--+
T Consensus 273 NaVaPG~i~T~ 283 (405)
T 3zu3_A 273 RVSVLKAVVSQ 283 (405)
T ss_dssp EEEECCCCCCH
T ss_pred EEEEeCCCcCc
Confidence 99999988654
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=146.71 Aligned_cols=172 Identities=16% Similarity=0.090 Sum_probs=123.5
Q ss_pred CCCcEEEEEcCCCh-hHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhh-hhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 47 PGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVL-QELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
+.++++|||||+|. ||.++++.|+++|++|+++++..... ....+.+ .++......+.++.+|+++.+++.++++.
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i 729 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI 729 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45589999999999 99999999999999999986433221 1122222 23322235688999999999999888753
Q ss_pred --C------CCcEEEEcccccCcc-CCc------cChHHHHHHHHHHHHHHHHHHHhc------CCcEEEEeecceeecC
Q 016208 123 --N------AFDAVMHFAAVAYVG-EST------LEPLRYYHNITSNTLVILEAMAAH------KVKTLIYSSTCATYGE 181 (393)
Q Consensus 123 --~------~~d~Vi~~A~~~~~~-~~~------~~~~~~~~~n~~~~~~ll~~~~~~------~~~~~V~~SS~~vyg~ 181 (393)
. ++|+||||||+.... ... ......+++|+.++.++++.++.. +..+||++||...+..
T Consensus 730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g 809 (1878)
T 2uv9_A 730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG 809 (1878)
T ss_dssp HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence 2 599999999976432 111 234668889999999888774321 2258999999654321
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccC
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIG 231 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G 231 (393)
....|+.+|...+.+...+..+ .+++++.+.||.+-|
T Consensus 810 -------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~g 849 (1878)
T 2uv9_A 810 -------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRG 849 (1878)
T ss_dssp -------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCC
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceec
Confidence 1458999999999987765433 239999999998873
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=130.70 Aligned_cols=173 Identities=15% Similarity=-0.011 Sum_probs=119.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeCCCCCCchh------------hhhhhhhcCCCCccEEEEccCCCHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGA------------VKVLQELFPQPGQLQFIYADLGDAK 114 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~Dl~~~~ 114 (393)
.++++|||||++.||.++++.|.+ .|.+|++++|........ .+.+.. ....+..+.+|+++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~---~G~~a~~i~~Dvtd~~ 136 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA---AGLYSKSINGDAFSDA 136 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH---TTCCEEEEESCTTSHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHh---cCCcEEEEEecCCCHH
Confidence 358999999999999999999999 999999998865433221 122222 2356788999999999
Q ss_pred HHHHHHhh------CCCcEEEEccccc-------------Ccc-------------------------CCccChHHHHHH
Q 016208 115 AVNKIFAE------NAFDAVMHFAAVA-------------YVG-------------------------ESTLEPLRYYHN 150 (393)
Q Consensus 115 ~~~~~~~~------~~~d~Vi~~A~~~-------------~~~-------------------------~~~~~~~~~~~~ 150 (393)
++.++++. .++|++||+||.. ... ....+....+++
T Consensus 137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V 216 (422)
T 3s8m_A 137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV 216 (422)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence 88877653 3689999999862 110 111222334445
Q ss_pred HHHHHH-HHHHHHHhcC----CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEE
Q 016208 151 ITSNTL-VILEAMAAHK----VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVM 222 (393)
Q Consensus 151 n~~~~~-~ll~~~~~~~----~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ 222 (393)
|..+.. .++.++.... -.++|.+||....-.. |......|+.||...+.+.+.++.+ .|+++.
T Consensus 217 n~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~---------p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVN 287 (422)
T 3s8m_A 217 MGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITW---------PIYWHGALGKAKVDLDRTAQRLNARLAKHGGGAN 287 (422)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH---------HHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred hchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC---------CCccchHHHHHHHHHHHHHHHHHHHhCccCEEEE
Confidence 544443 4555554322 2479999996543111 1111268999999999999988777 689999
Q ss_pred EEeeccccCC
Q 016208 223 ILRYFNVIGS 232 (393)
Q Consensus 223 ilRp~~v~G~ 232 (393)
.+.||.|--+
T Consensus 288 aVaPG~i~T~ 297 (422)
T 3s8m_A 288 VAVLKSVVTQ 297 (422)
T ss_dssp EEEECCCCCT
T ss_pred EEEcCCCcCh
Confidence 9999998765
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=147.39 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=125.4
Q ss_pred CCCcEEEEEcCCCh-hHHHHHHHHHHCCCeEEEEe-CCCCCCchhhhhh-hhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 47 PGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVL-QELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
+.++++|||||+|. ||.++++.|+++|++|++++ |.........+.+ .++......+.++.+|+++.+++.++++.
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i 752 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 752 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence 45689999999999 99999999999999999984 4322222222222 22222235688999999999999887753
Q ss_pred --C--------CCcEEEEcccccCcc-CC------ccChHHHHHHHHHHHHHHHHHHHhcC------CcEEEEeecceee
Q 016208 123 --N--------AFDAVMHFAAVAYVG-ES------TLEPLRYYHNITSNTLVILEAMAAHK------VKTLIYSSTCATY 179 (393)
Q Consensus 123 --~--------~~d~Vi~~A~~~~~~-~~------~~~~~~~~~~n~~~~~~ll~~~~~~~------~~~~V~~SS~~vy 179 (393)
. ++|+||||||+.... .. .......+++|+.++..+++.++... ..+||++||...+
T Consensus 753 ~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~ 832 (1887)
T 2uv8_A 753 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 832 (1887)
T ss_dssp HSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTC
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhc
Confidence 2 599999999976432 11 22346688899999999998874332 2589999996443
Q ss_pred cCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHhhCC--CcEEEEeeccccC
Q 016208 180 GEPDKMPITESTPQKPINPYGKAKKMSEDI-IIDFSKTTN--MAVMILRYFNVIG 231 (393)
Q Consensus 180 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--~~~~ilRp~~v~G 231 (393)
.. ....|+.+|...+.+ .+.++.+.+ ++++.+.||.+-+
T Consensus 833 ~g-------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 833 FG-------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 874 (1887)
T ss_dssp SS-------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEEC
T ss_pred cC-------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 21 246899999999998 566555433 9999999999985
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-14 Score=146.58 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=122.3
Q ss_pred CCCcEEEEEcCCCh-hHHHHHHHHHHCCCeEEEEe-CCCCCCchhhhhhh-hhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 47 PGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVLQ-ELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
+.++++|||||+|. ||.++++.|+++|++|++++ |.........+.+. ++......+.++.+|+++.+++.++++.
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I 553 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 553 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 45589999999998 99999999999999999984 54333332323331 1111234688899999999998877753
Q ss_pred --C--------CCcEEEEcccccCcc-CC------ccChHHHHHHHHHHHHHHHHHHHhc------CCcEEEEeecceee
Q 016208 123 --N--------AFDAVMHFAAVAYVG-ES------TLEPLRYYHNITSNTLVILEAMAAH------KVKTLIYSSTCATY 179 (393)
Q Consensus 123 --~--------~~d~Vi~~A~~~~~~-~~------~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~~V~~SS~~vy 179 (393)
. ++|+|||+||+.... .. .......+++|+.++.++++.++.. +..+||++||...+
T Consensus 554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~ 633 (1688)
T 2pff_A 554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 633 (1688)
T ss_dssp HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence 2 599999999976432 11 1234567889999999999887322 12589999995433
Q ss_pred cCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHhhC--CCcEEEEeeccccC
Q 016208 180 GEPDKMPITESTPQKPINPYGKAKKMSEDI-IIDFSKTT--NMAVMILRYFNVIG 231 (393)
Q Consensus 180 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~--g~~~~ilRp~~v~G 231 (393)
.. ....|+.+|+..+.+ .+.++.+. .+++..+.||.+-|
T Consensus 634 ~G-------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 634 FG-------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp SS-------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred cC-------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 11 246899999999998 44444432 28888899998875
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-12 Score=120.58 Aligned_cols=177 Identities=13% Similarity=-0.012 Sum_probs=118.3
Q ss_pred CCCcEEEEEcCCChhHHH--HHHHHHHCCCeEEEEeCCCCCCchh--------hhhhhh-hcCCCCccEEEEccCCCHHH
Q 016208 47 PGVTHVLVTGGAGYIGSH--AALRLLKDSYRVTIVDNLSRGNMGA--------VKVLQE-LFPQPGQLQFIYADLGDAKA 115 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~Dl~~~~~ 115 (393)
..++++|||||++.||.+ +++.|.+.|++|++++|........ .+.+.+ .......+..+.+|+++.++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 345899999999999999 9999999999999998864432211 111111 11123568889999999998
Q ss_pred HHHHHhh-----CCCcEEEEccccc-------------Ccc-------------------------CCccChHHHHHHHH
Q 016208 116 VNKIFAE-----NAFDAVMHFAAVA-------------YVG-------------------------ESTLEPLRYYHNIT 152 (393)
Q Consensus 116 ~~~~~~~-----~~~d~Vi~~A~~~-------------~~~-------------------------~~~~~~~~~~~~n~ 152 (393)
+.++++. .++|++||+||.. ... ....+....+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 8877654 3699999999974 100 01112233444444
Q ss_pred HHHH-HHHHHHHhcC----CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEE
Q 016208 153 SNTL-VILEAMAAHK----VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMI 223 (393)
Q Consensus 153 ~~~~-~ll~~~~~~~----~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~i 223 (393)
.+.. .++.++.... -.++|.+||.+..-.. |......|+.+|...+.+.+.++.+ .|+++.+
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~---------p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~ 288 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY---------KIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFV 288 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT---------TTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC---------CccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEE
Confidence 4333 4455544332 2479999986433111 1111378999999999999888776 4799999
Q ss_pred EeeccccCC
Q 016208 224 LRYFNVIGS 232 (393)
Q Consensus 224 lRp~~v~G~ 232 (393)
+.||.|--+
T Consensus 289 V~PG~v~T~ 297 (418)
T 4eue_A 289 SVNKALVTK 297 (418)
T ss_dssp EECCCCCCH
T ss_pred EECCcCcCh
Confidence 999988654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=94.01 Aligned_cols=97 Identities=27% Similarity=0.257 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.||+|+|+|+ |++|+++++.|.+.| ++|++++|.... .+.+. ..++.++.+|+.+.+++.+++ .++|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~----~~~~~-----~~~~~~~~~d~~~~~~~~~~~--~~~d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAA----LAVLN-----RMGVATKQVDAKDEAGLAKAL--GGFD 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHH----HHHHH-----TTTCEEEECCTTCHHHHHHHT--TTCS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHH----HHHHH-----hCCCcEEEecCCCHHHHHHHH--cCCC
Confidence 3589999999 999999999999999 999999884321 11111 247888999999999999998 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
+|||+++.. ....+++.|.+.+++++...+
T Consensus 72 ~vi~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 72 AVISAAPFF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp EEEECSCGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred EEEECCCch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 999998532 135788999999986554433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.1e-11 Score=134.20 Aligned_cols=173 Identities=13% Similarity=0.051 Sum_probs=123.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCe-EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYR-VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..++++||||+|.||.++++.|.++|.+ |++++|+........+.+.++.....++.++.+|+++.+++.++++.
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999999997 77777765444333333333322235678899999999998877654
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
..+|+|||+||+..... ...+....+++|+.++.++.+++... ...+||++||....-... ..
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~-----------g~ 2031 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNA-----------GQ 2031 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCT-----------TC
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCC-----------Cc
Confidence 47999999999754321 23344556779999999998887654 346899999976543222 25
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCC
Q 016208 197 NPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGS 232 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~ 232 (393)
..|+.+|...+.+.+.... .|++...+-++.+-+.
T Consensus 2032 ~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2032 ANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCTT
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCCc
Confidence 6899999999999987554 6899999988776443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-11 Score=114.44 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=113.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCC----CCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNL----SRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
.|||+||||+||+|++++..|+..|. +|.++++. ..........+.+. .... ..|+....++.
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~---~~~~---~~~i~~~~~~~ 78 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC---AFPL---LAGMTAHADPM 78 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT---TCTT---EEEEEEESSHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh---cccc---cCcEEEecCcH
Confidence 47999999999999999999999885 89988764 11011111112221 0011 13444444567
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEeeccee---ecCCCCCCCCCCC-
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSSTCAT---YGEPDKMPITEST- 191 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~SS~~v---yg~~~~~~~~E~~- 191 (393)
+++ .++|+|||+||.... ........+..|+..+.++++.+.+.+ .+ ++|++|...- |-. .+..
T Consensus 79 ~al--~~aD~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~------~~~~~ 148 (329)
T 1b8p_A 79 TAF--KDADVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA------MKSAP 148 (329)
T ss_dssp HHT--TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH------HHTCT
T ss_pred HHh--CCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH------HHHcC
Confidence 778 799999999996542 234556788999999999999999884 55 8888886210 000 0111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
-..+...|+.+++...++...+++..|++...++...|+|..
T Consensus 149 ~~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 149 SLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp TSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred CCCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 112234578888888888888888888887788866788853
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=100.93 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|||+|+||+|++|++++..|+..| ++|+++++... ......+.... ....+ .+ +.+..++.+++ .++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~---~~~~v-~~-~~~t~d~~~al--~ga 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMD---TGAVV-RG-FLGQQQLEAAL--TGM 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSC---SSCEE-EE-EESHHHHHHHH--TTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhccc---ccceE-EE-EeCCCCHHHHc--CCC
Confidence 44899999999999999999999998 89999886432 11111122211 11111 22 23456777888 899
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+|||+|+..... .......+..|+..++++++.+.+.+.+.+|+++|
T Consensus 78 DvVi~~ag~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 78 DLIIVPAGVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp SEEEECCCCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 9999999965322 22345678999999999999999988777888777
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=121.72 Aligned_cols=174 Identities=11% Similarity=0.072 Sum_probs=116.1
Q ss_pred CCCcEEEEEcCCCh-hHHHHHHHHHHCCCeEEEEeCCCCCC-ch-hhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 47 PGVTHVLVTGGAGY-IGSHAALRLLKDSYRVTIVDNLSRGN-MG-AVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~-~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
..+++++||||++. ||.++++.|++.|.+|++++|..... .. ..+...++......+..+.+|+++.+++.++++.
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 45689999999999 99999999999999999998854321 01 2222233333335678899999999998887543
Q ss_pred --------CCCcEEEEcccc----cCcc-----CCccCh----HHHHHHHHHHHHHHHHHHHh----cCCc---EEEEee
Q 016208 123 --------NAFDAVMHFAAV----AYVG-----ESTLEP----LRYYHNITSNTLVILEAMAA----HKVK---TLIYSS 174 (393)
Q Consensus 123 --------~~~d~Vi~~A~~----~~~~-----~~~~~~----~~~~~~n~~~~~~ll~~~~~----~~~~---~~V~~S 174 (393)
.++|++|||||+ .... ....+. ...+++|+.++..++..+.. .+.. .+|..+
T Consensus 2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D 2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence 358999999997 1110 011122 23478888888777766543 3321 122222
Q ss_pred cceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCC
Q 016208 175 TCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGS 232 (393)
Q Consensus 175 S~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~ 232 (393)
|. ..+. ......|+.||...+.+.+.++.+ .+++++.+.||.+-+.
T Consensus 2294 ss-~~g~-----------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT 2343 (3089)
T 3zen_D 2294 SP-NRGM-----------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGT 2343 (3089)
T ss_dssp CS-STTS-----------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECS
T ss_pred Cc-cccc-----------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCC
Confidence 21 1111 012347999999999999998887 3578889999888654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=98.36 Aligned_cols=171 Identities=14% Similarity=0.130 Sum_probs=103.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeC--CCCCCchhhhhhhhhcCCC-CccEEEEccCCCHHHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDN--LSRGNMGAVKVLQELFPQP-GQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|||+||||+||+|++++..|+..|. ++..+++ ...........+....... ..+.+...+ +++.+++ .+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al--~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRII--DE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGG--TT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHh--CC
Confidence 5899999999999999999998875 6777776 2110111111122211111 233333322 1234557 79
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHH-HH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGK-AK 203 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~-sK 203 (393)
+|+|||+||.... ........+..|+..++++++++.+.+ +++|+++|.=+.-... ...+.....|...+|. +.
T Consensus 75 aD~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~--~~~k~~~~p~~rviG~gt~ 149 (313)
T 1hye_A 75 SDVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTY--KALVDSKFERNQVFGLGTH 149 (313)
T ss_dssp CSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHH--HHHHHHCCCTTSEEECTTH
T ss_pred CCEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHH--HHHHhhCcChhcEEEeCcc
Confidence 9999999996532 233456789999999999999999998 8888888732210000 0000112334556666 55
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCC
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGS 232 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~ 232 (393)
+...++....++..|++..-++. .++|.
T Consensus 150 LD~~r~~~~la~~lgv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 150 LDSLRFKVAIAKFFGVHIDEVRT-RIIGE 177 (313)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred HHHHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence 55666666666666776555663 56663
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=93.98 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=78.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeC--CCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDN--LSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|||+||||+|++|++++..|+..|. ++..+++ ...........+.+.......+.+...| .+++ .++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~-------~~a~--~~a 71 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG-------YEDT--AGS 71 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC-------GGGG--TTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC-------HHHh--CCC
Confidence 6899999999999999999998875 6777766 2211111112222211111234443322 3346 799
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+|||+|+..... .......+..|+..++++++++.+.+.+.+|+++|
T Consensus 72 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 72 DVVVITAGIPRQP--GQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 9999999965322 23445678999999999999999998778888877
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-08 Score=93.60 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+++++||||+|.+|+++++.|+++|++|++++|.........+.+... .++.++.+|+++.+++.+++ ..+|
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~----~~~~~~~~D~~~~~~~~~~~--~~~D 190 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR----FKVNVTAAETADDASRAEAV--KGAH 190 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----HTCCCEEEECCSHHHHHHHT--TTCS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEecCCCHHHHHHHH--HhCC
Confidence 45589999999999999999999999999999988533222222222211 24667889999999999998 6799
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+|+..
T Consensus 191 vlVn~ag~g 199 (287)
T 1lu9_A 191 FVFTAGAIG 199 (287)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCcc
Confidence 999999854
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=80.71 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d 126 (393)
.|++|+|+|+ |.+|+.+++.|.+.|++|+++++... ..+.+.. .+..++.+|..+.+.+.++ + .++|
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~----~~~~~~~-----~~~~~~~~d~~~~~~l~~~~~--~~~d 72 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE----KVNAYAS-----YATHAVIANATEENELLSLGI--RNFE 72 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH----HHHTTTT-----TCSEEEECCTTCHHHHHTTTG--GGCS
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH-----hCCEEEEeCCCCHHHHHhcCC--CCCC
Confidence 4578999997 99999999999999999999987421 1111111 2456788999998877765 4 6799
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+||++++.. .+.| ..+.+.+++.+.+++|..++
T Consensus 73 ~vi~~~~~~------------~~~~----~~~~~~~~~~~~~~ii~~~~ 105 (144)
T 2hmt_A 73 YVIVAIGAN------------IQAS----TLTTLLLKELDIPNIWVKAQ 105 (144)
T ss_dssp EEEECCCSC------------HHHH----HHHHHHHHHTTCSEEEEECC
T ss_pred EEEECCCCc------------hHHH----HHHHHHHHHcCCCeEEEEeC
Confidence 999998631 0122 23566777778777776555
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=93.63 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=75.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC---CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|++|+|+|| |++|+.+++.|.+.| .+|++.+|.........+.+.... ..++..+.+|+.+.+++.+++++.++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~--~~~~~~~~~D~~d~~~l~~~l~~~~~ 77 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG--YGEIDITTVDADSIEELVALINEVKP 77 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT--CCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc--CCceEEEEecCCCHHHHHHHHHhhCC
Confidence 689999998 999999999999998 389998885433332222222110 13688899999999999999965569
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
|+|||+++... ...++++|.+.++. +|-++
T Consensus 78 DvVin~ag~~~------------------~~~v~~a~l~~g~~-vvD~a 107 (405)
T 4ina_A 78 QIVLNIALPYQ------------------DLTIMEACLRTGVP-YLDTA 107 (405)
T ss_dssp SEEEECSCGGG------------------HHHHHHHHHHHTCC-EEESS
T ss_pred CEEEECCCccc------------------ChHHHHHHHHhCCC-EEEec
Confidence 99999997421 13677888888874 44443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-08 Score=95.17 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.|++|+|+| +|++|+++++.|.+.|++|++++|.... .+.+. ..-.++..+.+|+.+.+++.+++ .++|+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~----a~~la---~~~~~~~~~~~Dv~d~~~l~~~l--~~~Dv 71 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLES----AKKLS---AGVQHSTPISLDVNDDAALDAEV--AKHDL 71 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHH----HHHTT---TTCTTEEEEECCTTCHHHHHHHH--TTSSE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHH----HHHHH---HhcCCceEEEeecCCHHHHHHHH--cCCcE
Confidence 468999998 8999999999999999999998874321 11111 11134678889999999999998 68999
Q ss_pred EEEcccccCccCCccChHHHHHH--H-------HHHHHHHHHHHHhcCCc
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHN--I-------TSNTLVILEAMAAHKVK 168 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~--n-------~~~~~~ll~~~~~~~~~ 168 (393)
|||+++..... ......++. + ...+.+++++|+++|++
T Consensus 72 VIn~a~~~~~~---~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 72 VISLIPYTFHA---TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp EEECCC--CHH---HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred EEECCccccch---HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 99999864221 011122221 1 23578899999999873
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=76.52 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..|++|+|+|+ |.+|+++++.|.+.|++|+++++... ..+.+.. .++.++.+|.++++.+.++- -.++|
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~----~~~~~~~-----~~~~~~~gd~~~~~~l~~~~-~~~~d 72 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE----KIELLED-----EGFDAVIADPTDESFYRSLD-LEGVS 72 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHH-----TTCEEEECCTTCHHHHHHSC-CTTCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH----HHHHHHH-----CCCcEEECCCCCHHHHHhCC-cccCC
Confidence 34679999997 99999999999999999999987432 2222222 36788999999999888762 15799
Q ss_pred EEEEccc
Q 016208 127 AVMHFAA 133 (393)
Q Consensus 127 ~Vi~~A~ 133 (393)
+||.+.+
T Consensus 73 ~vi~~~~ 79 (141)
T 3llv_A 73 AVLITGS 79 (141)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998765
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-07 Score=73.76 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=68.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~ 127 (393)
+|+|+|+|+ |++|..+++.|.+.|++|+++++... ..+.+... .++.++.+|..+.+.+.+. + .++|+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~----~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~--~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD----ICKKASAE----IDALVINGDCTKIKTLEDAGI--EDADM 72 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH----CSSEEEESCTTSHHHHHHTTT--TTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHHh----cCcEEEEcCCCCHHHHHHcCc--ccCCE
Confidence 479999996 99999999999999999999987422 12222211 2567788999998887654 4 58999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
||++.... ..| ..+.+.++..+.+++|..+
T Consensus 73 vi~~~~~~-------------~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 73 YIAVTGKE-------------EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp EEECCSCH-------------HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred EEEeeCCc-------------hHH----HHHHHHHHHcCCCEEEEEe
Confidence 99996421 112 2455667777766776543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=89.37 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+.+.|||+|+|| |++|+.+++.|.+ .++|.+.++..+... .+ ...+..+..|+.|.+++.+++ .+
T Consensus 12 ~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~-------~~---~~~~~~~~~d~~d~~~l~~~~--~~ 77 (365)
T 3abi_A 12 IEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLE-------KV---KEFATPLKVDASNFDKLVEVM--KE 77 (365)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHH-------HH---TTTSEEEECCTTCHHHHHHHH--TT
T ss_pred ccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHH-------HH---hccCCcEEEecCCHHHHHHHH--hC
Confidence 4455579999998 9999999998854 589998877432211 11 246677889999999999999 78
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
+|+||++++... ...++++|.++|+ ++|=+|
T Consensus 78 ~DvVi~~~p~~~------------------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 78 FELVIGALPGFL------------------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp CSEEEECCCGGG------------------HHHHHHHHHHHTC-EEEECC
T ss_pred CCEEEEecCCcc------------------cchHHHHHHhcCc-ceEeee
Confidence 999999986431 2368899999987 677655
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=80.51 Aligned_cols=89 Identities=15% Similarity=-0.000 Sum_probs=65.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHH-HCCCeEEEEeCCCCCCchhh---------hhhhhhcCCCCccEEEEccCCCHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLL-KDSYRVTIVDNLSRGNMGAV---------KVLQELFPQPGQLQFIYADLGDAKAV 116 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~~Dl~~~~~~ 116 (393)
...|++|||||+..+|.+.+..|. ..|..|+++.+......... ...+...........+.+|+++++.+
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 345899999999999999999998 67899999887544332210 11111112245778999999999998
Q ss_pred HHHHhh-----CCCcEEEEccccc
Q 016208 117 NKIFAE-----NAFDAVMHFAAVA 135 (393)
Q Consensus 117 ~~~~~~-----~~~d~Vi~~A~~~ 135 (393)
.++++. .++|++||++|..
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred HHHHHHHHHhcCCCCEEEEecccc
Confidence 887765 5799999999965
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-07 Score=78.86 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=56.4
Q ss_pred CCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC
Q 016208 48 GVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111 (393)
Q Consensus 48 ~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 111 (393)
.+|+|||||| ||.+|.+++++|..+|++|+.++|...... ..+.++..+ |+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~----------~~~~~~~~~--~v~ 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP----------EPHPNLSIR--EIT 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC----------CCCTTEEEE--ECC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc----------cCCCCeEEE--EHh
Confidence 3589999999 999999999999999999999988542111 001244444 555
Q ss_pred CHHHHHHHHhh--CCCcEEEEcccccCcc
Q 016208 112 DAKAVNKIFAE--NAFDAVMHFAAVAYVG 138 (393)
Q Consensus 112 ~~~~~~~~~~~--~~~d~Vi~~A~~~~~~ 138 (393)
..+++.+.+.+ .++|++||+||+.++.
T Consensus 70 s~~em~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCcccccc
Confidence 66554444322 5799999999987654
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-07 Score=77.48 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC
Q 016208 47 PGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110 (393)
Q Consensus 47 ~~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 110 (393)
+.+++|||||| ||.+|.+++++|.++|++|+++++...-.. +.++. ..|+
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~------------~~g~~--~~dv 71 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT------------PPFVK--RVDV 71 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC------------CTTEE--EEEC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccccc------------CCCCe--EEcc
Confidence 56689999999 799999999999999999999877442100 12333 4688
Q ss_pred CCHHHHHHHHhh--CCCcEEEEcccccCc
Q 016208 111 GDAKAVNKIFAE--NAFDAVMHFAAVAYV 137 (393)
Q Consensus 111 ~~~~~~~~~~~~--~~~d~Vi~~A~~~~~ 137 (393)
.+.+++.+.+.+ .++|++||+||+.++
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCcccCC
Confidence 888776555432 469999999998754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-06 Score=69.81 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-Hhh
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAE 122 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~ 122 (393)
+.....++|+|+|+ |.+|..+++.|.+.|++|++++|...... .+.. ..++.++.+|..+.+.+.++ +
T Consensus 14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~----~~~~----~~g~~~~~~d~~~~~~l~~~~~-- 82 (155)
T 2g1u_A 14 SKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFH----RLNS----EFSGFTVVGDAAEFETLKECGM-- 82 (155)
T ss_dssp ---CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGG----GSCT----TCCSEEEESCTTSHHHHHTTTG--
T ss_pred hcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH----HHHh----cCCCcEEEecCCCHHHHHHcCc--
Confidence 34455689999995 99999999999999999999987532211 1110 13567788999888777654 4
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHh-cCCcEEEEeec
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA-HKVKTLIYSST 175 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~~~~V~~SS 175 (393)
.++|+||.+.+.. .. ...+++.++. .+..++|...+
T Consensus 83 ~~ad~Vi~~~~~~-------------~~----~~~~~~~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 83 EKADMVFAFTNDD-------------ST----NFFISMNARYMFNVENVIARVY 119 (155)
T ss_dssp GGCSEEEECSSCH-------------HH----HHHHHHHHHHTSCCSEEEEECS
T ss_pred ccCCEEEEEeCCc-------------HH----HHHHHHHHHHHCCCCeEEEEEC
Confidence 5799999887531 11 2345556665 55556665444
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=80.52 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=77.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|+||+|++|+.++..|+..| ++|.++++.. .......+.+... ...+....+ ..++.+++ .++|+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~-~~~l~~~~~----t~d~~~a~--~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIET-RATVKGYLG----PEQLPDCL--KGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSS-SCEEEEEES----GGGHHHHH--TTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCc-CceEEEecC----CCCHHHHh--CCCCE
Confidence 589999999999999999999888 7999998854 2222222222111 011222211 12346667 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS 175 (393)
||++|+..... .......+..|+..++.+++.+.+.... ++|++|-
T Consensus 72 Vvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 72 VVIPAGVPRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEECCSCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999875322 2334567889999999999999887533 6776543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=69.77 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=58.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~ 127 (393)
.++|+|+|+ |.+|+++++.|.+.|++|+++++... ...+.+.... ..++.++.+|..+++.+.++ + .++|+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~---~~~~~~~~~~--~~~~~~i~gd~~~~~~l~~a~i--~~ad~ 74 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE---DDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGI--DRCRA 74 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH---HHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTT--TTCSE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCh---HHHHHHHHhh--cCCCeEEEcCCCCHHHHHHcCh--hhCCE
Confidence 468999995 99999999999999999999987421 1111222111 24688999999999998887 6 68999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||-+.+
T Consensus 75 vi~~~~ 80 (153)
T 1id1_A 75 ILALSD 80 (153)
T ss_dssp EEECSS
T ss_pred EEEecC
Confidence 997764
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.6e-07 Score=83.30 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=76.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--e-----EEEEeCCCC--CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--R-----VTIVDNLSR--GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
+||+||||+|+||++++..|...|. + +.++++... ........+.+... +-..-+.+ .....+.+
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~--~~~~~~~~----~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL--PLLKDVIA----TDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC--TTEEEEEE----ESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh--cccCCEEE----cCCcHHHh
Confidence 7999999999999999999998875 5 888876321 11122222332210 11111111 12235556
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc--EEEEeec
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK--TLIYSST 175 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~~V~~SS 175 (393)
.++|+||++||...- ........++.|+..++.+++.+.+.+.+ ++|.+|-
T Consensus 78 --~daDvVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 78 --KDLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp --TTCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --CCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 799999999986532 23355678899999999999999998754 5666664
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=84.38 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..|++|+|+|+ |++|+++++.|++. |++|++++|.... .+.+... .++..+.+|+.+.+++.+++ .++
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~k----a~~la~~----~~~~~~~~D~~d~~~l~~~l--~~~ 89 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLAN----AQALAKP----SGSKAISLDVTDDSALDKVL--ADN 89 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHH----HHHHHGG----GTCEEEECCTTCHHHHHHHH--HTS
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHH----HHHHHHh----cCCcEEEEecCCHHHHHHHH--cCC
Confidence 45689999997 99999999999998 7899998874321 1112111 24677889999999999988 689
Q ss_pred cEEEEcccccCccCCccChHHHHHH-------H--HHHHHHHHHHHHhcCC
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHN-------I--TSNTLVILEAMAAHKV 167 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~-------n--~~~~~~ll~~~~~~~~ 167 (393)
|+|||+++..... .-....++. + ...+..+++.|++.|+
T Consensus 90 DvVIn~tp~~~~~---~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 90 DVVISLIPYTFHP---NVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp SEEEECSCGGGHH---HHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred CEEEECCchhhhH---HHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 9999999864211 001111111 1 1235677888888776
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=74.97 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=75.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+.++||.|+|++|++|+.++..|+..| .+|.++++...........+........++.+ .. +..+++ .+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~------d~~~al--~d 76 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TS------DIKEAL--TD 76 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ES------CHHHHH--TT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cC------CHHHHh--CC
Confidence 456899999999999999999999998 58999887432222222223332111112221 12 234567 79
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE--EEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT--LIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~--~V~~S 174 (393)
+|+||.+||...- ........+..|+...+.+++.+.+.+.+- ++.+|
T Consensus 77 ADvVvitaG~p~k--pG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 77 AKYIVSSGGAPRK--EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp EEEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred CCEEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 9999999986422 233456678999999999999998876443 44444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=69.33 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=57.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~V 128 (393)
|+|+|+|+ |.+|+++++.|.+.|++|+++++... ..+.+.+. .++.++.+|.++.+.+.++ + .++|+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~----~~~~l~~~----~~~~~i~gd~~~~~~l~~a~i--~~ad~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRE----LCEEFAKK----LKATIIHGDGSHKEILRDAEV--SKNDVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHHH----SSSEEEESCTTSHHHHHHHTC--CTTCEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHHH----cCCeEEEcCCCCHHHHHhcCc--ccCCEE
Confidence 58999995 99999999999999999999987432 12222111 3678999999999998887 4 689999
Q ss_pred EEccc
Q 016208 129 MHFAA 133 (393)
Q Consensus 129 i~~A~ 133 (393)
|-+.+
T Consensus 70 i~~~~ 74 (218)
T 3l4b_C 70 VILTP 74 (218)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 96653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=67.16 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=57.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH--HhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI--FAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~~~ 123 (393)
...++|+|+| .|.+|..+++.|.+. |++|+++++... ..+.+.. .++..+.+|..+.+.+.++ + .
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~----~~~~~~~-----~g~~~~~gd~~~~~~l~~~~~~--~ 104 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREE----AAQQHRS-----EGRNVISGDATDPDFWERILDT--G 104 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHH----HHHHHHH-----TTCCEEECCTTCHHHHHTBCSC--C
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHH----HHHHHHH-----CCCCEEEcCCCCHHHHHhccCC--C
Confidence 3457899999 699999999999999 999999987432 1222222 3677889999999887765 5 6
Q ss_pred CCcEEEEccc
Q 016208 124 AFDAVMHFAA 133 (393)
Q Consensus 124 ~~d~Vi~~A~ 133 (393)
++|+||.+.+
T Consensus 105 ~ad~vi~~~~ 114 (183)
T 3c85_A 105 HVKLVLLAMP 114 (183)
T ss_dssp CCCEEEECCS
T ss_pred CCCEEEEeCC
Confidence 8999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=63.49 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=57.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
++|+|+|+ |.+|+.+++.|.+.|++|+++++... ..+.+.+ .++.++.+|..+++.+.++-- .++|+||
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~----~~~~~~~-----~g~~~i~gd~~~~~~l~~a~i-~~ad~vi 76 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRT----RVDELRE-----RGVRAVLGNAANEEIMQLAHL-ECAKWLI 76 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHH-----TTCEEEESCTTSHHHHHHTTG-GGCSEEE
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHH-----cCCCEEECCCCCHHHHHhcCc-ccCCEEE
Confidence 68999995 99999999999999999999987432 2222222 478899999999998877521 5789998
Q ss_pred Eccc
Q 016208 130 HFAA 133 (393)
Q Consensus 130 ~~A~ 133 (393)
-+.+
T Consensus 77 ~~~~ 80 (140)
T 3fwz_A 77 LTIP 80 (140)
T ss_dssp ECCS
T ss_pred EECC
Confidence 7654
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5e-06 Score=74.77 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r 81 (393)
+.+|||.|+|++|.+|+.+++.+.+ .|++++++..
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d 38 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE 38 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3458999999999999999999875 5788875543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-05 Score=68.91 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=76.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+|||.|+|+ |.+|..++..|+..|. +|.++++...........+...... ..++.....|. +.+ .+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~-------~a~--~~ 73 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY-------EDC--KD 73 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG-------GGG--TT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH-------HHh--CC
Confidence 4579999995 9999999999999986 8999887432222212223322111 12445444442 345 78
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+|+||.+||...- ........+..|+...+.+++.+.+...+ .++.+|
T Consensus 74 aDvVvi~ag~p~k--pG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 74 ADIVCICAGANQK--PGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp CSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCEEEEecccCCC--CCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 9999999986422 23345667899999999999999887544 444444
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.8e-05 Score=70.77 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=61.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-----C-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-----Y-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
|.||||+|.||||++|+.|++.|++++ + +++.+.+..............+... ..+.+. |+ +.+ .+
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~-~~~~~~--~~-~~~----~~ 78 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL-AHRVVE--PT-EAA----VL 78 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG-TTCBCE--EC-CHH----HH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc-ceeeec--cC-CHH----Hh
Confidence 456899999999999999999999987 4 7777753221111111111111000 122222 22 222 24
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT 178 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v 178 (393)
.++|+||.+.+... +..+++.+ +.|+ ++|-+|+..-
T Consensus 79 --~~~DvVf~alg~~~------------------s~~~~~~~-~~G~-~vIDlSa~~R 114 (352)
T 2nqt_A 79 --GGHDAVFLALPHGH------------------SAVLAQQL-SPET-LIIDCGADFR 114 (352)
T ss_dssp --TTCSEEEECCTTSC------------------CHHHHHHS-CTTS-EEEECSSTTT
T ss_pred --cCCCEEEECCCCcc------------------hHHHHHHH-hCCC-EEEEECCCcc
Confidence 48999999887532 23566777 7776 7888988653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00017 Score=66.34 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|||.|+|+ |.+|..++..|+..|. +|.+++............+.+.......+.+..+ + .+++ .++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~---~----~~a~--~~a 75 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---D----YSDV--KDC 75 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGG--TTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEEC---C----HHHh--CCC
Confidence 3479999997 9999999999999987 9999988644433333333322111122322221 2 2346 799
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+||.+++...- ........+..|+.....+++.+.+.+..-+|.+.|
T Consensus 76 DvVii~~g~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 76 DVIVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CEEEEcCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999986422 122345677889999999999998765443444444
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.6e-05 Score=70.08 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
.+.++||.|+|+ |.+|+.++..|+..|. ++.++++...........+.+.......+....+|. +.+ .
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~-------~a~--~ 75 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEY-------SDA--K 75 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCG-------GGG--T
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcH-------HHh--c
Confidence 355689999996 9999999999999886 899988743222222222322211112444444442 345 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
++|+||.+||...- ........++.|+.-.+.+.+.+.+...+ .++.+|
T Consensus 76 ~aDiVvi~ag~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 76 DADLVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp TCSEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCEEEECCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 99999999986422 12334567888999999999999887543 344444
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.71 E-value=6e-05 Score=70.48 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.|.++||.|.||+|.+|+.+++.|.++.. +++++.+..............+. ..+ ..|+.-.+ .+.+ .+
T Consensus 13 ~M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~---~~v---~~dl~~~~--~~~~--~~ 82 (359)
T 1xyg_A 13 PEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLR---AQK---LPTLVSVK--DADF--ST 82 (359)
T ss_dssp --CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGT---TSC---CCCCBCGG--GCCG--GG
T ss_pred cccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhc---Ccc---cccceecc--hhHh--cC
Confidence 34557999999999999999999998864 88887653222111111111111 110 02332211 2233 47
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
+|+||.+++... +...+..+ +.|+ ++|-.|+..
T Consensus 83 vDvVf~atp~~~------------------s~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 83 VDAVFCCLPHGT------------------TQEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp CSEEEECCCTTT------------------HHHHHHTS-CTTC-EEEECSSTT
T ss_pred CCEEEEcCCchh------------------HHHHHHHH-hCCC-EEEECCccc
Confidence 999999886431 23455666 6777 688888843
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=3.5e-05 Score=65.73 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=50.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH---HHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK---AVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~~~~~ 125 (393)
+++|+|+||+|.+|..+++.+...|.+|++++|... ..+.+.++ +... ..|..+.+ .+.+.....++
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~~~~-----g~~~-~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KREMLSRL-----GVEY-VGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHTT-----CCSE-EEETTCSTHHHHHHHHTTTCCE
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc-----CCCE-EeeCCcHHHHHHHHHHhCCCCC
Confidence 479999999999999999999999999999887422 12222222 2222 23555443 33333322469
Q ss_pred cEEEEccc
Q 016208 126 DAVMHFAA 133 (393)
Q Consensus 126 d~Vi~~A~ 133 (393)
|+||+++|
T Consensus 109 D~vi~~~g 116 (198)
T 1pqw_A 109 DVVLNSLA 116 (198)
T ss_dssp EEEEECCC
T ss_pred eEEEECCc
Confidence 99999986
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00034 Score=61.92 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=67.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC-------------------CCCchhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNMGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
++|+|+| .|.+|+++++.|...|. +++++++.. .+.....+.+..+.+. ..+..+..+
T Consensus 32 ~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~v~~~~~~ 109 (249)
T 1jw9_B 32 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH-IAITPVNAL 109 (249)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT-SEEEEECSC
T ss_pred CeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC-cEEEEEecc
Confidence 7999999 59999999999999996 888888754 1122222333333211 234555666
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
+. .+.+.+.+ .++|+||.+... ...-..+.+.|.+.+++ +|+.+...
T Consensus 110 ~~-~~~~~~~~--~~~DvVi~~~d~-----------------~~~~~~l~~~~~~~~~p-~i~~~~~g 156 (249)
T 1jw9_B 110 LD-DAELAALI--AEHDLVLDCTDN-----------------VAVRNQLNAGCFAAKVP-LVSGAAIR 156 (249)
T ss_dssp CC-HHHHHHHH--HTSSEEEECCSS-----------------HHHHHHHHHHHHHHTCC-EEEEEEEB
T ss_pred CC-HhHHHHHH--hCCCEEEEeCCC-----------------HHHHHHHHHHHHHcCCC-EEEeeecc
Confidence 64 45566777 689999988632 11223566777777764 67665443
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=64.02 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=55.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~V 128 (393)
++|+|+|+ |.+|+.+++.|.+.|+ |+++++... ..+ .+. .++.++.+|.++++.+.++ + .++|.|
T Consensus 10 ~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~----~~~---~~~---~~~~~i~gd~~~~~~l~~a~i--~~ad~v 75 (234)
T 2aef_A 10 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENV----RKK---VLR---SGANFVHGDPTRVSDLEKANV--RGARAV 75 (234)
T ss_dssp CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG----HHH---HHH---TTCEEEESCTTCHHHHHHTTC--TTCSEE
T ss_pred CEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH----HHH---HHh---cCCeEEEcCCCCHHHHHhcCc--chhcEE
Confidence 68999996 9999999999999999 998866321 111 111 3688999999999998877 5 689999
Q ss_pred EEccc
Q 016208 129 MHFAA 133 (393)
Q Consensus 129 i~~A~ 133 (393)
|-+.+
T Consensus 76 i~~~~ 80 (234)
T 2aef_A 76 IVDLE 80 (234)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 97653
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=65.98 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=60.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.|+||.|.||||++|+.+++.|.+++. +++++.+..............+... ..+ .+.+.+ + + .++|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~-~~~-----~~~~~~---~-~--~~vD 70 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGR-TNL-----KFVPPE---K-L--EPAD 70 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTT-CCC-----BCBCGG---G-C--CCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCc-ccc-----cccchh---H-h--cCCC
Confidence 468999999999999999999998764 8887765322211111111111100 011 122222 2 4 5899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
+||.+++... ...+++.+.+.|+ ++|-+|+..
T Consensus 71 vV~~a~g~~~------------------s~~~a~~~~~aG~-~VId~Sa~~ 102 (345)
T 2ozp_A 71 ILVLALPHGV------------------FAREFDRYSALAP-VLVDLSADF 102 (345)
T ss_dssp EEEECCCTTH------------------HHHTHHHHHTTCS-EEEECSSTT
T ss_pred EEEEcCCcHH------------------HHHHHHHHHHCCC-EEEEcCccc
Confidence 9999986431 3455666667787 688888853
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2e-05 Score=68.07 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=31.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|+|+||+|.+|+++++.|.+.|++|++++|..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5899999999999999999999999999998743
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0002 Score=65.53 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|+ |.+|++++..|.+.|. +|++++|.........+...++... .++.+...++.+.+++.+.+ .++|
T Consensus 153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~-~~~~~~~~~~~~~~~l~~~l--~~aD 228 (315)
T 3tnl_A 153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK-TDCKAQLFDIEDHEQLRKEI--AESV 228 (315)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHH--HTCS
T ss_pred cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh-cCCceEEeccchHHHHHhhh--cCCC
Confidence 4589999996 8999999999999998 8999988632222222222222110 23444556777778888887 6899
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+||++....
T Consensus 229 iIINaTp~G 237 (315)
T 3tnl_A 229 IFTNATGVG 237 (315)
T ss_dssp EEEECSSTT
T ss_pred EEEECccCC
Confidence 999998654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00053 Score=62.98 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=76.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEE-EccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFI-YADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~-~~Dl~~~~~~~~~~~~~ 123 (393)
|.+|||.|+| +|.+|..++..|+..|. +|.++++...........+.+... ......+. ..| .+++ .
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-------~~a~--~ 72 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-------YKDL--E 72 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-------GGGG--T
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-------HHHH--C
Confidence 4468999999 59999999999999988 999988754332222222322110 00123332 233 1356 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
++|+||.+|+...- ........+..|+...+.+++.+.+.... .+|.+|
T Consensus 73 ~aDvVIi~ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 73 NSDVVIVTAGVPRK--PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp TCSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEcCCcCCC--CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 89999999986432 22345667889999999999999887643 455554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00025 Score=67.64 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=58.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~ 127 (393)
.++|+|+|. |-+|+.+++.|.+.|++|+++++... ..+.+.. .++.++.||.++++.+.++ + .++|+
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~----~v~~~~~-----~g~~vi~GDat~~~~L~~agi--~~A~~ 71 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPD----HIETLRK-----FGMKVFYGDATRMDLLESAGA--AKAEV 71 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHH----HHHHHHH-----TTCCCEESCTTCHHHHHHTTT--TTCSE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHh-----CCCeEEEcCCCCHHHHHhcCC--CccCE
Confidence 468999995 99999999999999999999987432 2222222 4788899999999998887 4 68999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||-+..
T Consensus 72 viv~~~ 77 (413)
T 3l9w_A 72 LINAID 77 (413)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 987653
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00087 Score=62.00 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=97.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-------eEEEEeCCCCCC--chhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGN--MGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
+..-||.|+||+|.||++|+-.|..... ++..++...... ....-.+...... .....+.++ + ..
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~-~~~~~~~~~--~---~~ 95 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFP-LLDKVVVTA--D---PR 95 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCT-TEEEEEEES--C---HH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCcc-CCCcEEEcC--C---hH
Confidence 4446999999999999999998887532 677776522111 1112223332111 122222222 2 24
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEeecce---eecCCCCCCCCCC-C
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSSTCA---TYGEPDKMPITES-T 191 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~SS~~---vyg~~~~~~~~E~-~ 191 (393)
+++ .++|+||-+||...- ......+.++.|+.-.+.+.+.+.+.. .. +++.+|-.. +|-. .... .
T Consensus 96 ~a~--~~advVvi~aG~prk--pGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~-----~~~~~g 166 (345)
T 4h7p_A 96 VAF--DGVAIAIMCGAFPRK--AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL-----LKSAQG 166 (345)
T ss_dssp HHT--TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHHTTT
T ss_pred HHh--CCCCEEEECCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH-----HHHccC
Confidence 556 799999999997532 244567789999999999999987753 22 455555310 1100 0000 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 233 (393)
.+.+...-+.+.+-.-++-...+++.+++..-++-..|.|..
T Consensus 167 ~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H 208 (345)
T 4h7p_A 167 KLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH 208 (345)
T ss_dssp CSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS
T ss_pred CCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC
Confidence 122333334444444455555555677776667655566764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0013 Score=60.16 Aligned_cols=114 Identities=19% Similarity=0.168 Sum_probs=74.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-C--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-S--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|||.|+||+|.+|+.++..|... + .++..+++.. ........+... .....+....-.+ ..+.+ .++|
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~---~~~~~v~~~~~~~---~~~~~--~~aD 71 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI---PTAVKIKGFSGED---ATPAL--EGAD 71 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS---CSSEEEEEECSSC---CHHHH--TTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC---CCCceEEEecCCC---cHHHh--CCCC
Confidence 68999999999999999999875 4 5889888754 222222222221 1222222110011 13456 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+||.+||...- ........++.|+.-.+.+.+.+.+...+ .++.+|
T Consensus 72 ivii~ag~~rk--pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp EEEECCSCSCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 99999986432 23456778999999999999999887533 455554
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0012 Score=61.08 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=71.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhh---cCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQEL---FPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+|||.|+|| |.+|..++..|...|+ +|.++++...........+... .....++.. ..| . .+++ .+
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d---~---~ea~--~~ 78 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYS---Y---EAAL--TG 78 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECS---H---HHHH--TT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCC---H---HHHh--CC
Confidence 479999997 9999999999999998 9998887543222211112111 111112221 123 2 3456 79
Q ss_pred CcEEEEcccccCccCCcc---ChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 125 FDAVMHFAAVAYVGESTL---EPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~---~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+|+||-+++...-..... ........|+...+.+.+.+.+...+-+|...|
T Consensus 79 aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 79 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999999997542211100 334557778888888888888775333443334
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00046 Score=63.15 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=69.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEE-ccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIY-ADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~d 126 (393)
|||.|+|| |.+|..++..|+..|+ +|.++++...........+.+.. ......++.. .|. +.+ .++|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-------~a~--~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-------ADT--ANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-------GGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-------HHH--CCCC
Confidence 69999998 9999999999999997 88888764322222111222110 0011222222 342 335 7899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+||.+++..... ..........|+.....+.+.+.+.....+|.+.|
T Consensus 73 ~Vi~a~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 73 VIVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 999999864321 11223456788888889999988876555555555
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00067 Score=62.31 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=73.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEEccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
+.+|||.|+|+ |.+|..++..|+..| .+|.++++...........+...... ...+.+.. | + .+++ .
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~--~ 73 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDC--H 73 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGG--T
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHh--C
Confidence 34579999998 999999999999888 48999876432111111222221110 12333332 2 2 3446 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
++|+||.+++..... .......+..|+.....+.+.+.+.+..-+|.+.|
T Consensus 74 ~aDvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 74 DADLVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp TCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999999864321 23445677888988999999888875443444344
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=68.57 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=56.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
...++|+|+|+ |.+|..+++.|...|.+|++++|.... .+.+.+.. +.. +.+|..+.+++.+++ .++|
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~----~~~~~~~~----g~~-~~~~~~~~~~l~~~~--~~~D 231 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKR----LQYLDDVF----GGR-VITLTATEANIKKSV--QHAD 231 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHT----TTS-EEEEECCHHHHHHHH--HHCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHHhc----Cce-EEEecCCHHHHHHHH--hCCC
Confidence 44589999998 999999999999999999999874321 11222211 111 456777888888888 5799
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+||++++..
T Consensus 232 vVi~~~g~~ 240 (369)
T 2eez_A 232 LLIGAVLVP 240 (369)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999999854
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00055 Score=62.87 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=73.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEE-EccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFI-YADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~-~~Dl~~~~~~~~~~~~~ 123 (393)
|.++||.|+|+ |.+|..++..|+..|+ +|.++++...........+..... ......+. ..|. +++ .
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-------~a~--~ 74 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-------AAI--E 74 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-------GGG--T
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-------HHH--C
Confidence 55689999997 9999999999999998 999998754332222222222110 00122222 2332 345 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
++|+||.+||...-+ .......+..|+.-.+.+++.+.+.+.. .+|.+|
T Consensus 75 ~aDiVIiaag~p~k~--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 75 GADVVIVTAGVPRKP--GMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp TCSEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEccCcCCCC--CCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 999999999864221 2234456788999999999999887543 455544
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00072 Score=62.35 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCC--CC-chhhhhhhhhcCCCCccEEEEc-cCCCHHHHHHHHhh
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSR--GN-MGAVKVLQELFPQPGQLQFIYA-DLGDAKAVNKIFAE 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~--~~-~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~ 122 (393)
.|+||.|+||||++|+.|++.|.++ ++++..+..... .. ....+..+.+... ....+... | .+ +++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~~~---~~---~~~-- 73 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPMSD---IS---EFS-- 73 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEESS---GG---GTC--
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCc-cceeEeccCC---HH---HHh--
Confidence 4689999999999999999999985 568877754331 11 1111111212110 12333322 2 21 222
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
.++|+||.+.+.. .+..+++.+.+.|+ ++|=.|+..
T Consensus 74 ~~~Dvvf~a~p~~------------------~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 74 PGVDVVFLATAHE------------------VSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp TTCSEEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred cCCCEEEECCChH------------------HHHHHHHHHHHCCC-EEEEcCCcc
Confidence 5799999887532 23455666667787 688888864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00058 Score=62.88 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=76.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEE-EccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~ 123 (393)
..+++|.|+|+ |.+|..++..|+..|. +|..+++...........+............+ ..| + +.+ .
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d---~----~~~--~ 86 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKD---Y----SVT--A 86 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSS---G----GGG--T
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCC---H----HHh--C
Confidence 45689999997 9999999999999987 89998874322222222233221111122233 233 2 235 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
++|+||.+||...- ........++.|+.-.+.+.+.+.+.... .++.+|
T Consensus 87 ~aDiVvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 87 NSKLVIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp TEEEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999997532 23455678899999999999999887543 455444
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00042 Score=63.44 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC--CCCchhhhhhhhhcC-CCCccEEEE-ccCCCHHHHHHHHh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS--RGNMGAVKVLQELFP-QPGQLQFIY-ADLGDAKAVNKIFA 121 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~~~~~~~~~~~ 121 (393)
+.+++|.|+|+ |.+|..++..|...|+ +|+++++.. .........+..... ......+.. .| .+.+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-------~~a~- 76 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-------YADT- 76 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-------GGGG-
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-------HHHh-
Confidence 45579999996 9999999999999999 999998742 111111111211100 001122221 23 1345
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
.++|+||.+||.... ........+..|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 77 -~~aDvVIiaag~p~k--pg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 77 -ADSDVVVITAGIARK--PGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp -TTCSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 799999999986432 23445678899999999999999887543 455554
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0004 Score=63.04 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=30.4
Q ss_pred CcE-EEEE-cCC-----------------ChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTH-VLVT-GGA-----------------GYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~-IlIt-Gat-----------------G~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+++ |||| |+| |-.|.+++++++.+|++|+.+.+..
T Consensus 36 gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 36 GRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp TCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence 355 9999 666 9999999999999999999998853
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=61.97 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=57.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|.|+||.|+|++|.+|+.+++.+.+. +.++.++ +|...... -..+.++.....++ .-.+++.+++ .+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~--G~d~gel~g~~~gv-------~v~~dl~~ll--~~ 73 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL--GQDAGAFLGKQTGV-------ALTDDIERVC--AE 73 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT--TSBTTTTTTCCCSC-------BCBCCHHHHH--HH
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc--cccHHHHhCCCCCc-------eecCCHHHHh--cC
Confidence 56799999999999999999999876 6787774 44322111 01111111111111 1122344555 36
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
+|+||+++.. ..+...++.|.++|+ .+|.
T Consensus 74 ~DVVIDfT~p------------------~a~~~~~~~al~~G~-~vVi 102 (272)
T 4f3y_A 74 ADYLIDFTLP------------------EGTLVHLDAALRHDV-KLVI 102 (272)
T ss_dssp CSEEEECSCH------------------HHHHHHHHHHHHHTC-EEEE
T ss_pred CCEEEEcCCH------------------HHHHHHHHHHHHcCC-CEEE
Confidence 8999998631 134567778888887 4554
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00077 Score=61.05 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=74.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEE-ccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIY-ADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~~~~~~~~~~~~~~~ 125 (393)
|||.|+|+ |.+|..++..|...|+ +|.++++...........+..... ......+.- .| .+++ .++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-------~~a~--~~a 70 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-------YSLL--KGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-------GGGG--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-------HHHh--CCC
Confidence 68999998 9999999999999988 999998743222111111222110 112223322 23 3456 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
|+||.+||.... ........+..|+.-.+.+.+.+.+.+.. .+|.+|
T Consensus 71 DiVViaag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 71 EIIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 999999986432 22345677889999999999999888543 444444
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00026 Score=65.91 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=50.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH----HHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK----AVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----~~~~~~~~~~ 124 (393)
+++|||+||+|.+|..+++.+...|.+|++++|+.... +.+.++ +... ..|+.+.+ .+.++... +
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~----~~~~~~-----g~~~-~~d~~~~~~~~~~~~~~~~~-~ 238 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE----ELFRSI-----GGEV-FIDFTKEKDIVGAVLKATDG-G 238 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH----HHHHHT-----TCCE-EEETTTCSCHHHHHHHHHTS-C
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH----HHHHHc-----CCce-EEecCccHhHHHHHHHHhCC-C
Confidence 47999999999999999999999999999998743322 222222 2221 23655322 33333322 7
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||++++.
T Consensus 239 ~D~vi~~~g~ 248 (347)
T 2hcy_A 239 AHGVINVSVS 248 (347)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEECCCc
Confidence 9999999973
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00025 Score=65.69 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=51.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+.+|+|+||+|.+|..+++.+...|.+|+++++... ..+.+.++ +... ..|..+. +.+.+.....++
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~~~~-----g~~~-~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 146 GDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE----KAETARKL-----GCHH-TINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHH-----TCSE-EEETTTSCHHHHHHHHHTTCCE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHc-----CCCE-EEECCCHHHHHHHHHHhCCCCC
Confidence 479999999999999999999999999999987431 22222332 1111 1244433 334444433579
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||+++|.
T Consensus 216 d~vi~~~g~ 224 (333)
T 1wly_A 216 DVVYDSIGK 224 (333)
T ss_dssp EEEEECSCT
T ss_pred eEEEECCcH
Confidence 999999984
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00021 Score=65.95 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=50.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+++|+|+||+|.+|..+++.+...|.+|+++++... ..+.+.++ +... ..|..+. +.+.+.....++
T Consensus 141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSALKA-----GAWQ-VINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHH-----TCSE-EEETTTSCHHHHHHHHTTTCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc-----CCCE-EEECCCccHHHHHHHHhCCCCc
Confidence 479999999999999999999999999999887422 12222232 1111 1344443 334444333479
Q ss_pred cEEEEccc
Q 016208 126 DAVMHFAA 133 (393)
Q Consensus 126 d~Vi~~A~ 133 (393)
|+||+++|
T Consensus 211 D~vi~~~g 218 (327)
T 1qor_A 211 RVVYDSVG 218 (327)
T ss_dssp EEEEECSC
T ss_pred eEEEECCc
Confidence 99999998
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=60.37 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhhC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
..++||.|+|+ |.+|..++..|...|. +|+++++...........+.+... ....+.+...| .+.+ .
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~-------~~al--~ 73 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD-------YDDC--R 73 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC-------GGGT--T
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCc-------HHHh--C
Confidence 34579999998 9999999999988774 899998753211111122222211 11134444322 2335 7
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
++|+||.+++....... .....+..|..-...+++.+.+.....+++
T Consensus 74 ~aDvViia~~~~~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~~i 120 (316)
T 1ldn_A 74 DADLVVICAGANQKPGE--TRLDLVDKNIAIFRSIVESVMASGFQGLFL 120 (316)
T ss_dssp TCSEEEECCSCCCCTTT--CSGGGHHHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCEEEEcCCCCCCCCC--CHHHHHHcChHHHHHHHHHHHHHCCCCEEE
Confidence 99999999987543322 224456778888888888887765333333
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=60.27 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=74.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEE-EccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~ 124 (393)
.++||.|+|+ |.+|..++..|+..|. +|.++++...........+.+........... ..|..+ + .+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-------~--~d 89 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-------S--AG 89 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-------C--SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-------h--CC
Confidence 4589999998 9999999999999986 89998874322222222222221111122332 345422 4 79
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+|+||-+||....+ .....+.+..|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 90 aDiVIitaG~p~kp--G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 90 SKLVVITAGARQQE--GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CSEEEECCSCCCCS--SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 99999999875322 3344567788888899999888877543 344444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=61.07 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=72.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
..+|||.|+|| |.+|..++..|+..+. ++..+++...........+.+.......+.+..++ .+++ .+
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~-------~~a~--~~ 76 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAE-------YSDA--KD 76 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGG--GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECC-------HHHh--CC
Confidence 34479999998 9999999999988875 89998873322222122222211111234443322 3335 78
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+|+||..++..... .......+..|+.....+.+.+.+.+.. .+|.+|
T Consensus 77 aDvVii~ag~~~k~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 77 ADLVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 99999999864321 2334567788889999999888877533 455443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00051 Score=63.51 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC---H-HHHHHHHhhC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD---A-KAVNKIFAEN 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~-~~~~~~~~~~ 123 (393)
.+++|+|+||+|.||..+++.+...|.+|++++++.. ..+.++++ +.. ...|..+ . +.+.+... .
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~~~~-----g~~-~~~d~~~~~~~~~~~~~~~~-~ 213 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYLKQI-----GFD-AAFNYKTVNSLEEALKKASP-D 213 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT-----TCS-EEEETTSCSCHHHHHHHHCT-T
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhc-----CCc-EEEecCCHHHHHHHHHHHhC-C
Confidence 3479999999999999999999999999999887432 12222332 111 1235554 2 22333322 4
Q ss_pred CCcEEEEccc
Q 016208 124 AFDAVMHFAA 133 (393)
Q Consensus 124 ~~d~Vi~~A~ 133 (393)
++|+||+++|
T Consensus 214 ~~d~vi~~~g 223 (333)
T 1v3u_A 214 GYDCYFDNVG 223 (333)
T ss_dssp CEEEEEESSC
T ss_pred CCeEEEECCC
Confidence 7999999997
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00097 Score=60.84 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=64.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|+|+ |.+|..++..|...|+ +|.++++...........+...........+...| . +.+ .++|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~---~----~a~--~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG---H----SEL--ADAQV 70 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC---G----GGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC---H----HHh--CCCCE
Confidence 58999997 9999999999999998 99999874321111111111111001123333222 2 345 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYS 173 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~ 173 (393)
||.+++..... .......+..|+...+.+++.+.+.... .+|.+
T Consensus 71 VIi~~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~ 115 (304)
T 2v6b_A 71 VILTAGANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVT 115 (304)
T ss_dssp EEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEEC
T ss_pred EEEcCCCCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 99999754221 1223345678888888888888776433 34443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=60.02 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=71.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|||.|+|+ |.+|+.++..|+..|. +|.++++...........+.+... ......+...|. .+.+ .++|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~------~~a~--~~aD 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND------YGPT--EDSD 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS------SGGG--TTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC------HHHh--CCCC
Confidence 68999996 9999999999999886 899998755332222222222110 011233331221 2345 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
+||.+||.... ........+..|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 72 vVii~ag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 72 VCIITAGLPRS--PGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred EEEECCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 99999986432 22345667889999999999999887643 444444
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00036 Score=57.10 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCCCCCch---hhhhhhhhcCCCCccEEEEccCCCH--HHHHHHHhh----CCCcEE
Q 016208 58 AGYIGSHAALRLLKDSYRVTIVDNLSRGNMG---AVKVLQELFPQPGQLQFIYADLGDA--KAVNKIFAE----NAFDAV 128 (393)
Q Consensus 58 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~----~~~d~V 128 (393)
+|+++.+.++.|.+.|.+|++..|....... ..+.+... +.....+++|+.++ +++.++++. .+-|++
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~---G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVL 101 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA---GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVL 101 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT---TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEE
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc---CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 3678999999999999999987775433221 12223222 24566778899998 887766543 234999
Q ss_pred EEccccc
Q 016208 129 MHFAAVA 135 (393)
Q Consensus 129 i~~A~~~ 135 (393)
|||||..
T Consensus 102 VnnAgg~ 108 (157)
T 3gxh_A 102 VHCLANY 108 (157)
T ss_dssp EECSBSH
T ss_pred EECCCCC
Confidence 9999863
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=61.02 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=56.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC---eEEEEe-CCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|+|+|.||||.+|+.|++.|.++++ +++++. +...... .. + .+......|. +++ .+ .++
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~--~~----~----~g~~i~~~~~-~~~----~~--~~~ 69 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MG----F----AESSLRVGDV-DSF----DF--SSV 69 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EE----E----TTEEEECEEG-GGC----CG--GGC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc--cc----c----CCcceEEecC-CHH----Hh--cCC
Confidence 6899999999999999999997764 555553 2111110 00 0 1111111122 111 13 479
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
|+||.+.+.. .+..+++.+.+.|+ ++|-+|+..
T Consensus 70 DvV~~a~g~~------------------~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAAE------------------VSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC-EEEETTCTT
T ss_pred CEEEEcCCcH------------------HHHHHHHHHHHCCC-EEEEeCCCC
Confidence 9999987632 24466777778888 578888754
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=59.40 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=68.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
+..+|+|.|+|+ |.+|..++..|...|+ +|++++|...........+...........+... .+. +.+ .
T Consensus 4 ~~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~--~ 74 (319)
T 1lld_A 4 TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EIC--R 74 (319)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGG--T
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHh--C
Confidence 344589999997 9999999999999999 9999987431111000011111000012232222 122 234 6
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
++|+||-+++.... ........+..|+.....+++.+.+.+.+.+|.
T Consensus 75 ~aD~Vii~v~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi 121 (319)
T 1lld_A 75 DADMVVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121 (319)
T ss_dssp TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 89999999875432 123455677788888888888877654333343
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0004 Score=64.88 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=51.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+.+|+|+||+|.||..+++.+...|.+|++++++.. ..+.++++ +.. ...|..+. +.+.+.....++
T Consensus 163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~-----g~~-~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK----KLQMAEKL-----GAA-AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-----TCS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHc-----CCc-EEEecCChHHHHHHHHHhcCCCc
Confidence 479999999999999999999999999999887432 22222332 111 12344433 334444333479
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||+++|.
T Consensus 233 d~vi~~~G~ 241 (354)
T 2j8z_A 233 NLILDCIGG 241 (354)
T ss_dssp EEEEESSCG
T ss_pred eEEEECCCc
Confidence 999999984
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00047 Score=64.32 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=51.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+.+|+|+||+|.+|..+++.+...|.+|++++++.. ..+.++++ +... ..|..+. +.+.+.....++
T Consensus 171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~-----ga~~-~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE----GQKIVLQN-----GAHE-VFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT-----TCSE-EEETTSTTHHHHHHHHHCTTCE
T ss_pred cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh----HHHHHHHc-----CCCE-EEeCCCchHHHHHHHHcCCCCc
Confidence 479999999999999999999999999999887432 12222332 1221 2344443 334444423479
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||+++|.
T Consensus 241 D~vi~~~G~ 249 (351)
T 1yb5_A 241 DIIIEMLAN 249 (351)
T ss_dssp EEEEESCHH
T ss_pred EEEEECCCh
Confidence 999999973
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0008 Score=62.77 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDN 81 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r 81 (393)
|+||.|.||||++|+.+++.|.+++ .+|+++.+
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 3799999999999999999998875 58888864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00034 Score=67.71 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=56.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.|+|+|.|+ |-+|++|++.|.++||+|+++++... ..+.+.+- -++..+.||.++++-+.++=- .++|.+
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~----~~~~~~~~----~~~~~i~Gd~~~~~~L~~Agi-~~ad~~ 72 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD----RLRELQDK----YDLRVVNGHASHPDVLHEAGA-QDADML 72 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH----HHHHHHHH----SSCEEEESCTTCHHHHHHHTT-TTCSEE
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHHh----cCcEEEEEcCCCHHHHHhcCC-CcCCEE
Confidence 489999995 99999999999999999999976322 22222221 368899999999999998743 689988
Q ss_pred EEc
Q 016208 129 MHF 131 (393)
Q Consensus 129 i~~ 131 (393)
|-+
T Consensus 73 ia~ 75 (461)
T 4g65_A 73 VAV 75 (461)
T ss_dssp EEC
T ss_pred EEE
Confidence 743
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00086 Score=62.27 Aligned_cols=77 Identities=23% Similarity=0.175 Sum_probs=51.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~ 127 (393)
+.+|||+||+|.+|..+++.+...|.+|+++++..... +.+.++ +.-.++..+ .+. +.+.+.....++|+
T Consensus 160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~----~~~~~~----ga~~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT----EFVKSV----GADIVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH----HHHHHH----TCSEEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHhc----CCcEEecCc-hhHHHHHHHHhCCCCceE
Confidence 47999999999999999999999999999998743322 223333 112233333 232 33444443347999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||+++|.
T Consensus 231 vid~~g~ 237 (342)
T 4eye_A 231 VVDPIGG 237 (342)
T ss_dssp EEESCC-
T ss_pred EEECCch
Confidence 9999984
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=60.39 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=68.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|+|| |.+|..++..|+..+. ++..+++...........+.+.......+.+..++ .+++ .++|+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~-------~~a~--~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-------YSDC--KDADL 75 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-------GGGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECC-------HHHh--CCCCE
Confidence 79999998 9999999999998875 89998874322222222222221111234443322 3346 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYS 173 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~ 173 (393)
||..++..... .......+..|+.....+.+.+.+.+.. .+|.+
T Consensus 76 Vii~ag~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 120 (318)
T 1ez4_A 76 VVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA 120 (318)
T ss_dssp EEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 99999864322 1223456778888999999998887533 44444
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=58.80 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=75.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEE-ccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIY-ADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~~~~~~~~~~~~~~~ 125 (393)
|||.|+|+ |.||+.++..|+.++ .++..++............+.+... .+....... .|. +.+ .++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-------~~~--~~a 70 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-------SLL--KGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-------GGG--TTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-------HHh--CCC
Confidence 68999995 999999999998876 4899887743222222222332110 111223332 332 235 799
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+||-.||...- ........++.|..-.+.+.+.+.+.+.+-+|.+=|
T Consensus 71 DvVvitAG~prk--pGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs 118 (294)
T 2x0j_A 71 EIIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCC--SSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEEecCCCCC--CCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 999999997543 345677889999999999999999886544444333
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0019 Score=59.69 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=58.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC---CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS---YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.|+||.|.||||++|+.|++.|.+++ .+++++.... ....... + ....+.+...| ++ .+ .+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~-~~G~~~~----~--~~~~i~~~~~~---~~----~~--~~ 65 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASER-SEGKTYR----F--NGKTVRVQNVE---EF----DW--SQ 65 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTT-TTTCEEE----E--TTEEEEEEEGG---GC----CG--GG
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCC-CCCCcee----e--cCceeEEecCC---hH----Hh--cC
Confidence 46899999999999999999999883 4677765311 1110000 0 01123332222 11 23 47
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
+|+||.+.+.. .+...++.+.+.|+ ++|-.|+..
T Consensus 66 vDvVf~a~g~~------------------~s~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 66 VHIALFSAGGE------------------LSAKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp CSEEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCEEEECCCch------------------HHHHHHHHHHHcCC-EEEEcCCcc
Confidence 99999887642 23456666777787 688888864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00082 Score=62.20 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhh-hhhcCCCCccEEEEccCCCH---HHHHHHHhhC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVL-QELFPQPGQLQFIYADLGDA---KAVNKIFAEN 123 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~ 123 (393)
.+++|||+||+|.||..+++.+...|.+|++++++.. ..+.+ +++ +... ..|..+. +.+.+.. ..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~~-----g~~~-~~~~~~~~~~~~~~~~~-~~ 217 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE----KCRFLVEEL-----GFDG-AIDYKNEDLAAGLKREC-PK 217 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTT-----CCSE-EEETTTSCHHHHHHHHC-TT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHc-----CCCE-EEECCCHHHHHHHHHhc-CC
Confidence 3479999999999999999999999999999887432 22222 222 2221 1233332 2333333 24
Q ss_pred CCcEEEEcccc
Q 016208 124 AFDAVMHFAAV 134 (393)
Q Consensus 124 ~~d~Vi~~A~~ 134 (393)
++|+||+++|.
T Consensus 218 ~~d~vi~~~g~ 228 (336)
T 4b7c_A 218 GIDVFFDNVGG 228 (336)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 79999999973
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0029 Score=56.97 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC------------------CCCchhhhhhhhhcCCCCccEEEEc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS------------------RGNMGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
...+|+|+| .|.+|+++++.|...|. ++++++... ++.....+.+.++.+. -.++.+..
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~-v~v~~~~~ 112 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPD-VLFEVHNY 112 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTT-SEEEEECC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCC-cEEEEecc
Confidence 447999999 59999999999999985 777776543 1222333444444322 35666777
Q ss_pred cCCCHHHHHHHHhh---------CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 109 DLGDAKAVNKIFAE---------NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 109 Dl~~~~~~~~~~~~---------~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
++.+.+.+.++++. .++|+||++... +..-..+-++|.+.+++ +|+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn-----------------~~~R~~in~~c~~~~~P-li~~gv 170 (292)
T 3h8v_A 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDN-----------------FEARMTINTACNELGQT-WMESGV 170 (292)
T ss_dssp CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS-----------------HHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred cCCcHHHHHHHhhhhcccccccCCCCCEEEECCcc-----------------hhhhhHHHHHHHHhCCC-EEEeee
Confidence 78776666665531 479999987531 22334566788888874 666543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0023 Score=58.49 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=72.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|+|+ |.+|..++..|+..+ .++..+++...........+.+.......+.+..+ + .+++ .++|+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~---~----~~a~--~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG---S----YGDL--EGARA 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEEC---C----GGGG--TTEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEEC---C----HHHh--CCCCE
Confidence 68999997 999999999999887 68999887432222212222221100123344332 2 2336 79999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
||..++..... .......+..|+.....+.+.+.+.+.. .+|.+|
T Consensus 71 Vii~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 71 VVLAAGVAQRP--GETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEECCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 99999865322 2344567788899999999988877533 444443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00044 Score=59.76 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|.|+| +|.+|+.+++.|.+.|++|++++|.... .+.+.+ .++... ++.+++ .++|+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~----~~~~~~-----~g~~~~--------~~~~~~--~~~Dv 86 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKR----TARLFP-----SAAQVT--------FQEEAV--SSPEV 86 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHH----HHHHSB-----TTSEEE--------EHHHHT--TSCSE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH-----cCCcee--------cHHHHH--hCCCE
Confidence 568999999 8999999999999999999998874321 111111 133332 234556 68999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||.+..
T Consensus 87 Vi~av~ 92 (215)
T 2vns_A 87 IFVAVF 92 (215)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00098 Score=61.82 Aligned_cols=77 Identities=18% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC---HHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD---AKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~ 124 (393)
.+.+|+|+||+|.+|..+++.+...|.+|++++++..... .+.++. .. ..+ |..+ .+.+.+.....+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~----~~~~lg---a~-~~~--~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE----ELLRLG---AA-YVI--DTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH----HHHHHT---CS-EEE--ETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHhCC---Cc-EEE--eCCcccHHHHHHHHhCCCC
Confidence 3479999999999999999999999999999987544322 222321 11 222 3322 234444443358
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||+++|.
T Consensus 214 ~Dvvid~~g~ 223 (340)
T 3gms_A 214 ADAAIDSIGG 223 (340)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999974
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0049 Score=56.01 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=70.2
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
....|+||.|+|| |.+|..++..|+..|. +|..+++... .......+..+.. .++.. ..|+ +.+
T Consensus 10 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~--~~i~~-t~d~-------~~l-- 75 (303)
T 2i6t_A 10 ENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNL--PNVEI-SKDL-------SAS-- 75 (303)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTC--TTEEE-ESCG-------GGG--
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcC--CCeEE-eCCH-------HHH--
Confidence 3455689999995 9999999999999998 9999988543 2222222222211 23433 2342 335
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
.++|+||-.++... ...........|+.-...+++.+.+.... .+|.+|
T Consensus 76 ~~aD~Vi~aag~~~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 76 AHSKVVIFTVNSLG---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp TTCSEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CCCCEEEEcCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 79999999998742 22345567778888888888888876433 344444
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00054 Score=64.06 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=49.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhh-hcCCCCccEEEEccCCCH---HHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQE-LFPQPGQLQFIYADLGDA---KAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~ 124 (393)
++|+|+||+|.||..+++.+...|. +|+++++... ..+.+.+ + +.. ...|..+. +.+.+... .+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~----~~~~~~~~~-----g~~-~~~d~~~~~~~~~~~~~~~-~~ 230 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE----KCILLTSEL-----GFD-AAINYKKDNVAEQLRESCP-AG 230 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTS-----CCS-EEEETTTSCHHHHHHHHCT-TC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH----HHHHHHHHc-----CCc-eEEecCchHHHHHHHHhcC-CC
Confidence 6999999999999999999999999 9999887421 1222222 2 111 12354442 23333332 27
Q ss_pred CcEEEEccc
Q 016208 125 FDAVMHFAA 133 (393)
Q Consensus 125 ~d~Vi~~A~ 133 (393)
+|+||+++|
T Consensus 231 ~d~vi~~~G 239 (357)
T 2zb4_A 231 VDVYFDNVG 239 (357)
T ss_dssp EEEEEESCC
T ss_pred CCEEEECCC
Confidence 999999997
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00064 Score=62.92 Aligned_cols=79 Identities=20% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc-cCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA-DLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~d 126 (393)
.+.+|||+||+|.+|...++.+...|.+|++++++.. ..+.++++ +.-..+.. +-...+.+.+.....++|
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~----ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE----KLKIAKEY----GAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT----TCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHc----CCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 3479999999999999999999999999999887432 22233332 11122222 212234444544345799
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||+++|.
T Consensus 220 ~vid~~g~ 227 (334)
T 3qwb_A 220 ASFDSVGK 227 (334)
T ss_dssp EEEECCGG
T ss_pred EEEECCCh
Confidence 99999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00062 Score=62.74 Aligned_cols=79 Identities=16% Similarity=0.024 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc-cCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA-DLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~d 126 (393)
.+.+|||+||+|.+|...++.+...|.+|++++++.. ..+.+.++ +--..+.. +-.-.+.+.+.....++|
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~----Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE----KAAHAKAL----GAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHH----TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHc----CCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 3479999999999999999999999999999887432 22233333 11122222 211223444544335799
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||+++|.
T Consensus 212 vvid~~g~ 219 (325)
T 3jyn_A 212 VVYDGVGQ 219 (325)
T ss_dssp EEEESSCG
T ss_pred EEEECCCh
Confidence 99999984
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0014 Score=59.87 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|+ |.+|++++..|.+.|. +|+++.|.........+...++... .+..+...+..+.+.+.+.+ .++|
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~-~~~~v~~~~~~~l~~~~~~l--~~~D 222 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN-TDCVVTVTDLADQHAFTEAL--ASAD 222 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHH--HHCS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhc-cCcceEEechHhhhhhHhhc--cCce
Confidence 4479999996 9999999999999997 8999988632222222222221110 12334445666655555666 5789
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+....
T Consensus 223 iIINaTp~G 231 (312)
T 3t4e_A 223 ILTNGTKVG 231 (312)
T ss_dssp EEEECSSTT
T ss_pred EEEECCcCC
Confidence 999997654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0033 Score=57.71 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=68.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|+|.|+|+ |.+|..++..|+..|+ +|+++++...........+...........+... +. +.+ .++|+
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~---d~----~~~--~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG---DY----ADL--KGSDV 70 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEEC---CG----GGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeC---CH----HHh--CCCCE
Confidence 58999997 9999999999999999 9999987532222211111111000012222222 22 235 68999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYS 173 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~ 173 (393)
||-+++..... ..........|+.....+++.+.+.... .+|.+
T Consensus 71 Viiav~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~ 115 (319)
T 1a5z_A 71 VIVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV 115 (319)
T ss_dssp EEECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred EEEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Confidence 99998754321 2234556777888888888888765433 34444
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0035 Score=55.39 Aligned_cols=108 Identities=25% Similarity=0.260 Sum_probs=65.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC-------C------------CCchhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------R------------GNMGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~------------~~~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|+|+ |.+|+++++.|...|. +++++++.. + +.....+.+.++.+ .-.++.+..+
T Consensus 29 ~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~~~v~~~~~~ 106 (251)
T 1zud_1 29 SQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNP-DIQLTALQQR 106 (251)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred CcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCC-CCEEEEEecc
Confidence 69999996 7799999999999996 677775432 1 11112222333211 1234444444
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+ +.+.+.+++ .++|+||++... ...-..+-+.|.+.+++ +|+.+..+.+|
T Consensus 107 ~-~~~~~~~~~--~~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~~p-~i~~~~~g~~G 156 (251)
T 1zud_1 107 L-TGEALKDAV--ARADVVLDCTDN-----------------MATRQEINAACVALNTP-LITASAVGFGG 156 (251)
T ss_dssp C-CHHHHHHHH--HHCSEEEECCSS-----------------HHHHHHHHHHHHHTTCC-EEEEEEEBTEE
T ss_pred C-CHHHHHHHH--hcCCEEEECCCC-----------------HHHHHHHHHHHHHhCCC-EEEEeccccce
Confidence 4 345667777 579999988531 11223566777777764 77766544443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00053 Score=61.51 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+++++|+|+ |.+|++++..|.+.|.+|++++|.........+.+... ..+ ...|+ +++. + .++|+
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~----~~~--~~~~~---~~~~---~-~~~Di 183 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT----GSI--QALSM---DELE---G-HEFDL 183 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG----SSE--EECCS---GGGT---T-CCCSE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc----CCe--eEecH---HHhc---c-CCCCE
Confidence 3479999997 78999999999999999999877432222222222110 112 12332 2211 1 47999
Q ss_pred EEEcccccC
Q 016208 128 VMHFAAVAY 136 (393)
Q Consensus 128 Vi~~A~~~~ 136 (393)
||++++...
T Consensus 184 vVn~t~~~~ 192 (271)
T 1nyt_A 184 IINATSSGI 192 (271)
T ss_dssp EEECCSCGG
T ss_pred EEECCCCCC
Confidence 999998653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00097 Score=61.94 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=49.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhh-hhcCCCCccEEEEccCCCH----HHHHHHHhhC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQ-ELFPQPGQLQFIYADLGDA----KAVNKIFAEN 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~----~~~~~~~~~~ 123 (393)
+++|||+||+|.+|..+++.+...|.+|++++++.. ..+.+. ++ +... ..|..+. +.+.+.. ..
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~~~-----g~~~-~~d~~~~~~~~~~~~~~~-~~ 224 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE----KVDLLKTKF-----GFDD-AFNYKEESDLTAALKRCF-PN 224 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTS-----CCSE-EEETTSCSCSHHHHHHHC-TT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHc-----CCce-EEecCCHHHHHHHHHHHh-CC
Confidence 479999999999999999999999999999887432 222222 22 1221 1244432 3343332 24
Q ss_pred CCcEEEEccc
Q 016208 124 AFDAVMHFAA 133 (393)
Q Consensus 124 ~~d~Vi~~A~ 133 (393)
++|+||+++|
T Consensus 225 ~~d~vi~~~g 234 (345)
T 2j3h_A 225 GIDIYFENVG 234 (345)
T ss_dssp CEEEEEESSC
T ss_pred CCcEEEECCC
Confidence 7999999987
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0017 Score=60.54 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=51.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC-HHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD-AKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~ 127 (393)
+.+|+|+||+|.+|..+++.+...|.+|++++++... .+.+.++ +--..+..+-.+ .+.+.+.. ..++|+
T Consensus 168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~l----Ga~~~~~~~~~~~~~~~~~~~-~~g~Dv 238 (353)
T 4dup_A 168 GESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGK----CEACERL----GAKRGINYRSEDFAAVIKAET-GQGVDI 238 (353)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHH----TCSEEEETTTSCHHHHHHHHH-SSCEEE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHhc----CCCEEEeCCchHHHHHHHHHh-CCCceE
Confidence 4799999999999999999999999999999874322 2223333 111222222122 23344444 468999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||+++|.
T Consensus 239 vid~~g~ 245 (353)
T 4dup_A 239 ILDMIGA 245 (353)
T ss_dssp EEESCCG
T ss_pred EEECCCH
Confidence 9999984
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0016 Score=60.32 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=55.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-HhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-FAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~ 127 (393)
.++|+|+|+ |.+|+.+++.|.++|+ |+++++... ..+ +.+ .++.++.||..+++.+.++ + .++|.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~----~~~-~~~-----~~~~~i~gd~~~~~~L~~a~i--~~a~~ 180 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV----RKK-VLR-----SGANFVHGDPTRVSDLEKANV--RGARA 180 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGG----HHH-HHH-----TTCEEEESCTTSHHHHHHTCS--TTEEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChh----hhh-HHh-----CCcEEEEeCCCCHHHHHhcCh--hhccE
Confidence 368999995 9999999999999999 998865322 222 222 4789999999999999887 5 68899
Q ss_pred EEEcc
Q 016208 128 VMHFA 132 (393)
Q Consensus 128 Vi~~A 132 (393)
||-+.
T Consensus 181 vi~~~ 185 (336)
T 1lnq_A 181 VIVDL 185 (336)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 88665
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0051 Score=53.90 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=48.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEE-EeCCCCCCch--hhhhhhhhcCCCCccEEEEccCCCHHHHHHHH-hh
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNMG--AVKVLQELFPQPGQLQFIYADLGDAKAVNKIF-AE 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~ 122 (393)
|.||||.|+|+ |.+|+.+++.+.+.++++.+ +++....... ....+.++. +.+ +..|++.++.+.+.+ .+
T Consensus 1 M~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~----~~D-VvIDft~p~a~~~~~~l~ 74 (243)
T 3qy9_A 1 MASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK----GAD-VAIDFSNPNLLFPLLDED 74 (243)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT----TCS-EEEECSCHHHHHHHHTSC
T ss_pred CCceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh----CCC-EEEEeCChHHHHHHHHHh
Confidence 34799999999 99999999999998777776 4443221000 001111111 222 235788887766665 23
Q ss_pred CCCcEEEEccc
Q 016208 123 NAFDAVMHFAA 133 (393)
Q Consensus 123 ~~~d~Vi~~A~ 133 (393)
.+..+|+...|
T Consensus 75 ~g~~vVigTTG 85 (243)
T 3qy9_A 75 FHLPLVVATTG 85 (243)
T ss_dssp CCCCEEECCCS
T ss_pred cCCceEeCCCC
Confidence 45677776554
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0042 Score=57.85 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=56.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+++|.|.||||++|..|++.|.++++ ++..+.- .+....... + ......+...|. + .+ .++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as-~~saG~~~~-~-----~~~~~~~~~~~~---~----~~--~~~ 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS-ARSAGKSLK-F-----KDQDITIEETTE---T----AF--EGV 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC-TTTTTCEEE-E-----TTEEEEEEECCT---T----TT--TTC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc-cccCCCcce-e-----cCCCceEeeCCH---H----Hh--cCC
Confidence 37999999999999999999998866 3444432 111111111 0 001222222231 1 13 589
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
|+||.+++.. .+...+..+.+.|+ ++|=.|+..
T Consensus 66 Dvvf~a~~~~------------------~s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 66 DIALFSAGSS------------------TSAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCChH------------------hHHHHHHHHHHCCC-EEEEcCCcc
Confidence 9999988632 23455666667787 688888864
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00098 Score=61.89 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=50.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+++|||+||+|.+|..+++.+...|.+|++++++.. ..+.+.++ +... ..|..+. +.+.+.....++
T Consensus 167 g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~~~~-----ga~~-~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED----KLRRAKAL-----GADE-TVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp TCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHH-----TCSE-EEETTSTTHHHHHHHHTTTTCE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhc-----CCCE-EEcCCcccHHHHHHHHhCCCCc
Confidence 479999999999999999999999999999887432 22222332 1211 1355443 234443322479
Q ss_pred cEEEEccc
Q 016208 126 DAVMHFAA 133 (393)
Q Consensus 126 d~Vi~~A~ 133 (393)
|+||+++|
T Consensus 237 d~vi~~~g 244 (343)
T 2eih_A 237 DKVVDHTG 244 (343)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999998
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0043 Score=58.10 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=58.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhh-hhhhhcCC-----CCccEEEEccCCCHHHHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVK-VLQELFPQ-----PGQLQFIYADLGDAKAVNKI 119 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~ 119 (393)
|.|+||.|.||||++|..|++.|.++. .++..+.-+.+..-.... ..+.+... .....+...|..+ .
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~------~ 90 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEG------N 90 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCT------T
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhh------h
Confidence 566899999999999999999888875 367554312222111111 11110000 0112222222210 1
Q ss_pred HhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeeccee
Q 016208 120 FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCAT 178 (393)
Q Consensus 120 ~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~v 178 (393)
+ .++|+||.+.+.. .+..+...+.+.|+ ++|=.|+..-
T Consensus 91 ~--~~~Dvvf~alp~~------------------~s~~~~~~~~~~G~-~VIDlSa~fR 128 (381)
T 3hsk_A 91 F--LECDVVFSGLDAD------------------VAGDIEKSFVEAGL-AVVSNAKNYR 128 (381)
T ss_dssp G--GGCSEEEECCCHH------------------HHHHHHHHHHHTTC-EEEECCSTTT
T ss_pred c--ccCCEEEECCChh------------------HHHHHHHHHHhCCC-EEEEcCCccc
Confidence 3 5799999887532 23456666667787 6888888543
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0032 Score=59.87 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 42 FPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 42 ~~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
|...+|.+++|+|+| .|.+|+.+++.+.+.|++|++++ ......... ......+.+|..|.+.+.+++
T Consensus 17 ~~~~mm~~~~I~ilG-gG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~---------ad~~~~~~~~~~d~~~l~~~a- 84 (403)
T 3k5i_A 17 FQGHMWNSRKVGVLG-GGQLGRMLVESANRLNIQVNVLD-ADNSPAKQI---------SAHDGHVTGSFKEREAVRQLA- 84 (403)
T ss_dssp ----CCSCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGG---------CCSSCCEESCTTCHHHHHHHH-
T ss_pred EeccCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHh---------ccccceeecCCCCHHHHHHHH-
Confidence 344456678999999 58999999999999999999998 432222110 011245778999999999999
Q ss_pred hCCCcEEEE
Q 016208 122 ENAFDAVMH 130 (393)
Q Consensus 122 ~~~~d~Vi~ 130 (393)
..+|+|+.
T Consensus 85 -~~~d~i~~ 92 (403)
T 3k5i_A 85 -KTCDVVTA 92 (403)
T ss_dssp -TTCSEEEE
T ss_pred -HhCCEEEE
Confidence 67898874
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0074 Score=52.96 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=86.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH---HhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI---FAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~~~~~ 125 (393)
|||.|+|++|.+|+.+++.+.+. |+++.++.....+.. +.+. .+.. +..|.+.++.+.+. +.+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~---~~~~------~~~D-vvIDfT~p~a~~~~~~~a~~~g~ 70 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLS---LLTD------GNTE-VVIDFTHPDVVMGNLEFLIDNGI 70 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTH---HHHH------TTCC-EEEECSCTTTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHH---HHhc------cCCc-EEEEccChHHHHHHHHHHHHcCC
Confidence 58999999999999999999876 899987654332111 1111 1222 44566666554433 233678
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceee-----------cCC-CCCCCCCCC-
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATY-----------GEP-DKMPITEST- 191 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vy-----------g~~-~~~~~~E~~- 191 (393)
++|+=..|... +....+.++|++. ++ .+++.+..+.= ... ++-.+.|..
T Consensus 71 ~~VigTTG~~~----------------e~~~~l~~aa~~~~~~-~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH 133 (245)
T 1p9l_A 71 HAVVGTTGFTA----------------ERFQQVESWLVAKPNT-SVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHH 133 (245)
T ss_dssp EEEECCCCCCH----------------HHHHHHHHHHHTSTTC-EEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEEC
T ss_pred CEEEcCCCCCH----------------HHHHHHHHHHHhCCCC-CEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECcc
Confidence 88876554210 1123455666655 55 46666554330 000 011222222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHh-------------------hCCCcEEEEeeccccCCC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSK-------------------TTNMAVMILRYFNVIGSD 233 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~-------------------~~g~~~~ilRp~~v~G~~ 233 (393)
..+...|=|-++..+|.+...... ..++.+-.+|.|.+.|..
T Consensus 134 ~~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~h 194 (245)
T 1p9l_A 134 PHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQ 194 (245)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeEE
Confidence 122233457777777777543210 025678888888888863
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=50.77 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=28.5
Q ss_pred CcEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEe
Q 016208 49 VTHVLVTGGA---GYIGSHAALRLLKDSYRVTIVD 80 (393)
Q Consensus 49 ~~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~ 80 (393)
.++|.|+|++ |.+|..+++.|.+.|++|+.++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vn 56 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVN 56 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEEC
Confidence 3789999998 8999999999999999987764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0053 Score=56.35 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEE-ccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIY-ADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~~~~~~~~~~~~~~ 124 (393)
.+|||.|+|| |.+|..++..|...|+ +|.++++...........+..... .....++.. .|+ +++ .+
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-------~al--~~ 72 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-------DDL--AG 72 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-------GGG--TT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-------HHh--CC
Confidence 3579999997 9999999999999998 888887754322222222222100 011222222 342 335 79
Q ss_pred CcEEEEcccccCccCCc---cChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Q 016208 125 FDAVMHFAAVAYVGEST---LEPLRYYHNITSNTLVILEAMAAHKVK-TLIYS 173 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~ 173 (393)
+|+||.+++...-.... .........|+.-.+.+.+.+.+.... .+|.+
T Consensus 73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 125 (322)
T 1t2d_A 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 125 (322)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 99999999754211100 003445667777777888777766433 34444
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0047 Score=56.09 Aligned_cols=104 Identities=16% Similarity=0.268 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhh-------hhhhcCCCCccEEEEccCCCHHHHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV-------LQELFPQPGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
.|+||-++| .|.+|..+++.|++.||+|++.+|.........+. ..++ -...+++..=+.+.+.+++.+
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~---~~~~dvv~~~l~~~~~v~~V~ 77 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA---VQGADVVISMLPASQHVEGLY 77 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH---HTTCSEEEECCSCHHHHHHHH
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHH---HhcCCceeecCCchHHHHHHH
Confidence 578999999 89999999999999999999998854322211111 0111 134566777777888888876
Q ss_pred hhC--------CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 121 AEN--------AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 121 ~~~--------~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
... .=++||++.... ...++.+.+.+.+.|+ +||=
T Consensus 78 ~~~~g~~~~~~~g~iiId~sT~~----------------p~~~~~~a~~~~~~G~-~~lD 120 (300)
T 3obb_A 78 LDDDGLLAHIAPGTLVLECSTIA----------------PTSARKIHAAARERGL-AMLD 120 (300)
T ss_dssp HSSSSSTTSCCC-CEEEECSCCC----------------HHHHHHHHHHHHTTTC-EEEE
T ss_pred hchhhhhhcCCCCCEEEECCCCC----------------HHHHHHHHHHHHHcCC-EEEe
Confidence 321 124677776542 2346678888888887 5653
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.007 Score=56.51 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=54.9
Q ss_pred CcEEEEEcCCChhHHHHHHH-HHHCCC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALR-LLKDSY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~-L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|+||.|.||||++|+.|++. |.++++ +++.+...+... .+..+ .+......|..+++. + .+
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~-----~v~~~----~g~~i~~~~~~~~~~----~--~~ 65 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ-----AAPSF----GGTTGTLQDAFDLEA----L--KA 65 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS-----BCCGG----GTCCCBCEETTCHHH----H--HT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC-----Ccccc----CCCceEEEecCChHH----h--cC
Confidence 67999999999999999994 555554 455554322111 11111 011222234445544 3 38
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeec
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSST 175 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS 175 (393)
+|+||.+.+.. .+..+...+.+.|++ .+|=.||
T Consensus 66 ~DvVf~a~g~~------------------~s~~~a~~~~~~G~k~vVID~ss 99 (367)
T 1t4b_A 66 LDIIVTCQGGD------------------YTNEIYPKLRESGWQGYWIDAAS 99 (367)
T ss_dssp CSEEEECSCHH------------------HHHHHHHHHHHTTCCCEEEECSS
T ss_pred CCEEEECCCch------------------hHHHHHHHHHHCCCCEEEEcCCh
Confidence 99999988632 244566666777874 4454555
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0002 Score=57.67 Aligned_cols=71 Identities=14% Similarity=0.297 Sum_probs=47.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++|+|+|+ |.+|+.+++.|...|++|++++|....... ...++ ++... ...+ +.+++ .++|+|
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~---~a~~~-----~~~~~--~~~~---~~~~~--~~~Div 84 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRA---FAEKY-----EYEYV--LIND---IDSLI--KNNDVI 84 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHH---HHHHH-----TCEEE--ECSC---HHHHH--HTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHH---HHHHh-----CCceE--eecC---HHHHh--cCCCEE
Confidence 379999995 999999999999999998888874322211 11121 12222 2223 34556 579999
Q ss_pred EEccccc
Q 016208 129 MHFAAVA 135 (393)
Q Consensus 129 i~~A~~~ 135 (393)
|.+.+..
T Consensus 85 i~at~~~ 91 (144)
T 3oj0_A 85 ITATSSK 91 (144)
T ss_dssp EECSCCS
T ss_pred EEeCCCC
Confidence 9988754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0048 Score=55.33 Aligned_cols=99 Identities=13% Similarity=0.211 Sum_probs=57.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+.|+||.|.|++|.+|+.+++.+.+. +.++.+. ++...... -..+.++.... ..++.-.+++.+++ .+
T Consensus 19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~--G~d~gel~G~~------~~gv~v~~dl~~ll--~~ 88 (288)
T 3ijp_A 19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV--DKDASILIGSD------FLGVRITDDPESAF--SN 88 (288)
T ss_dssp --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT--TSBGGGGTTCS------CCSCBCBSCHHHHT--TS
T ss_pred cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--ccchHHhhccC------cCCceeeCCHHHHh--cC
Confidence 34579999999999999999999865 6787776 34222111 01111111100 01111122345566 58
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
+|+||.+..+ ..+...++.|.++|+ .+|.-+
T Consensus 89 aDVvIDFT~p------------------~a~~~~~~~~l~~Gv-~vViGT 119 (288)
T 3ijp_A 89 TEGILDFSQP------------------QASVLYANYAAQKSL-IHIIGT 119 (288)
T ss_dssp CSEEEECSCH------------------HHHHHHHHHHHHHTC-EEEECC
T ss_pred CCEEEEcCCH------------------HHHHHHHHHHHHcCC-CEEEEC
Confidence 9999988632 234566778888887 455433
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0017 Score=60.72 Aligned_cols=76 Identities=21% Similarity=0.144 Sum_probs=48.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~ 127 (393)
+.+|||+||+|.+|..+++.+...|.+|+++++... ..+.+.++ +--..+..+-.+. +.+.+.. ..++|+
T Consensus 164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~~~~----Ga~~~~~~~~~~~~~~~~~~~-~~g~D~ 234 (362)
T 2c0c_A 164 GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDE----KSAFLKSL----GCDRPINYKTEPVGTVLKQEY-PEGVDV 234 (362)
T ss_dssp TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT----TCSEEEETTTSCHHHHHHHHC-TTCEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHH----HHHHHHHc----CCcEEEecCChhHHHHHHHhc-CCCCCE
Confidence 479999999999999999999999999999887422 22223332 1112222221222 2233322 247999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||+++|
T Consensus 235 vid~~g 240 (362)
T 2c0c_A 235 VYESVG 240 (362)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 999987
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0061 Score=57.30 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+.+++|+|+| .|.+|+.+++.+.+.|++|++++......... -.-.++.+|..|.+.+.++. ..+
T Consensus 9 ~~~~~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~-----------~ad~~~~~~~~d~~~l~~~~--~~~ 74 (377)
T 3orq_A 9 LKFGATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRY-----------VAHEFIQAKYDDEKALNQLG--QKC 74 (377)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTGG-----------GSSEEEECCTTCHHHHHHHH--HHC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChhhh-----------hCCEEEECCCCCHHHHHHHH--HhC
Confidence 34568999999 69999999999999999999998643322110 12246678999999999998 458
Q ss_pred cEEEE
Q 016208 126 DAVMH 130 (393)
Q Consensus 126 d~Vi~ 130 (393)
|+|..
T Consensus 75 dvi~~ 79 (377)
T 3orq_A 75 DVITY 79 (377)
T ss_dssp SEEEE
T ss_pred Cccee
Confidence 98754
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0025 Score=57.93 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.|++|.|+||.|.+|..++..|.+.|++|++++|.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~ 54 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE 54 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 35689999999999999999999999999998763
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0084 Score=54.73 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=34.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
....||+|.|+| .|.+|..+++.|.+.|++|++.+|...
T Consensus 17 ~~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 17 RGSHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp -CCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred ccccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 356789999999 799999999999999999999988543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.011 Score=54.96 Aligned_cols=120 Identities=16% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-----eEEEEeCCCCCCch-hhhhhhhhcCCC-CccEEEEccCCCHHHHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-----RVTIVDNLSRGNMG-AVKVLQELFPQP-GQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~-~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~ 120 (393)
..+||.|+||+|+||++++-.|+..+. ++...+........ +.....++.... +-..-+..- .+ ..+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~-~~---~y~~~ 106 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-ID---PYEVF 106 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SC---HHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe-cC---CHHHh
Confidence 457999999999999999999988753 26654432222111 111112221111 111111111 11 24556
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CC-cEEEEeec
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KV-KTLIYSST 175 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~~V~~SS 175 (393)
.++|+||-.||...- ........++.|+.-.+.+.+.+.+. +. ..+|.+|-
T Consensus 107 --~daDvVVitag~prk--pG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 107 --EDVDWALLIGAKPRG--PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp --TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --CCCCEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 799999999986432 23456778999999999999998874 32 24555553
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0058 Score=55.10 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=58.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.++|+|.|+||-.|+.+++.|.+.|++++........... . .++.+ ..++.++.++..+|++
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~-------i----~G~~v-------y~sl~el~~~~~~Dv~ 68 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME-------V----LGVPV-------YDTVKEAVAHHEVDAS 68 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE-------E----TTEEE-------ESSHHHHHHHSCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCce-------E----CCEEe-------eCCHHHHhhcCCCCEE
Confidence 3799999999999999999999999986532221110000 0 12222 2223445533489999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|.+... ..+..+++.|.+.|++.+|.+++
T Consensus 69 Ii~vp~------------------~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 69 IIFVPA------------------PAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp EECCCH------------------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred EEecCH------------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 866532 23557788888899976777665
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0038 Score=56.99 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=67.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
||+|.|+| +|.+|..++..|.+.| ++|++++|...........+.... .....+.....|. +.+ .++
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-------~~~--~~a 70 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AAL--ADA 70 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGG--TTC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-------HHh--CCC
Confidence 57999999 7999999999999999 899999874322222221121110 0011233333332 235 689
Q ss_pred cEEEEcccccCc----cCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Q 016208 126 DAVMHFAAVAYV----GESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYS 173 (393)
Q Consensus 126 d~Vi~~A~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~ 173 (393)
|+||-+++.... + ..........|+.....+++.+.+...+ .+|.+
T Consensus 71 DvViiav~~~~~~~~~~--g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~ 121 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNP--TGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121 (309)
T ss_dssp SEEEECCSCGGGTC---------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEEecCCcccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 999998875331 1 1122335567777778888888765433 34443
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.007 Score=57.04 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+|+|+|+|+ |.+|..+++.+.+.|++|++++....... .. ..-.++..|..|.+.+.+++++.++|
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~--~~---------~~d~~~~~~~~d~~~l~~~~~~~~~d 76 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPA--MH---------VAHRSHVINMLDGDALRRVVELEKPH 76 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGG--GG---------GSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCch--hh---------hccceEECCCCCHHHHHHHHHHcCCC
Confidence 34589999985 89999999999999999999876432211 00 01235667888999999988777999
Q ss_pred EEEEcc
Q 016208 127 AVMHFA 132 (393)
Q Consensus 127 ~Vi~~A 132 (393)
+|+...
T Consensus 77 ~v~~~~ 82 (391)
T 1kjq_A 77 YIVPEI 82 (391)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998643
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0027 Score=50.52 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCcEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEeC
Q 016208 48 GVTHVLVTGGA---GYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 48 ~~~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~r 81 (393)
..++|.|+|+| |-+|..+++.|++.|++|+.+++
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCC
Confidence 34799999987 89999999999999999888754
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=59.06 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|+ |.+|++++..|.+.|. +|++++|...+.....+.+.... ..+.+...+..+ +.+.+ .++|
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~---~~~~i~~~~~~~---l~~~l--~~~D 196 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV---GREAVVGVDARG---IEDVI--AAAD 196 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHH---TSCCEEEECSTT---HHHHH--HHSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhc---CCceEEEcCHHH---HHHHH--hcCC
Confidence 3479999996 9999999999999998 79998875433333333333211 123333444433 44555 5689
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+....
T Consensus 197 iVInaTp~G 205 (283)
T 3jyo_A 197 GVVNATPMG 205 (283)
T ss_dssp EEEECSSTT
T ss_pred EEEECCCCC
Confidence 999998654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0018 Score=51.77 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=28.2
Q ss_pred cEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEe
Q 016208 50 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVD 80 (393)
Q Consensus 50 ~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~ 80 (393)
++|.|+|+| |-+|..+++.|.+.|++|+.++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vn 47 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN 47 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeC
Confidence 789999998 8999999999999999977764
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0089 Score=54.32 Aligned_cols=35 Identities=26% Similarity=0.164 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.+|+|.|+| .|.+|..+++.|.+.|++|++.+|..
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 447999998 79999999999999999999998753
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0089 Score=54.55 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=69.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEE-ccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIY-ADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~~~~~~~~~~~~~~~ 125 (393)
|||.|+|+ |.+|..++..|... |++|+++++...........+.+... ......+.. .|. .+ + .++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~------~~-l--~~a 70 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY------AD-T--ANS 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG------GG-G--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCH------HH-H--CCC
Confidence 58999997 99999999999985 79999998854322221111111000 001222221 232 22 5 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
|+||-+++.... ........+..|+.....+.+.+.+...+ .+|.+|
T Consensus 71 DvViiav~~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 71 DIVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 999999874321 12234567778888888888888776433 444443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0025 Score=58.00 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=50.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+.+|+|+||+|.+|..+++.+...|.+|++++++..... .+.++ +...+ .|..+.+++.+.+ .++|+|
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~----~~~~~-----ga~~~-~~~~~~~~~~~~~--~~~d~v 193 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA----LPLAL-----GAEEA-ATYAEVPERAKAW--GGLDLV 193 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH----HHHHT-----TCSEE-EEGGGHHHHHHHT--TSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHhc-----CCCEE-EECCcchhHHHHh--cCceEE
Confidence 469999999999999999999999999999987443222 22222 22221 3444423444444 689999
Q ss_pred EEcccc
Q 016208 129 MHFAAV 134 (393)
Q Consensus 129 i~~A~~ 134 (393)
|+ +|.
T Consensus 194 id-~g~ 198 (302)
T 1iz0_A 194 LE-VRG 198 (302)
T ss_dssp EE-CSC
T ss_pred EE-CCH
Confidence 99 874
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.002 Score=59.85 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=50.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~ 124 (393)
+.+|+|+|++|.+|..+++.+... |.+|++++++.. ..+.++++. .. .. .|..+. +.+.+.....+
T Consensus 171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~----~~~~~~~~g---~~-~~--~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE----AVEAAKRAG---AD-YV--INASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH----HHHHHHHHT---CS-EE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHhC---CC-EE--ecCCCccHHHHHHHHhcCCC
Confidence 479999999999999999999999 999999876432 222223321 11 12 243332 23444432137
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||+++|.
T Consensus 241 ~d~vi~~~g~ 250 (347)
T 1jvb_A 241 VDAVIDLNNS 250 (347)
T ss_dssp EEEEEESCCC
T ss_pred ceEEEECCCC
Confidence 9999999984
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0043 Score=57.78 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcC--CC---CccEEEEccCCCHHHHHHHHh
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFP--QP---GQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~--~~---~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
.++||.|+||||++|..|++.|.++. .++..+...........+..+.... .. ....+...| .+ .+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~---~~----~~- 77 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTD---PK----LM- 77 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECC---GG----GC-
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCC---HH----Hh-
Confidence 35799999999999999999887764 4666654322211111111110000 00 012222222 11 13
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
.++|+||.+.+... +..+...+.+.|+ ++|=.|+..
T Consensus 78 -~~vDvvf~a~p~~~------------------s~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpk_A 78 -DDVDIIFSPLPQGA------------------AGPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp -TTCCEEEECCCTTT------------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred -cCCCEEEECCChHH------------------HHHHHHHHHHCCC-EEEEcCCCc
Confidence 58999998876431 2345555667787 788888864
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0043 Score=57.78 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcC--CC---CccEEEEccCCCHHHHHHHHh
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFP--QP---GQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~--~~---~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
.++||.|+||||++|..|++.|.++. .++..+...........+..+.... .. ....+...| .+ .+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~---~~----~~- 77 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTD---PK----LM- 77 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECC---GG----GC-
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCC---HH----Hh-
Confidence 35799999999999999999887764 4666654322211111111110000 00 012222222 11 13
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
.++|+||.+.+... +..+...+.+.|+ ++|=.|+..
T Consensus 78 -~~vDvvf~a~p~~~------------------s~~~a~~~~~~G~-~vIDlSa~~ 113 (359)
T 4dpl_A 78 -DDVDIIFSPLPQGA------------------AGPVEEQFAKEGF-PVISNSPDH 113 (359)
T ss_dssp -TTCCEEEECCCTTT------------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred -cCCCEEEECCChHH------------------HHHHHHHHHHCCC-EEEEcCCCc
Confidence 58999998876431 2345555667787 788888864
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0027 Score=59.08 Aligned_cols=77 Identities=9% Similarity=0.170 Sum_probs=50.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC-HHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD-AKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~V 128 (393)
++|+|+||+|.+|...++.+...|.+|++++++..+ .+.++++ +--..+..+-.+ .+.+.+.....++|+|
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~----~~~~~~~----Ga~~~~~~~~~~~~~~v~~~~~~~g~D~v 237 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQ----IALLKDI----GAAHVLNEKAPDFEATLREVMKAEQPRIF 237 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGG----HHHHHHH----TCSEEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHc----CCCEEEECCcHHHHHHHHHHhcCCCCcEE
Confidence 689999999999999999999999999999874432 2222333 111222222122 2334444433589999
Q ss_pred EEcccc
Q 016208 129 MHFAAV 134 (393)
Q Consensus 129 i~~A~~ 134 (393)
|+++|.
T Consensus 238 id~~g~ 243 (349)
T 3pi7_A 238 LDAVTG 243 (349)
T ss_dssp EESSCH
T ss_pred EECCCC
Confidence 999974
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0076 Score=55.98 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEe
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 80 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~ 80 (393)
.|+||.|.||+|++|+.+++.|.++. .++.++.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 46899999999999999999998764 4787775
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0045 Score=59.07 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+.+++|+|+| .|.+|+.+++.+.+.|++|++++....... ..+ .-..+..|..|.+.+.+++ .++
T Consensus 32 ~~~~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~---~~~--------ad~~~~~~~~d~~~l~~~a--~~~ 97 (419)
T 4e4t_A 32 ILPGAWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDPASPA---GAV--------ADRHLRAAYDDEAALAELA--GLC 97 (419)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCTTCHH---HHH--------SSEEECCCTTCHHHHHHHH--HHC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCcCch---hhh--------CCEEEECCcCCHHHHHHHH--hcC
Confidence 34568999999 599999999999999999999865322211 110 1245668999999999998 689
Q ss_pred cEEEE
Q 016208 126 DAVMH 130 (393)
Q Consensus 126 d~Vi~ 130 (393)
|+|+.
T Consensus 98 D~V~~ 102 (419)
T 4e4t_A 98 EAVST 102 (419)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99983
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0014 Score=61.30 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++|+|+|+ |-+|..+++.|...|.+|++++|..... +.+.+... ..+.. +..+.+++.+.+ .++|+
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~----~~~~~~~~--~~~~~---~~~~~~~~~~~~--~~~Dv 233 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL----SYLETLFG--SRVEL---LYSNSAEIETAV--AEADL 233 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHG--GGSEE---EECCHHHHHHHH--HTCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH----HHHHHhhC--ceeEe---eeCCHHHHHHHH--cCCCE
Confidence 3479999998 9999999999999999999998853222 22222111 11211 223456677777 58999
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
||++++..
T Consensus 234 VI~~~~~~ 241 (361)
T 1pjc_A 234 LIGAVLVP 241 (361)
T ss_dssp EEECCCCT
T ss_pred EEECCCcC
Confidence 99999763
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.015 Score=52.60 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=32.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN 86 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 86 (393)
+|+|.|+| .|.+|..+++.|.+.|++|++++|.....
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~ 51 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAM 51 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 36899999 79999999999999999999998865543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0019 Score=58.68 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++|+|+|+ |.+|+.++..|.+.|. +|++++|...+.. +....+... .. ++.+.+++.+.+ .++|
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~---~la~~~~~~-~~------~~~~~~~~~~~~--~~aD 206 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAE---RLVREGDER-RS------AYFSLAEAETRL--AEYD 206 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHH---HHHHHSCSS-SC------CEECHHHHHHTG--GGCS
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHH---HHHHHhhhc-cC------ceeeHHHHHhhh--ccCC
Confidence 3479999996 8899999999999997 9999877432222 111221110 00 122335566666 6899
Q ss_pred EEEEcccccC
Q 016208 127 AVMHFAAVAY 136 (393)
Q Consensus 127 ~Vi~~A~~~~ 136 (393)
+||++.+...
T Consensus 207 ivIn~t~~~~ 216 (297)
T 2egg_A 207 IIINTTSVGM 216 (297)
T ss_dssp EEEECSCTTC
T ss_pred EEEECCCCCC
Confidence 9999998653
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0089 Score=56.14 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=52.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|++|+|+|+ |..|+.+++.|.+.|++|++++........ .+ .-.++..|..|.+.+.+++ .++|.|
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~------~~-----~~~~~~~~~~d~~~l~~~~--~~~d~v 66 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAG------QV-----ADEQIVAGFFDSERIEDLV--KGSDVT 66 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTG------GG-----SSEEEECCTTCHHHHHHHH--HTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchh------hh-----CceEEECCCCCHHHHHHHH--hcCCEE
Confidence 679999995 899999999999999999998764322110 00 1135668899999999988 689998
Q ss_pred EEc
Q 016208 129 MHF 131 (393)
Q Consensus 129 i~~ 131 (393)
+..
T Consensus 67 ~~~ 69 (380)
T 3ax6_A 67 TYD 69 (380)
T ss_dssp EES
T ss_pred Eec
Confidence 854
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0032 Score=58.99 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC--HHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD--AKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~ 125 (393)
.+.+|+|+|+ |.+|..+++.+...|.+|+++++... .....+.+.++ ++..+ | .+ .+.+.+ .. .++
T Consensus 180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~~~~~~-----ga~~v--~-~~~~~~~~~~-~~-~~~ 247 (366)
T 2cdc_A 180 NCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREP-TEVEQTVIEET-----KTNYY--N-SSNGYDKLKD-SV-GKF 247 (366)
T ss_dssp TTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCC-CHHHHHHHHHH-----TCEEE--E-CTTCSHHHHH-HH-CCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCcc-chHHHHHHHHh-----CCcee--c-hHHHHHHHHH-hC-CCC
Confidence 3579999999 99999999999999999999987541 11122333332 34444 4 33 233444 22 689
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||+++|.
T Consensus 248 d~vid~~g~ 256 (366)
T 2cdc_A 248 DVIIDATGA 256 (366)
T ss_dssp EEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999985
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0031 Score=58.54 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+.+|||+||+|.+|...++.+...|.+|+++++... ..+.+.++. --..+..+-...+.+.+. ...++|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lG----a~~vi~~~~~~~~~~~~~-~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE----TIEWTKKMG----ADIVLNHKESLLNQFKTQ-GIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH----HHHHHHHHT----CSEEECTTSCHHHHHHHH-TCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcC----CcEEEECCccHHHHHHHh-CCCCccE
Confidence 3479999999999999999999999999999876322 223333331 112222211112334443 3357999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||++++.
T Consensus 221 v~d~~g~ 227 (346)
T 3fbg_A 221 VFCTFNT 227 (346)
T ss_dssp EEESSCH
T ss_pred EEECCCc
Confidence 9999873
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0026 Score=54.97 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEE-EeCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTI-VDNL 82 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~-~~r~ 82 (393)
.|.||+|.|+| +|.+|.++++.|.+.|++|++ .+|.
T Consensus 20 ~m~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~ 56 (220)
T 4huj_A 20 FQSMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRG 56 (220)
T ss_dssp GGGSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hhcCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 35678999999 899999999999999999998 6553
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0009 Score=60.54 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+++++|+|+ |.+|+++++.|.+.| +|++++|.........+.+...... .. .+.+|+.+. .+.+ .++|+
T Consensus 127 ~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~--~~-~~~~d~~~~---~~~~--~~~Di 196 (287)
T 1nvt_A 127 KDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK--KF-GEEVKFSGL---DVDL--DGVDI 196 (287)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC--CH-HHHEEEECT---TCCC--TTCCE
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccc--cc-ceeEEEeeH---HHhh--CCCCE
Confidence 3479999997 599999999999999 9999877432222222222110000 00 011222221 2233 57999
Q ss_pred EEEcccccC
Q 016208 128 VMHFAAVAY 136 (393)
Q Consensus 128 Vi~~A~~~~ 136 (393)
||++++...
T Consensus 197 lVn~ag~~~ 205 (287)
T 1nvt_A 197 IINATPIGM 205 (287)
T ss_dssp EEECSCTTC
T ss_pred EEECCCCCC
Confidence 999998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0041 Score=57.65 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=50.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~ 127 (393)
+.+|||+||+|.+|...++.+...|.+|+++ ++.. ..+.++++ +...+. +-.+. +.+.+.....++|+
T Consensus 151 g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~----~~~~~~~l-----Ga~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 151 GQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS----DLEYVRDL-----GATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH----HHHHHHHH-----TSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH----HHHHHHHc-----CCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 4799999999999999999999999999987 4221 22333333 233332 22232 33445444458999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||+++|
T Consensus 220 vid~~g 225 (343)
T 3gaz_A 220 VYDTLG 225 (343)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999987
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=56.77 Aligned_cols=93 Identities=12% Similarity=0.179 Sum_probs=60.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEE--ccCCCHHH-HHHHHhh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY--ADLGDAKA-VNKIFAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~Dl~~~~~-~~~~~~~ 122 (393)
+||+|+| .|.||+.++..|.++ ++ +|++++...... +. .... ++.+.. .|..|.++ +.++++
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~~---~~~~-----g~~~~~~~Vdadnv~~~l~aLl~- 82 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-DV---AQQY-----GVSFKLQQITPQNYLEVIGSTLE- 82 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-CH---HHHH-----TCEEEECCCCTTTHHHHTGGGCC-
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-hH---Hhhc-----CCceeEEeccchhHHHHHHHHhc-
Confidence 6899999 799999999999987 44 688876533222 11 1111 344444 45556655 455774
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
+.|+|||++-.. ....++++|.++|+ .+|=+
T Consensus 83 -~~DvVIN~s~~~------------------~~l~Im~acleaGv-~YlDT 113 (480)
T 2ph5_A 83 -ENDFLIDVSIGI------------------SSLALIILCNQKGA-LYINA 113 (480)
T ss_dssp -TTCEEEECCSSS------------------CHHHHHHHHHHHTC-EEEES
T ss_pred -CCCEEEECCccc------------------cCHHHHHHHHHcCC-CEEEC
Confidence 359999866322 14479999999987 45533
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.022 Score=51.60 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=60.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhh-------hhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV-------LQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
+||.++| .|.+|..+++.|++.||+|++.+|.........+. ..++ -...+++..=+.+++.+.+.+..
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~---~~~~dvvi~~l~~~~~~~~v~~~ 81 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDA---ITPGGIVFSVLADDAAVEELFSM 81 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGG---CCTTCEEEECCSSHHHHHHHSCH
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHH---HhcCCceeeeccchhhHHHHHHH
Confidence 4899999 89999999999999999999998865443322211 1111 12345555556666555543211
Q ss_pred ------CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 123 ------NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 123 ------~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
..-++||++.... -..++.+.+.+.+.|+ +||-
T Consensus 82 ~~~~~~~~~~iiid~sT~~----------------p~~~~~~~~~~~~~g~-~~ld 120 (297)
T 4gbj_A 82 ELVEKLGKDGVHVSMSTIS----------------PETSRQLAQVHEWYGA-HYVG 120 (297)
T ss_dssp HHHHHHCTTCEEEECSCCC----------------HHHHHHHHHHHHHTTC-EEEE
T ss_pred HHHhhcCCCeEEEECCCCC----------------hHHHHHHHHHHHhcCC-ceec
Confidence 3456777776542 1235667778888887 5654
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=56.50 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+|+|+|+|+ |.+|..+++.+.+.|++|++++....... .. . .-..+..|..|.+.+.+++++.++|+
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~~~~--~~----~-----ad~~~~~~~~d~~~l~~~~~~~~~d~ 85 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYANAPA--MQ----V-----AHRSYVGNMMDKDFLWSVVEREKPDA 85 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTTCHH--HH----H-----SSEEEESCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChh--hh----h-----cceEEECCCCCHHHHHHHHHHcCCCE
Confidence 3579999996 89999999999999999999876432211 10 0 12356678889999999887779999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
|+....
T Consensus 86 V~~~~e 91 (433)
T 2dwc_A 86 IIPEIE 91 (433)
T ss_dssp EEECSS
T ss_pred EEECcc
Confidence 987543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0053 Score=57.48 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=51.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhh-hhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQ-ELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+.+|||+|+ |.||..+++.+...|.+|++++++..... .+. ++ +... ..|..+.+.+.++. .++|+
T Consensus 188 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~----~~~~~l-----Ga~~-v~~~~~~~~~~~~~--~~~D~ 254 (366)
T 1yqd_A 188 GKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKE----EALKNF-----GADS-FLVSRDQEQMQAAA--GTLDG 254 (366)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHH----HHHHTS-----CCSE-EEETTCHHHHHHTT--TCEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHhc-----CCce-EEeccCHHHHHHhh--CCCCE
Confidence 479999996 99999999999999999999887432211 111 22 2221 23566666666655 58999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||+++|.
T Consensus 255 vid~~g~ 261 (366)
T 1yqd_A 255 IIDTVSA 261 (366)
T ss_dssp EEECCSS
T ss_pred EEECCCc
Confidence 9999985
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0034 Score=50.44 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.0
Q ss_pred cEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEeC
Q 016208 50 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~r 81 (393)
++|.|+|++ |-+|..+++.|++.|++|+.+++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp 48 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSP 48 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCC
Confidence 689999998 89999999999999999888754
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0096 Score=54.21 Aligned_cols=37 Identities=35% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+..+|+|.|+| .|.+|..+++.|.+.|++|++.+|..
T Consensus 6 ~~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 6 ESFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CCCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 44568999998 79999999999999999999998753
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0029 Score=58.26 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=67.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhc---CCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELF---PQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|+|.|+|| |.+|..++..|...|+ +|.++++...........+.... ....++.. ..|+ +++ .++
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~al--~~a 83 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENNY-------EYL--QNS 83 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGG--TTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCCH-------HHH--CCC
Confidence 69999997 9999999999999998 99998875432222111221110 01112221 1332 345 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEee
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSS 174 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~S 174 (393)
|+||-+++...-. ..........|+.-...+.+.+.+.... .+|.+|
T Consensus 84 D~VI~avg~p~k~--g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 84 DVVIITAGVPRKP--NMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp SEEEECCSCCCCT--TCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CEEEEcCCCCCCC--CCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999999754211 1122234566777778888877765433 344443
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0074 Score=56.64 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+.+|+|+||+|.+|..+++.+...|.+|+++++ .. ..+.++++ +...+ .|..+.+...++.+..++|+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~----~~~~~~~l-----Ga~~v-~~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QD----ASELVRKL-----GADDV-IDYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GG----GHHHHHHT-----TCSEE-EETTSSCHHHHHHTSCCBSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hH----HHHHHHHc-----CCCEE-EECCchHHHHHHhhcCCCCE
Confidence 3479999999999999999999999999998763 21 22233333 22211 24333322233332257999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||+++|.
T Consensus 252 vid~~g~ 258 (375)
T 2vn8_A 252 ILDNVGG 258 (375)
T ss_dssp EEESSCT
T ss_pred EEECCCC
Confidence 9999984
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0039 Score=56.73 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=32.8
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.+...|++|.|+|+ |.+|..++..|.+.|++|++++|..
T Consensus 10 ~~~~~~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 10 AKKIIVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp --CCCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cccccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 33456789999995 9999999999999999999998753
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.028 Score=52.38 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=54.4
Q ss_pred cEEEEEcCCChhHHHHHH-HHHHCC---CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAAL-RLLKDS---YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~-~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|+|.|+||||++|+.|++ .|.++. .++..++-.. .-.... ++. .....+ -+..+++. + .++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~--aG~~~~---~~~--~~~~~~--~~~~~~~~----~--~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ--IGVPAP---NFG--KDAGML--HDAFDIES----L--KQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS--TTSBCC---CSS--SCCCBC--EETTCHHH----H--TTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc--cCcCHH---HhC--CCceEE--EecCChhH----h--ccC
Confidence 589999999999999999 666665 3666554222 111100 110 011112 23334332 4 589
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecc
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTC 176 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~ 176 (393)
|+||.+.+.. .+..++..+.+.|++ ++|=.|+.
T Consensus 66 Dvvf~a~~~~------------------~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 66 DAVITCQGGS------------------YTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTCCCEEEECSST
T ss_pred CEEEECCChH------------------HHHHHHHHHHHCCCCEEEEeCCch
Confidence 9999988642 134555566677764 56667763
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=58.30 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.+++|.|+| .|.+|..++..|.+.|++|++++|..
T Consensus 3 ~~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 3 GITNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 468999999 59999999999999999999998754
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.016 Score=53.99 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=50.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC-CCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL-GDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~d~ 127 (393)
||+|+|+| +|..|..++..+.+.|++|++++......... ---+++..|. .+.+.+.... .++|+
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~-----------~aD~~~~~~~~~d~~~~~~~~--~~~D~ 66 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAGMKVVLVDKNPQALIRN-----------YADEFYCFDVIKEPEKLLELS--KRVDA 66 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTTT-----------TSSEEEECCTTTCHHHHHHHH--TSSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCChhHh-----------hCCEEEECCCCcCHHHHHHHh--cCCCE
Confidence 79999999 58999999999999999999997643322100 0113444554 4666666665 68999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
|+-..+
T Consensus 67 v~~~~~ 72 (363)
T 4ffl_A 67 VLPVNE 72 (363)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 876543
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.021 Score=53.34 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred CcEEEEEcCCChhHHHHHH-HHHHCC---CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAAL-RLLKDS---YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~-~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.++|.|+||||++|+.|++ .|.++. .++..++-..... ... ++. .....+ -++.+.+. + .+
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~~~---~~~--~~~~~v--~~~~~~~~----~--~~ 68 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGG--KAP---SFA--KNETTL--KDATSIDD----L--KK 68 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTS--BCC---TTC--CSCCBC--EETTCHHH----H--HT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCC--CHH---HcC--CCceEE--EeCCChhH----h--cC
Confidence 4799999999999999999 666665 3665554221111 101 110 011111 23334433 3 47
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecc
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTC 176 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~ 176 (393)
+|+||.+.+.. .+..++..+.+.|++ ++|=.|+.
T Consensus 69 vDvvf~a~~~~------------------~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 69 CDVIITCQGGD------------------YTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp CSEEEECSCHH------------------HHHHHHHHHHHTTCCSEEEECSST
T ss_pred CCEEEECCChH------------------HHHHHHHHHHHCCCCEEEEeCCcc
Confidence 99999988642 234555666677874 66667763
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0049 Score=57.93 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=53.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+..+++|+|+|+ |-||..+++.|...|.+|++++|.... .+.+.+... ..+. .+..+.+++.+.+ .++
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~----l~~~~~~~g--~~~~---~~~~~~~~l~~~l--~~a 232 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDK----LRQLDAEFC--GRIH---TRYSSAYELEGAV--KRA 232 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHTT--TSSE---EEECCHHHHHHHH--HHC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH----HHHHHHhcC--CeeE---eccCCHHHHHHHH--cCC
Confidence 345689999997 999999999999999999999874322 112222111 1121 2334566777777 579
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|+||.+++..
T Consensus 233 DvVi~~~~~p 242 (377)
T 2vhw_A 233 DLVIGAVLVP 242 (377)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCcC
Confidence 9999988743
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0092 Score=56.51 Aligned_cols=74 Identities=11% Similarity=0.058 Sum_probs=54.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+.+++|||+|+ |.++..+++.+.+.|++|++++...+... ... . .-+.+..|..|.+.+.+++++.++|
T Consensus 5 ~~~~~ilI~g~-g~~~~~~~~a~~~~G~~~v~v~~~~~~~~-~~~----~-----ad~~~~~~~~d~~~l~~~~~~~~~d 73 (403)
T 4dim_A 5 YDNKRLLILGA-GRGQLGLYKAAKELGIHTIAGTMPNAHKP-CLN----L-----ADEISYMDISNPDEVEQKVKDLNLD 73 (403)
T ss_dssp -CCCEEEEECC-CGGGHHHHHHHHHHTCEEEEEECSSCCHH-HHH----H-----CSEEEECCTTCHHHHHHHTTTSCCS
T ss_pred cCCCEEEEECC-cHhHHHHHHHHHHCCCEEEEEcCCCCCCc-chh----h-----CCeEEEecCCCHHHHHHHHHHcCCC
Confidence 45689999995 66899999999999999999865221111 111 0 1245677889999999999888899
Q ss_pred EEEEc
Q 016208 127 AVMHF 131 (393)
Q Consensus 127 ~Vi~~ 131 (393)
.|+-.
T Consensus 74 ~v~~~ 78 (403)
T 4dim_A 74 GAATC 78 (403)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 98853
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.026 Score=52.07 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=55.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
++|.|.||||++|..|++.|.++.+ ++..+.- .+..-.... + .+.....-++.. +.+ .++|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s-~~~aG~~~~-~-------~~~~~~~~~~~~-----~~~--~~~D 65 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFAS-ARSQGRKLA-F-------RGQEIEVEDAET-----ADP--SGLD 65 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC-TTTSSCEEE-E-------TTEEEEEEETTT-----SCC--TTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEEC-cccCCCcee-e-------cCCceEEEeCCH-----HHh--ccCC
Confidence 7899999999999999999998854 4555432 111111111 1 111222222221 123 5899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
+||.+++.. .+....+.+.+.|+ ++|=.|+..
T Consensus 66 vvf~a~~~~------------------~s~~~a~~~~~~G~-~vID~Sa~~ 97 (344)
T 3tz6_A 66 IALFSAGSA------------------MSKVQAPRFAAAGV-TVIDNSSAW 97 (344)
T ss_dssp EEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred EEEECCChH------------------HHHHHHHHHHhCCC-EEEECCCcc
Confidence 999988632 23455666667787 688888854
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=52.16 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=31.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
||+|.|+| .|.+|..+++.|.+.|++|++.+|...
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPA 35 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 67999998 799999999999999999999988543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0047 Score=57.58 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.+.+|+|.|+| .|.+|..+++.|.+.|++|++++|..
T Consensus 19 Mm~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp ---CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hhcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34568999999 79999999999999999999998743
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.005 Score=59.33 Aligned_cols=34 Identities=24% Similarity=0.109 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
.+.+|||+||+|.||...++.+...|.+|+++++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~ 253 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS 253 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 3479999999999999999999999999999875
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.019 Score=52.54 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=66.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhh---cCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQEL---FPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+|+|.|+|+ |.+|..++..|+..|+ +|+++++...........+... ......+.. ..|+ +.+ .+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~a~--~~ 72 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY-------ADI--SG 72 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGG--TT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH-------HHh--CC
Confidence 379999997 9999999999999998 9999987542222111111110 000112221 1232 235 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeec
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSST 175 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS 175 (393)
+|+||-+++...... ....+....|....+.+++.+.+.... .+|.+|.
T Consensus 73 aDiVi~avg~p~~~g--~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 73 SDVVIITASIPGRPK--DDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CSEEEECCCCSSCCS--SCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCEEEEeCCCCCCCC--CcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999998643221 222334556666677777777665323 3444443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0073 Score=54.04 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++|+|+|+ |.+|++++..|.+.|.+|++++|...+.....+.+... ..+.. .|+ ++ +.+ .++|+
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~----~~~~~--~~~---~~---~~~-~~~Di 183 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY----GNIQA--VSM---DS---IPL-QTYDL 183 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG----SCEEE--EEG---GG---CCC-SCCSE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc----CCeEE--eeH---HH---hcc-CCCCE
Confidence 3479999997 88999999999999999999988543322222222110 12222 232 11 111 37999
Q ss_pred EEEcccccC
Q 016208 128 VMHFAAVAY 136 (393)
Q Consensus 128 Vi~~A~~~~ 136 (393)
||++++...
T Consensus 184 vIn~t~~~~ 192 (272)
T 1p77_A 184 VINATSAGL 192 (272)
T ss_dssp EEECCCC--
T ss_pred EEECCCCCC
Confidence 999998653
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.023 Score=53.50 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+.+++|+|+| .|.+|+.+++.+.+.|++|++++......... -.-..+..+..|.+.+.+++ ..+|
T Consensus 12 ~~~k~IlIlG-~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~-----------~ad~~~~~~~~d~~~l~~~~--~~~d 77 (389)
T 3q2o_A 12 LPGKTIGIIG-GGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQ-----------VADIEIVASYDDLKAIQHLA--EISD 77 (389)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSTTCTTTT-----------TCSEEEECCTTCHHHHHHHH--HTCS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchHH-----------hCCceEecCcCCHHHHHHHH--HhCC
Confidence 4568999999 68999999999999999999997643221100 11235568999999999998 5689
Q ss_pred EEEE
Q 016208 127 AVMH 130 (393)
Q Consensus 127 ~Vi~ 130 (393)
+|..
T Consensus 78 vI~~ 81 (389)
T 3q2o_A 78 VVTY 81 (389)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 8743
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.014 Score=53.60 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=62.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC-------------------CCCchhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS-------------------RGNMGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|+| .|.+|+++++.|...|. +++++++.. .+.....+.+.++.+. -.++.+..
T Consensus 34 ~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~-v~v~~~~~ 111 (340)
T 3rui_A 34 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL-MDATGVKL 111 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTT-CEEEEECC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCC-CEEEEEec
Confidence 37999999 59999999999999996 677776532 1111223333343221 23344443
Q ss_pred cCC--------------CHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 109 DLG--------------DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 109 Dl~--------------~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
++. +.+.+.+++ .++|+||++.-... .-..+-++|...++ .+|..
T Consensus 112 ~i~~~g~~~~~~~~~~~~~~~l~~~l--~~~DlVvd~tDn~~-----------------tR~lin~~c~~~~~-plI~a 170 (340)
T 3rui_A 112 SIPMIGHKLVNEEAQHKDFDRLRALI--KEHDIIFLLVDSRE-----------------SRWLPSLLSNIENK-TVINA 170 (340)
T ss_dssp CCCCTTSCCSCHHHHHHHHHHHHHHH--HHCSEEEECCSSTG-----------------GGHHHHHHHHHTTC-EEEEE
T ss_pred cccccCcccchhhhhcCCHHHHHhhh--ccCCEEEecCCCHH-----------------HHHHHHHHHHHcCC-cEEEe
Confidence 331 234566777 67999998864221 11245577888876 46653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.016 Score=55.95 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++|+|.| .|-+|.+|++.|. .+++|.++.+.......+. +++ ++..++.||.+|.+-+.+.=- ..+|+
T Consensus 234 ~~~~v~I~G-gG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la---~~l----~~~~Vi~GD~td~~~L~ee~i-~~~D~ 303 (461)
T 4g65_A 234 PYRRIMIVG-GGNIGASLAKRLE-QTYSVKLIERNLQRAEKLS---EEL----ENTIVFCGDAADQELLTEENI-DQVDV 303 (461)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHH---HHC----TTSEEEESCTTCHHHHHHTTG-GGCSE
T ss_pred cccEEEEEc-chHHHHHHHHHhh-hcCceEEEecCHHHHHHHH---HHC----CCceEEeccccchhhHhhcCc-hhhcE
Confidence 347999999 4999999999984 5689999865332222222 222 578899999999998887632 57999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+|-+.+. + +.|+..+ ..|++.|+++.|-.-.
T Consensus 304 ~ia~T~~--------D-----e~Ni~~~----llAk~~gv~kvIa~vn 334 (461)
T 4g65_A 304 FIALTNE--------D-----ETNIMSA----MLAKRMGAKKVMVLIQ 334 (461)
T ss_dssp EEECCSC--------H-----HHHHHHH----HHHHHTTCSEEEEECS
T ss_pred EEEcccC--------c-----HHHHHHH----HHHHHcCCcccccccc
Confidence 9855431 1 2344332 3466789988886444
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0015 Score=59.65 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.||+|.|+| .|.+|..++..|.+.|++|++++|.
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 358999999 5999999999999999999999874
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0036 Score=56.08 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++|+|+|+ |.+|++++..|.+.|. +|++++|...+..... ..+.. ...+++.+++ .++|
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la----------~~~~~-----~~~~~~~~~~--~~aD 177 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS----------LNINK-----INLSHAESHL--DEFD 177 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC----------SCCEE-----ECHHHHHHTG--GGCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH----------Hhccc-----ccHhhHHHHh--cCCC
Confidence 3478999995 8999999999999998 8999888543322111 12221 1345566666 6799
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||++...
T Consensus 178 iVInaTp~ 185 (277)
T 3don_A 178 IIINTTPA 185 (277)
T ss_dssp EEEECCC-
T ss_pred EEEECccC
Confidence 99998764
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.022 Score=52.14 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
..+|+|.|+| .|.+|..+++.|.+.|++|++.+|..
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 3568999998 69999999999999999999998753
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.017 Score=52.63 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=51.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+..+|+|.|+| .|-||+.+++.|...|++|++.+|..... ..+.... ...++.+++ ..
T Consensus 135 ~~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~--------------~~~~~~~----~~~~l~ell--~~ 193 (315)
T 3pp8_A 135 YTREEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSW--------------PGVESYV----GREELRAFL--NQ 193 (315)
T ss_dssp CCSTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCC--------------TTCEEEE----SHHHHHHHH--HT
T ss_pred CCcCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhh--------------hhhhhhc----ccCCHHHHH--hh
Confidence 455678999999 79999999999999999999998854422 1222221 236778888 68
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+|+.+...
T Consensus 194 aDiV~l~~Pl 203 (315)
T 3pp8_A 194 TRVLINLLPN 203 (315)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEecCC
Confidence 9999887643
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0086 Score=55.68 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=66.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCC-------------------CchhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRG-------------------NMGAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 108 (393)
..+|+|+|+ |.+|+++++.|...|. +++++++..-. .....+.+.++.+ .-.++.+..
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~v~v~~~~~ 195 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNS-EISVSEIAL 195 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT-TSEEEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCC-CCeEEEeec
Confidence 369999995 8899999999999996 78888764211 1122333333322 135666777
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
++....++.+ + .++|+||.+..... . .-..+-++|.+.+++ +|+.+.
T Consensus 196 ~i~~~~~~~~-~--~~~DlVvd~~Dn~~------~----------~r~~ln~~c~~~~~p-~i~~~~ 242 (353)
T 3h5n_A 196 NINDYTDLHK-V--PEADIWVVSADHPF------N----------LINWVNKYCVRANQP-YINAGY 242 (353)
T ss_dssp CCCSGGGGGG-S--CCCSEEEECCCCST------T----------HHHHHHHHHHHTTCC-EEEEEE
T ss_pred ccCchhhhhH-h--ccCCEEEEecCChH------H----------HHHHHHHHHHHhCCC-EEEEEE
Confidence 7766554555 6 78999998763210 0 122355788888874 776544
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.019 Score=53.21 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=67.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCC-------------------CCchhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR-------------------GNMGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|.| .|.+|.++++.|...|. ++++++...- +.....+.+.++.+. -.+..+..+
T Consensus 37 ~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~-v~v~~~~~~ 114 (346)
T 1y8q_A 37 SRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPM-VDVKVDTED 114 (346)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTT-SEEEEECSC
T ss_pred CeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCC-eEEEEEecc
Confidence 6999999 58999999999999996 7777753210 111122233333221 344555555
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
+.+ ...+++ .++|+||.+... ...-..+-+.|++.++ .+|..++.+.+|
T Consensus 115 ~~~--~~~~~~--~~~dvVv~~~d~-----------------~~~r~~ln~~~~~~~i-p~i~~~~~G~~G 163 (346)
T 1y8q_A 115 IEK--KPESFF--TQFDAVCLTCCS-----------------RDVIVKVDQICHKNSI-KFFTGDVFGYHG 163 (346)
T ss_dssp GGG--CCHHHH--TTCSEEEEESCC-----------------HHHHHHHHHHHHHTTC-EEEEEEEEBTEE
T ss_pred cCc--chHHHh--cCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEEeecccEE
Confidence 543 234556 689999977421 2233457778888886 688877766665
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=53.55 Aligned_cols=109 Identities=12% Similarity=-0.016 Sum_probs=58.5
Q ss_pred CCCCCCCCCcEEEEEcCCChhHH-HHHHHHHHC-CCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 41 AFPRHEPGVTHVLVTGGAGYIGS-HAALRLLKD-SYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 41 ~~~~~~~~~~~IlItGatG~iG~-~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
+.++..|+++||.|+| +|.+|. ++++.|.+. +.+|+++ ++. .....+..+.. ++..+ .++.
T Consensus 19 ~~~~~~m~~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~---~~~~~~~a~~~-----g~~~~-------~~~~ 82 (350)
T 3rc1_A 19 MENPANANPIRVGVIG-CADIAWRRALPALEAEPLTEVTAIASRR---WDRAKRFTERF-----GGEPV-------EGYP 82 (350)
T ss_dssp -------CCEEEEEES-CCHHHHHTHHHHHHHCTTEEEEEEEESS---HHHHHHHHHHH-----CSEEE-------ESHH
T ss_pred CCCCCCCCceEEEEEc-CcHHHHHHHHHHHHhCCCeEEEEEEcCC---HHHHHHHHHHc-----CCCCc-------CCHH
Confidence 3344556778999999 699998 788999887 6788765 332 12111111111 33332 2235
Q ss_pred HHHhhCCCcEEEEcccccCccCCccChHHHH------------HHHHHHHHHHHHHHHhcCCc
Q 016208 118 KIFAENAFDAVMHFAAVAYVGESTLEPLRYY------------HNITSNTLVILEAMAAHKVK 168 (393)
Q Consensus 118 ~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~------------~~n~~~~~~ll~~~~~~~~~ 168 (393)
++++..++|+|+-+...... ......+. ..+......+++++++.|+.
T Consensus 83 ~ll~~~~~D~V~i~tp~~~h---~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~ 142 (350)
T 3rc1_A 83 ALLERDDVDAVYVPLPAVLH---AEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLL 142 (350)
T ss_dssp HHHTCTTCSEEEECCCGGGH---HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred HHhcCCCCCEEEECCCcHHH---HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 55644578998866532110 00001111 14566677788888887763
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0072 Score=58.35 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
.+.+|+|+||+|-+|...++.+...|.+|+++++
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~ 261 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVS 261 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3479999999999999999999999999999875
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0035 Score=57.31 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNL 82 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~ 82 (393)
.+.||+|.|+| .|.+|..+++.|.+.|+ +|++.+|.
T Consensus 21 ~~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 21 QSNAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp ----CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred cCCCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 34578999999 69999999999999999 99998874
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.025 Score=51.12 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=56.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
.+|+|.|+||-.|+.+++.|.+.|++++.... +..... +. .++.+ ..++.++.++..+|+++
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~Vn-P~~~g~------~i----~G~~v-------y~sl~el~~~~~~Dv~i 75 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVT-PGKGGQ------NV----HGVPV-------FDTVKEAVKETDANASV 75 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCEEEEEC-TTCTTC------EE----TTEEE-------ESSHHHHHHHHCCCEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeC-CCCCCc------eE----CCEee-------eCCHHHHhhcCCCCEEE
Confidence 57899999999999999999999998443222 211100 00 12222 22334445323899998
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
.+... ..+..+++.|.+.|++.+|.+++
T Consensus 76 i~vp~------------------~~~~~~v~ea~~~Gi~~vVi~t~ 103 (294)
T 2yv1_A 76 IFVPA------------------PFAKDAVFEAIDAGIELIVVITE 103 (294)
T ss_dssp ECCCH------------------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred EccCH------------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 66532 23556788888899976776665
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0083 Score=55.12 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=46.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCcEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFDAVM 129 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi 129 (393)
+|||+||+|.+|...++.+...|.+|+++++..... +.++++ +...+ .|..+. .+..+.+...++|+||
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~----~~~~~l-----Ga~~~-i~~~~~~~~~~~~~~~~~~d~vi 221 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH----DYLRVL-----GAKEV-LAREDVMAERIRPLDKQRWAAAV 221 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH----HHHHHT-----TCSEE-EECC---------CCSCCEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHc-----CCcEE-EecCCcHHHHHHHhcCCcccEEE
Confidence 799999999999999999999999999998754322 222232 22211 233332 1211222224799999
Q ss_pred Ecccc
Q 016208 130 HFAAV 134 (393)
Q Consensus 130 ~~A~~ 134 (393)
+++|.
T Consensus 222 d~~g~ 226 (328)
T 1xa0_A 222 DPVGG 226 (328)
T ss_dssp ECSTT
T ss_pred ECCcH
Confidence 99874
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.035 Score=53.46 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC-C
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA-F 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-~ 125 (393)
..+++|+|+|. |-.|..+++.|.++|++|.+.++.........+.+++ .++.+..+.-.+ +.+ .+ +
T Consensus 7 ~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~-----~gi~~~~g~~~~-----~~~--~~~~ 73 (451)
T 3lk7_A 7 FENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE-----EGIKVVCGSHPL-----ELL--DEDF 73 (451)
T ss_dssp TTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH-----TTCEEEESCCCG-----GGG--GSCE
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh-----CCCEEEECCChH-----Hhh--cCCC
Confidence 45689999997 8899999999999999999998744222222233333 367777765322 123 34 8
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|.||...|+.
T Consensus 74 d~vv~spgi~ 83 (451)
T 3lk7_A 74 CYMIKNPGIP 83 (451)
T ss_dssp EEEEECTTSC
T ss_pred CEEEECCcCC
Confidence 9999988864
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.028 Score=54.35 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+.||+|.|+| .|.+|.+++..|.+.|++|++.+|..
T Consensus 2 ~~~~kIgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 2 NAQADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp -CCBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCCCEEEEEC-hhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3568999999 79999999999999999999998754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0069 Score=54.56 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=31.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
||+|.|+|+||.+|..+++.|.+.|++|++++|.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5799999988999999999999999999998764
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.018 Score=57.36 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=66.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCC-------------------chhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGN-------------------MGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|+|+ |.+|..+++.|...|. ++++++...-.. ..+.+.+.++.+ .-.+..+..+
T Consensus 18 s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP-~v~V~a~~~~ 95 (640)
T 1y8q_B 18 GRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYP-KANIVAYHDS 95 (640)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCT-TCEEEEEESC
T ss_pred CeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCC-CCeEEEEecc
Confidence 69999995 9999999999999996 788777532111 111222233221 1345566677
Q ss_pred CCCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceee
Q 016208 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATY 179 (393)
Q Consensus 110 l~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vy 179 (393)
+.......+++ .++|+||.+.. |+..-..+-+.|...+++ +|+.++.+.+
T Consensus 96 i~~~~~~~~~~--~~~DlVvda~D-----------------n~~aR~~ln~~c~~~~iP-lI~~g~~G~~ 145 (640)
T 1y8q_B 96 IMNPDYNVEFF--RQFILVMNALD-----------------NRAARNHVNRMCLAADVP-LIESGTAGYL 145 (640)
T ss_dssp TTSTTSCHHHH--TTCSEEEECCS-----------------CHHHHHHHHHHHHHHTCC-EEEEEEETTE
T ss_pred cchhhhhHhhh--cCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCC-EEEEEEeccc
Confidence 75432223556 78999998742 133344566778888874 7776654433
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.017 Score=53.81 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=49.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccE-EEEcc-C--CC-HHHHHHHH--hh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQ-FIYAD-L--GD-AKAVNKIF--AE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~D-l--~~-~~~~~~~~--~~ 122 (393)
.+|||+||+|.+|...++.+...|.+|+++.+.........+.++++ +.. ++..+ . .+ .+.+.++. ..
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~l-----Ga~~vi~~~~~~~~~~~~~i~~~t~~~~ 243 (364)
T 1gu7_A 169 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL-----GATQVITEDQNNSREFGPTIKEWIKQSG 243 (364)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH-----TCSEEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred cEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhc-----CCeEEEecCccchHHHHHHHHHHhhccC
Confidence 68999999999999999999999999998876433211112223333 222 22211 0 11 23344433 23
Q ss_pred CCCcEEEEcccc
Q 016208 123 NAFDAVMHFAAV 134 (393)
Q Consensus 123 ~~~d~Vi~~A~~ 134 (393)
.++|+||+++|.
T Consensus 244 ~g~Dvvid~~G~ 255 (364)
T 1gu7_A 244 GEAKLALNCVGG 255 (364)
T ss_dssp CCEEEEEESSCH
T ss_pred CCceEEEECCCc
Confidence 589999999873
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0057 Score=56.89 Aligned_cols=34 Identities=24% Similarity=0.031 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.+|+|+|+| .|.+|..++..|.+.|++|++++|.
T Consensus 3 ~~mki~iiG-~G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 3 ESKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CcCeEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 347999999 5999999999999999999998774
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.089 Score=50.14 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
+...+|.+|.|+| .|++|..++..|.+.|++|++++..
T Consensus 16 p~~~~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did 53 (444)
T 3vtf_A 16 PRGSHMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVN 53 (444)
T ss_dssp CTTCCCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCCCCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 3456788999998 8999999999999999999998763
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.03 Score=50.64 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=55.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC-CcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA-FDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-~d~V 128 (393)
.+|+|.|+||-.|+.+++.|++.|++++.... +...... . .++.+ ..++.++.++.+ +|++
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~Vn-P~~~g~~------i----~G~~v-------y~sl~el~~~~~~~Dva 75 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVT-PGKGGSE------V----HGVPV-------YDSVKEALAEHPEINTS 75 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC-TTCTTCE------E----TTEEE-------ESSHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeC-CCCCCce------E----CCEee-------eCCHHHHhhcCCCCCEE
Confidence 57888899999999999999999998443222 2110000 0 12222 222344443235 9999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|.+.... .+..+++.|.+.|++.+|.+++
T Consensus 76 Ii~vp~~------------------~~~~~v~ea~~~Gi~~vVi~t~ 104 (297)
T 2yv2_A 76 IVFVPAP------------------FAPDAVYEAVDAGIRLVVVITE 104 (297)
T ss_dssp EECCCGG------------------GHHHHHHHHHHTTCSEEEECCC
T ss_pred EEecCHH------------------HHHHHHHHHHHCCCCEEEEECC
Confidence 8765321 2456788888899976776665
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=52.00 Aligned_cols=73 Identities=11% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++++|+|+ |.+|++++..|.+.|. +|++++|...+.....+.+... ..+.....+ + +. .++|
T Consensus 125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~----~~~~~~~~~--~------l~--~~aD 189 (281)
T 3o8q_A 125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY----GEVKAQAFE--Q------LK--QSYD 189 (281)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG----SCEEEEEGG--G------CC--SCEE
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc----CCeeEeeHH--H------hc--CCCC
Confidence 4489999996 8899999999999996 9999988543333333332221 123443321 1 11 5799
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+||++....
T Consensus 190 iIInaTp~g 198 (281)
T 3o8q_A 190 VIINSTSAS 198 (281)
T ss_dssp EEEECSCCC
T ss_pred EEEEcCcCC
Confidence 999988654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0055 Score=58.83 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=29.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|+|.|+| +|++|..++..|.+.|++|++++|.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~ 32 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999 7999999999999999999999874
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0097 Score=54.79 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=54.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC-CCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|||.|.||+|.+|+.|++.|.++++++..+... +..... ..+. + ....+.+...| ++ . + ++|+|
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g--~~l~-~--~g~~i~v~~~~---~~---~-~---~~DvV 65 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAG--VRLA-F--RGEEIPVEPLP---EG---P-L---PVDLV 65 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSS--CEEE-E--TTEEEEEEECC---SS---C-C---CCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCC--CEEE-E--cCceEEEEeCC---hh---h-c---CCCEE
Confidence 579999999999999999999887754432211 110000 0000 0 00122333333 21 1 2 78999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecce
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCA 177 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~ 177 (393)
|.+.+.. .+........+.|+ ++|-.|+..
T Consensus 66 ~~a~g~~------------------~s~~~a~~~~~~G~-~vId~s~~~ 95 (331)
T 2yv3_A 66 LASAGGG------------------ISRAKALVWAEGGA-LVVDNSSAW 95 (331)
T ss_dssp EECSHHH------------------HHHHHHHHHHHTTC-EEEECSSSS
T ss_pred EECCCcc------------------chHHHHHHHHHCCC-EEEECCCcc
Confidence 9988742 13345555566787 688888864
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.017 Score=55.46 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=52.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc------cCCCHHHHHHH
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA------DLGDAKAVNKI 119 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------Dl~~~~~~~~~ 119 (393)
+|.|++|||+| .|.+|..+++.+.+.|++|++++..........+. ..-.+..+ +..|.+.+.++
T Consensus 3 ~m~~~kiLI~g-~g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~--------ad~~~~i~~~~~~~~~~d~~~l~~~ 73 (446)
T 3ouz_A 3 AMEIKSILIAN-RGEIALRALRTIKEMGKKAICVYSEADKDALYLKY--------ADASICIGKARSSESYLNIPAIIAA 73 (446)
T ss_dssp TTCCCEEEECC-CHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHH--------SSEEEEEECCTTTTGGGCHHHHHHH
T ss_pred ccccceEEEEC-CCHHHHHHHHHHHHcCCEEEEEEcCcccccchHhh--------CCEEEEcCCCCccccccCHHHHHHH
Confidence 34578999999 68899999999999999999886422111111110 11122222 66788899998
Q ss_pred HhhCCCcEEEEc
Q 016208 120 FAENAFDAVMHF 131 (393)
Q Consensus 120 ~~~~~~d~Vi~~ 131 (393)
+++.++|+|+-.
T Consensus 74 ~~~~~~d~i~p~ 85 (446)
T 3ouz_A 74 AEIAEADAIFPG 85 (446)
T ss_dssp HHHHTCSEEECC
T ss_pred HHHhCcCEEEEC
Confidence 887899988754
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0028 Score=59.08 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
+.+|+|.|+| +|.+|.+++..|.+.|++|++++|.
T Consensus 27 ~~~mkI~VIG-aG~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 27 PFKHPIAILG-AGSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCCSCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred ccCCeEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3457999999 5999999999999999999999874
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.005 Score=55.50 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=30.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|.|+| .|.+|..+++.|.+.|++|++.+|..
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 7899999 69999999999999999999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0074 Score=55.99 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=48.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~ 124 (393)
+.+|||+|+ |.+|..+++.+...|. +|++++++.. ..+.+.++ +...+ .|..+. +.+.++....+
T Consensus 168 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~----~~~~~~~~-----Ga~~~-~~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 168 GKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDF----RRELAKKV-----GADYV-INPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH----HHHHHHHH-----TCSEE-ECTTTSCHHHHHHHHTTTSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHh-----CCCEE-ECCCCcCHHHHHHHHcCCCC
Confidence 468999999 9999999999999999 9999876422 22223332 22211 233322 23444332347
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||++++.
T Consensus 237 ~D~vid~~g~ 246 (348)
T 2d8a_A 237 VDVFLEFSGA 246 (348)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0075 Score=57.23 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..+++|+|+|+ |.+|..+++.|...|. +|++++|...... +...++ +... .+. +++.+.+ .++
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~---~la~~~-----g~~~--~~~---~~l~~~l--~~a 228 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV---ELARDL-----GGEA--VRF---DELVDHL--ARS 228 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH---HHHHHH-----TCEE--CCG---GGHHHHH--HTC
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHH---HHHHHc-----CCce--ecH---HhHHHHh--cCC
Confidence 35689999996 9999999999999998 8999877432211 111121 2222 122 3455666 589
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|+||.+.+..
T Consensus 229 DvVi~at~~~ 238 (404)
T 1gpj_A 229 DVVVSATAAP 238 (404)
T ss_dssp SEEEECCSSS
T ss_pred CEEEEccCCC
Confidence 9999997643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.027 Score=52.27 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=50.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEcc--CCCHHHHHHHHh---hC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD--LGDAKAVNKIFA---EN 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D--l~~~~~~~~~~~---~~ 123 (393)
+.+|||+|+ |.+|...++.+...|.+|++++++.. ..+.++++. .. ..+..+ -...+.+.+... ..
T Consensus 169 g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lG---a~-~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 169 GTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPR----RLEVAKNCG---AD-VTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTT---CS-EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHhC---CC-EEEcCcccccHHHHHHHHhccccCC
Confidence 469999996 99999999999999999988876332 222233321 11 222211 223455655553 35
Q ss_pred CCcEEEEcccc
Q 016208 124 AFDAVMHFAAV 134 (393)
Q Consensus 124 ~~d~Vi~~A~~ 134 (393)
++|+||++++.
T Consensus 240 g~D~vid~~g~ 250 (352)
T 1e3j_A 240 LPNVTIDCSGN 250 (352)
T ss_dssp CCSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.05 Score=50.82 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d 126 (393)
.+.+|||+||+|.+|...++.+...|.+|+++.+ . ...+.++++ +--.++...-.+. +.+.++.. .++|
T Consensus 164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~-~----~~~~~~~~l----Ga~~vi~~~~~~~~~~v~~~t~-g~~d 233 (371)
T 3gqv_A 164 KPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS-P----HNFDLAKSR----GAEEVFDYRAPNLAQTIRTYTK-NNLR 233 (371)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC-G----GGHHHHHHT----TCSEEEETTSTTHHHHHHHHTT-TCCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC-H----HHHHHHHHc----CCcEEEECCCchHHHHHHHHcc-CCcc
Confidence 4579999999999999999999999999998752 1 122333333 1112232221222 33444332 3699
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||+++|.
T Consensus 234 ~v~d~~g~ 241 (371)
T 3gqv_A 234 YALDCITN 241 (371)
T ss_dssp EEEESSCS
T ss_pred EEEECCCc
Confidence 99999874
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=54.91 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.||+|.|+| .|.+|..+++.|.+.|++|.+++|.
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~ 35 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPHELIISGSS 35 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCC
Confidence 458999999 7999999999999999999988764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.067 Score=51.67 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC-CC-eEEEEeCCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD-SY-RVTIVDNLSR 84 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~ 84 (393)
+.+|+|.|+| .|++|..++..|.+. |+ +|+++++...
T Consensus 16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 3458999999 799999999999999 99 9999998655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 393 | ||||
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-76 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-73 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-70 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-70 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 9e-69 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 7e-65 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 8e-63 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 1e-60 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 7e-59 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 3e-57 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 1e-55 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 1e-54 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-54 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 1e-51 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 8e-47 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 3e-44 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 3e-27 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 5e-27 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-23 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 6e-22 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 6e-19 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 1e-18 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 4e-18 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-15 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 9e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 7e-14 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-13 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 4e-10 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 2e-07 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 3e-07 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 5e-07 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 6e-07 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 8e-07 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 8e-07 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 9e-07 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 1e-06 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 1e-06 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 1e-06 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 1e-06 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-06 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 2e-06 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-06 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 3e-06 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 3e-06 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 3e-06 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 3e-06 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 3e-06 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 4e-06 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 4e-06 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 4e-06 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 4e-06 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-06 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 5e-06 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 6e-06 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 6e-06 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 6e-06 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 6e-06 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 7e-06 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 1e-05 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 1e-05 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 1e-05 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-05 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 2e-05 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 3e-05 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 3e-05 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 6e-05 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 1e-04 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 1e-04 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-04 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 1e-04 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-04 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 6e-04 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 6e-04 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 8e-04 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 0.001 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 0.004 |
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 237 bits (606), Expect = 2e-76
Identities = 133/341 (39%), Positives = 178/341 (52%), Gaps = 9/341 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITEST-PQKPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS+ YG+ K+P ES P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+G+ P G +GE P + A G L I G DY T DGT VRDYI V
Sbjct: 181 VGAHPSGDMGEDPQGIPN---NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237
Query: 290 DLVDAHV-LALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYA 348
DL D HV A V IYN+G G G SV + V A KA G + + RR GD
Sbjct: 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 349 EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYG 389
++D SK ELNW L Q W WQ H GY
Sbjct: 298 AYWADASKADRELNWRVT-RTLDEMAQDTWHWQSRHPQGYP 337
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 229 bits (585), Expect = 2e-73
Identities = 78/339 (23%), Positives = 137/339 (40%), Gaps = 39/339 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGGAG++GSH +L+ D + VT+VDN G V+ + +L
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---------IGHENFELI 54
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ V ++ E D + H A+ A P++ T TL +L + L+
Sbjct: 55 NHDVVEPLYIE--VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR-LL 111
Query: 172 YSSTCATYGEPDKMPITES-----TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
+ST YG+P+ P +E P P Y + K+++E + + K + V + R
Sbjct: 112 LASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARI 171
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
FN G P + + +S A +G L + G G+ R +
Sbjct: 172 FNTFG----------PRMHMNDGRVVSNFILQALQGEP--LTVYG------SGSQTRAFQ 213
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGD 346
V+DLV+ V + + N+G + ++ EF + K G ++++LS D
Sbjct: 214 YVSDLVNGLVALMNSNVS---SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDD 270
Query: 347 YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+ D K + L W L+ L A + + +
Sbjct: 271 PQKRKPDIKKAKLMLGWEPV-VPLEEGLNKAIHYFRKEL 308
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 223 bits (569), Expect = 2e-70
Identities = 81/365 (22%), Positives = 137/365 (37%), Gaps = 54/365 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+L+TGGAG+IGS ++K++ + +D L+ G ++ L ++ F +AD+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA--GNLESLSDISESNR-YNFEHADI 59
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT- 169
D+ + +IF + DAVMH AA ++V S P + T +LE +
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 170 --------LIYSSTCATYGEPDKMPI----------TESTPQKPINPYGKAKKMSEDIII 211
+ ST YG+ TE+T P +PY +K S+ ++
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 212 DFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271
+ +T + ++ N G P I +A G L I G
Sbjct: 180 AWRRTYGLPTIVTNCSNNYG------------PYHFPEKLIPLVILNALEGKP--LPIYG 225
Query: 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEA----- 326
G +RD++ V D A + + K G+ YN+G + + V
Sbjct: 226 ------KGDQIRDWLYVEDHARALHMVVTEGKAGE--TYNIGGHNEKKNLDVVFTICDLL 277
Query: 327 ---CKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383
KAT ++ Y++ RPG D KI EL W + ++ W
Sbjct: 278 DEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL-ETFESGIRKTVEWYLA 336
Query: 384 HINGY 388
+
Sbjct: 337 NTQWV 341
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 222 bits (566), Expect = 3e-70
Identities = 130/348 (37%), Positives = 180/348 (51%), Gaps = 17/348 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGAGYIGSH + L+++ Y + DNLS +V L+ L + F DL
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL--TKHHIPFYEVDLC 61
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D K + K+F E D+V+HFA + VGEST PLRYYHN T+V+LE M + V +
Sbjct: 62 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 121
Query: 172 YSSTCATYGE----PDKMPITESTPQKPINPYGKAKKMSEDIIIDF--SKTTNMAVMILR 225
+SS+ YG+ P+ +PI E P P NPYG K E+I+ D S + ILR
Sbjct: 122 FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 181
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
YFN IG+ P G +GE P + A G L I G DY++ DGT +RDY
Sbjct: 182 YFNPIGAHPSGLIGEDPL---GIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDY 238
Query: 286 IDVTDLVDAHVLALANA-----KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL 340
I V DL H+ AL G +N+G+GKG +V E A KA+G+++ +
Sbjct: 239 IHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVT 298
Query: 341 SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
RR GD + + P + + EL W ++ S + W+W + GY
Sbjct: 299 GRRAGDVLNLTAKPDRAKRELKWQTE-LQVEDSCKDLWKWTTENPFGY 345
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 218 bits (557), Expect = 9e-69
Identities = 79/353 (22%), Positives = 129/353 (36%), Gaps = 55/353 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNMGAVKVL-QELFPQPGQLQFIYAD 109
L+TG G GS+ A LL+ Y V + S N V + Q+ + Y D
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGD 63
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L D + +I E D V + A+++V S P TL +LEA+ ++
Sbjct: 64 LSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 170 ---LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
+ST YG ++P E+TP P +PY AK + I +++ ++ M
Sbjct: 124 KTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGIL 183
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
FN P +I+ A + A+G+ L + + +RD+
Sbjct: 184 FNHES--PRRGETFVTR-------KITRAIANIAQGLESCLYLG-------NMDSLRDWG 227
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN------------ 334
D V + L +P + + TG SV++FVE G+
Sbjct: 228 HAKDYVKMQWMMLQQEQP---EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKG 284
Query: 335 -------------------IKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
I V+ RP + + DP+K ++L W T
Sbjct: 285 IVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEIT 337
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 207 bits (528), Expect = 7e-65
Identities = 87/344 (25%), Positives = 140/344 (40%), Gaps = 35/344 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLSRGNMGAVKVLQELFPQPGQLQF 105
+LVTGGAG+IGSH +LL +Y V ++D+L+ G L + P +L+F
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA--GNRANLAPVDADP-RLRF 59
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
++ D+ DA DA++HFAA ++V S + T +L+
Sbjct: 60 VHGDIRDAG--LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA 117
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
V +++ ST YG D TES+P +P +PY +K S+ + + +T + V I R
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITR 177
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
N G P I + G L + G DG VR++
Sbjct: 178 CCNNYG------------PYQHPEKLIPLFVTNLLDGGT--LPLYG------DGANVREW 217
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRP 344
+ D L LA + G+ IY++G G + +E + G + V ++ R
Sbjct: 218 VHTDDHCRGIALVLAGGRAGE--IYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRK 275
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
G D KI EL + + L RW + + +
Sbjct: 276 GHDLRYSLDGGKIERELGYRPQ-VSFADGLARTVRWYRENRGWW 318
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 203 bits (516), Expect = 8e-63
Identities = 133/346 (38%), Positives = 188/346 (54%), Gaps = 11/346 (3%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP----QPGQLQFIY 107
VLVTGGAGYIGSH L LL+ Y ++DN G + + L ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
D+ D A+ ++F + +F AV+HFA + VGES +PL YY + T+ +LE M AH V
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 168 KTLIYSSTCATYGEPDKMPITESTPQKP-INPYGKAKKMSEDIIIDFSKT-TNMAVMILR 225
K L++SS+ YG P +P+ E+ P NPYGK+K E++I D + ++LR
Sbjct: 125 KNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLR 184
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
YFN G+ G +GE P + A G L + G DY+T DGT VRDY
Sbjct: 185 YFNPTGAHASGCIGEDPQGIPN---NLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 286 IDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
I V DL H+ AL + IYN+GTG G SV + V+A +KA+G I + ++RR
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARRE 301
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390
GD A Y++PS ++EL WTA L + WRWQK + +G+G+
Sbjct: 302 GDVAACYANPSLAQEELGWTAA-LGLDRMCEDLWRWQKQNPSGFGT 346
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 197 bits (501), Expect = 1e-60
Identities = 81/334 (24%), Positives = 136/334 (40%), Gaps = 22/334 (6%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
L+TG AG+IGS+ LLK +V +DN + G+ + ++ L + F +
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 78
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ A D V+H AA+ V S +P+ L +L A KV++
Sbjct: 79 IRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFT 138
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
Y+++ +TYG+ +P E T KP++PY K ++E FS+ + + LRYFNV
Sbjct: 139 YAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVF- 197
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+G + +I G + Y DG RD+ + +
Sbjct: 198 -----------GRRQDPNGAYAAVIPKWTSSMIQGDDV----YINGDGETSRDFCYIENT 242
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-----IKVEYLSRRPGD 346
V A++LA + +YN+ G S+ + A + N + Y R GD
Sbjct: 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD 302
Query: 347 YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+D SK L + + D+ + +A W
Sbjct: 303 VRHSLADISKAAKLLGYAPK-YDVSAGVALAMPW 335
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 194 bits (492), Expect = 7e-59
Identities = 121/378 (32%), Positives = 181/378 (47%), Gaps = 41/378 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKV--------------LQEL 96
VLV GGAGYIGSH LL+D+ + V IVD+L + + V +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 97 FPQPGQLQFIYADLGDAKAVNKIFAENA-FDAVMHFAAVAYVGESTLEPLRYYHNITSNT 155
D+ + +N +F + DAV+H A VGES +PL+YY N
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 156 LVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQ-------KPINPYGKAKKMSED 208
L +L+AM HK +I+SS+ A +G P ++ + P +PYG++K ++E
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG-- 266
+I D ++ + + LRYFN G+ +G +GE I G
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTI 244
Query: 267 ---------LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-------GKVGIY 310
+ I GTDY T DGTCVRDY+ V DL AH+LAL + ++
Sbjct: 245 HEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVF 304
Query: 311 NVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDL 370
N+GT +G SV+E +E +K TG I V RR GD A + + K R+ L W ++ L
Sbjct: 305 NLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTL 364
Query: 371 QGSLQIAWRWQKTHINGY 388
+ ++ +W++Q+TH NGY
Sbjct: 365 EAIMETSWKFQRTHPNGY 382
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 187 bits (476), Expect = 3e-57
Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 49/346 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V + G G +GS +L + ++ +L
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-----------------------NLL 41
Query: 112 DAKAVNKIFAENAFDAVMHFA-AVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D++AV+ FA D V A V + + P + + I+ A + V L
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL 101
Query: 171 IYSSTCATYGEPDKMPITES-----TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
++ + Y + K P+ ES T + PY AK + +++ +
Sbjct: 102 LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVM 161
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
N+ G + A ++ G GT +R++
Sbjct: 162 PTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWG-----------SGTPMREF 210
Query: 286 IDVTDLVDAHVLALANAK-------PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE 338
+ V D+ A + + A + NVGTG +++E + K G +V
Sbjct: 211 LHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVV 270
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
+ + +P D +++ +L W L+ L ++W +
Sbjct: 271 FDASKPDGTPRKLLDVTRLH-QLGWYHE-ISLEAGLASTYQWFLEN 314
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (467), Expect = 1e-55
Identities = 76/344 (22%), Positives = 131/344 (38%), Gaps = 46/344 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNMGAVKVLQEL--FPQPGQLQFIYA 108
L+TG G GS+ A LL+ Y V + S N G ++ L + G ++ Y
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV- 167
DL D+ + KI E + + A ++V S TL +L+A+ +
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 168 --KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
+ST YG+ ++P E+TP P +PYG AK + I+++F + N+ +
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGI 183
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
FN + +R + + ++ + RD+
Sbjct: 184 LFNHES----------------PRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDW 227
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVK---------------------EFV 324
D V+A L L N +P + + TG+ SV+ V
Sbjct: 228 GHAKDYVEAMWLMLQNDEP---EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEV 284
Query: 325 EACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
CK+ V++ V+ RP + + D +K + +LNW R
Sbjct: 285 GRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVA 328
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 181 bits (460), Expect = 1e-54
Identities = 73/351 (20%), Positives = 138/351 (39%), Gaps = 35/351 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGG G++GS+ A L + + DNLSR GA L L +F++ D+
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK--GATDNLHWLSSLGN-FEFVHGDIR 59
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-L 170
+ V ++ + D+ H A + S P + TL +LEA+ + +
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 171 IYSSTCATYGEPDKMP----------------ITESTPQKPINPYGKAKKMSEDIIIDFS 214
IYSST YG+ ++ EST +PYG +K ++ ++D++
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 215 KTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274
+ + ++ R+ ++ G + + + GI I G
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQK------AVEIKNGINKPFTISG--- 230
Query: 275 NTADGTCVRDYIDVTDLVDAHVLALANAK--PGKVGIYNVGTGKGRSVKEFVEACKKATG 332
+G VRD + D++ + ALAN G S+ E + +
Sbjct: 231 ---NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCN 287
Query: 333 VNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383
++++ L R D +D KI + ++W+ + + +Q + W +
Sbjct: 288 IDMRFTNLPVRESDQRVFVADIKKITNAIDWSPK-VSAKDGVQKMYDWTSS 337
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 181 bits (460), Expect = 2e-54
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 44/353 (12%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
+++VTGGAG+IGS+ + + VT++D L+ G L+ + +++ +
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA--GNKANLEAILGD--RVELVVG 59
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ DA+ V+K+ A+ +H+AA ++ S +P + H T +LEA + ++
Sbjct: 60 DIADAELVDKLAAKADAI--VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 117
Query: 169 TLIYSSTCATYGE------------PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT 216
+ ST YG+ T T P +PY K S+ I+ + ++
Sbjct: 118 F-HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 176
Query: 217 TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT 276
+ I N G P I + GI P L
Sbjct: 177 FGVKATISNCSNNYG------------PYQHIEKFIPRQITNILAGIKPKL--------Y 216
Query: 277 ADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-I 335
+G VRD+I D L + G+ + ++ KE +E + G
Sbjct: 217 GEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIG--ADGEKNNKEVLELILEKMGQPKD 274
Query: 336 KVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
++++ R G D SK+RDEL WT +FTD L+ +W + + +
Sbjct: 275 AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWW 327
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 174 bits (441), Expect = 1e-51
Identities = 59/348 (16%), Positives = 120/348 (34%), Gaps = 37/348 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + V D + + +F DL
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH---------MTEDMFCDEFHLVDLR 68
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ K+ + + + Y+N + ++EA + +K
Sbjct: 69 VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTM-ISFNMIEAARINGIKRFF 127
Query: 172 YSSTCATYGEPDKMPIT-------ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
Y+S+ Y E ++ T ++ P +P + +G K +E++ ++K + I
Sbjct: 128 YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIG 187
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
R+ N+ G + G P + G DG R
Sbjct: 188 RFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWG---------------DGLQTRS 232
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
+ + + V+ + + N+G+ + S+ E E + + ++
Sbjct: 233 FTFIDECVEGVLRLTKSDFR---EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE 289
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSRN 392
G SD + I+++L W L+ L+I + W K I ++
Sbjct: 290 GVRG-RNSDNNLIKEKLGWAPN-MRLKEGLRITYFWIKEQIEKEKAKG 335
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 160 bits (406), Expect = 8e-47
Identities = 74/335 (22%), Positives = 130/335 (38%), Gaps = 30/335 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNMGAVKVLQELFPQPGQLQFIYADL 110
LVTG G G++ A LL+ YRV + S ++ L G +Q+ D+
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG----IEGDIQYEDGDM 58
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
DA +V + + V + AA ++VG S +P+ +LEA+ +T
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 171 IY-SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y +ST +G E+TP P +PYG AK I +++ ++ + FN
Sbjct: 119 FYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNH 178
Query: 230 IGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289
+++ A G L++ + RD+
Sbjct: 179 ESPLRGIEF---------VTRKVTDAVARIKLGKQQELRLG-------NVDAKRDWGFAG 222
Query: 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN----IKVEYLSRRPG 345
D V+A L L K Y V TG +V++ + + G++ +K++ RP
Sbjct: 223 DYVEAMWLMLQQ---DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPA 279
Query: 346 DYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+ + +P+K + L W R T L +++
Sbjct: 280 EVDVLLGNPAKAQRVLGWKPR-TSLDELIRMMVEA 313
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 154 bits (389), Expect = 3e-44
Identities = 66/352 (18%), Positives = 117/352 (33%), Gaps = 31/352 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL-SRGNMGAVKVLQEL--FPQPGQLQFIYA 108
L+TG G GS+ LL Y V + S N + + ++ YA
Sbjct: 4 ALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 63
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM----AA 164
DL DA ++ + D V + AA ++V S P + + L +LEA+
Sbjct: 64 DLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTID 123
Query: 165 HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
Y + + P +E+TP P +PY +K + +++ + +
Sbjct: 124 SGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNG 183
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
FN P I+ A G+ L + + RD
Sbjct: 184 ILFNHES--PRRGENFVTRK-------ITRALGRIKVGLQTKLFLG-------NLQASRD 227
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVN-IKVEYLSRR 343
+ D V+A L L KP + + + ++++ R
Sbjct: 228 WGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFR 287
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQG-------SLQIAWRWQKTHINGY 388
P + + D SK ++ L W + + L++A R + GY
Sbjct: 288 PAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGY 339
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 108 bits (270), Expect = 3e-27
Identities = 59/345 (17%), Positives = 101/345 (29%), Gaps = 16/345 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V VTG G+ G +L L V + L E +Q D+
Sbjct: 11 VFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV----PSLFETARVADGMQSEIGDIR 66
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + + E + V H AA V S EP+ Y T+ +LEA+ +
Sbjct: 67 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 126
Query: 172 YSSTCATYGE--PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYF-N 228
+ T + E+ +PY +K +E + + + ++
Sbjct: 127 VNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTA 186
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
V +G RI A P + +
Sbjct: 187 VATVRAGNVIGGGDWAL----DRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYL 242
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY-LSRRPGDY 347
+ A+ + + VK VE K G + + P +
Sbjct: 243 LLAQKLYT---DGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEA 299
Query: 348 AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSRN 392
+ D SK + +L W R +L +L+ W K ++G
Sbjct: 300 HYLKLDCSKAKMQLGWHPR-WNLNTTLEYIVGWHKNWLSGTDMHE 343
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 108 bits (270), Expect = 5e-27
Identities = 70/372 (18%), Positives = 113/372 (30%), Gaps = 43/372 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG---------- 101
V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 102 ----QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN--- 154
++ D+ D + + + F D+V+HF S ++ R + +N
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 155 TLVILEAMAAHKVKTLIYSSTCATYGEPDKMPI--------------TESTPQKPINPYG 200
TL +L A+ + + + I T P++ + Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183
Query: 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPE-GRLGEAPHPELREHGRISGACFDA 259
+K I K + L V G + + E L A
Sbjct: 184 LSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRF 243
Query: 260 ARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRS 319
G + R Y+D+ D V +A+AN + S
Sbjct: 244 CVQAAVGHPLTVYGKG----GQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFS 299
Query: 320 VKEFVEACKKA---TGVNIKVEYL--SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSL 374
V E KA G+++K + R + + +K+ EL L
Sbjct: 300 VNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPH-YLSDSLL 357
Query: 375 QIAWRWQKTHIN 386
+ +
Sbjct: 358 DSLLNFAVQFKD 369
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 97.6 bits (241), Expect = 3e-23
Identities = 49/344 (14%), Positives = 91/344 (26%), Gaps = 45/344 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTG G++ SH +LL+ Y+V S + ++ + + D+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPGRFETAVVEDML 72
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
A +++ A A + V S I + A A VK +
Sbjct: 73 KQGAYDEVIKGAAGVAHIAS----VVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFV 128
Query: 172 YSSTCATYGEPDK--------------------MPITESTPQKPINPYGKAKKMSEDIII 211
+S+ + P + ES PQK + Y +K +E
Sbjct: 129 LTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAW 188
Query: 212 DFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271
F + +G PE + G
Sbjct: 189 KFMDENKPHFTLNAVLPNY------TIGTIFDPETQSGSTSGWMMS----------LFNG 232
Query: 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKAT 331
+ Y+ D+ H+ P GT + +K
Sbjct: 233 EVSPALALMPPQYYVSAVDIGLLHL--GCLVLPQIERRRVYGTAGTFDWNTVLATFRKLY 290
Query: 332 -GVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSL 374
++ + + +I L + ++ S+
Sbjct: 291 PSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPG-WRSIEESI 333
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 93.5 bits (230), Expect = 6e-22
Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 46/359 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+ G G+IG+H RLL++ Y V +D S + P F+ D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-------ISRFLNHPH-FHFVEGDI 54
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ + D V+ A+A E T PLR + L I+ ++ + +
Sbjct: 55 SIHSEWIEYHVKK-CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 113
Query: 171 IYSSTCATYGEPDKMPITESTPQ------KPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
S++ DK + + KP Y +K++ + +I + + + +
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 173
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
R FN +G S A ++ G G R
Sbjct: 174 RPFNWMGPR--------LDNLNAARIGSSRAITQLILNLVEGSP----IKLIDGGKQKRC 221
Query: 285 YIDVTDLVDAHVLALANAKPGKVG-IYNVGTGKGRS-VKEFVEACKKATGVNIKVEYLS- 341
+ D+ D ++A + NA G I N+G + + ++E E + + +
Sbjct: 222 FTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPP 281
Query: 342 --------------RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386
+ D L+W + D+Q ++ + ++
Sbjct: 282 FAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPK-IDMQETIDETLDFFLRTVD 339
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 84.4 bits (207), Expect = 6e-19
Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 46/290 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+ GG GYIG + + ++ + + F Q G + I A L
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLG-AKLIEASLD 64
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + + + V S L H+I ++ A +K +
Sbjct: 65 DHQRLVDALKQV------------DVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 112
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
S + G + + + + ++ + G
Sbjct: 113 PSEFGMDPDIMEHAL-----------QPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAG 161
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
A+ + R DG ++D D+
Sbjct: 162 YFAGS----------------------LAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDV 199
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
+ ++ + + +Y S KE ++ ++ + N+ Y+S
Sbjct: 200 GTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (204), Expect = 1e-18
Identities = 64/330 (19%), Positives = 108/330 (32%), Gaps = 27/330 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGS+ L + +VDNL G L +L I +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNLVDLN--------IADYM 51
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ +I A F V +T +Y + L +
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+Y+S+ ATYG I +KP+N YG +K + ++ + N ++ RYFNV
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTD 290
G + A +G G RD++ V D
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN---------------FKRDFVYVGD 216
Query: 291 LVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEV 350
+ D ++ L N G + ++V + A K + + A
Sbjct: 217 VADVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT 276
Query: 351 YSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+D + +R F + + W
Sbjct: 277 QADLTNLRAAGYDKP-FKTVAEGVTEYMAW 305
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 82.1 bits (201), Expect = 4e-18
Identities = 33/290 (11%), Positives = 77/290 (26%), Gaps = 51/290 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+ G GYIG H A L + ++ S + + K + ++ +
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D ++ + D V+ + + I++A+
Sbjct: 66 DHASLVEAVKN--VDVVIST---------------VGSLQIESQVNIIKAIKEVGTVKRF 108
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+ S + K+ + + + + + G
Sbjct: 109 FPSEFGNDVDNVHAV-----------EPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAG 157
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
LR + + +I G DG ++ D+
Sbjct: 158 ------------YFLRSLAQAGLTAPPRDKVVILG-----------DGNARVVFVKEEDI 194
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341
+ A+ + + +Y S+ E V +K ++ Y+
Sbjct: 195 GTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 74.1 bits (180), Expect = 2e-15
Identities = 54/332 (16%), Positives = 93/332 (28%), Gaps = 70/332 (21%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TG G +G +L + V D D+
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTD------------------------VQDLDIT 39
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ AVNK F E + V++ AA V + + Y + A + + +
Sbjct: 40 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQ 99
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
S+ K PITE P + YGK K E +F K N I+R + G
Sbjct: 100 ISTDYVFD-GEAKEPITEFDEVNPQSAYGKTKLEGE----NFVKALNPKYYIVRTAWLYG 154
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+ + ++ V DL
Sbjct: 155 DGNNFVKTMINLGKTHDELKV-------------------------VHDQVGTPTSTVDL 189
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS--------RR 343
+ G ++ S +F + TG+++KV + +R
Sbjct: 190 ARVVL---KVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKR 246
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQ 375
P + R + + SL+
Sbjct: 247 PKYSV---LRNYMLELTTGDITR--EWKESLK 273
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 71.4 bits (173), Expect = 9e-15
Identities = 33/288 (11%), Positives = 70/288 (24%), Gaps = 50/288 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTG +G G +L + S + + G+ D+
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--------GKEKIGGEADVFIGDIT 57
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK--VKT 169
DA + A DA++ + + +P +
Sbjct: 58 DAD--SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQ 115
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI-LRYFN 228
+ + + + P P+N G + + + +R
Sbjct: 116 IDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGG 175
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
++ + R L + D +
Sbjct: 176 LLDKEGGVR----------------------------ELLVGKDDELLQTD---TKTVPR 204
Query: 289 TDLVDAHVLALANAKPGKVG-IYNVGT---GKGRSVKEFVEACKKATG 332
D+ + + AL +++G+ G K+F + T
Sbjct: 205 ADVAEVCIQALLF--EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 69.6 bits (168), Expect = 7e-14
Identities = 52/329 (15%), Positives = 97/329 (29%), Gaps = 65/329 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+ G G +G R L + +D S+ D
Sbjct: 3 ILLFGKTGQVGWELQ-RSLAPVGNLIALDVHSK--------------------EFCGDFS 41
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ K V + + D +++ AA V ++ EP ++ I +A +
Sbjct: 42 NPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVH 101
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
YS+ G +P E+ P+N YGK K E + D + Y
Sbjct: 102 YSTDYVFPG-TGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVY----- 155
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
G+ + R + + T D T
Sbjct: 156 -----------------AGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCT-- 196
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACK---KATGVNIKVEYL-------- 340
AH + +A KP G+Y++ G + ++ + G+ + + L
Sbjct: 197 --AHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAY 254
Query: 341 ---SRRPGDYAEVYSDPSKIRDELNWTAR 366
+ RPG+ + K + +
Sbjct: 255 PTPASRPGNSR---LNTEKFQRNFDLILP 280
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 68.1 bits (165), Expect = 3e-13
Identities = 33/318 (10%), Positives = 72/318 (22%), Gaps = 57/318 (17%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ V G G G+ + V G + +EL P + L
Sbjct: 6 IAVVGATGRQGASLIRVAAAVGHHVRA---QVHSLKGLIA--EELQAIPN-VTLFQGPLL 59
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + D + A +A++ + I + A A ++ I
Sbjct: 60 NNVPL--------MDTLFEGAHLAFI----NTTSQAGDEIAIGKDLADAAKRAGTIQHYI 107
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
YSS + P+ + Y + + + +
Sbjct: 108 YSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGL------------PSTFVYAGIY---- 151
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+ + + + + + D+
Sbjct: 152 -----------------NNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDV 194
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR------PG 345
A + + G T + S + A +A + + + P
Sbjct: 195 GPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNRRVTYVQVPKVEIKVNIPV 254
Query: 346 DYAEVYSDPSKIRDELNW 363
Y E + E
Sbjct: 255 GYREQLEAIEVVFGEHKA 272
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 4e-10
Identities = 23/213 (10%), Positives = 53/213 (24%), Gaps = 32/213 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ + G G G + ++ Y VT++ S +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDK-- 63
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
DAV+ L ++ I+ AM AH V ++
Sbjct: 64 ---------TVAGQDAVIVLLGTRN-------DLSPTTVMSEGARNIVAAMKAHGVDKVV 107
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
++ +P K+ + ++ + + + + + ++
Sbjct: 108 ACTSAFLLWDPTKV-------PPRLQAVTDDHIRMHKVL----RESGLKYVAVMPPHIGD 156
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGII 264
G IS D ++
Sbjct: 157 QPLTGAYTVTLDGRGPS-RVISKH--DLGHFML 186
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 2e-07
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 7/168 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQP--GQLQFIYAD 109
+VTGGA IG LL+ V I A LQ P ++ I +
Sbjct: 15 AIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 74
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA-HKVK 168
+ + + VN + V G L P + + + ++ + K
Sbjct: 75 IRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCK 134
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT 216
+ S G + + G A+ + + +K+
Sbjct: 135 AVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAG----VYNLTKS 178
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 49.2 bits (117), Expect = 3e-07
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V++TG + IG A+ ++ VTI S +++ + Q+ + AD+
Sbjct: 8 VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 67
Query: 112 DAKAVNKIFAE 122
++I
Sbjct: 68 TEDGQDQIINS 78
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 48.5 bits (115), Expect = 5e-07
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 18/150 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTGG+ IG L V R L + + +++ DL
Sbjct: 11 ALVTGGSRGIGYGIVEELASLGASVYTCS---RNQKELNDCLTQWRSKGFKVEASVCDLS 67
Query: 112 DAKAVNKIFAE------NAFDAVMHFAAVAYVG---ESTLEPLRYYH--NITSNTLVILE 160
++ + +++ A + + T+E N + + +
Sbjct: 68 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVL 127
Query: 161 AMAAHKVK----TLIYSSTCATYGEPDKMP 186
A K + SS P +
Sbjct: 128 AHPFLKASERGNVVFISSVSGALAVPYEAV 157
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 48.2 bits (114), Expect = 6e-07
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG IG A+ L + +V + + A +V+ + + A++G
Sbjct: 21 ALVTGAGRGIGREMAMELGRRGCKVIVNY--ANSTESAEEVVAAIKKNGSDAACVKANVG 78
Query: 112 DAKAVNKIFAE 122
+ + ++F E
Sbjct: 79 VVEDIVRMFEE 89
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 47.7 bits (113), Expect = 8e-07
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++TGGAG IG A ++ +V I D + KV + P + F++ D+
Sbjct: 9 AIITGGAGGIGETTAKLFVRYGAKVVIAD---IADDHGQKVCNNI-GSPDVISFVHCDVT 64
Query: 112 DAKAVNKIFAENA-----FDAVMHFAAVAYVGESTLE 143
+ V + D + V ++
Sbjct: 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSIL 101
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.3 bits (112), Expect = 8e-07
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG IG L +V V R N V + +E ++ + DLG
Sbjct: 8 ALVTGAGKGIGRDTVKALHASGAKVVAVT---RTNSDLVSLAKEC----PGIEPVCVDLG 60
Query: 112 DAKAVNKIFAE-NAFDAVMHFAAVAYVG 138
D A K D +++ AA+ +
Sbjct: 61 DWDATEKALGGIGPVDLLVNNAALVIMQ 88
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 47.5 bits (112), Expect = 9e-07
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG IG ALRL+KD + V I D + A V E+ G + D+
Sbjct: 4 ALVTGAGQGIGKAIALRLVKDGFAVAIAD---YNDATAKAVASEINQAGGHAVAVKVDVS 60
Query: 112 DAKAVNKIFAE 122
D V +
Sbjct: 61 DRDQVFAAVEQ 71
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (112), Expect = 1e-06
Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 10/141 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG A IG A LL +V +VD + L E F P + FI D+
Sbjct: 6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-PQKTLFIQCDVA 64
Query: 112 DAKAVNKIFAE--NAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAHK 166
D + + F + + F + A V N+ S T + L+ M+
Sbjct: 65 DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQN 124
Query: 167 VKT----LIYSSTCATYGEPD 183
+ SS
Sbjct: 125 GGEGGIIINMSSLAGLMPVAQ 145
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 47.4 bits (112), Expect = 1e-06
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG IG A RL K+ RV + RG G L+EL + D+
Sbjct: 5 ALVTGATSGIGLEIARRLGKEGLRVFVCA---RGEEGLRTTLKELREAGVEADGRTCDVR 61
Query: 112 DAKAVNKIFAE 122
+ + A
Sbjct: 62 SVPEIEALVAA 72
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 47.0 bits (111), Expect = 1e-06
Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 9/157 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYADL 110
LVTGG+ +G A L + V + R A + Q+L + G + D+
Sbjct: 8 ALVTGGSRGLGFGIAQGLAEAGCSVVVAS---RNLEEASEAAQKLTEKYGVETMAFRCDV 64
Query: 111 GDAKAVNKIFAE-----NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
+ + V K+ D V++ A + + PL + + L +
Sbjct: 65 SNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCRE 124
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA 202
L S + + P K
Sbjct: 125 AFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKG 161
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (112), Expect = 1e-06
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++TG + IG A+ ++ +VTI + + + + + AD+
Sbjct: 8 AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 67
Query: 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVG 138
++I + D +++ A A
Sbjct: 68 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPD 99
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 46.6 bits (110), Expect = 2e-06
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTGG+ IG L RV R + L+ + ++ DL
Sbjct: 9 ALVTGGSKGIGYAIVEELAGLGARVYTCS---RNEKELDECLEIWREKGLNVEGSVCDLL 65
Query: 112 DAKAVNKIFAE 122
+K+
Sbjct: 66 SRTERDKLMQT 76
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 46.6 bits (110), Expect = 2e-06
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYADL 110
++VTGG IG + V ++ R AV+V +++ + G + + D+
Sbjct: 12 IIVTGGNRGIGLAFTRAVAAAGANVAVIY---RSAADAVEVTEKVGKEFGVKTKAYQCDV 68
Query: 111 GDAKAVNKIFAE-----NAFDAVMHFAAVAY---VGESTLEPLRYYHNI 151
+ V K + ++ A V+ E T E + +++
Sbjct: 69 SNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDV 117
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 46.2 bits (109), Expect = 2e-06
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V++TG + IG AA+ K+ +VTI + + + ++ + AD+
Sbjct: 7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 66
Query: 112 DAKAVNKIFAE 122
+A + I
Sbjct: 67 EASGQDDIINT 77
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 46.2 bits (109), Expect = 3e-06
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG IG A L K V + R V+ E+ + D+
Sbjct: 13 ALVTGAGRGIGREIAKMLAKSVSHVICIS---RTQKSCDSVVDEIKSFGYESSGYAGDVS 69
Query: 112 DAKAVNKIFA 121
+ ++++
Sbjct: 70 KKEEISEVIN 79
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 46.3 bits (109), Expect = 3e-06
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 4/115 (3%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYADL 110
+TGG +G L + I R +++ Q G ++ I D+
Sbjct: 28 AFITGGGTGLGKGMTTLLSSLGAQCVIAS---RKMDVLKATAEQISSQTGNKVHAIQCDV 84
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
D V +E A + + + P T+ +
Sbjct: 85 RDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTA 139
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 45.7 bits (108), Expect = 3e-06
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 19/150 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTGGA +G LL + +V D ++ EL + F+ D+
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGAKVAFSD---INEAAGQQLAAEL---GERSMFVRHDVS 62
Query: 112 DAKAVNKIF--AENAF---DAVMHFAAVAYVG---ESTLEPLRYYHNITSNTLVILEAMA 163
+ + + +++ A + G LE I + ++ I
Sbjct: 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQG 122
Query: 164 AHKVKT-----LIYSSTCATYGEPDKMPIT 188
+K + +S + +
Sbjct: 123 IAAMKETGGSIINMASVSSWLPIEQYAGYS 152
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++TG IG A+ V + D A V+ E+ GQ D+
Sbjct: 14 AIITGAGAGIGKEIAITFATAGASVVVSD---INADAANHVVDEIQQLGGQAFACRCDIT 70
Query: 112 DAKAVNKI--FAENAF---DAVMHFAAVAYVG 138
+ ++ + FA + D +++ A
Sbjct: 71 SEQELSALADFAISKLGKVDILVNNAGGGGPK 102
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 45.9 bits (108), Expect = 3e-06
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V++TG + +G A+R + +V + A VL+E+ G+ + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYR--SKEDEANSVLEEIKKVGGEAIAVKGDVT 67
Query: 112 DAKAVNKIFAE 122
V +
Sbjct: 68 VESDVINLVQS 78
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 4e-06
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTG IG L RV V L L + ++ + DLG
Sbjct: 10 VLVTGAGKGIGRGTVQALHATGARVVAVSR-------TQADLDSLVRECPGIEPVCVDLG 62
Query: 112 DAKAVNKIFAE-NAFDAVMHFAAVAYVG 138
D +A + D +++ AAVA +
Sbjct: 63 DWEATERALGSVGPVDLLVNNAAVALLQ 90
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 45.5 bits (107), Expect = 4e-06
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TGG +G A+RL + ++++VD S G + + E P ++ AD+
Sbjct: 7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD-AEVLTTVADVS 65
Query: 112 DAKAVNKIFAE 122
D V
Sbjct: 66 DEAQVEAYVTA 76
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 45.6 bits (107), Expect = 4e-06
Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 6/155 (3%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG G IG ALRL ++ + ++D K + + + + D+
Sbjct: 8 CLVTGAGGNIGLATALRLAEEGTAIALLD---MNREALEKAEASVREKGVEARSYVCDVT 64
Query: 112 DAKAVNKIF--AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+AV F + A + Y + + L I A H +K
Sbjct: 65 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKA 124
Query: 170 LIYSSTCATYGEPDKMP-ITESTPQKPINPYGKAK 203
+ YG + + YG +K
Sbjct: 125 VSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSK 159
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 45.4 bits (107), Expect = 4e-06
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++TGG IG A + +++ +V I + + + P Q+QF D
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 112 DAKAVNKIFAE 122
D K+F
Sbjct: 65 DEDGWTKLFDA 75
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 45.5 bits (107), Expect = 4e-06
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V+VTG + IG AL L K +V + +R A +V +++ GQ D+
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNY--ARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 112 DAKAVNKIFA 121
V +
Sbjct: 62 KEADVEAMMK 71
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 45.4 bits (107), Expect = 5e-06
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V++TGGA +G+ AA + + RV + D + +EL ++ + D+
Sbjct: 8 VIITGGARGLGAEAARQAVAAGARVVLAD---VLDEEGAATAREL---GDAARYQHLDVT 61
Query: 112 DAKAVNKIFAE 122
+ ++ A
Sbjct: 62 IEEDWQRVVAY 72
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 45.1 bits (106), Expect = 6e-06
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG A IG A ++ + VD R + + L + + AD+
Sbjct: 8 ILVTGAASGIGRAALDLFAREGASLVAVD---REERLLAEAVAAL---EAEAIAVVADVS 61
Query: 112 DAKAVNKIF--AENAF---DAVMHFAAVAYVGESTLEPLRYYHNITSNTL 156
D KAV +F A F V HFA VA+ S PL + + L
Sbjct: 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNL 111
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 6e-06
Identities = 21/259 (8%), Positives = 58/259 (22%), Gaps = 54/259 (20%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V + G +G G +L+ + R + + + + + +
Sbjct: 17 VFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYAS 76
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + F A + + L
Sbjct: 77 AFQGHDVGFCCLGTTRGKAGAE--------------------------GFVRVDRDYVLK 110
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+ G + S+ + ++ ++ + + R ++
Sbjct: 111 SAELAKAGGCKHFNLL--SSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLC 168
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
E R GE R L ++ + V +
Sbjct: 169 DRQESRPGEW-----------------LVRKFFGSLPDSWASGHS---------VPVVTV 202
Query: 292 VDAHVLALANAKPGKVGIY 310
V A + + + ++ +
Sbjct: 203 VRAMLNNVVRPRDKQMELL 221
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 44.7 bits (105), Expect = 6e-06
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
L TG IG A+ L + V + S A +V+ EL Q I AD+
Sbjct: 9 ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK--AAEEVVAELKKLGAQGVAIQADIS 66
Query: 112 DAKAVNKIFAE 122
V +F +
Sbjct: 67 KPSEVVALFDK 77
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.0 bits (106), Expect = 6e-06
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG IG + R + L + + Q+ D
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGFGAVIHTCA---RNEYELNECLSKWQKKGFQVTGSVCDAS 67
Query: 112 DAKAVNKIFAE 122
K+
Sbjct: 68 LRPEREKLMQT 78
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (106), Expect = 7e-06
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG +G IG+ A L++ +V + GN+ + + PG L DL
Sbjct: 13 ALVTGASGGIGAAVARALVQQGLKVVGCA-RTVGNIEELAAECKSAGYPGTLIPYRCDLS 71
Query: 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVG 138
+ + + +F+ + D ++ A +A
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPD 103
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 44.3 bits (104), Expect = 1e-05
Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 24/149 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TGGA +G R + + +V ++D + ++ + + I D+
Sbjct: 8 VLITGGASGLGRALVDRFVAEGAKVAVLD---KSAERLAELETDH---GDNVLGIVGDVR 61
Query: 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVGESTLEPLRYYH----------NITSNTL 156
+ + + D ++ A + + ++ N+
Sbjct: 62 SLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIH 121
Query: 157 VI---LEAMAAHKVKTLIYSSTCATYGEP 182
+ L A+ A + + S Y
Sbjct: 122 AVKACLPALVASRGNVIFTISNAGFYPNG 150
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 44.1 bits (104), Expect = 1e-05
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
++TGGA IG A R + + I D A ++ L ++ + D+
Sbjct: 8 AVITGGANGIGRAIAERFAVEGADIAIADL--VPAPEAEAAIRNL---GRRVLTVKCDVS 62
Query: 112 DAKAVNKIFAE 122
V +
Sbjct: 63 QPGDVEAFGKQ 73
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (103), Expect = 1e-05
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V+VTGG IG+ + RV I D + G + QEL FI D+
Sbjct: 9 VVVTGGGRGIGAGIVRAFVNSGARVVICD---KDESGGRALEQEL----PGAVFILCDVT 61
Query: 112 DAKAVNKIFAE 122
V + +E
Sbjct: 62 QEDDVKTLVSE 72
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
L+TG A IG A +++ RV I D A E+ I D+
Sbjct: 8 ALITGSARGIGRAFAEAYVREGARVAIAD---INLEAARATAAEI---GPAACAIALDVT 61
Query: 112 DAKAVNKIFAE 122
D ++++ AE
Sbjct: 62 DQASIDRCVAE 72
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TG IG A K ++ + D G + + ++ D
Sbjct: 10 VLITGAGHGIGRLTAYEFAKLKSKLVLWD---INKHGLEETAAKCKGLGAKVHTFVVDCS 66
Query: 112 DAKAVNKIFAENA-----FDAVMHFAAVAYVG 138
+ + + + +++ A V Y
Sbjct: 67 NREDIYSSAKKVKAEIGDVSILVNNAGVVYTS 98
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.7 bits (100), Expect = 3e-05
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LV+GGA +G+ ++ + +V D + + EL ++++ D+
Sbjct: 9 ALVSGGARGMGASHVRAMVAEGAKVVFGD---ILDEEGKAMAAEL---ADAARYVHLDVT 62
Query: 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVGESTLEPLRYYHNI 151
+++ A + +G L + I
Sbjct: 63 QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRI 107
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 42.9 bits (100), Expect = 3e-05
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYADL 110
+VTG IG A L + + KV L Q G ++ + ADL
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGADIVLNGF--GDAAEIEKVRAGLAAQHGVKVLYDGADL 64
Query: 111 GDAKAVNKIFAE 122
+AV +
Sbjct: 65 SKGEAVRGLVDN 76
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 41.7 bits (97), Expect = 6e-05
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRV----TIVDNLSRGNMGAVKVLQELFPQPGQLQFIY 107
+L+TG IG AL + + ++ SR K+ E + I
Sbjct: 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 63
Query: 108 ADLGDAKAVNKIFAE 122
AD+ D V ++
Sbjct: 64 ADISDMADVRRLTTH 78
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (96), Expect = 1e-04
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVD------NLSRGNMGAVKVLQELFPQPGQLQF 105
VLVTG G +G AL + V + D + +G+ A KV++E+ + G+
Sbjct: 10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVA 69
Query: 106 IYADLGDAKAVNKIFAEN--AFDAVMHFAAVAYVG---ESTLEPLRYYHNI 151
Y + + + K + D V++ A + + E +
Sbjct: 70 NYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRV 120
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG IG A RL D ++V + S P L + D+
Sbjct: 10 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS--------------GAPKGLFGVEVDVT 55
Query: 112 DAKAVNKIFAE 122
D+ AV++ F
Sbjct: 56 DSDAVDRAFTA 66
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 41.0 bits (96), Expect = 1e-04
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGA IG A ++ V + D +V + + F DL
Sbjct: 8 VLVTGGARGIGRAIAQAFAREGALVALCDL----RPEGKEVAEAI-----GGAFFQVDLE 58
Query: 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVG 138
D + + E D +++ AA+A G
Sbjct: 59 DERERVRFVEEAAYALGRVDVLVNNAAIAAPG 90
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TG A IG K+ R+ D + + + + D+
Sbjct: 8 VLITGAAHGIGRATLELFAKEGARLVACD---IEEGPLREAAEAV-----GAHPVVMDVA 59
Query: 112 DAKAVNKIFAE-----NAFDAVMHFAAVAYVG 138
D +V + FAE D V+H+A +
Sbjct: 60 DPASVERGFAEALAHLGRLDGVVHYAGITRDN 91
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.5 bits (93), Expect = 1e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIV 79
VL+ G G G H R+L + ++
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVI 32
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLV GG G +GS ++ V +D + A +++ Q + A
Sbjct: 5 VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTA--- 61
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLR------YYHNITSNTLVILEAMAAH 165
V K+ + DA++ A G + + L + +I ++T+ A
Sbjct: 62 ---EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHL 118
Query: 166 KVK--TLIYSSTCATYGEPDKMPITES 190
K + + A G P + +
Sbjct: 119 KEGGLLTLAGAKAALDGTPGMIGYGMA 145
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.9 bits (90), Expect = 6e-04
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+VT + G +ALRL + + V D + K EL + +
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAGHTVACHDE-------SFKQKDEL--EAFAETYPQLKPM 53
Query: 112 DAKAVNKIFAE--NAF---DAVMHFAAVAYVGESTLE 143
+ ++ +A+ D ++ A + +
Sbjct: 54 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDK 90
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 38.7 bits (89), Expect = 6e-04
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V+VTG IG +L+KD I+ +R A ++ ++ + +
Sbjct: 6 VVVTGANRGIGLGLVQQLVKDKNIRHIIA-TARDVEKATELKSIK---DSRVHVLPLTVT 61
Query: 112 DAKAVN-------KIFAENAFDAVMHFAAVAYVGESTLEP 144
K+++ +I + +++ A V + EP
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEP 101
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 8e-04
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---GNMGAVKVLQELFPQPGQLQFIYA 108
VL+TG + IG H A+RL D + V R + + L PG L+ +
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64
Query: 109 DLGDAKAVNKIFAENAFDAVMHF 131
D+ D+K+V V
Sbjct: 65 DVRDSKSVAAARERVTEGRVDVL 87
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 38.1 bits (88), Expect = 0.001
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+V+ G IG + L+K + + ++ + N A+ L+ + P+ Y
Sbjct: 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE-NPTALAELKAINPKVNITFHTYDVT 65
Query: 111 GDAKAVNKIFAE 122
K+ +
Sbjct: 66 VPVAESKKLLKK 77
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.5 bits (86), Expect = 0.001
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V+V GG G +GS K+ Y V +D + + ++ G + +
Sbjct: 5 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILV------DGNKNWTEQEQS 58
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHN 150
+ + D V A G ++ + +
Sbjct: 59 ILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNAD 97
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 37.6 bits (86), Expect = 0.001
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADL 110
++TGGA IG A+RL + +RV + S G A +++ EL G DL
Sbjct: 4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG--AAQRLVAELNAARAGSAVLCKGDL 61
Query: 111 GDAKAVNKIFAENAFDAVM 129
+ ++ E+ D
Sbjct: 62 SLSSSLLD-CCEDIIDCSF 79
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.3 bits (83), Expect = 0.004
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY--AD 109
++TG + G A +L + +++ +R ++ +EL Q L+ + AD
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYV 137
LG V ++ + +
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLL 96
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.96 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.96 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.96 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.93 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.85 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.85 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.85 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.85 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.85 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.84 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.84 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.84 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.84 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.84 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.83 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.83 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.83 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.83 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.83 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.83 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.83 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.83 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.82 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.82 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.82 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.82 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.82 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.82 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.82 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.82 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.82 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.82 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.81 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.81 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.81 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.81 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.8 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.79 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.79 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.79 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.79 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.78 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.78 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.78 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.77 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.77 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.77 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.77 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.76 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.76 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.76 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.75 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.75 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.74 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.73 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.73 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.72 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.71 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.71 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.68 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.67 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.66 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.66 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.64 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.62 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.58 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.57 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.5 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.45 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.39 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.17 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.39 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.39 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.16 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.16 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.1 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.0 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.99 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.97 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.96 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.95 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.91 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.9 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.8 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.79 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.79 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.78 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.77 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.75 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.73 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.67 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.61 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.57 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.54 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.49 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.48 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.46 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.41 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.39 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.34 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.33 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.32 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.3 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.29 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.28 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.28 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.27 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.23 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.23 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.21 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.19 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.17 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.15 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.15 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.1 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.09 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.07 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.01 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.93 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.91 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.91 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.86 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.83 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.81 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.76 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.73 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.65 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.55 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.53 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.52 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.5 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.42 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.42 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.4 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.4 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.36 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.31 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.27 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.26 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.23 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.15 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.15 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.14 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.13 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.12 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.11 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 96.1 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.07 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.98 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.96 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.85 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.84 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.8 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.75 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.73 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.67 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.67 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.49 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.48 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.47 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.37 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.35 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.32 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.27 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.27 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.26 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.25 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.19 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.17 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.15 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.09 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.95 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.89 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.84 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.83 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 94.82 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 94.72 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.7 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.7 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.7 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.64 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 94.62 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.54 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.5 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.5 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.47 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.45 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.45 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.36 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.32 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.29 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.21 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.08 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.01 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 93.88 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 93.86 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.84 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.82 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.81 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.64 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.64 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.47 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.45 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.43 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 93.31 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.3 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.3 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.3 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.07 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.06 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.04 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.02 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 93.01 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 93.0 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.93 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 92.92 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.87 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.71 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.62 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.27 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.22 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 92.2 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 91.99 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.78 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.7 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 91.68 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.67 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.65 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.57 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.5 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.48 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.43 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.21 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.17 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 90.98 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 90.95 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 90.86 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.78 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 90.7 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 90.68 | |
| d1qkia1 | 203 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 90.63 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 90.39 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.71 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 89.57 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 89.55 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.52 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 89.49 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 89.02 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.78 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 87.58 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.44 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.41 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 87.22 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.9 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 86.86 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 86.48 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 86.02 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.61 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.59 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.41 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 85.36 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.98 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 84.61 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 84.52 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 84.18 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 83.52 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 82.66 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 82.46 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 82.06 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 81.92 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 81.87 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 81.85 | |
| d1h9aa1 | 195 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 81.83 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 81.63 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 81.37 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 81.12 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 80.54 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 80.09 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 80.05 |
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-52 Score=393.43 Aligned_cols=334 Identities=40% Similarity=0.677 Sum_probs=284.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||||||||||||++|++.|+++|++|++++|................ ..++.++++|++|.+.+.++++..+||+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 679999999999999999999999999999986655444333333322 258999999999999999999877999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCC-CCCCCChHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITEST-PQKPINPYGKAKKMSED 208 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~ 208 (393)
|+|+....+.+..++...+++|+.++.+++++|++.+++++|++||.++|+.....+..|+. +..|.++|+.+|..+|.
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~ 158 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQ 158 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhH
Confidence 99998766555668889999999999999999999999999999999999877665555554 56799999999999999
Q ss_pred HHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccccc
Q 016208 209 IIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287 (393)
Q Consensus 209 ~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 287 (393)
++..+..+ .+++++++||+++|||++.+.+++.+..... .+++.+...+......+.++|......++.+.|+|+|
T Consensus 159 ~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~ 235 (338)
T d1udca_ 159 ILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPN---NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCC---SHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred HHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHH---HHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEE
Confidence 99976665 5899999999999999988777665543332 5778888877776544999998888888999999999
Q ss_pred HHHHHHHHHHHHhc-CCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCcee
Q 016208 288 VTDLVDAHVLALAN-AKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTAR 366 (393)
Q Consensus 288 v~Dva~a~~~~l~~-~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 366 (393)
++|+++++..++.. .....+++||+++++.+|+.|+++.+.+.+|.+.+....+..+.+.....+|++|+++.|||+|+
T Consensus 236 v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~ 315 (338)
T d1udca_ 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred EeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcC
Confidence 99999998887763 22334579999999999999999999999999999888888888888889999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhccCCCC
Q 016208 367 FTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 367 ~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
+ +++|+|+++++|+++|++||-
T Consensus 316 ~-~l~egi~~ti~w~~~~~~~~~ 337 (338)
T d1udca_ 316 R-TLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_dssp C-CHHHHHHHHHHHHHHCTTCSC
T ss_pred C-CHHHHHHHHHHHHHhchhhCC
Confidence 9 899999999999999999873
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1e-51 Score=385.46 Aligned_cols=313 Identities=26% Similarity=0.379 Sum_probs=271.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeE------EEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRV------TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
|||||||||||||++|+++|+++|++| +++++....... ..+.... ...++.++.+|+.+...+.... .
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~--~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPVD-ADPRLRFVHGDIRDAGLLAREL--R 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGGT-TCTTEEEEECCTTCHHHHHHHT--T
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhhh-cCCCeEEEEeccccchhhhccc--c
Confidence 689999999999999999999999854 445443222211 1112221 2368999999999999988877 8
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
++|+|+|+|+.........++...+++|+.++.+++++|.+.+++++||+||.++||.....+++|+++..|.++||.+|
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~sK 155 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASK 155 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHHH
Confidence 99999999988766666778888999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
.++|.+++.++++.++++++|||++||||++... .+++.++..+..+.+ +.++| +|++.|
T Consensus 156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-------------~~i~~~i~~~~~~~~-i~v~~------~g~~~r 215 (322)
T d1r6da_ 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-------------KLIPLFVTNLLDGGT-LPLYG------DGANVR 215 (322)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-------------SHHHHHHHHHHTTCC-EEEET------TSCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-------------cHHHHHHHHHHcCCC-cEEec------CCCeEE
Confidence 9999999999999999999999999999975432 688889999999888 99988 899999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCCCCCCcceecCHHHHHhhCC
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG 362 (393)
+|+|++|+|+++..+++.+..+ ++||+++++.+++.|+++.+.+.+|.+.+ +......+.......+|++|+++.||
T Consensus 216 ~~i~v~D~a~ai~~~~~~~~~~--~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 293 (322)
T d1r6da_ 216 EWVHTDDHCRGIALVLAGGRAG--EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293 (322)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTT--CEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHC
T ss_pred ccEEHHHHHHHHHHHHhCCCCC--CeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHC
Confidence 9999999999999999987654 69999999999999999999999998866 34455566677778899999999999
Q ss_pred CceeccCHHHHHHHHHHHHHhccCCCCC
Q 016208 363 WTARFTDLQGSLQIAWRWQKTHINGYGS 390 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 390 (393)
|+|++ +++|+|+++++||++|.++|.+
T Consensus 294 ~~p~~-~~eegI~~~i~w~~~n~~~~~~ 320 (322)
T d1r6da_ 294 YRPQV-SFADGLARTVRWYRENRGWWEP 320 (322)
T ss_dssp CCCCS-CHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCCCC-CHHHHHHHHHHHHHHhHHhHhh
Confidence 99999 8999999999999999887654
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-51 Score=385.36 Aligned_cols=314 Identities=22% Similarity=0.272 Sum_probs=248.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC--chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN--MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|+|||||||||||++|+++|+++|++|++++|..... ........+......+++++.+|++|.+++.+++++.++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 6899999999999999999999999999999854221 11111111222224689999999999999999998778999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC---cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV---KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
|||+|+..+...+..++...+++|+.+|.+|+++|++.++ ++|||+||+++||.....+++|+++..|.++|+.+|+
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK~ 161 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL 161 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHHH
Confidence 9999999887777888999999999999999999998764 4799999999999887789999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccc
Q 016208 205 MSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 284 (393)
++|++++.|+++.+++++++||+++|||+....+. ...+...+..+..+.+....+| ++++.++
T Consensus 162 ~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~g------~~~~~r~ 225 (357)
T d1db3a_ 162 YAYWITVNYRESYGMYACNGILFNHESPRRGETFV----------TRKITRAIANIAQGLESCLYLG------NMDSLRD 225 (357)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH----------HHHHHHHHHHHHTTSCCCEEES------CTTCEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCC----------chHHHHHHHHHHhCCCceEEEC------CCCeeec
Confidence 99999999999999999999999999996432210 0233333334444443255566 8999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc-----------------------
Q 016208 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS----------------------- 341 (393)
Q Consensus 285 ~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~----------------------- 341 (393)
|+|++|+|+++..+++... ++.||+++++.+|+.|+++.+.+.+|........+
T Consensus 226 ~~~v~D~~~a~~~~~~~~~---~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (357)
T d1db3a_ 226 WGHAKDYVKMQWMMLQQEQ---PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDV 302 (357)
T ss_dssp CEEHHHHHHHHHHTTSSSS---CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCE
T ss_pred ceeechHHHHHHHHHhCCC---CCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCce
Confidence 9999999999999887643 36999999999999999999999998654321100
Q ss_pred --------CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHh
Q 016208 342 --------RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383 (393)
Q Consensus 342 --------~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~ 383 (393)
.++.+.....+|++|++++|||+|++ +++|+|+++++++.+
T Consensus 303 ~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~-sl~egI~~~I~~~l~ 351 (357)
T d1db3a_ 303 IIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEI-TLREMVSEMVANDLE 351 (357)
T ss_dssp EEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHH
T ss_pred eEeeccccCCCccccccccCHHHHHHHHCCCcCC-CHHHHHHHHHHHHHH
Confidence 01233445567999999999999999 999999999876544
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-50 Score=375.05 Aligned_cols=304 Identities=25% Similarity=0.403 Sum_probs=258.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.|||||||||||||++|+++|+++|++|++++|............ .....+++...|+.+. ++ .++|+|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~-----~~--~~~d~V 69 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW----IGHENFELINHDVVEP-----LY--IEVDQI 69 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG----TTCTTEEEEECCTTSC-----CC--CCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHh----cCCCceEEEehHHHHH-----HH--cCCCEE
Confidence 379999999999999999999999999999987544332222111 1124567777776433 34 589999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCC-----CCCCCCChHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITES-----TPQKPINPYGKAK 203 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK 203 (393)
||+|+......+..++...+++|+.++.+|+++|++.++ ++||+||.++||.....+.+|+ +|..|.++|+.+|
T Consensus 70 ihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK 148 (312)
T d2b69a1 70 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 148 (312)
T ss_dssp EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHH
T ss_pred EECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHH
Confidence 999998766555678889999999999999999999987 8999999999998766566654 4677899999999
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 204 KMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
.++|.+++.|++.+|++++++||++||||+.....+ .+++.++..+..+++ +.++| +|.+.+
T Consensus 149 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~-----------~~i~~~i~~~~~g~~-i~i~~------~g~~~r 210 (312)
T d2b69a1 149 RVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG-----------RVVSNFILQALQGEP-LTVYG------SGSQTR 210 (312)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCC-----------CHHHHHHHHHHHTCC-EEEES------SSCCEE
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCc-----------cHHHHHHHHHHcCCC-eEEeC------CCCeeE
Confidence 999999999999999999999999999998654321 678888888888888 88888 899999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCC
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNW 363 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 363 (393)
+|+|++|+++++..+++.... ++||+++++.+++.++++.+++.+|.+.++...+....+.....+|++|+++.|||
T Consensus 211 ~~i~v~D~~~~~~~~~~~~~~---~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw 287 (312)
T d2b69a1 211 AFQYVSDLVNGLVALMNSNVS---SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGW 287 (312)
T ss_dssp ECEEHHHHHHHHHHHHTSSCC---SCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCC
T ss_pred ccEEHHHHHHHHHHHHhhccC---CceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCC
Confidence 999999999999998876543 59999999999999999999999999998888887777888889999999999999
Q ss_pred ceeccCHHHHHHHHHHHHHhccC
Q 016208 364 TARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 364 ~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
+|++ +++|+|+++++||+++.+
T Consensus 288 ~p~~-~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 288 EPVV-PLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CCCS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHh
Confidence 9999 899999999999988754
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.9e-50 Score=376.86 Aligned_cols=334 Identities=38% Similarity=0.655 Sum_probs=270.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|.|||||||||||++|+++|+++|++|+++++..+............. ..+++++.+|+.|.+++..++...++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc--ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 469999999999999999999999999999886655443333333222 257899999999999999999888999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC----CCCCCCCCCCCCCChHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD----KMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~----~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
|+|+.........++...+.+|+.++.+++++|++.+++++|++||.++||... ..+++|+.+..|.++|+.+|.+
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~ 159 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYA 159 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHH
Confidence 999987666667788889999999999999999999999999999999998653 3568899999999999999999
Q ss_pred HHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 206 SEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 206 ~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
+|++++.+.+. .+++++++||+++||+.+.+.+++.+.... +.+++.+...+......+.++|......++...+
T Consensus 160 ~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~ 236 (347)
T d1z45a2 160 IENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIP---NNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 236 (347)
T ss_dssp HHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSC---CSHHHHHHHHHTTSSSCCCCC------CCSSCEE
T ss_pred HHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccH---HHHHHHHHHHHhcCCCCeEEeCCCccccCCceee
Confidence 99999998764 689999999999999988777665544222 2567777777665443388888666667778899
Q ss_pred ccccHHHHHHHHHHHHhcC-----CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHH
Q 016208 284 DYIDVTDLVDAHVLALANA-----KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIR 358 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~-----~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 358 (393)
|++++.|++.++..+++.. ....+++||+++++++|+.|+++.+.+.+|.+.++...+..+++.....+|++|++
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAK 316 (347)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHH
T ss_pred eeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHH
Confidence 9999999999998887631 12234799999999999999999999999999888777777777778889999999
Q ss_pred hhCCCceeccCHHHHHHHHHHHHHhccCCCC
Q 016208 359 DELNWTARFTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 359 ~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
++|||+|++ +++|+|+++++|+++|+++|+
T Consensus 317 ~~lGw~p~~-~lee~i~~ti~w~~~np~~~~ 346 (347)
T d1z45a2 317 RELKWQTEL-QVEDSCKDLWKWTTENPFGYQ 346 (347)
T ss_dssp HHTCCCCCC-CHHHHHHHHHHHHHHCTTCSC
T ss_pred HHHCCCCCC-CHHHHHHHHHHHHHhChhcCc
Confidence 999999999 899999999999999999986
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.7e-50 Score=382.88 Aligned_cols=312 Identities=24% Similarity=0.359 Sum_probs=261.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeE-EEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRV-TIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|||||||||||||++|+++|+++|++| +++++...... ...+..+.. ..+++++.+|++|+..+..+++..++|+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHHHHhhhh-cCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 689999999999999999999999975 45554332221 222333322 36899999999999999999987789999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC---------CcEEEEeecceeecCCCCC----------CCCC
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK---------VKTLIYSSTCATYGEPDKM----------PITE 189 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---------~~~~V~~SS~~vyg~~~~~----------~~~E 189 (393)
||+||......+..++...+++|+.++.+++++|++.+ +++|||+||..+||..... ...|
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 99999876665667888999999999999999998764 3489999999999865322 2346
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
..+..|.++||.+|.++|.++..++++.++++++|||++||||+.... .+++.++..+..+++ +.+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-------------~~i~~~i~~~~~g~~-~~v 223 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-------------KLIPLVILNALEGKP-LPI 223 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------------SHHHHHHHHHHHTCC-EEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC-------------cHHHHHHHHHHcCCC-cEE
Confidence 677889999999999999999999999999999999999999975421 678888999999988 888
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC--------CcceEEcc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV--------NIKVEYLS 341 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~--------~~~~~~~~ 341 (393)
+| +|++.|+|+|++|+|+++..+++....+ ++|||++++..++.|+++.+.+.++. +..+...+
T Consensus 224 ~g------~g~~~r~~i~v~D~a~ai~~~~~~~~~~--~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 295 (361)
T d1kewa_ 224 YG------KGDQIRDWLYVEDHARALHMVVTEGKAG--ETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA 295 (361)
T ss_dssp ET------TSCCEEEEEEHHHHHHHHHHHHHHCCTT--CEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC
T ss_pred eC------CCCeEEeCEEHHHHHHHHHHHHhcCCCC--CeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecC
Confidence 88 8999999999999999999999987654 69999999999999999999887643 23445555
Q ss_pred CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 342 RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 342 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
..+.+...+.+|++|+++.|||+|++ +++|+|+++++||++++.+
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lgw~P~~-~l~e~i~~ti~w~~~n~~~ 340 (361)
T d1kewa_ 296 DRPGHDRRYAIDAGKISRELGWKPLE-TFESGIRKTVEWYLANTQW 340 (361)
T ss_dssp CCTTCCCBCCBCCHHHHHHHCCCCSC-CHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCCceeeeCHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHhHHH
Confidence 66777778899999999999999999 9999999999999988654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.9e-50 Score=375.54 Aligned_cols=318 Identities=26% Similarity=0.370 Sum_probs=271.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC--CCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ--PGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.+|+|||||||||||++|+++|+++|++|++++|...........++.+... ..+++++.+|+.|...+.... ..+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~--~~~ 92 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC--AGV 92 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH--TTC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccc--ccc
Confidence 4589999999999999999999999999999998655443332222222111 157899999999999988888 899
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKM 205 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 205 (393)
++|+|+++......+..++...++.|+.++.+++++|.+.+++++||+||.++||.....+++|++|..|.+.|+.+|.+
T Consensus 93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 172 (341)
T d1sb8a_ 93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYV 172 (341)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHH
T ss_pred cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHH
Confidence 99999999876666678889999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccccc
Q 016208 206 SEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285 (393)
Q Consensus 206 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 285 (393)
+|++++.+++..+++++++||++|||++..+... .+.++..++..+..+++ +.++| +|.+.++|
T Consensus 173 ~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~---------~~~~i~~~~~~~~~g~~-i~~~g------~g~~~r~~ 236 (341)
T d1sb8a_ 173 NELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGA---------YAAVIPKWTSSMIQGDD-VYING------DGETSRDF 236 (341)
T ss_dssp HHHHHHHHHHHHCCCCEEEEECCEECTTCCCCST---------TCCHHHHHHHHHHHTCC-CEEES------SSCCEECC
T ss_pred HHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCc---------hhhhHHHHHHHHHcCCc-eEEcC------CCCEEEEE
Confidence 9999999999999999999999999997654321 12577888888888888 88888 89999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCc-----ceEEccCCCCCCcceecCHHHHHhh
Q 016208 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI-----KVEYLSRRPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 286 i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~-----~~~~~~~~~~~~~~~~~d~~k~~~~ 360 (393)
+|++|+|.++..++.......+++||+++++..|+.|+++.|.+.++.+. .....+..+.+.....+|++|+++.
T Consensus 237 i~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 316 (341)
T d1sb8a_ 237 CYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKL 316 (341)
T ss_dssp EEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHH
T ss_pred EEEeccchhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHH
Confidence 99999999999998865544557999999999999999999999887442 2333344556666778999999999
Q ss_pred CCCceeccCHHHHHHHHHHHHHhc
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
|||+|++ +++++|+++++||+++
T Consensus 317 LGw~p~~-sl~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 317 LGYAPKY-DVSAGVALAMPWYIMF 339 (341)
T ss_dssp TCCCCCC-CHHHHHHHHHHHHHHH
T ss_pred HCCCcCC-CHHHHHHHHHHHHHHh
Confidence 9999999 8999999999999985
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-49 Score=370.62 Aligned_cols=334 Identities=40% Similarity=0.672 Sum_probs=280.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC------chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN------MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
+||||||||||||++|+++|+++|++|+++++..... ....+.+.... ..++.++.+|++|.+.+.+++...
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhc--CCCcEEEEeecccccccccccccc
Confidence 6899999999999999999999999999997643221 11222222221 358999999999999999999888
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCC-CCCCCCChHHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITES-TPQKPINPYGKA 202 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~-~~~~p~~~Y~~s 202 (393)
++++|+|+||..+...+..++...++.|+.++.+++++|++.+++++||+||..+|+........++ ....|.++|+.+
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 160 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKS 160 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHH
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHHH
Confidence 9999999999887666667888999999999999999999999999999999999998765443333 345678899999
Q ss_pred HHHHHHHHHHHHhh-CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 203 KKMSEDIIIDFSKT-TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 203 K~~~E~~~~~~~~~-~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
|..+|+.+..+++. .+++.+++||+++||+.....+++..+... ..+++.+...+......+.+.|....+.++.+
T Consensus 161 k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 237 (346)
T d1ek6a_ 161 KFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIP---NNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (346)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSC---CSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccH---HHHHHHHHHHHHcCCCcEEEcCCcccCCCCCe
Confidence 99999999998776 689999999999999987766665544322 15666666665554444888888888888999
Q ss_pred ccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhh
Q 016208 282 VRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDE 360 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 360 (393)
.|+|+|++|+|.++..++... ....+++||+++++.+++.|+++.+.+.+|.+.+....+.++++.....+|++|+++.
T Consensus 238 ~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~~~ 317 (346)
T d1ek6a_ 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEE 317 (346)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHT
T ss_pred eEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHHHH
Confidence 999999999999998876642 2334579999999999999999999999999999888888888888899999999999
Q ss_pred CCCceeccCHHHHHHHHHHHHHhccCCCC
Q 016208 361 LNWTARFTDLQGSLQIAWRWQKTHINGYG 389 (393)
Q Consensus 361 lG~~p~~~~~~e~l~~~~~~~~~~~~~~~ 389 (393)
|||+|++ +++|+|+++++||++|+++|+
T Consensus 318 lgw~p~~-slee~I~~~i~w~~~n~~~~~ 345 (346)
T d1ek6a_ 318 LGWTAAL-GLDRMCEDLWRWQKQNPSGFG 345 (346)
T ss_dssp TCCCCCC-CHHHHHHHHHHHHHHCTTCSC
T ss_pred HCCCcCC-CHHHHHHHHHHHHHhCHhhcC
Confidence 9999999 899999999999999999986
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=9.3e-50 Score=375.83 Aligned_cols=316 Identities=24% Similarity=0.352 Sum_probs=262.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+||+|||||||||||++|+++|+++|++|.++.+...........+..+. ..+++++.+|+.|.+.+.+++ .++|.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~--~~~i~~~~~Di~d~~~~~~~~--~~~~~ 76 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL--GDRVELVVGDIADAELVDKLA--AKADA 76 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC--SSSEEEEECCTTCHHHHHHHH--TTCSE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhh--cCCeEEEEccCCCHHHHHHHH--hhhhh
Confidence 58999999999999999999999999876555442211111112222221 358999999999999999999 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCC------------CCCCCCCCCCCCC
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEP------------DKMPITESTPQKP 195 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~------------~~~~~~E~~~~~p 195 (393)
|+|+|+......+..++...++.|+.++.+++++|...+. ++|++||..+||.. .....+|+++..|
T Consensus 77 v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p 155 (346)
T d1oc2a_ 77 IVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNP 155 (346)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCC
T ss_pred hhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCCC
Confidence 9999998766666678889999999999999999999986 89999999999742 2345778888999
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcccc
Q 016208 196 INPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYN 275 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
.+.||.+|.++|.+++.+++..+++++++||++||||+.... ..+...+.....+.+ +.++|
T Consensus 156 ~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-------------~~~~~~i~~~~~~~~-~~i~~---- 217 (346)
T d1oc2a_ 156 SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-------------KFIPRQITNILAGIK-PKLYG---- 217 (346)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-------------SHHHHHHHHHHHTCC-CEEET----
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-------------chhHHHHHHHHcCCc-eeEeC----
Confidence 999999999999999999998999999999999999864321 556666666667776 77777
Q ss_pred CCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcc-eEEccCCCCCCcceecCH
Q 016208 276 TADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDYAEVYSDP 354 (393)
Q Consensus 276 ~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~ 354 (393)
++++.++|+|++|+|++++.+++.+..+ +.||+++++..++.++++.+.+.++.+.. +...+..+.....+.+|+
T Consensus 218 --~g~~~r~~i~v~D~a~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 293 (346)
T d1oc2a_ 218 --EGKNVRDWIHTNDHSTGVWAILTKGRMG--ETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDA 293 (346)
T ss_dssp --TSCCEEECEEHHHHHHHHHHHHHHCCTT--CEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCC
T ss_pred --CCCccccccchhhHHHHHHHHHhhcccC--ccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCH
Confidence 8999999999999999999988877665 69999999999999999999999987643 455555666667788999
Q ss_pred HHHHhhCCCceeccCHHHHHHHHHHHHHhccCCCCC
Q 016208 355 SKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGS 390 (393)
Q Consensus 355 ~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~~~~ 390 (393)
+|+++.|||+|++++++|+|+++++||++|+++|.+
T Consensus 294 ~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~~~~ 329 (346)
T d1oc2a_ 294 SKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKA 329 (346)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998757999999999999999876643
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3e-46 Score=356.56 Aligned_cols=333 Identities=36% Similarity=0.603 Sum_probs=269.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeCCCCCCc---------hhhhhhhhh-----cCCCCccEEEEccCCCHH
Q 016208 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNM---------GAVKVLQEL-----FPQPGQLQFIYADLGDAK 114 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~Dl~~~~ 114 (393)
|||||||||||||++|+++|++ .|++|+++++..+... .....+... ......+.++.+|++|.+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence 6999999999999999999986 6999999986332211 011111111 111246889999999999
Q ss_pred HHHHHHhhC-CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCC-------CCC
Q 016208 115 AVNKIFAEN-AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPD-------KMP 186 (393)
Q Consensus 115 ~~~~~~~~~-~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~-------~~~ 186 (393)
.+.++++.. ++|+|||+|+..........+...++.|+.++.+++++|++.++++++++||..+|+... ..+
T Consensus 83 ~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 162 (383)
T d1gy8a_ 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEP 162 (383)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCCC
T ss_pred HhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccccc
Confidence 999998764 579999999987666566678888999999999999999999999999999999997543 346
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh-----
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR----- 261 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 261 (393)
+.|+.+..|.++|+.+|..+|++++.+.+.+|++++++||+++|||+....+...... ...+++.++..+.
T Consensus 163 ~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~----~~~~ip~ii~~~~~~~~~ 238 (383)
T d1gy8a_ 163 IDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQG----STHLIPIILGRVMSDIAP 238 (383)
T ss_dssp BCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTT----CCSHHHHHHHHHHHHHSC
T ss_pred cccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccc----cchhHHHHHHHHHhhccc
Confidence 7888899999999999999999999999989999999999999999876543221111 1134444433322
Q ss_pred -----------CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-------CCCcceEEecCCCcccHHHH
Q 016208 262 -----------GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-------PGKVGIYNVGTGKGRSVKEF 323 (393)
Q Consensus 262 -----------~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-------~~~~~~yni~~~~~~s~~el 323 (393)
.+.+ ++++|.....++|.+.|+|+|++|+|+++..+++... ...+++|||++++++|+.|+
T Consensus 239 ~~~~~~~~~~~~~~~-~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el 317 (383)
T d1gy8a_ 239 DQRLTIHEDASTDKR-MPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (383)
T ss_dssp C-----------CCC-EEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred cccchhhhhhhcCCc-eEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHH
Confidence 2344 7888888888899999999999999999999887321 12347999999999999999
Q ss_pred HHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHH-HHHHHhccCCC
Q 016208 324 VEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIA-WRWQKTHINGY 388 (393)
Q Consensus 324 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~-~~~~~~~~~~~ 388 (393)
++.+.+.+|.+.++...+.++++.....+|++|+++.|||+|++ +++|+|+++ +.|+++++++|
T Consensus 318 ~~~i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~-~l~e~i~~t~~~w~~~~~~~~ 382 (383)
T d1gy8a_ 318 IEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKY-DTLEAIMETSWKFQRTHPNGY 382 (383)
T ss_dssp HHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSC-CSHHHHHHHHHHHHHTCTTTT
T ss_pred HHHHHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCC-CHHHHHHHHHHHHHHhCcccC
Confidence 99999999999998888888888888899999999999999999 899999886 58999999988
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.4e-47 Score=352.02 Aligned_cols=312 Identities=23% Similarity=0.249 Sum_probs=257.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|||||||||||++|+++|+++||+|++++|...... ...+..+.. ..+++++.+|+.|.+.+.+.+....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGI-EGDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTC-GGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhcc-cCCcEEEEccccChHHhhhhhccccccccc
Confidence 68999999999999999999999999999998644322 122222222 257899999999999999999888899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSED 208 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 208 (393)
|+|+.........++...++.|+.++.+++++|++.++ ++++++||..+||.......+|++|..|.++|+.+|.++|+
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 157 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHW 157 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHHHH
Confidence 99988777666778899999999999999999999874 47888999999998888889999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccH
Q 016208 209 IIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288 (393)
Q Consensus 209 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 288 (393)
++..|+++.+++++++||+++|||.....+- .+.+...+.+...++.+ ...+| +|++.|+|+|+
T Consensus 158 ~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~---------~~~i~~~~~~~~~~~~~-~i~~g------~g~~~r~~i~v 221 (321)
T d1rpna_ 158 ITVNYRESFGLHASSGILFNHESPLRGIEFV---------TRKVTDAVARIKLGKQQ-ELRLG------NVDAKRDWGFA 221 (321)
T ss_dssp HHHHHHHHHCCCEEEEEECCEECTTSCTTSH---------HHHHHHHHHHHHTTSCS-CEEES------CTTCEEECEEH
T ss_pred HHHHHHhhcCCcEEEEEEecccCCCcccccc---------HHHHHHHHHHHHhCCCC-cEEEC------CCCeEEccEEe
Confidence 9999999999999999999999996432110 00233344444444444 55556 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce--EEcc--CCCCCCcceecCHHHHHhhCCCc
Q 016208 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV--EYLS--RRPGDYAEVYSDPSKIRDELNWT 364 (393)
Q Consensus 289 ~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~--~~~~--~~~~~~~~~~~d~~k~~~~lG~~ 364 (393)
+|+|+++..+++.+.. +.||+++++..|+.++++.+.+.+|.+.+. ...+ .++.+...+..|++|+++.|||+
T Consensus 222 ~D~~~~~~~~~~~~~~---~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~ 298 (321)
T d1rpna_ 222 GDYVEAMWLMLQQDKA---DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWK 298 (321)
T ss_dssp HHHHHHHHHHHHSSSC---CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCc---CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCC
Confidence 9999999999987654 489999999999999999999999987542 2222 34556667888999999999999
Q ss_pred eeccCHHHHHHHHHHHHHhc
Q 016208 365 ARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 365 p~~~~~~e~l~~~~~~~~~~ 384 (393)
|++ +++|+|+++++|++++
T Consensus 299 P~~-~l~e~i~~tv~~~l~~ 317 (321)
T d1rpna_ 299 PRT-SLDELIRMMVEADLRR 317 (321)
T ss_dssp CCS-CHHHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHH
Confidence 999 9999999999998764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.8e-46 Score=352.55 Aligned_cols=306 Identities=21% Similarity=0.280 Sum_probs=251.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||||||||||||++|+++|+++||+|+++++........ . ....++..+|+.+.+.+.+++ .++|+||
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~-----~----~~~~~~~~~D~~~~~~~~~~~--~~~d~Vi 84 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----D----MFCDEFHLVDLRVMENCLKVT--EGVDHVF 84 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----G----GTCSEEEECCTTSHHHHHHHH--TTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh-----h----cccCcEEEeechhHHHHHHHh--hcCCeEe
Confidence 7899999999999999999999999999998754432211 0 146688999999999999988 7999999
Q ss_pred EcccccCccC-CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCC-------CCCCCCCCCChHHH
Q 016208 130 HFAAVAYVGE-STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPI-------TESTPQKPINPYGK 201 (393)
Q Consensus 130 ~~A~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~-------~E~~~~~p~~~Y~~ 201 (393)
|+|+...... ....+...+..|+.++.+++++|.+.+++++|++||..+|+.....+. .|..+..|.++|+.
T Consensus 85 h~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~ 164 (363)
T d2c5aa1 85 NLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL 164 (363)
T ss_dssp ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHH
T ss_pred ecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHH
Confidence 9998664432 246678889999999999999999999999999999999987654443 34557789999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|.++|++++.+.+..|+++++|||+++||++........ ...............+ ...+| +|.+
T Consensus 165 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~g------~g~~ 229 (363)
T d2c5aa1 165 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGRE--------KAPAAFCRKAQTSTDR-FEMWG------DGLQ 229 (363)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCC--------CHHHHHHHHHHHCSSC-EEEES------CSCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccc--------cccccccccccccccc-ccccC------CCCe
Confidence 9999999999999989999999999999999755332211 0223333344444444 67777 8999
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHHHHHhhC
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDEL 361 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 361 (393)
.|+|+|++|+++++..+++... +++||+++++.+|+.|+++++.+.+|.+.++...+.. .......+|++|+++.|
T Consensus 230 ~rd~i~v~D~~~~~~~~~~~~~---~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~-~~~~~~~~d~ska~~~L 305 (363)
T d2c5aa1 230 TRSFTFIDECVEGVLRLTKSDF---REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP-EGVRGRNSDNNLIKEKL 305 (363)
T ss_dssp EECCEEHHHHHHHHHHHHHSSC---CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC-CCCSBCEECCHHHHHHH
T ss_pred EEEEeehhHHHHHHHHHHhCCC---CCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCC-CCccccccCHHHHHHHh
Confidence 9999999999999999887653 2599999999999999999999999998887766543 44556778999999999
Q ss_pred CCceeccCHHHHHHHHHHHHHhccC
Q 016208 362 NWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 362 G~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
||+|++ +++|+|+++++||+++.+
T Consensus 306 Gw~p~~-sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 306 GWAPNM-RLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp SCCCCC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999988643
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-46 Score=353.72 Aligned_cols=315 Identities=20% Similarity=0.245 Sum_probs=253.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|||||||||||||++|+++|+++| ++|+++++........ . ...+++++.+|+++.+++.+.+. .++|+|
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~-------~-~~~~~~~i~~Di~~~~~~~~~~~-~~~d~V 71 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF-------L-NHPHFHFVEGDISIHSEWIEYHV-KKCDVV 71 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG-------T-TCTTEEEEECCTTTCSHHHHHHH-HHCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh-------c-cCCCeEEEECccCChHHHHHHHH-hCCCcc
Confidence 689999999999999999999999 4899998754322211 1 13689999999998877666443 479999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCC-------CCCCCCChHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITES-------TPQKPINPYGK 201 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~-------~~~~p~~~Y~~ 201 (393)
||+|+.........++...+..|+.++.+++++|.+.++ +++++||..+|+.......+|. ....|.+.|+.
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~ 150 (342)
T d2blla1 72 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV 150 (342)
T ss_dssp EECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred ccccccccccccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchhhh
Confidence 999998776666777888999999999999999999987 6789999999997765554443 33456788999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|.++|+++..+++..|++++++||+.+||++.....+.... .......++..++.+++ +.+.| +|++
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~-~~~~~------~g~~ 218 (342)
T d2blla1 151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIG-----SSRAITQLILNLVEGSP-IKLID------GGKQ 218 (342)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSC-----BCHHHHHHHHHHHHTCC-EEEGG------GSCC
T ss_pred cccchhhhhhhhhcccCceeEEeecccccccccccccccccc-----ccccchHHHHHHHhCCC-ccccC------CCCe
Confidence 999999999999999999999999999999986654433222 12567777888888888 88888 8999
Q ss_pred ccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC-cccHHHHHHHHHHHhCCCcceEEccCC---------------C
Q 016208 282 VRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK-GRSVKEFVEACKKATGVNIKVEYLSRR---------------P 344 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~---------------~ 344 (393)
.++|+|++|+|+++..+++.+. ...+++||+++++ .+|+.|+++.+.+.+|........+.. .
T Consensus 219 ~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T d2blla1 219 KRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGY 298 (342)
T ss_dssp EEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC----------
T ss_pred eeeecccccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceecccccccccc
Confidence 9999999999999999998643 3345799998765 589999999999999876554333211 1
Q ss_pred CCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 345 ~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
.+.....+|++|++++|||+|++ +++|+|+++++||+++.+-
T Consensus 299 ~~~~~~~~d~~k~~~~lgw~P~~-sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 299 QDVEHRKPSIRNAHRCLDWEPKI-DMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp --CCCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHSCT
T ss_pred ccccccccCHHHHHHHHCCCcCC-CHHHHHHHHHHHHHhCcCC
Confidence 12345567999999999999999 9999999999999998764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-46 Score=349.89 Aligned_cols=314 Identities=26% Similarity=0.288 Sum_probs=253.7
Q ss_pred cEE-EEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCc-hhhhhh-hhh-cCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THV-LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNM-GAVKVL-QEL-FPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~I-lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
||| ||||||||||++|+++|+++||+|++++|...... ...+.+ ... .....+++++.+|+.|.+.+.+++.+.++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 478 99999999999999999999999999998543211 111111 110 11124789999999999999999988899
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC---cEEEEeecceeecCCCCCCCCCCCCCCCCChHHHH
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV---KTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA 202 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~s 202 (393)
++|+|+|+.........++...+++|+.+|.+++++|++.++ +++||+||.+|||.....+++|++|..|.++||.+
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~s 160 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA 160 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHH
Confidence 999999998766656677888899999999999999998864 48999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccc
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 282 (393)
|.++|++++.++++.+++++++||+++|||+....+. .+.+...+.....+..+ +..+| ++++.
T Consensus 161 K~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~---------~~~~~~~i~~~~~~~~~-~~~~g------~g~~~ 224 (347)
T d1t2aa_ 161 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFV---------TRKISRSVAKIYLGQLE-CFSLG------NLDAK 224 (347)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSH---------HHHHHHHHHHHHHTSCS-CEEES------CTTCE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCcc---------ccccceeeehhhcCCcc-eeecC------CCcce
Confidence 9999999999999899999999999999996442211 11344555666666666 77777 89999
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc---------------------
Q 016208 283 RDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS--------------------- 341 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~--------------------- 341 (393)
++|+|++|+++++..+++.... +.|+++.....++.+..+.+...++.........
T Consensus 225 r~~i~v~D~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (347)
T d1t2aa_ 225 RDWGHAKDYVEAMWLMLQNDEP---EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKY 301 (347)
T ss_dssp ECCEEHHHHHHHHHHHHHSSSC---CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGG
T ss_pred eeeeEecHHHHHHHHHhhcCCC---ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccC
Confidence 9999999999999999997654 4888999999999999999999998865432211
Q ss_pred CCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHh
Q 016208 342 RRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383 (393)
Q Consensus 342 ~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~ 383 (393)
.++.+...+.+|++|++++|||+|++ +++|+|+++++|+.+
T Consensus 302 ~rp~~~~~~~~d~skak~~Lgw~P~~-sl~e~i~~~I~~~~~ 342 (347)
T d1t2aa_ 302 YRPTEVDFLQGDCTKAKQKLNWKPRV-AFDELVREMVHADVE 342 (347)
T ss_dssp SCSSCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHH
T ss_pred CCCCCcCEeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHHHH
Confidence 12234445678999999999999999 999999999877544
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8e-45 Score=337.36 Aligned_cols=301 Identities=19% Similarity=0.264 Sum_probs=244.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+|||||||||||||++|+++|+++|+.|+++++.. ..|+.+.+.+.+++...++|+|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~v 58 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQV 58 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------------hccccCHHHHHHHHhhcCCCEE
Confidence 47999999999999999999999999998764321 1588999999999988899999
Q ss_pred EEcccccCcc-CCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCC-----CCChHHHH
Q 016208 129 MHFAAVAYVG-ESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQK-----PINPYGKA 202 (393)
Q Consensus 129 i~~A~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~-----p~~~Y~~s 202 (393)
+|+|+..... ....++...++.|+.+|.+++++|.+.++++|||+||.++||.....+++|+.+.. |.++|+.+
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~s 138 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIA 138 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHH
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHH
Confidence 9999765432 23446677889999999999999999999999999999999988777888875432 34579999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccc
Q 016208 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282 (393)
Q Consensus 203 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 282 (393)
|..+|++++.|+++.|+++++|||++||||++........... .............+.+ +.+.| ++.+.
T Consensus 139 K~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~g------~g~~~ 207 (315)
T d1e6ua_ 139 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP----ALLRRFHEATAQKAPD-VVVWG------SGTPM 207 (315)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHH----HHHHHHHHHHHHTCSE-EEEES------CSCCE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccce----eeeccchhhhhccCCc-eEEcC------CCceE
Confidence 9999999999999899999999999999997653322110000 0111222333444445 77777 88999
Q ss_pred cccccHHHHHHHHHHHHhcCC-------CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCCCCcceecCHH
Q 016208 283 RDYIDVTDLVDAHVLALANAK-------PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPS 355 (393)
Q Consensus 283 ~~~i~v~Dva~a~~~~l~~~~-------~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 355 (393)
++|+|++|+++++..+++... ......+|++.+...++.++++.+.+.+|.+..+.+.+..+.......+|++
T Consensus 208 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~s 287 (315)
T d1e6ua_ 208 REFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 287 (315)
T ss_dssp ECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCH
T ss_pred EEEEEeehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHH
Confidence 999999999999999886431 2234689999999999999999999999999888887777777777789999
Q ss_pred HHHhhCCCceeccCHHHHHHHHHHHHHhcc
Q 016208 356 KIRDELNWTARFTDLQGSLQIAWRWQKTHI 385 (393)
Q Consensus 356 k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~ 385 (393)
|++ +|||+|++ +++|+|+++++||++|+
T Consensus 288 k~k-~Lg~~p~~-~l~e~i~~ti~w~~~N~ 315 (315)
T d1e6ua_ 288 RLH-QLGWYHEI-SLEAGLASTYQWFLENQ 315 (315)
T ss_dssp HHH-HTTCCCCC-CHHHHHHHHHHHHHHTC
T ss_pred HHH-HcCCCCCC-CHHHHHHHHHHHHHHcC
Confidence 997 59999999 99999999999999874
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3e-44 Score=336.78 Aligned_cols=314 Identities=23% Similarity=0.261 Sum_probs=248.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC-Cchhhhhhhh-h-cCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NMGAVKVLQE-L-FPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|++||||||||||+||+++|+++||+|++++|.... .......+.. . ......+.++.+|+.+.+.+...++..++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 799999999999999999999999999999985432 1111111111 0 011246789999999999999999888999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-----CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-----KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGK 201 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~ 201 (393)
+|||+|+.........++...+..|+.++.+++++++.. ...++++.||..+|+... .+++|++|..|.+.|+.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E~~~~~p~~~Y~~ 160 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSETTPFHPRSPYAA 160 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCTTSCCCCCSHHHH
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCCCCCCCCcchhhH
Confidence 999999987665556788899999999999999998754 244788888888887665 47899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcc
Q 016208 202 AKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTC 281 (393)
Q Consensus 202 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 281 (393)
+|..+|.++..+++..+++++++||++||||+....+. .+.+...+........+ ....| ++.+
T Consensus 161 sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~---------~~~i~~~~~~~~~~~~~-~~~~g------~~~~ 224 (339)
T d1n7ha_ 161 SKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFV---------TRKITRALGRIKVGLQT-KLFLG------NLQA 224 (339)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSH---------HHHHHHHHHHHHHTSCC-CEEES------CTTC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCC---------cchhhHHHHHHhcCCCC-eEEeC------CCCc
Confidence 99999999999999999999999999999996432110 00222333344444444 55556 8999
Q ss_pred ccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcce--E--EccCCCCCCcceecCHHHH
Q 016208 282 VRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV--E--YLSRRPGDYAEVYSDPSKI 357 (393)
Q Consensus 282 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~--~--~~~~~~~~~~~~~~d~~k~ 357 (393)
.|+|+|++|+|+++..+++.+... .+++..+...++.++++.+.+.+|..... . ....++.+...+..|++|+
T Consensus 225 ~rd~~~v~D~a~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Ka 301 (339)
T d1n7ha_ 225 SRDWGFAGDYVEAMWLMLQQEKPD---DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 301 (339)
T ss_dssp EEECEEHHHHHHHHHHHHTSSSCC---EEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred cccceeeehHHHHHHHHHhcCCCC---ccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHH
Confidence 999999999999999999976543 66677888999999999999999976542 1 2223455666778899999
Q ss_pred HhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 358 RDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 358 ~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
++.|||+|++ +++|+|+++++|+++.
T Consensus 302 k~~LGw~P~~-~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 302 KEVLGWKPQV-GFEKLVKMMVDEDLEL 327 (339)
T ss_dssp HHHHCCCCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcCC-CHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999764
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.4e-43 Score=331.61 Aligned_cols=312 Identities=22% Similarity=0.348 Sum_probs=252.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMH 130 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~ 130 (393)
||||||||||||++|+++|+++|++|+++++..+.... ..+..+.. ..+++++.+|+.+.+.+.++++..++|+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~--~~~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGAT--DNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH--HHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccch--hHHHHhhc-cCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 79999999999999999999999999999875443321 11222211 2689999999999999999998778999999
Q ss_pred cccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecC-CCC----------------CCCCCCCCC
Q 016208 131 FAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGE-PDK----------------MPITESTPQ 193 (393)
Q Consensus 131 ~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~-~~~----------------~~~~E~~~~ 193 (393)
+|+.........++...+++|+.+|.+|+++|.+.+++++|+.||..+++. ... ....+..+.
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 999877655566788999999999999999999999877777666555433 221 223455667
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh-----CCCCcee
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR-----GIIPGLK 268 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 268 (393)
.|.+.|+.+|...|.+...+.+.+++...++|++.+||+...+... . ..++.++..+. .+++ +.
T Consensus 159 ~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~-~~ 227 (338)
T d1orra_ 159 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYD---Q-------GWVGWFCQKAVEIKNGINKP-FT 227 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTT---B-------CHHHHHHHHHHHHHTTCCCC-EE
T ss_pred ccccccccccchhhhhhhhhhhccCcccccccccceeecccccccc---c-------cccchhhHHHHHHHhccCCc-eE
Confidence 7889999999999999999999999999999999999876433211 1 34444443332 2445 88
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEec--CCCcccHHHHHHHHHHHhCCCcceEEccCCCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVG--TGKGRSVKEFVEACKKATGVNIKVEYLSRRPGD 346 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~--~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~ 346 (393)
++| +|.+.++|+|++|++++++.+++......+++||+. .+..+++.|+++.+.+.+|.+.++...+.++.+
T Consensus 228 ~~g------~g~~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~ 301 (338)
T d1orra_ 228 ISG------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESD 301 (338)
T ss_dssp EES------SSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSC
T ss_pred EeC------CCceeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCC
Confidence 888 899999999999999999999986543344799984 456799999999999999999988888877788
Q ss_pred CcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHh
Q 016208 347 YAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383 (393)
Q Consensus 347 ~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~ 383 (393)
...+.+|++|+++.|||+|++ +++|+|+++++|++.
T Consensus 302 ~~~~~~d~~k~~~~Lg~~p~~-sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 302 QRVFVADIKKITNAIDWSPKV-SAKDGVQKMYDWTSS 337 (338)
T ss_dssp CSEECBCCHHHHHHHCCCCCS-CHHHHHHHHHHHHHH
T ss_pred cCeeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHHHc
Confidence 888889999999999999999 999999999999985
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.7e-43 Score=336.18 Aligned_cols=325 Identities=23% Similarity=0.249 Sum_probs=244.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC-------------Cc---hhhhhhhhhcCCCCccEEEEccCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-------------NM---GAVKVLQELFPQPGQLQFIYADLGD 112 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~Dl~~ 112 (393)
+|||||||||||||++|+++|+++||+|++++...+. .. .....+..+. ..+++++.+|++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~Dl~d 78 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELYVGDICD 78 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEEESCTTS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc--CCCcEEEEccCCC
Confidence 4899999999999999999999999999999732111 11 1111111111 2578999999999
Q ss_pred HHHHHHHHhhCCCcEEEEcccccCccCCccC---hHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecceeecCCCCCCCC
Q 016208 113 AKAVNKIFAENAFDAVMHFAAVAYVGESTLE---PLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 113 ~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~---~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~~vyg~~~~~~~~ 188 (393)
.+.+.++++..++|+|||+||......+..+ +...+..|+.++.+++++|++.+++ ++|++||..+|+.... +..
T Consensus 79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~ 157 (393)
T d1i24a_ 79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIE 157 (393)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBC
T ss_pred HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccc
Confidence 9999999987789999999997654433333 4567889999999999999998755 6777888888875432 221
Q ss_pred --------------CCCCCCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCC----CCCcccccc
Q 016208 189 --------------ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEA----PHPELREHG 250 (393)
Q Consensus 189 --------------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~----~~~~~~~~~ 250 (393)
|..+..|.++|+.+|.++|.++..++++.+++++++||++||||+........ ........+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T d1i24a_ 158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 237 (393)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccc
Confidence 22367789999999999999999999999999999999999999754221000 000011122
Q ss_pred cchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEe--cCCCcccHHHHHHHHH
Q 016208 251 RISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNV--GTGKGRSVKEFVEACK 328 (393)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni--~~~~~~s~~el~~~i~ 328 (393)
.++..++.....+++ +.++| ++.+.|||+|++|+++++..++++..... .|++ ++++.+|+.++++.+.
T Consensus 238 ~~i~~~~~~~~~~~~-~~i~g------~~~~~rd~v~v~D~~~a~~~~~~~~~~~g--~~~~~~~~~~~~si~el~~~i~ 308 (393)
T d1i24a_ 238 TALNRFCVQAAVGHP-LTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAG--EFRVFNQFTEQFSVNELASLVT 308 (393)
T ss_dssp CHHHHHHHHHHHTCC-EEEET------TSCCEEEEEEHHHHHHHHHHHHHSCCCTT--CEEEEEECSEEEEHHHHHHHHH
T ss_pred cchhhhhHHhhcCCe-eEEee------ecccccccccccchHHHHHHHHHhhcccc--eeeeecCCCCeeEHHHHHHHHH
Confidence 467778888888888 99999 99999999999999999999999765542 3333 3456799999999998
Q ss_pred HHh---CCCcceEEc--cCCCCCCcceecCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccCC
Q 016208 329 KAT---GVNIKVEYL--SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387 (393)
Q Consensus 329 ~~~---g~~~~~~~~--~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~~ 387 (393)
+.. +.++..... +..+.+...+..|++|++ +|||+|++ +++++++++++|++++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LGw~P~~-~~~~~i~~~~~~~~~~k~~ 370 (393)
T d1i24a_ 309 KAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHY-LSDSLLDSLLNFAVQFKDR 370 (393)
T ss_dssp HHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCC-CCHHHHHHHHHHHHHTGGG
T ss_pred HHHHhhCCCcceeeccCCCCCCCccEecCCHHHHH-HcCCcccc-CHHHHHHHHHHHHHHHHHh
Confidence 875 445454433 234455566778999997 59999999 9999999999999887653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=1.5e-40 Score=313.43 Aligned_cols=313 Identities=21% Similarity=0.235 Sum_probs=247.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.|||||||||||||++|++.|+++|++|++++|.........+..+ ...+++++.+|++|++.+.++++...+|+|
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~----~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v 83 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPEIV 83 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh----cccCCeEEEeeccChHhhhhhhhhchhhhh
Confidence 4899999999999999999999999999999997665543322221 135899999999999999999988899999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCC-CCCCCCCCCCCCCCChHHHHHHHH
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEP-DKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~-~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|+|+......+...+...+.+|+.++.+++++|.+.+ ...+++.||..+++.. ...+.+|+.+..|.++|+.+|...
T Consensus 84 ~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~ 163 (356)
T d1rkxa_ 84 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCA 163 (356)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHH
T ss_pred hhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccc
Confidence 99999876655667888999999999999999999876 4455666655555433 345677888899999999999999
Q ss_pred HHHHHHHHhh---------CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCC
Q 016208 207 EDIIIDFSKT---------TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTA 277 (393)
Q Consensus 207 E~~~~~~~~~---------~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 277 (393)
|..+..++.. .++.++++||+++|||++.+. ..+++.++.....+.+ + +++
T Consensus 164 e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~------------~~~i~~~~~~~~~~~~-~-~~~------ 223 (356)
T d1rkxa_ 164 ELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL------------DRIVPDILRAFEQSQP-V-IIR------ 223 (356)
T ss_dssp HHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS------------SCHHHHHHHHHHTTCC-E-ECS------
T ss_pred hhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchh------------hHHHHHHHHHHhCCCc-e-EEe------
Confidence 9999877653 578899999999999975321 1577888888877665 3 445
Q ss_pred CCccccccccHHHHHHHHHHHHhcCCC-----CCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc-CCCCCCccee
Q 016208 278 DGTCVRDYIDVTDLVDAHVLALANAKP-----GKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS-RRPGDYAEVY 351 (393)
Q Consensus 278 ~g~~~~~~i~v~Dva~a~~~~l~~~~~-----~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~-~~~~~~~~~~ 351 (393)
.+.+.++++|++|+++++..+++.... ..+..++.+.+..+++.++++.+.+.++...+..... ..+.+...+.
T Consensus 224 ~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
T d1rkxa_ 224 NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLK 303 (356)
T ss_dssp CTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCC
T ss_pred eccccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeee
Confidence 788999999999999999998885322 1112333445667999999999999999887765433 3345566778
Q ss_pred cCHHHHHhhCCCceeccCHHHHHHHHHHHHHhccC
Q 016208 352 SDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHIN 386 (393)
Q Consensus 352 ~d~~k~~~~lG~~p~~~~~~e~l~~~~~~~~~~~~ 386 (393)
+|++|++++|||+|++ +++++|+++++||++...
T Consensus 304 ~d~skak~~LGw~P~~-~l~egi~~ti~wyk~~~~ 337 (356)
T d1rkxa_ 304 LDCSKAKMQLGWHPRW-NLNTTLEYIVGWHKNWLS 337 (356)
T ss_dssp BCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHT
T ss_pred EcHHHHHHHHCCCcCC-CHHHHHHHHHHHHHHHHc
Confidence 9999999999999999 899999999999998543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.2e-40 Score=300.07 Aligned_cols=274 Identities=19% Similarity=0.164 Sum_probs=237.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||||||||||||++|+++|.++||+|++++|.. +|+.|.+++.++++..++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------------~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------------ccCCCHHHHHHHHHHcCCCEEE
Confidence 6899999999999999999999999999987631 5899999999999878999999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+|+......+...+......|+.....+++.+...+. .++++||..+|+.....+.+|.++..|...|+.+|...|++
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e~~ 136 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENF 136 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred eeccccccccccccchhhcccccccccccccccccccc-cccccccceeeeccccccccccccccchhhhhhhhhHHHHH
Confidence 99998877667778888899999999999999988765 79999999999998888999999999999999999999998
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+.. .+.+++++||+++||++. .+...++..+..+.+ +.+.+ ++.++++|++
T Consensus 137 ~~~----~~~~~~i~R~~~vyG~~~----------------~~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~v~ 187 (281)
T d1vl0a_ 137 VKA----LNPKYYIVRTAWLYGDGN----------------NFVKTMINLGKTHDE-LKVVH--------DQVGTPTSTV 187 (281)
T ss_dssp HHH----HCSSEEEEEECSEESSSS----------------CHHHHHHHHHHHCSE-EEEES--------SCEECCEEHH
T ss_pred HHH----hCCCccccceeEEeCCCc----------------ccccchhhhhccCCc-eeecC--------Cceeccchhh
Confidence 877 578999999999999963 566777777777766 66643 5789999999
Q ss_pred HHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccCCCC-----CCcceecCHHHHHhhCCCc
Q 016208 290 DLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG-----DYAEVYSDPSKIRDELNWT 364 (393)
Q Consensus 290 Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-----~~~~~~~d~~k~~~~lG~~ 364 (393)
|+++++..+++.... ++||+++++.+|+.|+++.+++.+|.+.++...+.... ++....+|++|+++.|||+
T Consensus 188 D~~~~~~~~~~~~~~---g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~ 264 (281)
T d1vl0a_ 188 DLARVVLKVIDEKNY---GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDI 264 (281)
T ss_dssp HHHHHHHHHHHHTCC---EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCC
T ss_pred hhhhhhhhhhhhccc---CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCC
Confidence 999999999987654 49999999999999999999999999988766543221 2233458999999999999
Q ss_pred eeccCHHHHHHHHHHHHH
Q 016208 365 ARFTDLQGSLQIAWRWQK 382 (393)
Q Consensus 365 p~~~~~~e~l~~~~~~~~ 382 (393)
|+ +|+|+|+++++|++
T Consensus 265 ~~--~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 265 TR--EWKESLKEYIDLLQ 280 (281)
T ss_dssp CC--BHHHHHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHHhc
Confidence 87 79999999999986
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=2.9e-38 Score=296.38 Aligned_cols=305 Identities=17% Similarity=0.122 Sum_probs=221.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+++|||||||||||++|+++|+++|++|+++.|+..+... ...............++.+|+.+.+.+.+++ .++|
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~~ 85 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN-LQKRWDAKYPGRFETAVVEDMLKQGAYDEVI--KGAA 85 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHHSTTTEEEEECSCTTSTTTTTTTT--TTCS
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH-HHHhhhccccccccEEEeccccchhhhhhhc--ccch
Confidence 446899999999999999999999999999999885322211 1112222222234456889999999999998 7999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeecceeecCCC----CCC---------------
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVKTLIYSSTCATYGEPD----KMP--------------- 186 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~V~~SS~~vyg~~~----~~~--------------- 186 (393)
+|+|+|+.... ...+...+..|+.++.+++++|.+. +++++||+||.++++... ...
T Consensus 86 ~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 162 (342)
T d1y1pa1 86 GVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred hhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccc
Confidence 99999997653 4556778899999999999999987 689999999976543221 111
Q ss_pred -CCCCCCCCCCChHHHHHHHHHHHHHHHHhhC--CCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 -ITESTPQKPINPYGKAKKMSEDIIIDFSKTT--NMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 -~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
..|+.+..|.++|+.+|..+|++++.|++++ +++++++||+.+|||...+... ...+..++..+.++
T Consensus 163 ~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~----------~~~~~~~~~~l~~g 232 (342)
T d1y1pa1 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQ----------SGSTSGWMMSLFNG 232 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTC----------CCHHHHHHHHHHTT
T ss_pred cccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCcccc----------ccchHHHHHHHHcC
Confidence 2455566778899999999999999998774 5788999999999986432111 13455666666666
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCC-CcceEEccC
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-NIKVEYLSR 342 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~ 342 (393)
.. .... .+.+.++|+|++|+|++++.+++++... +.|++++++.+++.|++++|.+.++. .++.. .+.
T Consensus 233 ~~-~~~~-------~~~~~~~~v~v~Dva~~~i~~l~~~~~~--g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~-~~~ 301 (342)
T d1y1pa1 233 EV-SPAL-------ALMPPQYYVSAVDIGLLHLGCLVLPQIE--RRRVYGTAGTFDWNTVLATFRKLYPSKTFPAD-FPD 301 (342)
T ss_dssp CC-CHHH-------HTCCSEEEEEHHHHHHHHHHHHHCTTCC--SCEEEECCEEECHHHHHHHHHHHCTTSCCCCC-CCC
T ss_pred Cc-Cccc-------CCccceeeeeHHHHHHHHHHhhcCcccc--ceEEEEcCCceEHHHHHHHHHHHcCCCcCCcc-CCc
Confidence 54 2222 3556689999999999999999976654 46778889999999999999998843 22221 222
Q ss_pred CCCCCcceec-CHHHHHhhCCCceeccCHHHHHHHHHH
Q 016208 343 RPGDYAEVYS-DPSKIRDELNWTARFTDLQGSLQIAWR 379 (393)
Q Consensus 343 ~~~~~~~~~~-d~~k~~~~lG~~p~~~~~~e~l~~~~~ 379 (393)
.......... ...+..+.|||.+.+ +++|+|+++++
T Consensus 302 ~~~~~~~~~~~~s~~~~k~lg~~~~~-~lee~i~d~I~ 338 (342)
T d1y1pa1 302 QGQDLSKFDTAPSLEILKSLGRPGWR-SIEESIKDLVG 338 (342)
T ss_dssp CCCCCCEECCHHHHHHHHHTTCCSCC-CHHHHHHHHHC
T ss_pred cCcccccccchHHHHHHHHcCCCCCc-CHHHHHHHHHH
Confidence 2222211111 123444569999988 89999999875
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.8e-37 Score=281.71 Aligned_cols=296 Identities=22% Similarity=0.294 Sum_probs=209.4
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CCCc
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NAFD 126 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~d 126 (393)
|||||||||||++|+++|+++|+ +|+++++..+.... ..+.+ ....|..+.+.+...... ..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNLVD---------LNIADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHHHT---------SCCSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh--hcccc---------cchhhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999995 89998764432211 11111 111233333333322211 5689
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|+|+|+..... ..+.......|+.++.+++++++..++ ++|+.||..+|+........|+.+..|.+.|+.+|..+
T Consensus 71 ~i~~~aa~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~~ 147 (307)
T d1eq2a_ 71 AIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLF 147 (307)
T ss_dssp EEEECCSCCCTT--CCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHH
T ss_pred hhhhhccccccc--ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccchh
Confidence 999999866543 456677888999999999999999998 57788887888777666777778888999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|.++..++++.+++++++||+++|||+.... ...+..+..+...+..++......| ++...++|+
T Consensus 148 e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~r~~~ 212 (307)
T d1eq2a_ 148 DEYVRQILPEANSQIVGFRYFNVYGPREGHK---------GSMASVAFHLNTQLNNGESPKLFEG------SENFKRDFV 212 (307)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCGGG---------GGGSCHHHHHHHHHHC-------------------CBCEE
T ss_pred hhhccccccccccccccccceeEeecccccc---------ccccccccccccccccccceeeecC------ccceeeeee
Confidence 9999999999999999999999999974321 1112456677777777765344455 788999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccC----CCCCCcceecCHHHHHhhCC
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR----RPGDYAEVYSDPSKIRDELN 362 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~d~~k~~~~lG 362 (393)
|++|++.++..+++.... +.||+++++..|+.|+++++.+..+. ..+...+. ..........|++|+++.+|
T Consensus 213 ~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~ 288 (307)
T d1eq2a_ 213 YVGDVADVNLWFLENGVS---GIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288 (307)
T ss_dssp EHHHHHHHHHHHHHHCCC---EEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTC
T ss_pred ecccHHHHHHHHhhhccc---cccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHC
Confidence 999999999999987543 59999999999999999999877653 22222221 11223344569999999999
Q ss_pred CceeccCHHHHHHHHHHHH
Q 016208 363 WTARFTDLQGSLQIAWRWQ 381 (393)
Q Consensus 363 ~~p~~~~~~e~l~~~~~~~ 381 (393)
|+|++ +++|+|+++++|+
T Consensus 289 ~~p~~-sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 289 DKPFK-TVAEGVTEYMAWL 306 (307)
T ss_dssp CCCCC-CHHHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHHHHhC
Confidence 99999 9999999999995
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-36 Score=275.94 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=220.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||||||||||||++|++.|.++|+.|. +++.... +.+|+.|.+.+.+++++.+||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~--------------------~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKE--------------------FCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSS--------------------SCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcc--------------------ccCcCCCHHHHHHHHHHcCCCEEE
Confidence 6899999999999999999999987554 4442221 227999999999999878899999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDI 209 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~ 209 (393)
|+||...+..+..++...+..|+.++.+++++|++.++ +++++||..+|+.....+.+|+.+..|.+.|+.+|..+|.+
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~~ 138 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKA 138 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchHhhhhhhhhhh
Confidence 99998877777888999999999999999999998886 79999999999988888999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHH
Q 016208 210 IIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVT 289 (393)
Q Consensus 210 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 289 (393)
+..+. ....++|++..|+.... .....+...+....+ +.+. +...++++|+.
T Consensus 139 ~~~~~----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~ 190 (298)
T d1n2sa_ 139 LQDNC----PKHLIFRTSWVYAGKGN---------------NFAKTMLRLAKERQT-LSVI--------NDQYGAPTGAE 190 (298)
T ss_dssp HHHHC----SSEEEEEECSEECSSSC---------------CHHHHHHHHHHHCSE-EEEE--------CSCEECCEEHH
T ss_pred HHhhh----cccccccccceeeccCC---------------ccchhhhhhhcccce-eecc--------cceeecccccc
Confidence 88753 34566776766654321 445555566666555 5553 45678899999
Q ss_pred HHHHHHHHHHhc--CCCCCcceEEecCCCcccHHHHHHHHHHHhCC---Ccce---EEccCC-----CCCCcceecCHHH
Q 016208 290 DLVDAHVLALAN--AKPGKVGIYNVGTGKGRSVKEFVEACKKATGV---NIKV---EYLSRR-----PGDYAEVYSDPSK 356 (393)
Q Consensus 290 Dva~a~~~~l~~--~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~---~~~~---~~~~~~-----~~~~~~~~~d~~k 356 (393)
|+++++..++.. .....+++||+++++.+++.++++.+.+..+. .... ...+.. ..++....+|++|
T Consensus 191 d~~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K 270 (298)
T d1n2sa_ 191 LLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEK 270 (298)
T ss_dssp HHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHH
T ss_pred hHHHHHHHHHhhhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHH
Confidence 999999887762 12223479999999999999999998776532 2221 111111 1123344689999
Q ss_pred HHhhCCCceeccCHHHHHHHHHHHHHhc
Q 016208 357 IRDELNWTARFTDLQGSLQIAWRWQKTH 384 (393)
Q Consensus 357 ~~~~lG~~p~~~~~~e~l~~~~~~~~~~ 384 (393)
+++.|||+|+ +|+++|+++++++...
T Consensus 271 ~~~~~~~~~~--~~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 271 FQRNFDLILP--QWELGVKRMLTEMFTT 296 (298)
T ss_dssp HHHHHTCCCC--BHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCCC--cHHHHHHHHHHHHHhh
Confidence 9999999987 7999999999998764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-28 Score=212.73 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=157.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|.|+||+||||||+||++++++|+++||+|+++.|...+.... ...+++++.+|+.|.+++.+++ .++|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al--~~~d 69 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTV--AGQD 69 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHH--TTCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHh--cCCC
Confidence 6789999999999999999999999999999999864432211 1367999999999999999999 8999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+|||++|....... .+.+..++.++++++++++++|+|++||.++++.... .+.....|...|..+
T Consensus 70 ~vi~~~g~~~~~~~-------~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~-------~~~~~~~~~~~~~~~ 135 (205)
T d1hdoa_ 70 AVIVLLGTRNDLSP-------TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-------VPPRLQAVTDDHIRM 135 (205)
T ss_dssp EEEECCCCTTCCSC-------CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-------SCGGGHHHHHHHHHH
T ss_pred EEEEEeccCCchhh-------hhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc-------ccccccccchHHHHH
Confidence 99999986532211 1356789999999999999999999999888765432 122345789999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|+++++ .+++++++||+.+++....+ . ..+.. ++.....+|
T Consensus 136 e~~l~~----~~~~~tiirp~~~~~~~~~~---------------------------~--~~~~~------~~~~~~~~i 176 (205)
T d1hdoa_ 136 HKVLRE----SGLKYVAVMPPHIGDQPLTG---------------------------A--YTVTL------DGRGPSRVI 176 (205)
T ss_dssp HHHHHH----TCSEEEEECCSEEECCCCCS---------------------------C--CEEES------SSCSSCSEE
T ss_pred HHHHHh----cCCceEEEecceecCCCCcc---------------------------c--EEEee------CCCCCCCcC
Confidence 988876 79999999999998753221 1 12222 456667899
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEec
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVG 313 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~ 313 (393)
+++|+|++++.+++++... ++.+.++
T Consensus 177 ~~~DvA~~~~~~l~~~~~~-g~~~~~s 202 (205)
T d1hdoa_ 177 SKHDLGHFMLRCLTTDEYD-GHSTYPS 202 (205)
T ss_dssp EHHHHHHHHHHTTSCSTTT-TCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCC-CEEEecC
Confidence 9999999999999876643 3566564
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=1e-29 Score=233.90 Aligned_cols=247 Identities=15% Similarity=0.096 Sum_probs=184.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchh-hhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGA-VKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+++||||||||||||++|+++|+++||+|++++|........ ...+..+. ..+++++.+|+.+.+.+.+++ .+++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~--~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDAL--KQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHH--TTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhc--cCcc
Confidence 347899999999999999999999999999999865443221 22222221 257999999999999999999 8999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
+++|+++.... ..|..++.+++++|.+.+..++|+.||.++++. .+..+..|...|...|..+
T Consensus 78 ~~~~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~------~~~~~~~~~~~~~~~~~~~ 140 (312)
T d1qyda_ 78 VVISALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD------IMEHALQPGSITFIDKRKV 140 (312)
T ss_dssp EEEECCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT------SCCCCCSSTTHHHHHHHHH
T ss_pred hhhhhhhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCC------CcccccchhhhhhHHHHHH
Confidence 99999875432 134556778899999888778888888666533 2344566778888888888
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
+++... .+++++++||+.+||+..... ............. +.+++ ++++.++|+
T Consensus 141 ~~~~~~----~~~~~~i~r~~~~~g~~~~~~---------------~~~~~~~~~~~~~-~~~~~------~g~~~~~~i 194 (312)
T d1qyda_ 141 RRAIEA----ASIPYTYVSSNMFAGYFAGSL---------------AQLDGHMMPPRDK-VLIYG------DGNVKGIWV 194 (312)
T ss_dssp HHHHHH----TTCCBCEEECCEEHHHHTTTS---------------SCTTCCSSCCSSE-ECCBT------TSCSEEEEE
T ss_pred HHhhcc----cccceEEeccceeecCCccch---------------hhHHHHhhhcccc-ccccc------cccccccee
Confidence 876555 799999999999999753311 1111111112222 55555 899999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
|++|+|++++.++..+.......|++++++.+|++|+++.+++.+|.+.+....+
T Consensus 195 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 195 DEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp CHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred eHHHHHHHHHHHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 9999999999999876554434577777788999999999999999988766544
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-29 Score=220.57 Aligned_cols=209 Identities=13% Similarity=0.060 Sum_probs=162.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|.+++|||||||||||++|+++|+++|. +|++++|......... ...+....+|+.+.+++..++ .+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~---------~~~i~~~~~D~~~~~~~~~~~--~~ 80 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---------YKNVNQEVVDFEKLDDYASAF--QG 80 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---------GGGCEEEECCGGGGGGGGGGG--SS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc---------cceeeeeeecccccccccccc--cc
Confidence 4457999999999999999999999994 8999998654322111 157788889999999999888 89
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHH
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKK 204 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 204 (393)
+|+|||+++.... ........++|+.++.+++++|.+.++++||++||..+++. +.++|+.+|.
T Consensus 81 ~d~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~-------------~~~~Y~~~K~ 144 (232)
T d2bkaa1 81 HDVGFCCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-------------SNFLYLQVKG 144 (232)
T ss_dssp CSEEEECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHH
T ss_pred ccccccccccccc---ccchhhhhhhcccccceeeecccccCccccccCCccccccC-------------ccchhHHHHH
Confidence 9999999986532 34456678899999999999999999999999999877533 3468999999
Q ss_pred HHHHHHHHHHhhCCC-cEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCcccc
Q 016208 205 MSEDIIIDFSKTTNM-AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283 (393)
Q Consensus 205 ~~E~~~~~~~~~~g~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 283 (393)
.+|+.+.+ .++ +++||||+.+||++... .+...+........+ .+....
T Consensus 145 ~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~--------------~~~~~~~~~~~~~~~------------~~~~~~ 194 (232)
T d2bkaa1 145 EVEAKVEE----LKFDRYSVFRPGVLLCDRQES--------------RPGEWLVRKFFGSLP------------DSWASG 194 (232)
T ss_dssp HHHHHHHT----TCCSEEEEEECCEEECTTGGG--------------SHHHHHHHHHHCSCC------------TTGGGG
T ss_pred Hhhhcccc----ccccceEEecCceeecCCCcC--------------cHHHHHHHHHhhccC------------CcccCC
Confidence 99998877 455 58999999999986431 344455555544433 344555
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcceEEecC
Q 016208 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGT 314 (393)
Q Consensus 284 ~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~ 314 (393)
..||++|+|++++.++..+... +.+.+.+
T Consensus 195 ~~I~~~dvA~a~i~~~~~~~~~--~~~i~~~ 223 (232)
T d2bkaa1 195 HSVPVVTVVRAMLNNVVRPRDK--QMELLEN 223 (232)
T ss_dssp TEEEHHHHHHHHHHHHTSCCCS--SEEEEEH
T ss_pred CeEEHHHHHHHHHHHHhcCccC--CeEEEcH
Confidence 6799999999999988876554 4676653
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.96 E-value=1.1e-29 Score=232.56 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=177.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchh--hhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGA--VKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+|||||||||||||++|+++|+++|++|++++|........ ...+..+. ..+++++.+|+.+...+.+.+ .+++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~--~~~~ 78 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAV--KNVD 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHH--HTCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhh--hhce
Confidence 58999999999999999999999999999999965543322 12222222 257899999999999999999 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
.|+|+++... ..++.++++++...+++++++.||..... ++.....+...+...+...
T Consensus 79 ~vi~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~~~~~~~~~ 136 (307)
T d1qyca_ 79 VVISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFPSEFGNDV-------DNVHAVEPAKSVFEVKAKV 136 (307)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCSEEECSCCSSCT-------TSCCCCTTHHHHHHHHHHH
T ss_pred eeeecccccc---------------cchhhHHHHHHHHhccccceeeecccccc-------ccccccccccccccccccc
Confidence 9999987542 33456788899988888899888854432 2223334455666666666
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
+.++.. .+++++++||+.+||+.... +. .+.....++.. +.+.+ .+++.++|+
T Consensus 137 ~~~~~~----~~~~~~i~r~~~v~g~~~~~---------------~~-~~~~~~~~~~~-~~~~~------~~~~~~~~i 189 (307)
T d1qyca_ 137 RRAIEA----EGIPYTYVSSNCFAGYFLRS---------------LA-QAGLTAPPRDK-VVILG------DGNARVVFV 189 (307)
T ss_dssp HHHHHH----HTCCBEEEECCEEHHHHTTT---------------TT-CTTCSSCCSSE-EEEET------TSCCEEEEE
T ss_pred cchhhc----cCCCceecccceecCCCccc---------------hh-hhhhhhhhccc-ceeee------cccccccCC
Confidence 666655 78999999999999985331 11 11111222233 45555 789999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEcc
Q 016208 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLS 341 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 341 (393)
|++|+|++++.+++.+.......|++++++.+|+.|+++.+.+.+|.+.+....+
T Consensus 190 ~v~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 190 KEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp CHHHHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred cHHHHHHHHHHHhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 9999999999999876554434677788899999999999999999988776544
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=9.7e-26 Score=199.45 Aligned_cols=230 Identities=15% Similarity=0.153 Sum_probs=161.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCe--EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYR--VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.|++|||||||||||++|+++|+++|++ |+.+.|..... ..+ ..+++++.+|+.+.+.+.+++ .++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~-------~~~---~~~~~~~~~d~~~~~~~~~~~--~~~ 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK-------EKI---GGEADVFIGDITDADSINPAF--QGI 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH-------HHT---TCCTTEEECCTTSHHHHHHHH--TTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH-------Hhc---cCCcEEEEeeecccccccccc--ccc
Confidence 5789999999999999999999999976 45555532211 111 358899999999999999999 789
Q ss_pred cEEEEcccccCccC-------------CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE-------------STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 126 d~Vi~~A~~~~~~~-------------~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
|+|||+|+...... ..........+|+.++.++++.+.....+.+.+.|+...+..... ..
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~ 143 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP------LN 143 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG------GG
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc------cc
Confidence 99999998654321 122345567789999999999999988889999888555432111 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
..+...|...+...+.+.. ..+++++++||+.+||+..... .. +...+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~----~~~~~~~ilRp~~v~g~~~~~~-------------~~--------------~~~~~~ 192 (252)
T d2q46a1 144 KLGNGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVR-------------EL--------------LVGKDD 192 (252)
T ss_dssp GGGGCCHHHHHHHHHHHHH----HSSSCEEEEEECEEECSCTTSS-------------CE--------------EEESTT
T ss_pred cccccchhhhhhhhhhhhh----cccccceeecceEEECCCcchh-------------hh--------------hhccCc
Confidence 1224456666665555444 4899999999999999863210 00 000000
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC---cccHHHHHHHHHHHh
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK---GRSVKEFVEACKKAT 331 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~---~~s~~el~~~i~~~~ 331 (393)
. ......++||++|+|++++.+++.+... +++|||+++. ..+++++.+.+.+..
T Consensus 193 ~----~~~~~~~~i~~~Dva~a~~~~l~~~~~~-g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 193 E----LLQTDTKTVPRADVAEVCIQALLFEEAK-NKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp G----GGGSSCCEEEHHHHHHHHHHHTTCGGGT-TEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred c----cccCCCCeEEHHHHHHHHHHHhCCcccc-CcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 0 1233457999999999999999876543 4799998643 456777777665543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=3e-25 Score=192.87 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=136.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||||||||||||++|+++|+++|+ +|+++.|...... .. +..+..|..++...+. ..+|+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~-------------~~---~~~~~~d~~~~~~~~~-~~~d~ 65 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-------------PR---LDNPVGPLAELLPQLD-GSIDT 65 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC-------------TT---EECCBSCHHHHGGGCC-SCCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc-------------cc---ccccccchhhhhhccc-cchhe
Confidence 8999999999999999999999998 5666665332211 22 2344555555544432 56899
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSE 207 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E 207 (393)
|||++|..... ........+.|+.++.+++++|++.+++++|++||.++++. +.+.|+.+|..+|
T Consensus 66 vi~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~-------------~~~~y~~~K~~~E 130 (212)
T d2a35a1 66 AFCCLGTTIKE--AGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK-------------SSIFYNRVKGELE 130 (212)
T ss_dssp EEECCCCCHHH--HSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHHHH
T ss_pred eeeeeeeeccc--cccccccccchhhhhhhcccccccccccccccccccccccc-------------cccchhHHHHHHh
Confidence 99999865332 34556788999999999999999999999999999877643 3578999999999
Q ss_pred HHHHHHHhhCCC-cEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 208 DIIIDFSKTTNM-AVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 208 ~~~~~~~~~~g~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
+.+.+ .++ +++|+||+.|||+.... .+...+ ..+...+ ....+..|
T Consensus 131 ~~l~~----~~~~~~~I~Rp~~v~G~~~~~--------------~~~~~~------~~~~~~~---------~~~~~~~i 177 (212)
T d2a35a1 131 QALQE----QGWPQLTIARPSLLFGPREEF--------------RLAEIL------AAPIARI---------LPGKYHGI 177 (212)
T ss_dssp HHHTT----SCCSEEEEEECCSEESTTSCE--------------EGGGGT------TCCCC-------------CHHHHH
T ss_pred hhccc----cccccceeeCCcceeCCcccc--------------cHHHHH------HHHHhhc---------cCCCCcEE
Confidence 98865 455 69999999999986431 111111 1110111 11234569
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 016208 287 DVTDLVDAHVLALANAKP 304 (393)
Q Consensus 287 ~v~Dva~a~~~~l~~~~~ 304 (393)
|++|+|++++.+++++..
T Consensus 178 ~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 178 EACDLARALWRLALEEGK 195 (212)
T ss_dssp HHHHHHHHHHHHHTCCCS
T ss_pred EHHHHHHHHHHHHcCCCC
Confidence 999999999999987654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=2e-23 Score=195.22 Aligned_cols=241 Identities=10% Similarity=-0.031 Sum_probs=170.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH-HHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA-VNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~~~d 126 (393)
+.|+|+|||||||||++|+++|+++||+|+++.|...+.. ...+.. ..+++++.+|+.|..+ +..++ .++|
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~--~~~~~~----~~~v~~~~gD~~d~~~~~~~a~--~~~~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA----IPNVTLFQGPLLNNVPLMDTLF--EGAH 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT----STTEEEEESCCTTCHHHHHHHH--TTCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhh--hhhhcc----cCCCEEEEeeCCCcHHHHHHHh--cCCc
Confidence 3489999999999999999999999999999998654322 112211 2689999999998655 66677 7889
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHH
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 206 (393)
++++...... ..++..+.+++++|.+++++++|+.||...... ....+..+|..+|...
T Consensus 74 ~~~~~~~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~---------~~~~~~~~~~~~k~~~ 132 (350)
T d1xgka_ 74 LAFINTTSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL---------YGPWPAVPMWAPKFTV 132 (350)
T ss_dssp EEEECCCSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG---------TSSCCCCTTTHHHHHH
T ss_pred eEEeeccccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccccc---------CCcccchhhhhhHHHH
Confidence 8887754321 135667889999999999888999998654322 2233456788899988
Q ss_pred HHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccc
Q 016208 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286 (393)
Q Consensus 207 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 286 (393)
|.+... .+++++++|++.+++......... +.. .....+...+.... +++..+.++
T Consensus 133 ~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~------~~~~~~~~i 188 (350)
T d1xgka_ 133 ENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPL-----------FQM---ELMPDGTFEWHAPF------DPDIPLPWL 188 (350)
T ss_dssp HHHHHT----SSSCEEEEEECEEGGGCBSSSCSS-----------CBE---EECTTSCEEEEESS------CTTSCEEEE
T ss_pred HHHHHh----hccCceeeeeceeecccccccccc-----------ccc---cccccccceeeecc------cCCCcceEE
Confidence 887665 789999999999887532211100 000 00111111122222 567778888
Q ss_pred cH-HHHHHHHHHHHhcCC-CCCcceEEecCCCcccHHHHHHHHHHHhCCCcceEEccC
Q 016208 287 DV-TDLVDAHVLALANAK-PGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSR 342 (393)
Q Consensus 287 ~v-~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~ 342 (393)
++ +|+++++..++..+. ...+++|++++ +.+|+.|+++++.+.+|+++.+...|.
T Consensus 189 ~~~~Dva~~v~~~l~~~~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 189 DAEHDVGPALLQIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred EeHHHHHHHHHHHHhCChhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 86 799999999987542 22346999975 579999999999999999988766653
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=6.7e-20 Score=160.93 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=155.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...|++|||||++.||++++++|+++|++|++++|..... .++..+.+|++|++++.+++++
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP--------------KGLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh--------------cCceEEEEecCCHHHHHHHHHHHHHh
Confidence 4558999999999999999999999999999999854322 4677899999999998877655
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||...... ...+....+++|+.++..+.+. +++.+..++|++||........
T Consensus 71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~---------- 140 (237)
T d1uzma1 71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG---------- 140 (237)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCc----------
Confidence 47999999999764432 2344566888999887766554 4556667999999976653222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+.-+... .+.....+...+..|
T Consensus 141 -~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~---------------~~~~~~~~~~~~~~p----- 199 (237)
T d1uzma1 141 -NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTR---------------ALDERIQQGALQFIP----- 199 (237)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------HSCHHHHHHHGGGCT-----
T ss_pred -ccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhh---------------ccCHHHHHHHHhcCC-----
Confidence 2568999999999999988776 6899999999998654210 122333344444333
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
..-+...+|+|+++++++... .--.|+++.+.+|
T Consensus 200 -----------l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 200 -----------AKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----------CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 122567899999999988643 2234578888655
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.1e-20 Score=166.10 Aligned_cols=226 Identities=14% Similarity=0.105 Sum_probs=164.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++|+++||||++.||++++++|+++|++|++++|.........+.++. ...++.++.+|+++++++.+++++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999998854433333333433 346788999999999998877655
Q ss_pred -CCCcEEEEcccccCccC---CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE---STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++||+||...... ...+....+++|+.++..+.+.+. +.+-.++|++||...+... .
T Consensus 86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~-----------~ 154 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN-----------I 154 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----------T
T ss_pred cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc-----------c
Confidence 58999999999765432 233455678899998887776553 4455689999996654322 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+.+.++.+ +|+++..|.||.|-.+.... .+.+...+...+..| +
T Consensus 155 ~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~--------------~~~~e~~~~~~~~~p-l---- 215 (255)
T d1fmca_ 155 NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS--------------VITPEIEQKMLQHTP-I---- 215 (255)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--------------TCCHHHHHHHHHTCS-S----
T ss_pred ccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhc--------------cCCHHHHHHHHhcCC-C----
Confidence 3578999999999999988877 68999999999986542110 222334444444443 2
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.-+..++|+|+++++++.... --.|+++.+.+|.
T Consensus 216 -----------~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 216 -----------RRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp -----------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -----------CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 125678999999999886432 2345789887664
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.85 E-value=8.3e-20 Score=161.89 Aligned_cols=225 Identities=13% Similarity=0.068 Sum_probs=163.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
....|.++||||++.||+++++.|+++|++|++++|.........+ ++.....++.++.+|+++++++.+++++
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~---~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD---EIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH---HHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH---HHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999885433333333 3333346788999999999999888765
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+|+....... ..+....+++|+.++..+.+++ ++.+-.++|++||...+-..+
T Consensus 84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~--------- 154 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV--------- 154 (251)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT---------
T ss_pred hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCC---------
Confidence 489999999997654432 2345667789988887776654 455667999999976653222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.+-.+... .+.....+...+..| +
T Consensus 155 --~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~---------------~~~~~~~~~~~~~~p-l-- 214 (251)
T d2c07a1 155 --GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD---------------KISEQIKKNIISNIP-A-- 214 (251)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------CCHHHHHHHHTTCT-T--
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccc---------------ccCHHHHHHHHhcCC-C--
Confidence 2568999999999999998776 6899999999999765322 333445555555544 1
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
.-+...+|+|+++++++.... --.|+++.+.+|
T Consensus 215 -------------~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 215 -------------GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp -------------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------------CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 125678999999999886432 234578888655
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.2e-19 Score=159.97 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=159.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...|+++||||++.||.+++++|+++|++|++++|... ...+..++ .++.++.+|+++++++.+++++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~---~l~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG---PLREAAEA-----VGAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHT-----TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHH-----cCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999988432 22222222 3678899999999999887765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||+..... ...+....+++|+.++..+.+++.. .+...++++||....+.
T Consensus 75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~------------ 142 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN------------ 142 (242)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC------------
T ss_pred cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCC------------
Confidence 47999999999775432 2334566888999998888776643 34556777777543322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...+.+.+.++.+ .|+++..+.||.+--+... ...........+..| +
T Consensus 143 ~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~---------------~~~~~~~~~~~~~~p-l--- 203 (242)
T d1ulsa_ 143 LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA---------------KVPEKVREKAIAATP-L--- 203 (242)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS---------------SSCHHHHHHHHHTCT-T---
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhh---------------cCCHHHHHHHHhcCC-C---
Confidence 23568999999999999988776 6899999999999765322 233344444444444 2
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
..+...+|+|+++++++.+. .--.|+++.+.+|..
T Consensus 204 ------------~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 204 ------------GRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp ------------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred ------------CCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 22557899999999988643 223457888876643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.8e-20 Score=164.03 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=160.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
++|+++||||++.||+++++.|+++|++|++++|.... +.+...++ ..++..+.+|+++++++.+++++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~---l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENG---AQAISDYL---GANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH---HHHHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 46899999999999999999999999999999875322 22222232 24678899999999998887765
Q ss_pred CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++||+||....... ..+....+++|+.++..+.+++ ++.+-.++|++||...+-..+
T Consensus 77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~----------- 145 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNG----------- 145 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------
T ss_pred CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCC-----------
Confidence 479999999997754432 3345567889999888877666 444557999999976653322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+--+... .+.+.....+.+..|
T Consensus 146 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~---------------~~~~~~~~~~~~~~p------ 204 (243)
T d1q7ba_ 146 GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTR---------------ALSDDQRAGILAQVP------ 204 (243)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH---------------TSCHHHHHHHHTTCT------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhh---------------hhhhhHHHHHHhcCC------
Confidence 2568999999999999988776 6899999999988543211 122333344444433
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+...+|+|+++++++... ..-.|+++.+.+|.
T Consensus 205 ----------l~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 205 ----------AGRLGGAQEIANAVAFLASDEAAYITGETLHVNGGM 240 (243)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ----------CCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 123567899999999998743 22345788886663
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1e-19 Score=160.54 Aligned_cols=224 Identities=17% Similarity=0.141 Sum_probs=160.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-C
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-N 123 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~ 123 (393)
....+|++|||||++.||.++++.|+++|++|++++|... .+.+...++ .++..+.+|++|.+++++++++ .
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~---~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g 75 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA---DLDSLVREC----PGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH---HHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhC
Confidence 3456799999999999999999999999999999988532 222222332 5788999999999999999876 4
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH-----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
++|++||+||...... ...+....+++|+.++..+.+.+. +.+..++|++||.......+
T Consensus 76 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~----------- 144 (244)
T d1pr9a_ 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT----------- 144 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-----------
T ss_pred CceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc-----------
Confidence 7999999999775433 234456678899988877766543 22456899999976643222
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.|.-+..... .--....+...+..| +
T Consensus 145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p-l---- 206 (244)
T d1pr9a_ 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQAT-------------WSDPHKAKTMLNRIP-L---- 206 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTT-------------SCSHHHHHHHHTTCT-T----
T ss_pred chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhh-------------ccChHHHHHHHhcCC-C----
Confidence 2568999999999999988876 689999999999875421100 001122334444433 1
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
..+...+|+|+++++++... .--.|+++.+.+|
T Consensus 207 -----------~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 207 -----------GKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp -----------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----------CCCcCHHHHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 23668999999999988643 2234578888655
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.84 E-value=4e-20 Score=164.56 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=161.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
+.|+++||||++.||+++++.|+++|++|++++|.....+...+.+.+... ..++..+.+|++|++++.+++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-DAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999998854433333333333222 35788899999999998877755
Q ss_pred CCCcEEEEcccccCcc-C----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVG-E----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~-~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||+.... . ...+....+++|+.++..+.+++ ++.+-.++|++||...+-..
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~----------- 150 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI----------- 150 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC-----------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC-----------
Confidence 5799999999965322 1 23445668889999988887765 34455689999996654221
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...+.+.+.++.+ .|+++..+.||.+..+.....+... .........+...+..|
T Consensus 151 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~-------~~~~~~~~~~~~~~~~p----- 218 (258)
T d1iy8a_ 151 GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQL-------DPENPRKAAEEFIQVNP----- 218 (258)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHH-------CTTCHHHHHHHHHTTCT-----
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhc-------CcccHHHHHHHHHhcCC-----
Confidence 12578999999999999988776 6899999999998653100000000 00011122233333322
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
..-+...+|+|+++++++... .--.|+++.+.+|..
T Consensus 219 -----------l~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 219 -----------SKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp -----------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred -----------CCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 223568899999999988643 223457888876654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.84 E-value=3e-19 Score=157.89 Aligned_cols=224 Identities=14% Similarity=0.114 Sum_probs=154.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|.++||||++.||+++++.|+++|++|++.+|... ....+.++.. ..++.++.+|+++++++.+++++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~---g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNL---GRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHc---CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988543 2223333332 46788999999999998877654
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||+..... ...+....+++|+.++..+.+++ ++.+-.++|++||.......
T Consensus 78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~----------- 146 (247)
T d2ew8a1 78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI----------- 146 (247)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-----------
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC-----------
Confidence 57999999999875432 23456668889998887777655 45566799999997654222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...+.+.+.++.+ .|+++..|.||.+-.+..+. .......+......
T Consensus 147 ~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~--------------~~~~~~~~~~~~~~------ 206 (247)
T d2ew8a1 147 EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA--------------SALSAMFDVLPNML------ 206 (247)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------------CTT------
T ss_pred cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccc--------------cccchhHHHHHHHh------
Confidence 22568999999999999988876 68999999999987653211 01111111111110
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
....-+...+|+|+++++++... .--.|+++.+.+|
T Consensus 207 ---------~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 207 ---------QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp ---------SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred ---------ccCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 01123557899999999988643 2234578888655
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=1.9e-19 Score=158.48 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=157.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
...|+++||||++.||+++++.|+++|++|++++|.... ..+...++ ..++.++.+|+++++++.+++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE---GKAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHh---hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 355899999999999999999999999999999885432 22223333 24788899999999998877755
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||....... ..+....+++|+.++..+.+.+ .+.+-.++|++||...+....
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~---------- 147 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV---------- 147 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccc----------
Confidence 479999999998754432 3345667889999988877654 344556899999976653222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.+-.+..+. ..+...
T Consensus 148 -~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~-----------------------~~~~~~----- 198 (244)
T d1nffa_ 148 -ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW-----------------------VPEDIF----- 198 (244)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT-----------------------SCTTCS-----
T ss_pred -cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh-----------------------hhHHHH-----
Confidence 2568999999999999988877 68999999999986542110 000000
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
......+...+|+|+++++++... .--.|+++.+.+|.
T Consensus 199 --------~~pl~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 199 --------QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 237 (244)
T ss_dssp --------CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --------hccccCCCCHHHHHHHHHHHhChhhCCCcCCEEEECCCe
Confidence 111223678999999999988643 22345789886664
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3e-19 Score=157.87 Aligned_cols=227 Identities=18% Similarity=0.078 Sum_probs=156.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
..+|+++||||++.||+++++.|+++|++|++++|... ...+...++ +++.++.+|++|++++.+++++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~---~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES---GGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHhc----CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 45699999999999999999999999999999987432 222222222 5788999999999998887765
Q ss_pred -CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ...+....+++|+.++..+.+++. +.+ .++|++||....-..+
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~~--------- 146 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQA--------- 146 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCCT---------
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCccccccccccccc---------
Confidence 47999999999653321 223356678899999888777654 334 5899999976653322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.|--+..+...... .-....+.......|
T Consensus 147 --~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~---------~~~~~~~~~~~~~~p---- 211 (250)
T d1ydea1 147 --QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALM---------PDPRASIREGMLAQP---- 211 (250)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTS---------SSHHHHHHHHHHTST----
T ss_pred --CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcC---------CCHHHHHHHHHhcCC----
Confidence 2578999999999999988876 6899999999998543100000000 001111222222222
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~ 317 (393)
..-+...+|+|+++++++.+..--.|+++.+.+|..
T Consensus 212 ------------l~R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 212 ------------LGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAE 247 (250)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTT
T ss_pred ------------CCCCCCHHHHHHHHHHHhCccCCCcCCeEEECCCcc
Confidence 123668999999999988643333567888866643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.83 E-value=2.1e-19 Score=160.08 Aligned_cols=230 Identities=11% Similarity=0.033 Sum_probs=160.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..+.|+++||||++.||.+++++|+++|++|++++|.... ...+..+++.....++.++.+|+++++++.+++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~--~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKED--EANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3566999999999999999999999999999999885422 12222222322345788999999999998887765
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCC-cEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKV-KTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+||...... ...+....+++|+.++..+.+.+ .+.+. ..+|++||.......
T Consensus 82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~--------- 152 (261)
T d1geea_ 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW--------- 152 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------
T ss_pred HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC---------
Confidence 48999999999875432 23345667889998877776554 44443 358889986554221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.....|+.+|...+.+.+.++.+ .|+++..|.||.|.-+.... ....+.......+..| +
T Consensus 153 --~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~-------------~~~~~~~~~~~~~~~p-l- 215 (261)
T d1geea_ 153 --PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAE-------------KFADPEQRADVESMIP-M- 215 (261)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHH-------------HHHSHHHHHHHHTTCT-T-
T ss_pred --ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhh-------------hcCCHHHHHHHHhcCC-C-
Confidence 22568999999999999988776 68999999999986542100 0001222333333333 1
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
.-+...+|+|+++++++... .--.|+++.+.+|..
T Consensus 216 --------------~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 216 --------------GYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp --------------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --------------CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCee
Confidence 22567899999999988643 223458998877653
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.83 E-value=1.5e-19 Score=160.72 Aligned_cols=225 Identities=19% Similarity=0.142 Sum_probs=160.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||+++++.|+++|++|++++|.. +.+.+...++ ..++.++.+|+++++++.+++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~---~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL---EAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH---HHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998743 2333334444 35788999999999999887765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hc-CCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AH-KVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ...+....+++|+.++..+.+++. +. +..++|++||...+-..
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~---------- 146 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE---------- 146 (256)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc----------
Confidence 58999999999765433 233456678899999888876543 22 34689999997654222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHH-----------HHH
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGA-----------CFD 258 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 258 (393)
.....|+.+|...+.+.+.++.+ .|+++..+.||.+-.+..+ ..... ..+
T Consensus 147 -~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~---------------~~~~~~~~~~~~~~~~~~~ 210 (256)
T d1k2wa_ 147 -ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD---------------GVDAKFADYENLPRGEKKR 210 (256)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHH---------------HHHHHHHHHHTCCTTHHHH
T ss_pred -ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhh---------------hhhhhhhhhccCChHHHHH
Confidence 22578999999999999888776 6899999999988765210 11111 111
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCccc
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGRS 319 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~s 319 (393)
.+....| ..-+...+|+|.++++++... .--.|+++.+.+|..+|
T Consensus 211 ~~~~~~P----------------lgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 211 QVGAAVP----------------FGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp HHHHHST----------------TSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHhcCC----------------CCCCcCHHHHHHHHHHHhCchhCCccCceEEECcchhhC
Confidence 1111111 123567899999999987643 22345789897776553
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=1.5e-19 Score=159.29 Aligned_cols=222 Identities=16% Similarity=0.151 Sum_probs=158.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
..+|++|||||++.||++++++|+++|++|++++|... .+.+...++ .++..+.+|+++++++.+++++ .++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~---~l~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS---DLVSLAKEC----PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 45699999999999999999999999999999987432 222222332 5788999999999999999876 369
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh-----cCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA-----HKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
|++|||||+..... ...+....+++|+.++..+.+.+.. .+..++|++||...+...+ ..
T Consensus 76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~-----------~~ 144 (242)
T d1cyda_ 76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP-----------NL 144 (242)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT-----------TB
T ss_pred eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCC-----------cc
Confidence 99999999765433 2334556788999998888775532 2345899999976543222 25
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...+.+.+.++.+ .|+++..+.||.+-.+..... .-.+.......+..|
T Consensus 145 ~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~p-------- 203 (242)
T d1cyda_ 145 ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKV-------------SADPEFARKLKERHP-------- 203 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHH-------------TCCHHHHHHHHHHST--------
T ss_pred ccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhh-------------cCCHHHHHHHHhcCC--------
Confidence 68999999999999998876 689999999998865421000 001222333333333
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+|+++++++... .--.|+++.+.+|
T Consensus 204 --------l~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG 238 (242)
T d1cyda_ 204 --------LRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 238 (242)
T ss_dssp --------TSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred --------CCCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcc
Confidence 123567899999999988643 2234578888655
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.83 E-value=5e-19 Score=157.39 Aligned_cols=231 Identities=13% Similarity=0.037 Sum_probs=159.9
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..++|++|||||++.||++++++|+++|++|++++|+....+...+.+ ......+.++.+|+++.+++.+++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~---~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW---REKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---HhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 345699999999999999999999999999999998543333333333 33346778899999999998776543
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
..+|++||+||...... ...+....+++|+.++..+.+++. +.+..++|++||.......+
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~-------- 151 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP-------- 151 (258)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT--------
T ss_pred HhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccc--------
Confidence 25899999999765432 234566688899999888776654 44667999999977653322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.+..+.....+... ..............|
T Consensus 152 ---~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~---------~~~~~~~~~~~~~~p--- 216 (258)
T d1ae1a_ 152 ---SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKN---------PHQKEEIDNFIVKTP--- 216 (258)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------------CHHHHHHHHHHST---
T ss_pred ---cchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhh---------hhhHHHHHHHHhcCC---
Confidence 2568999999999999998877 5899999999999776422111110 112223333333333
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+|+++++++.+. .--.|+.+.+.+|
T Consensus 217 -------------lgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 217 -------------MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 251 (258)
T ss_dssp -------------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------------CCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCC
Confidence 122678999999999999643 2234578878655
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=4.1e-19 Score=157.31 Aligned_cols=228 Identities=17% Similarity=0.072 Sum_probs=159.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||+++++.|+++|++|++++|......+..+.+.+.. ..++.++.+|+++++++.+++++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999885443333333332221 35688899999999998887765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||+..... ...+....+++|+.++..+.+.+. +.+-.++|++||...... +.
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~----------~~ 150 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV----------TM 150 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC----------CS
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc----------cC
Confidence 47999999999764432 233456678899999888777654 445569999988543211 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
.....|+.+|...+.+.+.++.+ .|+++..+.||.+-.+..... .-.+...+...+..| +
T Consensus 151 ~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~p-l--- 213 (251)
T d1vl8a_ 151 PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAV-------------FSDPEKLDYMLKRIP-L--- 213 (251)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHH-------------HTCHHHHHHHHHTCT-T---
T ss_pred ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhc-------------cCCHHHHHHHHhcCC-C---
Confidence 12568999999999999988776 689999999999866531100 001222334444333 1
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
..+..++|+|+++++++... .--.|+++.+.+|
T Consensus 214 ------------~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 214 ------------GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 247 (251)
T ss_dssp ------------SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------------CCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence 12456799999999988643 2234578888655
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.83 E-value=2.3e-19 Score=159.73 Aligned_cols=227 Identities=10% Similarity=-0.009 Sum_probs=146.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
....|+++||||++.||.+++++|+++|++|++++|.........+ ++.....++..+.+|+++++++.+++++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS---KWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999999885433333333 3323346789999999999988876654
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
..+|++||+||...... ...+....+++|+.++..+.+.+ ++.+-.++|++||....-..
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~--------- 152 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA--------- 152 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccc---------
Confidence 25899999999765432 23445668889999987777665 44456699999996654222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.....|+.+|...+.+.+.++.+ .|+++..|.||.|--+.... .+.....+...+..|
T Consensus 153 --~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~--------------~~~~~~~~~~~~~~p--- 213 (259)
T d1xq1a_ 153 --SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEA--------------VYDDEFKKVVISRKP--- 213 (259)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC--------------------------------------
T ss_pred --cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhh--------------hchHHHHHHHHhCCC---
Confidence 23578999999999999988777 68999999999986553211 111111122222222
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+...+|+|.++++++... .--.|+++.+.+|.
T Consensus 214 -------------l~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 214 -------------LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 249 (259)
T ss_dssp -----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCE
Confidence 122557899999999988643 22245788886664
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=3.7e-19 Score=157.23 Aligned_cols=226 Identities=15% Similarity=0.093 Sum_probs=156.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+|++|||||++.||.++++.|+++|++|++++|.... .+..++ .+..++++|+++.+++.+++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~----~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG----KEVAEA-----IGGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH----HHHHHH-----HTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHH-----cCCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999985432 222222 2567889999999988877665
Q ss_pred CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++|||||....... ..+....+++|+.++.++.+++. +.+-.++|++||...+... .
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~-----------~ 143 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE-----------Q 143 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC-----------T
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc-----------c
Confidence 589999999997654332 23455678899999888777664 4455699999997665322 2
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcC
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRG 271 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+-.+.....+... .-.....+...+..|
T Consensus 144 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~---------~~~~~~~~~~~~~~p------ 208 (248)
T d2d1ya1 144 ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALS---------PDPERTRRDWEDLHA------ 208 (248)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC-----------------CHHHHTTST------
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcC---------CCHHHHHHHHHhcCC------
Confidence 3578999999999999888777 6899999999988543100000000 000001111122111
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
...+...+|+|+++++++... .--.|+++.+.+|-..
T Consensus 209 ----------l~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ta 246 (248)
T d2d1ya1 209 ----------LRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTA 246 (248)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ----------CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCccc
Confidence 223668999999999988643 2234578988766443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.83 E-value=8.2e-19 Score=156.13 Aligned_cols=230 Identities=13% Similarity=0.022 Sum_probs=160.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+|+++||||++.||+++++.|+++|++|++.+|+..... +...++.....++.++.+|+++++++.+++++
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~---~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN---DCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999988543333 33333333346788899999999988876644
Q ss_pred --C-CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --N-AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~-~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
. ++|++||+||...... ...+....+++|+.++..+.+++ ++.+-.++|++||.......
T Consensus 82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~--------- 152 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV--------- 152 (259)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC---------
T ss_pred HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc---------
Confidence 2 5899999999765432 23345568889999887777665 44455699999996654222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.....|+.+|...+.+.+.++.+ .|+++..|.||.|--+.....+. ........+...+..| +
T Consensus 153 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~----------~~~~~~~~~~~~~~~p-l- 218 (259)
T d2ae2a_ 153 --PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQ----------DPEQKENLNKLIDRCA-L- 218 (259)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTT----------SHHHHHHHHHHHHTST-T-
T ss_pred --ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhh----------chhhHHHHHHHHhcCC-C-
Confidence 12578999999999999998876 58999999999986432100000 0111122233333333 1
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
.-+...+|+|+++++++.... --.|+++.+.+|
T Consensus 219 --------------~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 219 --------------RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 252 (259)
T ss_dssp --------------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------------CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 225678999999999887432 234578888655
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.82 E-value=6.6e-19 Score=156.74 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=161.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
.|.+|||||++.||.+++++|+++|++|++++|.........+.++. ...++.++.+|+++++++.+++++ .
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999998854333333333333 346788999999999999877765 4
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHh------cCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAA------HKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~------~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
++|++|||||...... ...+....+++|+.++..+.+++.. .+..++|++||...+...+
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~---------- 148 (257)
T d2rhca1 79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVV---------- 148 (257)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCT----------
T ss_pred CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccc----------
Confidence 7999999999765432 2334566888999999999887753 3445899999866543322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.|--+...... .......+...+...+...+..|
T Consensus 149 -~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~P----- 218 (257)
T d2rhca1 149 -HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVR----EHYSDIWEVSTEEAFDRITARVP----- 218 (257)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHH----HHHHHHTTCCHHHHHHHHHTTST-----
T ss_pred -cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHH----hhhhhhcccChHHHHHHHHhcCC-----
Confidence 2568999999999999998887 5799999999988543100000 00000000112223333443333
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
..-+...+|+|+++++++... .--.|+++.+.+|
T Consensus 219 -----------lgR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 219 -----------IGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp -----------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -----------CCCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 123668999999999998643 2334578888655
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.82 E-value=3.4e-19 Score=157.82 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=156.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++|+++||||++.||++++++|+++|++|++++|... ...+..+++ ..++.++.+|+++++++.+++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE---EGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999987542 333333333 35788999999999999887765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++||+||+..... ...+....+++|+.++..+.+++ ++.+-.++|++||...+....
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~---------- 146 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLA---------- 146 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccccc----------
Confidence 47999999999775433 22345567889999888877665 445567999999976643222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+.-+ +.. ....... -...
T Consensus 147 -~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~-------------------~~~----~~~~~~~-~~~~ 201 (254)
T d1hdca_ 147 -LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP-------------------MTA----ETGIRQG-EGNY 201 (254)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH-------------------HHH----HHTCCCS-TTSC
T ss_pred -chhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc-------------------cch----hcCHHHH-HHHH
Confidence 2578999999999999998876 6899999999988543 111 1111100 0000
Q ss_pred CccccCCCCcccccc-ccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDY-IDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~-i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
.......+ ...+|+|+++++++... .--.|+++.+.+|.
T Consensus 202 -------~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 202 -------PNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp -------TTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -------hCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence 00011112 35799999999988643 22345799887663
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.82 E-value=4.1e-19 Score=158.71 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=153.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|.++||||++.||++++++|+++|++|++++|.........+.+........++.++.+|+++++++.++++.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998865444444444444433335689999999999998887765
Q ss_pred -CCCcEEEEcccccCccC--------CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeec-ceeecCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE--------STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSST-CATYGEPDKMPIT 188 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS-~~vyg~~~~~~~~ 188 (393)
.++|++|||||...... ...+....+++|+.++..+.+++. +.+- .+|.++| .+.+..
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g-~iI~~~S~~~~~~~------- 154 (264)
T d1spxa_ 83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG-EIVNISSIASGLHA------- 154 (264)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCTTSSSSC-------
T ss_pred hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC-cceeeeeecccccc-------
Confidence 47999999999753221 223456678899998877776654 3333 5555554 332211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
......|+.+|...+.+.+.++.+ .|+++..|.||.|--+.......+... ..-.........+..|
T Consensus 155 ----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~------~~~~~~~~~~~~~~~P 224 (264)
T d1spxa_ 155 ----TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEET------SKKFYSTMATMKECVP 224 (264)
T ss_dssp ----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------------HHHHHHHHHHCT
T ss_pred ----CCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHH------HHHHHHHHHHHHhcCC
Confidence 112467999999999999988776 689999999999865432111000000 0111112222222222
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhc--CCCCCcceEEecCCC
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN--AKPGKVGIYNVGTGK 316 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~--~~~~~~~~yni~~~~ 316 (393)
..-+...+|+|+++++++.. ..--.|+++.+.+|.
T Consensus 225 ----------------l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 225 ----------------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 261 (264)
T ss_dssp ----------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred ----------------CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence 12256789999999998853 222345789886664
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.82 E-value=3.6e-19 Score=158.61 Aligned_cols=238 Identities=15% Similarity=0.102 Sum_probs=159.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||.++++.|+++|++|++++|.....+... .++.....++..+.+|+++++++.++++.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~---~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAE---ASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988543323333 33333346788999999999998877765
Q ss_pred -CCCcEEEEcccccCc-cC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYV-GE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||.... .. ...+....+++|+.++..+.+++ .+.+-.++|++||...+...+
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~--------- 150 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP--------- 150 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT---------
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCc---------
Confidence 489999999997532 21 23345667889999888777665 344567999999977653322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCC-CCcccccccchHHHHHHHhCCCCcee
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAP-HPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
...+|+.+|...+.+.+.++.+ .|+++..+.||.|--+.......+.. ...............+...+..|
T Consensus 151 --~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P--- 225 (260)
T d1zema1 151 --NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP--- 225 (260)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST---
T ss_pred --chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC---
Confidence 2568999999999999988877 58999999999986541000000000 00000000111223333333333
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecC
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGT 314 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~ 314 (393)
..-+...+|+|.++++++.... --.|+++.+.+
T Consensus 226 -------------l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 259 (260)
T d1zema1 226 -------------MRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 259 (260)
T ss_dssp -------------TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCC
Confidence 1225678999999999887432 22456777744
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.82 E-value=2.7e-19 Score=159.56 Aligned_cols=237 Identities=13% Similarity=-0.001 Sum_probs=155.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.++|++|||||++.||.+++++|+++|++|++++|..... +...+.+.... ..++.++.+|+++++++.+++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH--GVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH--TSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998753221 22222222221 24788899999999999888765
Q ss_pred --CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++|||||+..... ...+....+++|+.++..+.+.+ ++.+-.++|++||...+...+
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~--------- 150 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA--------- 150 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT---------
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccC---------
Confidence 47999999999775432 23345668889988877766554 455667999999976653222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.|--+..+..+......... .........+.+..|
T Consensus 151 --~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P---- 221 (260)
T d1x1ta1 151 --NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGV---DQETAARELLSEKQP---- 221 (260)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------------CHHHHCT----
T ss_pred --CcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCC---ChHHHHHHHHHhcCC----
Confidence 2568999999999999998876 6899999999998655321110000000000 000000000111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
..-+...+|+|+++++++... .--.|+++.+.+|
T Consensus 222 ------------l~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 222 ------------SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp ------------TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------------CCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 223678999999999988643 2334578888655
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.82 E-value=1.7e-18 Score=154.96 Aligned_cols=232 Identities=15% Similarity=0.159 Sum_probs=160.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|++|||||++.||.+++++|+++|++|++++|... ...+...++.. ...+.++.+|+++++++.+++++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~---~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD---HGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999987432 22333333332 35688899999999999887754
Q ss_pred -CCCcEEEEcccccCccC------CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE------STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+||...... ...+....+++|+.++..+.+.+. +.+-.++|++||...+-...+
T Consensus 80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~------- 152 (268)
T d2bgka1 80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG------- 152 (268)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT-------
T ss_pred cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccc-------
Confidence 48999999999754321 123455678899998887776654 445568999988655422111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+-.+.....++ .-............+
T Consensus 153 ---~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-----------~~~~~~~~~~~~~~~--- 215 (268)
T d2bgka1 153 ---VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFG-----------VDSSRVEELAHQAAN--- 215 (268)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSS-----------CCHHHHHHHHHHTCS---
T ss_pred ---cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhc-----------CCHHHHHHHHHhccc---
Confidence 1347999999999999988776 68999999999997764332111 111111121111111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCcc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~~ 318 (393)
....+...+|+|+++++++... .--.|+++.+.+|-..
T Consensus 216 ------------~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t~ 254 (268)
T d2bgka1 216 ------------LKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTR 254 (268)
T ss_dssp ------------SCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ------------cCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCccc
Confidence 0112567899999999998643 2334689989776443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.82 E-value=2.9e-19 Score=158.83 Aligned_cols=233 Identities=16% Similarity=0.087 Sum_probs=156.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~ 124 (393)
|.+|||||++.||++++++|+++|++|++++|.........+.+.+ ...++.++.+|+++++++.+++++ .+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4569999999999999999999999999998854333333333333 346788999999999998887765 47
Q ss_pred CcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcC-CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 125 FDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHK-VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
+|++|||||...... ...+....+++|+.++..+.+++. +.+ ..++|++||...+...+ .
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~-----------~ 147 (255)
T d1gega_ 79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP-----------E 147 (255)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-----------T
T ss_pred ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCc-----------c
Confidence 999999999765433 233456688899999888877653 333 45799999876542222 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++..|.||.+--+..... ........+...........+..|
T Consensus 148 ~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p------- 216 (255)
T d1gega_ 148 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEI----DRQVSEAAGKPLGYGTAEFAKRIT------- 216 (255)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHH----HHHHHHHHTCCTTHHHHHHHTTCT-------
T ss_pred cccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhh----hhhhHhhhcccchhHHHHHHhcCC-------
Confidence 568999999999999988776 689999999998854310000 000000000000111112222222
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
..-+...+|+|+++++++... .--.|+++.+.+|-
T Consensus 217 ---------l~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 217 ---------LGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred ---------CCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence 223678999999999988643 22345788886663
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.82 E-value=7.6e-19 Score=157.60 Aligned_cols=239 Identities=12% Similarity=0.003 Sum_probs=156.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||+++++.|+++|++|++++|.....+...+.+.+......++.++.+|+++++++.+++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999854433444444443322335688999999999998877755
Q ss_pred -CCCcEEEEcccccCccCC----cc----ChHHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TL----EPLRYYHNITSNTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~----~~~~~~~~n~~~~~~ll~~~~~----~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++||+||....... .. .....+++|+.++..+.+++.. .+-..++.+||.+.....
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~------- 155 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQ------- 155 (272)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCC-------
T ss_pred hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCC-------
Confidence 479999999997654321 11 2456778999988887776543 333344445544433221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.....|+.+|...+.+.+.++.+ .|+++..|.||.|--+....... . .................
T Consensus 156 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~--------~~~~~~~~~~~~~~~~~ 222 (272)
T d1xkqa_ 156 ----PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGM-P--------DQASQKFYNFMASHKEC 222 (272)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTC-C--------HHHHHHHHHHHHHCTTT
T ss_pred ----CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCC-c--------hHHHHHHHHHHHHHhcC
Confidence 12568999999999999988866 68999999999985442100000 0 01111111111111110
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC--CCCCcceEEecCCCcc
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA--KPGKVGIYNVGTGKGR 318 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~--~~~~~~~yni~~~~~~ 318 (393)
++ ..-+...+|+|+++++++..+ .--.|+++.+.+|..+
T Consensus 223 ~P-------------lgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 223 IP-------------IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp CT-------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred CC-------------CCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 11 123667899999999988532 2234579988776543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.8e-20 Score=165.41 Aligned_cols=235 Identities=17% Similarity=0.125 Sum_probs=157.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+|++|||||++.||.++++.|+++|++|++++|.........+.+.+.. ...++.++.+|+++++++.++++.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-CCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999999999999885443333333333221 125788899999999998877754
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHH----hcC---CcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMA----AHK---VKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|++||+||... ..+....+++|+.++..+...+. +.+ ..++|++||...+-. ...
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~-----------~~~ 145 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-----------VAQ 145 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-----------CTT
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC-----------CCC
Confidence 47999999999864 35678889999988776665553 322 247999999765422 222
Q ss_pred CChHHHHHHHHHHHHHH--HHh---hCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 196 INPYGKAKKMSEDIIID--FSK---TTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~--~~~---~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
...|+.+|...+.+.+. ++. ..|+++..+.||.|--+-.+.... ... .+... ...+.+.+. ++
T Consensus 146 ~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~---~~~---~~~~~-~~~~~~~~~---~p-- 213 (254)
T d2gdza1 146 QPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK---EEN---MGQYI-EYKDHIKDM---IK-- 213 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGC---HHH---HGGGG-GGHHHHHHH---HH--
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccc---ccc---ccccH-HHHHHHHhc---CC--
Confidence 56899999999988764 232 378999999999885331000000 000 00000 001111111 11
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCcccHHH
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKE 322 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~~s~~e 322 (393)
...+...+|+|+++++++.++. -.|+++.+.+|..+.++|
T Consensus 214 -----------~~r~~~pedvA~~v~fL~s~~~-itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 214 -----------YYGILDPPLIANGLITLIEDDA-LNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp -----------HHCCBCHHHHHHHHHHHHHCTT-CSSCEEEEETTTEEEECC
T ss_pred -----------CCCCcCHHHHHHHHHHHHcCCC-CCCCEEEECCCCeeeccc
Confidence 1125678999999999998654 456899998887665543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.82 E-value=7e-19 Score=155.84 Aligned_cols=224 Identities=15% Similarity=0.114 Sum_probs=155.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||+++++.|+++|++|++++|... ...+..+++. ...++.++.+|++|++++.+++++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~---~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD---VGEKAAKSVG-TPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHHC-CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHhC-CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999988432 2222233332 346889999999999998877765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCC-cEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKV-KTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ...+....+++|+.++..+.+++. +.+. .++|++||...+-..
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~---------- 149 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------- 149 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC----------
Confidence 57999999999775432 233455688899999888877754 3343 378999996654221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.....|+.+|...+.+.+.++.+ +|+++..|.||.+-.+.... ..-...........|
T Consensus 150 -~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~--------------~~~~~~~~~~~~~~p-- 212 (251)
T d1zk4a1 150 -PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD--------------LPGAEEAMSQRTKTP-- 212 (251)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT--------------STTHHHHHTSTTTCT--
T ss_pred -CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHh--------------cCCHHHHHHHHhCCC--
Confidence 12568999999999988877643 58999999999986542110 000111111111111
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
..-+...+|+|+++++++.... --.|+++.+.+|
T Consensus 213 --------------l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 213 --------------MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp --------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------------CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 2236789999999999886432 234578888655
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.81 E-value=1.3e-18 Score=156.17 Aligned_cols=237 Identities=13% Similarity=0.014 Sum_probs=159.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+|+++||||++.||+++++.|+++|++|++++|.....+...+.+........++.++.+|+++++++.+++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999998854433344444444333335688999999999998877755
Q ss_pred CCCcEEEEcccccCccC------CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE------STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ...+....+++|+.++..+.+++. +.+-.++|++||.+.....
T Consensus 83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~---------- 152 (274)
T d1xhla_ 83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH---------- 152 (274)
T ss_dssp SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC----------
T ss_pred CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccC----------
Confidence 47999999999653321 112356678899998887766654 4455678888885543221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
.....|+.+|...+.+.+.++.+ .|+++..+.||.|--+...... . .. ................+|
T Consensus 153 -~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~----~-~~----~~~~~~~~~~~~~~~~iP- 221 (274)
T d1xhla_ 153 -SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMG----L-PE----TASDKLYSFIGSRKECIP- 221 (274)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTT----C-CH----HHHHHHHHHHHHCTTTCT-
T ss_pred -CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhc----c-cc----hhhHHHHHHHHHHHcCCC-
Confidence 12568999999999999887776 6899999999998654210000 0 00 111111222211111011
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhc--CCCCCcceEEecCCCc
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALAN--AKPGKVGIYNVGTGKG 317 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~--~~~~~~~~yni~~~~~ 317 (393)
..-+...+|+|+++++++.. ..--.|+++.+.+|..
T Consensus 222 ------------lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 222 ------------VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred ------------CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 12356799999999999852 2323457998877643
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.81 E-value=6.6e-19 Score=155.27 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=158.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC-CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR-GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----N 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~ 123 (393)
+.||||||++.||++++++|+++|++|++.++... ..+...+.++.. ..++.++.+|+++++++.+++++ .
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY---GGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc---CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 37999999999999999999999999988754332 222223333322 45788999999999999887765 4
Q ss_pred CCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
++|++||+||...... ...+....+++|+.++..+.+.+ ++.+-.++|++||...+-..+ .
T Consensus 79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~-----------~ 147 (244)
T d1edoa_ 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI-----------G 147 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-----------T
T ss_pred CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCC-----------C
Confidence 7999999999775432 23445668889998877776655 445667999999976653222 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGT 272 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (393)
...|+.+|...+.+.+.++.+ .|+++..+.||.+--+... .+.....+...+..| +
T Consensus 148 ~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~---------------~~~~~~~~~~~~~~p-l----- 206 (244)
T d1edoa_ 148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA---------------KLGEDMEKKILGTIP-L----- 206 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH---------------TTCHHHHHHHHTSCT-T-----
T ss_pred CHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH---------------HhhHHHHHHHHhcCC-C-----
Confidence 568999999999999998877 6899999999988543211 223344455555444 2
Q ss_pred cccCCCCccccccccHHHHHHHHHHHHhcCC--CCCcceEEecCC
Q 016208 273 DYNTADGTCVRDYIDVTDLVDAHVLALANAK--PGKVGIYNVGTG 315 (393)
Q Consensus 273 ~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~yni~~~ 315 (393)
.-+...+|+|+++.+++..+. --.|+++.+.+|
T Consensus 207 ----------~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG 241 (244)
T d1edoa_ 207 ----------GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp ----------CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred ----------CCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCC
Confidence 225678999999999864322 224578888655
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=7.2e-19 Score=156.53 Aligned_cols=228 Identities=15% Similarity=0.079 Sum_probs=156.2
Q ss_pred CCCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-
Q 016208 46 EPGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 122 (393)
...+|++|||||+| .||++++++|+++|++|++.+|......... +.........++.+|+++++++.++++.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAE----KLAEALGGALLFRADVTQDEELDALFAGV 80 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HHHHHTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHH----HhhhccCcccccccccCCHHHHHHHHHHH
Confidence 45679999999998 7999999999999999998887532222211 2111235678899999999998887654
Q ss_pred ----CCCcEEEEcccccCcc--------CCccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCC
Q 016208 123 ----NAFDAVMHFAAVAYVG--------ESTLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 ----~~~d~Vi~~A~~~~~~--------~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|++||+|+..... ....+....+++|+.++..+.+.+... +-.++|++||.......
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~------ 154 (256)
T d1ulua_ 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------ 154 (256)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC------
T ss_pred HHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC------
Confidence 5799999999875321 112234557889999998888877643 12479999986654322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCC
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP 265 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
.....|+.+|...+.+.+.++.+ +|+++..+.||.+.-+..... .......+...+..|
T Consensus 155 -----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~-------------~~~~~~~~~~~~~~p 216 (256)
T d1ulua_ 155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-------------PGFTKMYDRVAQTAP 216 (256)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------CHHHHHHHHHHST
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccch-------------hhhHHHHHHHHhcCC
Confidence 23578999999999999988877 689999999999876542210 112233344444333
Q ss_pred ceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 266 GLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 266 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
+ .-+...+|+|+++++++.... --.|+++.+.+|..
T Consensus 217 -l---------------~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 217 -L---------------RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (256)
T ss_dssp -T---------------SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -C---------------CCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence 1 125578999999999987432 23457888866643
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.81 E-value=7.3e-19 Score=156.70 Aligned_cols=235 Identities=14% Similarity=0.134 Sum_probs=162.7
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+....|++|||||++.||.++++.|+++|++|++++|......+..+.+.+.. ..++.++.+|+++++++.+++++
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999987655444444433221 35788999999999998877754
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH-----hcCCcEEEEeecceeecCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
.++|++||+||...... ...+....+++|+.++..+.+.+. +.+...++..||...+...... -
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~----~ 158 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----L 158 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----T
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc----c
Confidence 47999999999764432 233455678899988877766543 2234466666665443221100 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.+......|+.+|...+.+.+.++.+ .|+++..|.||.|--+... .+.+...+...+..| +
T Consensus 159 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~---------------~~~~~~~~~~~~~~p-l 222 (260)
T d1h5qa_ 159 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA---------------HMDKKIRDHQASNIP-L 222 (260)
T ss_dssp TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG---------------GSCHHHHHHHHHTCT-T
T ss_pred ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchh---------------ccCHHHHHHHHhcCC-C
Confidence 01123568999999999999988776 6899999999998654211 233444455555444 2
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.-+...+|+|+++++++.... --.|+++.+.+|.
T Consensus 223 ---------------~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 223 ---------------NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp ---------------SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred ---------------CCCcCHHHHHHHHHHHhcchhCCCcCceEEECCCe
Confidence 125578999999999886432 2345788886664
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.3e-18 Score=157.74 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=160.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcC--CCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP--QPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
..+|+++||||++.||.++++.|+++|++|++++|.........+.+..... ...++.++.+|+++++++.+++++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 4669999999999999999999999999999998865443444444433221 235788899999999998887755
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+|+...... ...+....+++|+.++..+.+++. +.+..++|++||....+.
T Consensus 90 ~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~~---------- 159 (297)
T d1yxma1 90 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF---------- 159 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC----------
T ss_pred HHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccccc----------
Confidence 47999999999764432 233455678899999888877664 334557888776432211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.....|+.+|...+.+.+.++.+ .|+++..|.||.|..+.....++ .......+...+..|
T Consensus 160 --~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-----------~~~~~~~~~~~~~~p--- 223 (297)
T d1yxma1 160 --PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYG-----------SWGQSFFEGSFQKIP--- 223 (297)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSG-----------GGGGGGGTTGGGGST---
T ss_pred --cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhcc-----------ccCHHHHHHHHhcCC---
Confidence 12568999999999999998877 58999999999987653211100 111111111112111
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
..-+...+|+|.++++++... .--.|+++.+.+|..
T Consensus 224 -------------lgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~s 260 (297)
T d1yxma1 224 -------------AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRS 260 (297)
T ss_dssp -------------TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -------------CCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChh
Confidence 123567899999999998643 223457998876643
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.79 E-value=3.7e-18 Score=150.00 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=128.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCe-------EEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYR-------VTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
+.||||||++.||++++++|+++|++ |+..+|.... +.+...++......+.++.+|++|.+++.+++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~---l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~ 78 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD---LEKISLECRAEGALTDTITADISDMADVRRLTTH 78 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH---HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH---HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35899999999999999999999987 7777764332 2233333333456788999999999998877655
Q ss_pred -----CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCC
Q 016208 123 -----NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
.++|++||+||....... ..+....+++|+.++..+.+++ ++.+-.++|++||...+...+
T Consensus 79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~------ 152 (240)
T d2bd0a1 79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR------ 152 (240)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------
T ss_pred HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCC------
Confidence 479999999997754432 3345668889999887776655 455567999999976653222
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+--+
T Consensus 153 -----~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~ 193 (240)
T d2bd0a1 153 -----HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTP 193 (240)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCST
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCc
Confidence 2568999999999999888776 6899999999998654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.79 E-value=9.1e-18 Score=149.48 Aligned_cols=238 Identities=15% Similarity=0.065 Sum_probs=157.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC-CchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG-NMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..+|+||||||++.||.++++.|+++|++|++..+.... .+...+.+.. ...++.++.+|+++.+++.+++++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~---~g~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK---LGAQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH---cCCCceEecCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999999999999987653322 2222333333 245788999999999988877654
Q ss_pred ---CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeec-ceeecCCCCCCCCCCCC
Q 016208 123 ---NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSST-CATYGEPDKMPITESTP 192 (393)
Q Consensus 123 ---~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS-~~vyg~~~~~~~~E~~~ 192 (393)
.++|++||+||...... ........+++|+.+...+++.+... .-++++.++| .+.+..
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~----------- 148 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG----------- 148 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS-----------
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccC-----------
Confidence 57999999999775432 23345567889999988888877653 1235555544 333321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
......|+.+|...+.+.+.++.+ .|+++..|.||.+--+........ .......+.....+.+...+..|
T Consensus 149 ~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p---- 222 (259)
T d1ja9a_ 149 IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWH--YAPGGYKGMPQEKIDEGLANMNP---- 222 (259)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGG--TSTTCCTTCCHHHHHHHHHHTST----
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhh--hhhhhcccCCHHHHHHHHHhCCC----
Confidence 112568999999999999988776 689999999999853210000000 00000000222334444444443
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCCC-CCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKP-GKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~yni~~~ 315 (393)
..-+...+|+++++++++.+... -.|+++.+.+|
T Consensus 223 ------------l~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 223 ------------LKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------------CCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 22367899999999999875432 34578877654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.79 E-value=1.7e-18 Score=152.36 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=157.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
.+|+++||||++.||.++++.|+++|++|++++|+.. ...+.+.++ ..++.++++|+++++++.+++++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREER---LLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999988543 233333333 35788999999999999877665
Q ss_pred CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
.++|++||+|+...... ...+....+++|+.+...+.+++... +-+.++++||.+... ....
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~------------~~~~ 145 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG------------AFGL 145 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC------------HHHH
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc------------ccCc
Confidence 47999999999764432 23344567889999999988887654 233455555532211 1125
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...|.+.+.++.+ .|+++..+.||.+-.+... .+.+...+...+..| +
T Consensus 146 ~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~---------------~~~~~~~~~~~~~~p-~------ 203 (241)
T d2a4ka1 146 AHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA---------------GLPPWAWEQEVGASP-L------ 203 (241)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT---------------TSCHHHHHHHHHTST-T------
T ss_pred cccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH---------------hhhHhHHHHHHhCCC-C------
Confidence 67999999999999999887 5799999999998543211 233334444444444 1
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
..+...+|+|+++++++.+. .--.|+++.+.+|..
T Consensus 204 ---------~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 204 ---------GRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp ---------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred ---------CCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 12567899999999999743 223457888866643
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.79 E-value=5e-18 Score=151.33 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=152.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~ 124 (393)
.+||||||+|.||.+++++|+++|+ .|++++|+....+...+.+.++.....++.++.+|++|.+++.++++. .+
T Consensus 10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~~ 89 (259)
T d2fr1a1 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVP 89 (259)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccccc
Confidence 5899999999999999999999998 578788865555555555555544456789999999999999988765 25
Q ss_pred CcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHH
Q 016208 125 FDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYG 200 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~ 200 (393)
+|.|||+++......... +....++.|+.+..++.+++...+..++|++||....-...+ ...|+
T Consensus 90 i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~-----------~~~Ya 158 (259)
T d2fr1a1 90 LSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG-----------LGGYA 158 (259)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT-----------CTTTH
T ss_pred ccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcc-----------cHHHH
Confidence 899999999775543322 234466799999999999988887789999999776533322 56799
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCc
Q 016208 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280 (393)
Q Consensus 201 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 280 (393)
.+|...+.+.+.++. .|++++.|.||.+.+++.. -....+.+.. .|
T Consensus 159 Aaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~-----------------~~~~~~~~~~---------------~G- 204 (259)
T d2fr1a1 159 PGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA-----------------EGPVADRFRR---------------HG- 204 (259)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------------------CTT---------------TT-
T ss_pred HHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccc-----------------cchHHHHHHh---------------cC-
Confidence 999999998888765 7999999999998876411 0111111100 11
Q ss_pred cccccccHHHHHHHHHHHHhcCCCC
Q 016208 281 CVRDYIDVTDLVDAHVLALANAKPG 305 (393)
Q Consensus 281 ~~~~~i~v~Dva~a~~~~l~~~~~~ 305 (393)
...+..+++++++..++......
T Consensus 205 --~~~~~~~~~~~~l~~~l~~~~~~ 227 (259)
T d2fr1a1 205 --VIEMPPETACRALQNALDRAEVC 227 (259)
T ss_dssp --EECBCHHHHHHHHHHHHHTTCSS
T ss_pred --CCCCCHHHHHHHHHHHHhCCCce
Confidence 23567999999999999876543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.78 E-value=1.8e-18 Score=153.20 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=153.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|+++||||++.||.++++.|+++|++|++++|... ...+...++ ..+..++.+|+++.+++.++++.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~---~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA---AGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999887432 222333333 35678899999999998877765
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc---CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH---KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
.++|++||+||...... ...+....+++|+.++..+.+.+... +-.++|++||...+-. ..
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~-----------~~ 146 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLP-----------IE 146 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSC-----------CT
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcC-----------cc
Confidence 47999999999765432 23345668889998888777665432 2368999999765422 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.+|...+.+.+.++.+ +++++..+.||.+..+.....+.+ ... ........+
T Consensus 147 ~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~----------~~~---~~~~~~~~~---- 209 (253)
T d1hxha_ 147 QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK----------GVS---KEMVLHDPK---- 209 (253)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT----------TCC---HHHHBCBTT----
T ss_pred ccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcc----------hhh---HHHHHhCcc----
Confidence 2568999999999998877654 359999999999865310000000 000 011111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
-...-.+...+|+|+++++++... .--.|+++++.+|
T Consensus 210 ---------~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 210 ---------LNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp ---------TBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred ---------ccccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 111123677899999999988643 2234578888554
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.1e-18 Score=149.26 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=131.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
.-.++.|+||||++.||++++++|+++|++|++++|......+..+.+.. ...++..+.+|++|++++.++++.
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999998854433333333333 346789999999999998877654
Q ss_pred --CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEA----MAAHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
.++|++|||||......... .....+++|+.++.++.+. +.+.+-.++|++||...+-..
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~---------- 150 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------- 150 (244)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH----------
T ss_pred HcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCC----------
Confidence 57999999999876544332 3445778999887777655 455666799999997665221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh------CCCcEEEEeeccccC
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT------TNMAVMILRYFNVIG 231 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~------~g~~~~ilRp~~v~G 231 (393)
.....|+.+|+..+.+.+.++.+ .|+++..+.||.|--
T Consensus 151 -~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T 194 (244)
T d1yb1a_ 151 -PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNT 194 (244)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCC
Confidence 12567999999999999988765 479999999998743
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.78 E-value=6.5e-18 Score=151.70 Aligned_cols=230 Identities=14% Similarity=0.122 Sum_probs=153.1
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++|+++||||++.||+++++.|+++|++|++++|.. +.+.+...++ ..++..+.+|+++.+++.+++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~---~~l~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA---ERLAELETDH---GDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHc---CCCeeEEecccccHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998843 2222222232 25788999999999988877654
Q ss_pred -CCCcEEEEcccccCccCC-----cc----ChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES-----TL----EPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPIT 188 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~-----~~----~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 188 (393)
.++|++||+||....... .. .....+++|+.++..+.+++ ++.+ .++|++||...+-..
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~------ 149 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPN------ 149 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTT------
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCC------
Confidence 589999999997543211 11 24567889998877776665 3444 478888875443211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh--CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 189 ESTPQKPINPYGKAKKMSEDIIIDFSKT--TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 189 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
.....|+.+|...+.+.+.++.+ .++++..+.||.|--+-......... ..........+.+.+..|
T Consensus 150 -----~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~P- 218 (276)
T d1bdba_ 150 -----GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMG-----SKAISTVPLADMLKSVLP- 218 (276)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC--------------CHHHHHTTTCT-
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhh-----hhccCcHHHHHHHHhcCC-
Confidence 12568999999999999988776 45999999999986542111000000 000111123334444333
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhc--CCCCCcceEEecCC
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN--AKPGKVGIYNVGTG 315 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~--~~~~~~~~yni~~~ 315 (393)
+ .-+...+|+|+++++++.. ..--.|+++++.+|
T Consensus 219 l---------------gR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG 254 (276)
T d1bdba_ 219 I---------------GRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG 254 (276)
T ss_dssp T---------------SSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred C---------------CCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence 2 1245679999999988752 33334689988665
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.77 E-value=1.6e-17 Score=147.14 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=154.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCC-CHHHHHHHHhh---
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG-DAKAVNKIFAE--- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~--- 122 (393)
...|+||||||++.||..++++|+++|.+|+++.|...... ....+..... ..++.++.+|+. +.+++.+++++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~-~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT-ALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH-HHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH-HHHHHHhhCC-CCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999987655432 2233322222 357889999998 56666665544
Q ss_pred --CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHh----c---CCcEEEEeecceeecCCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA----H---KVKTLIYSSTCATYGEPDKMPITESTPQ 193 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~---~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 193 (393)
.++|++|||||... .......+++|+.++.++..++.. . ...++|++||...+....
T Consensus 81 ~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~---------- 146 (254)
T d1sbya1 81 QLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH---------- 146 (254)
T ss_dssp HHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT----------
T ss_pred HcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCC----------
Confidence 57999999999753 456788999999998888776643 2 235799999976653322
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEc
Q 016208 194 KPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270 (393)
Q Consensus 194 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
....|+.+|.....+.+.++.+ .|+++..|.||.|..+-... +.... .....+....
T Consensus 147 -~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~-~~~~~--------~~~~~~~~~~---------- 206 (254)
T d1sbya1 147 -QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHT-FNSWL--------DVEPRVAELL---------- 206 (254)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHS-CCCGG--------GSCTTHHHHH----------
T ss_pred -CCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccc-cccch--------hHHHHHHhcc----------
Confidence 2568999999999999888776 58999999999987541000 00000 0001111111
Q ss_pred CccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCC
Q 016208 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGK 316 (393)
Q Consensus 271 g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~ 316 (393)
..+.....+++|++++.+++.... |+++.+.+|.
T Consensus 207 ----------~~~~~~~~e~va~~~~~~~~~~~t--G~vi~vdgG~ 240 (254)
T d1sbya1 207 ----------LSHPTQTSEQCGQNFVKAIEANKN--GAIWKLDLGT 240 (254)
T ss_dssp ----------TTSCCEEHHHHHHHHHHHHHHCCT--TCEEEEETTE
T ss_pred ----------ccCCCCCHHHHHHHHHHhhhCCCC--CCEEEECCCE
Confidence 112244689999999998887653 4788886663
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.2e-18 Score=152.08 Aligned_cols=172 Identities=19% Similarity=0.151 Sum_probs=129.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC---CCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---C
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR---GNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---N 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~ 123 (393)
+.||||||++.||+++++.|+++|.+|+.+.+..+ ....+.+...++.....++.++.+|++|.+++.+++++ .
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g 82 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG 82 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence 56789999999999999999999987665544332 23333444445545557899999999999999988765 4
Q ss_pred CCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 124 AFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.+|++||+|+....... ..+....+++|+.++.++.+++ ++.+-.++|++||.+..-.. ..
T Consensus 83 ~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~-----------~~ 151 (285)
T d1jtva_ 83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------PF 151 (285)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------TT
T ss_pred chhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-----------CC
Confidence 69999999997755432 2344557779998877766654 55566799999997654222 12
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGS 232 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~ 232 (393)
...|+.+|...+.+.+.++.+ .|+++..+.||.|--+
T Consensus 152 ~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 152 NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 568999999999999888777 6899999999998543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=6.5e-18 Score=150.03 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=129.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.+.|.+|||||++.||.++++.|+++|++|++++|.....+...+.+..... ...+.++.+|+++++++.++++.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-PGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999998854333333344443221 24788899999999988877655
Q ss_pred -CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcC--CcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHK--VKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+||....... .......+++|+.+...+.+.+ ++.+ -.++|++||.+.+...
T Consensus 87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~--------- 157 (257)
T d1xg5a_ 87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL--------- 157 (257)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC---------
T ss_pred cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC---------
Confidence 579999999997654332 3445667789988877765554 3443 3589999997654221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccC
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIG 231 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G 231 (393)
|......|+.+|...+.+.+.++.+ .++++..+.||.+-.
T Consensus 158 p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t 202 (257)
T d1xg5a_ 158 PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVET 202 (257)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCS
T ss_pred CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCC
Confidence 1122456999999999999887753 689999999987754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=2.1e-17 Score=144.72 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=150.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~ 125 (393)
.+.|++|||||++.||+++++.|+++|++|++++|.. +.+++ .+.+++.+|+++. +.+.+.+ .++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~-------~~l~~-----~~~~~~~~Dv~~~~~~~~~~~--g~i 67 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKR-----SGHRYVVCDLRKDLDLLFEKV--KEV 67 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHH-----TCSEEEECCTTTCHHHHHHHS--CCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-------HHHHh-----cCCcEEEcchHHHHHHHHHHh--CCC
Confidence 3568999999999999999999999999999998742 12222 3567888999764 3444444 689
Q ss_pred cEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 126 d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
|++||+||...... ...+....+++|+.++..+.+++ ++.+..++|++||....... ....
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~-----------~~~~ 136 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-----------ENLY 136 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------TTBH
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc-----------cccc
Confidence 99999999764432 23334557778988876666554 45566689999996654322 2356
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...+.+.+.++.+ .|+++..+.||.+-.+.... .+-....+...+..|
T Consensus 137 ~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~--------------~~~~~~~~~~~~~~p--------- 193 (234)
T d1o5ia_ 137 TSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE--------------LLSEEKKKQVESQIP--------- 193 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH--------------HSCHHHHHHHHTTST---------
T ss_pred cchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhh--------------hcCHHHHHHHHhcCC---------
Confidence 8999999999998888776 58999999999986653110 122233344444433
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTG 315 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~ 315 (393)
...+...+|+|.++++++... .--.|+++.+.+|
T Consensus 194 -------l~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 194 -------MRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGG 228 (234)
T ss_dssp -------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------CCCCcCHHHHHHHHHHHhChhhcCCcCcEEEECcc
Confidence 123668999999999988643 2234578888655
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=5.3e-18 Score=153.91 Aligned_cols=217 Identities=14% Similarity=0.049 Sum_probs=148.3
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC------CchhhhhhhhhcCCCCccEEEEccCCCHHHHH
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG------NMGAVKVLQELFPQPGQLQFIYADLGDAKAVN 117 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 117 (393)
++....|+++||||++.||+++++.|+++|++|++.+|.... .....+...++. .......+|+.+.+++.
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 78 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR---RRGGKAVANYDSVEAGE 78 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHH---HTTCEEEEECCCGGGHH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHh---hcccccccccchHHHHH
Confidence 345567999999999999999999999999999998875321 222222223321 23345566777665554
Q ss_pred HHHhh-----CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCC
Q 016208 118 KIFAE-----NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDK 184 (393)
Q Consensus 118 ~~~~~-----~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~ 184 (393)
++++. .++|++|||||+...... ..+....+++|+.++..+.+++ ++.+-.++|++||...+....
T Consensus 79 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~- 157 (302)
T d1gz6a_ 79 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF- 157 (302)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCC-
Confidence 44332 479999999998754432 2345567889999988776664 455667999999976543222
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHh
Q 016208 185 MPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR 261 (393)
Q Consensus 185 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
....|+.+|...+.+.+.++.+ .|+++..+.||.+--+.. ...
T Consensus 158 ----------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~----------------~~~-------- 203 (302)
T d1gz6a_ 158 ----------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTE----------------TVM-------- 203 (302)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTG----------------GGS--------
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchh----------------hcC--------
Confidence 2578999999999999988877 689999999987532110 000
Q ss_pred CCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCC
Q 016208 262 GIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTG 315 (393)
Q Consensus 262 ~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~ 315 (393)
.+....++..+|+|.++++++.......|+++.+.+|
T Consensus 204 -----------------~~~~~~~~~PedvA~~v~fL~S~~a~itG~~i~vdGG 240 (302)
T d1gz6a_ 204 -----------------PEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 240 (302)
T ss_dssp -----------------CHHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred -----------------cHhhHhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCCC
Confidence 1112234556899999999886433345678877655
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.76 E-value=4.6e-17 Score=147.69 Aligned_cols=231 Identities=14% Similarity=0.091 Sum_probs=155.4
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
...+|+++||||+|.||++++++|++.|++|++++|.........+.+.... ...+.++.+|+++.+++..++..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc--CCceEEEEecccChHHHHHHhhhhhh
Confidence 5667999999999999999999999999999999986544333333333221 35678899999999998766544
Q ss_pred --CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHH-----hcCCcEEEEeecceeecCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMA-----AHKVKTLIYSSTCATYGEPDKMPITEST 191 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 191 (393)
.++|++||+||......... +....+.+|......+...+. ..+...++.+||.......+
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~-------- 171 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG-------- 171 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT--------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccc--------
Confidence 57999999999765443222 234456677766665544432 22344667777654432222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCcee
Q 016208 192 PQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK 268 (393)
Q Consensus 192 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
...+|+.+|...+.+.+.++.+ .|+++..|.||.|-.+...... .-.........+..|
T Consensus 172 ---~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~------------~~~~~~~~~~~~~~p--- 233 (294)
T d1w6ua_ 172 ---FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRL------------DPTGTFEKEMIGRIP--- 233 (294)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------C------------CTTSHHHHHHHTTCT---
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhcc------------CCcHHHHHHHhhcCC---
Confidence 2567999999999999988876 6899999999999765422111 011223344444433
Q ss_pred EcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCc
Q 016208 269 IRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKG 317 (393)
Q Consensus 269 ~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~ 317 (393)
..-+...+|+|+++.+++.... --.|+++.+.+|..
T Consensus 234 -------------l~R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~~ 270 (294)
T d1w6ua_ 234 -------------CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEE 270 (294)
T ss_dssp -------------TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred -------------CCCCCCHHHHHHHHHHHhCchhcCCCCcEEEECCChh
Confidence 1225678999999999987432 23457998877643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.2e-17 Score=143.68 Aligned_cols=227 Identities=12% Similarity=0.047 Sum_probs=157.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-CCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-NAF 125 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~ 125 (393)
...|++|||||++.||+++++.|+++|++|++++|... ..+.+.+ ..++.....|+.+.+.+...... .++
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~----~l~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~i 75 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES----KLQELEK----YPGIQTRVLDVTKKKQIDQFANEVERL 75 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHGGGGG----STTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHh----ccCCceeeeeccccccccccccccccc
Confidence 45689999999999999999999999999999988432 1222222 25788899999988877766654 579
Q ss_pred cEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTPQKPIN 197 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~ 197 (393)
|++||+||....... ..+....+++|+.++..+.+.+. +.+..++|++||...- ..+.....
T Consensus 76 d~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~----------~~~~~~~~ 145 (245)
T d2ag5a1 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS----------VKGVVNRC 145 (245)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT----------TBCCTTBH
T ss_pred eeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc----------cCCccchh
Confidence 999999997755432 33455677899999888876654 3455689999884321 11233467
Q ss_pred hHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccc
Q 016208 198 PYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDY 274 (393)
Q Consensus 198 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (393)
.|+.+|...+.+.+.++.+ .|+++..|.||.|-.|.... ............+.+.+..|
T Consensus 146 ~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~---------~~~~~~~~~~~~~~~~~~~p--------- 207 (245)
T d2ag5a1 146 VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE---------RIQARGNPEEARNDFLKRQK--------- 207 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHH---------HHHHSSSHHHHHHHHHHTCT---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHh---------hhhhhhhhHHHHHHHHhcCC---------
Confidence 8999999999999998877 68999999999986542100 00000111222333333333
Q ss_pred cCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 275 NTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 275 ~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
...+...+|+++++.+++... ..-.|+++.+.+|.
T Consensus 208 -------l~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 208 -------TGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (245)
T ss_dssp -------TSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred -------CCCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence 123668899999999998743 22345788886664
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.75 E-value=1.8e-16 Score=141.93 Aligned_cols=239 Identities=16% Similarity=0.091 Sum_probs=156.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
.++|++|||||++.||.++++.|+++|++|++++|.... ...+...++......+.++.+|+++++++.+++++
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~--~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE--SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH--HHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 556999999999999999999999999999998874322 12222222323346788999999999998877655
Q ss_pred -CCCcEEEEcccccCccC----CccChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 -NAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|++||+++...... ...+....+++|+.++..+.+++... .-+++++++|...... +...
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~----------~~~~ 163 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK----------AVPK 163 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS----------SCSS
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccc----------cccc
Confidence 57999999999765442 23345557789999999988888754 2246777766432111 1223
Q ss_pred CChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHH-HHHhCCCCceeEcC
Q 016208 196 INPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACF-DAARGIIPGLKIRG 271 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 271 (393)
...|+.+|...+.+.+.++.+ .|+++..|.||.+-.+.....+....... ......... ....+..|
T Consensus 164 ~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~P------ 234 (272)
T d1g0oa_ 164 HAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNG---ENLSNEEVDEYAAVQWSP------ 234 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTC---TTCCHHHHHHHHHHHSCT------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcc---cccchHHHHHHHHHccCC------
Confidence 567999999999999888776 68999999999985431000000000000 000111111 11222222
Q ss_pred ccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 272 ~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
..-+...+|+|.++++++.... --.|+++.+.+|.
T Consensus 235 ----------lgR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 235 ----------LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp ----------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ----------CCCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 1236788999999999987432 2345788886653
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=9.7e-18 Score=149.33 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=131.1
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHH---CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
...+|.++||||++.||.+++++|.+ +|++|++++|.........+.+..... ..++.++.+|+++++++.++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP-DLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT-TSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcC-CceEEEEEccCCCHHHHHHHHHH
Confidence 35668999999999999999999986 799999998854433333343433222 24788999999999998877643
Q ss_pred ---------CCCcEEEEcccccCccC-------CccChHHHHHHHHHHHHHHHHHHHhc----C--CcEEEEeecceeec
Q 016208 123 ---------NAFDAVMHFAAVAYVGE-------STLEPLRYYHNITSNTLVILEAMAAH----K--VKTLIYSSTCATYG 180 (393)
Q Consensus 123 ---------~~~d~Vi~~A~~~~~~~-------~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~~V~~SS~~vyg 180 (393)
...|++||+||...... ........+++|+.++..+.+++... + ..++|++||...+.
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 25789999999653211 11235568889999999998888654 2 24799999976542
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh-CCCcEEEEeeccccCC
Q 016208 181 EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT-TNMAVMILRYFNVIGS 232 (393)
Q Consensus 181 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~G~ 232 (393)
. ......|+.+|...+.+.+.++.+ .|+++..|.||.|-.+
T Consensus 162 ~-----------~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 162 P-----------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp C-----------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred C-----------CccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 2 223578999999999999998877 7899999999998654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.74 E-value=2.2e-16 Score=139.50 Aligned_cols=172 Identities=14% Similarity=0.112 Sum_probs=125.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHH---CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
.||+||||||++.||.+++++|++ .|++|++++|.........+... ...++.++.+|++|++++.++++.
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~i~ 76 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK----NHSNIHILEIDLRNFDAYDKLVADIE 76 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH----HCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh----cCCcEEEEEEEeccHHHHHHHHhhhH
Confidence 389999999999999999999974 69999999996655443322222 246899999999999887766542
Q ss_pred -----CCCcEEEEcccccCccC-----CccChHHHHHHHHHHHHHHHHHHH----hc-----------CCcEEEEeecce
Q 016208 123 -----NAFDAVMHFAAVAYVGE-----STLEPLRYYHNITSNTLVILEAMA----AH-----------KVKTLIYSSTCA 177 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~-----~~~~~~~~~~~n~~~~~~ll~~~~----~~-----------~~~~~V~~SS~~ 177 (393)
.++|++|||||+..... ...+....+++|+.++..+.+.+. +. +..++|++||..
T Consensus 77 ~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~ 156 (248)
T d1snya_ 77 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 156 (248)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 46999999999754332 122245578899999888776653 21 345899999854
Q ss_pred eecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccC
Q 016208 178 TYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIG 231 (393)
Q Consensus 178 vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G 231 (393)
..-. . .+......|+.||.....+.+.++.+ .|+++..+.||.|--
T Consensus 157 g~~~--~------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T 205 (248)
T d1snya_ 157 GSIQ--G------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKT 205 (248)
T ss_dssp GCST--T------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCS
T ss_pred cccC--C------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccC
Confidence 3211 1 11223458999999999998887765 589999999998854
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.73 E-value=3.3e-17 Score=145.08 Aligned_cols=223 Identities=12% Similarity=0.094 Sum_probs=146.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----CCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-----NAF 125 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~ 125 (393)
+++||||++.||.+++++|+++|++|++.+|.....++.. .... .+..+|+.+.+++.+++++ .++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~-~~~~--------~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-AFAE--------TYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH-HHHH--------HCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hhhC--------cEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999887544332221 1111 1223566665554444332 579
Q ss_pred cEEEEcccccCc-cC----CccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCCCCCCCCCCCCCCCC
Q 016208 126 DAVMHFAAVAYV-GE----STLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEPDKMPITESTPQKPI 196 (393)
Q Consensus 126 d~Vi~~A~~~~~-~~----~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~ 196 (393)
|++|||||.... .. ...+....+++|+.++..+.+++ ++.+-.++|++||...+...+ ..
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~-----------~~ 141 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK-----------EL 141 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT-----------TC
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccc-----------cc
Confidence 999999986532 21 22335567779988877766654 455557999999976543221 25
Q ss_pred ChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCcc
Q 016208 197 NPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273 (393)
Q Consensus 197 ~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
..|+.+|...+.+.+.++.+ .|+++..|.||.+-.+.....+... .....+.......+..| +
T Consensus 142 ~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~-------~~~~~~e~~~~~~~~~p-l------ 207 (252)
T d1zmta1 142 STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTE-------PWKTNPEHVAHVKKVTA-L------ 207 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHH-------HHTTCHHHHHHHHHHSS-S------
T ss_pred cccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcc-------cccCCHHHHHHHHhcCC-C------
Confidence 68999999999999988777 6899999999999765432111000 00112223344444333 1
Q ss_pred ccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCC
Q 016208 274 YNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGK 316 (393)
Q Consensus 274 ~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~ 316 (393)
.-+...+|+|+++++++.... --.|+++.+.+|-
T Consensus 208 ---------~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 208 ---------QRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp ---------SSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred ---------CCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCc
Confidence 125678999999999987433 2245788887663
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.3e-16 Score=137.65 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=148.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 122 (393)
-++|.++||||++.||.+++++|+++|++|++++|.....+.. ..++ .........|+.+.+.+.+....
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~---~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ---AKKL---GNNCVFAPADVTSEKDVQTALALAKGK 76 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH---HHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH---HHHh---CCCcccccccccccccccccccccccc
Confidence 3568999999999999999999999999999999865443333 3333 35778888999998776654433
Q ss_pred -CCCcEEEEcccccCccC----------CccChHHHHHHHHHHHHHHHHHHHhc----------CCcEEEEeecceeecC
Q 016208 123 -NAFDAVMHFAAVAYVGE----------STLEPLRYYHNITSNTLVILEAMAAH----------KVKTLIYSSTCATYGE 181 (393)
Q Consensus 123 -~~~d~Vi~~A~~~~~~~----------~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~~V~~SS~~vyg~ 181 (393)
...|.++++++...... ........+++|+.++.++.+++... +..++|++||...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~ 156 (248)
T d2o23a1 77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 156 (248)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC
Confidence 57899999887543221 11234567889999999988887542 2347999999776533
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH
Q 016208 182 PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258 (393)
Q Consensus 182 ~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
.+ ....|+.+|...+.+.+.++.+ .|+++..+.||.+.-+... .+.....+
T Consensus 157 ~~-----------~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~---------------~~~~~~~~ 210 (248)
T d2o23a1 157 QV-----------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT---------------SLPEKVCN 210 (248)
T ss_dssp CT-----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------------------C
T ss_pred CC-----------CchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh---------------cCCHHHHH
Confidence 22 3578999999999999998877 6899999999998654321 11112222
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEe
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNV 312 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni 312 (393)
...+..| +. .-+...+|+|++++++++..- -.|++++|
T Consensus 211 ~~~~~~p---l~------------~R~g~peevA~~v~fL~s~~~-itGq~I~v 248 (248)
T d2o23a1 211 FLASQVP---FP------------SRLGDPAEYAHLVQAIIENPF-LNGEVIRL 248 (248)
T ss_dssp HHHHTCS---SS------------CSCBCHHHHHHHHHHHHHCTT-CCSCEEEE
T ss_pred HHHhcCC---CC------------CCCcCHHHHHHHHHHHHhCCC-CCceEeEC
Confidence 2222222 11 125678999999999887432 23355543
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.72 E-value=2.6e-16 Score=139.24 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=121.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
|.+++||||||++.||.+++++|+++|+ .|++.+|..... +.+.+. ...++.++.+|+++.+++.++++.
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~----~~l~~~--~~~~~~~~~~Dvs~~~~v~~~~~~i~ 74 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA----TELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVG 74 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC----HHHHTC--CCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH----HHHHHh--hCCceEEEEEecCCHHHHHHHHHHHH
Confidence 3458999999999999999999999995 677777743322 222222 235789999999999988766543
Q ss_pred -----CCCcEEEEcccccCc-cCC----ccChHHHHHHHHHHHHHHHHHHH----hc-----------CCcEEEEeecce
Q 016208 123 -----NAFDAVMHFAAVAYV-GES----TLEPLRYYHNITSNTLVILEAMA----AH-----------KVKTLIYSSTCA 177 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~-~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~-----------~~~~~V~~SS~~ 177 (393)
.++|++|||||+... ... .......+++|+.++..+.+.+. +. ...++|.+|+..
T Consensus 75 ~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~ 154 (250)
T d1yo6a1 75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL 154 (250)
T ss_dssp HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred HHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccc
Confidence 249999999997543 111 12345688899999888776653 21 123677777754
Q ss_pred eecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeecccc
Q 016208 178 TYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVI 230 (393)
Q Consensus 178 vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~ 230 (393)
.+-.... ...+..|...|+.||+....+.+.++.+ .|+++..+.||.|-
T Consensus 155 ~~~~~~~----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~ 206 (250)
T d1yo6a1 155 GSITDNT----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQ 206 (250)
T ss_dssp GCSTTCC----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-
T ss_pred ccccCCc----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCC
Confidence 4422111 0122334557999999999999988876 68999999999874
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.9e-16 Score=137.61 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=138.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-------Hh
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-------FA 121 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-------~~ 121 (393)
+|+||||||+|.||+++++.|+++|++|+++++...... .....+..|..+.++..+. +.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKLLG 68 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------------cccceeecccCcHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999987544321 2233444555555444322 22
Q ss_pred hCCCcEEEEcccccCcc-CCc----cChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCC
Q 016208 122 ENAFDAVMHFAAVAYVG-EST----LEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQK 194 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~-~~~----~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 194 (393)
..++|++||+||..... ... ......+++|+.++.++...+... +-.++|++||...+...+
T Consensus 69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~----------- 137 (236)
T d1dhra_ 69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP----------- 137 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------
T ss_pred CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCcc-----------
Confidence 24689999999954321 111 234457889999988888877653 235899999976653322
Q ss_pred CCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCceeE
Q 016208 195 PINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKI 269 (393)
Q Consensus 195 p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
....|+.||...+.+.+.++.+ .|+++..+.||.+.-| + .+.....
T Consensus 138 ~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~-------------------~----~~~~~~~------ 188 (236)
T d1dhra_ 138 GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP-------------------M----NRKSMPE------ 188 (236)
T ss_dssp TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH-------------------H----HHHHSTT------
T ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC-------------------c----chhhCcc------
Confidence 2568999999999999999865 3799999999988643 1 1111111
Q ss_pred cCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEe
Q 016208 270 RGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNV 312 (393)
Q Consensus 270 ~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni 312 (393)
...-.++..+|+++.+..++.... ...|+.+.+
T Consensus 189 ----------~~~~~~~~pe~va~~~~~l~s~~~~~i~G~~i~v 222 (236)
T d1dhra_ 189 ----------ADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQV 222 (236)
T ss_dssp ----------SCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred ----------chhhcCCCHHHHHHHHHHHhCCCccCCCCCeEEE
Confidence 112246789999999999887543 234456655
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=8.5e-16 Score=136.51 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=153.6
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 48 GVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 48 ~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..|+||||||+| .||.++++.|+++|++|++.+|....... +.++.........+..|+.+..+..+.+.+
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR----VEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH----HHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHHHhhcCCcceeecccchHHHHHHHHHHhhh
Confidence 458999999999 79999999999999999999986432222 222222235778889999999887766544
Q ss_pred --CCCcEEEEcccccCccCCc---------cChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGEST---------LEPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITE 189 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~---------~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 189 (393)
...|++||+|+........ ......+..|+.+...+.+.+... +-+.+|++||......
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~-------- 151 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA-------- 151 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB--------
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccC--------
Confidence 4689999999876433211 112334556777777777777654 2346888888654211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCc
Q 016208 190 STPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG 266 (393)
Q Consensus 190 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
......|+.+|...+.+.+.++.+ .|+++..++||.|..+..... ...........+..|
T Consensus 152 ---~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~-------------~~~~~~~~~~~~~~p- 214 (258)
T d1qsga_ 152 ---IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-------------KDFRKMLAHCEAVTP- 214 (258)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHST-
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc-------------chhhhHHHHHHhCCC-
Confidence 123578999999999999998887 579999999999976542210 122333334443333
Q ss_pred eeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCCc
Q 016208 267 LKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGKG 317 (393)
Q Consensus 267 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~~ 317 (393)
+ .-+...+|+|+++.+++.+. ..-.|+++.+.+|..
T Consensus 215 l---------------~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 I---------------RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp T---------------SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred C---------------CCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 1 12567899999999998643 233557888876643
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.68 E-value=1.2e-15 Score=133.48 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=112.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHH-------Hhh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKI-------FAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-------~~~ 122 (393)
.|||||||+|.||.+++++|+++|++|++++|...... .....+.+|..+.+..... +..
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999998643221 2333445666655443322 222
Q ss_pred CCCcEEEEcccccCcc-CCcc----ChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCCCCCCCCCCCCCC
Q 016208 123 NAFDAVMHFAAVAYVG-ESTL----EPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPDKMPITESTPQKP 195 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~-~~~~----~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p 195 (393)
.++|++|||||..... .... .....+++|+.++..+.+.+... +-.++|++||...+...+ .
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~-----------~ 138 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP-----------S 138 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-----------T
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcc-----------c
Confidence 5689999999964332 1222 23346789999988888777654 225899999976553322 2
Q ss_pred CChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeecccc
Q 016208 196 INPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVI 230 (393)
Q Consensus 196 ~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~ 230 (393)
...|+.+|...+.+.+.++.+ .++++..+.|+.+-
T Consensus 139 ~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~ 178 (235)
T d1ooea_ 139 MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLD 178 (235)
T ss_dssp BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBC
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCc
Confidence 578999999999999998866 36788889998874
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.9e-16 Score=142.15 Aligned_cols=179 Identities=16% Similarity=0.076 Sum_probs=127.5
Q ss_pred cEE-EEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh-----
Q 016208 50 THV-LVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 50 ~~I-lItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
|+| +||||++.||.+++++|+++ |+.|++.+|.....+...+.++. ...++.++.+|+++.+++.+++++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 455 99999999999999999986 89999998865444444444433 346789999999999998876655
Q ss_pred CCCcEEEEcccccCccCCcc----ChHHHHHHHHHHHHHHHHHHHhc--CCcEEEEeecceeecCCC-CC----------
Q 016208 123 NAFDAVMHFAAVAYVGESTL----EPLRYYHNITSNTLVILEAMAAH--KVKTLIYSSTCATYGEPD-KM---------- 185 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~--~~~~~V~~SS~~vyg~~~-~~---------- 185 (393)
.++|++|||||+........ +....+++|+.++..+.+.+... .-.++|++||........ ..
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~ 159 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 159 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccc
Confidence 47999999999875433222 23457889999999998888643 224899999965431100 00
Q ss_pred C-------------------CCCCCCCCCCChHHHHHHHHHHHHHHHHhh-------CCCcEEEEeeccccC
Q 016208 186 P-------------------ITESTPQKPINPYGKAKKMSEDIIIDFSKT-------TNMAVMILRYFNVIG 231 (393)
Q Consensus 186 ~-------------------~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~g~~~~ilRp~~v~G 231 (393)
. .....+..|...|+.||.....+.+.++.+ .++++..+.||.|--
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T 231 (275)
T d1wmaa1 160 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 231 (275)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCS
T ss_pred ccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccC
Confidence 0 000123335678999999998877665543 389999999998753
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.1e-15 Score=133.59 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=125.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
..++|++||||||+.||.++++.|+++|++|++++|.....+...+.+... ....+..+.+|+.+.+.+....+.
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL--GAASAHYIAGTMEDMTFAEQFVAQAGK 88 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--TCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh--hcccchhhhhhhhhHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999988543333333322222 134677888999998877765443
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHHHHHHHHHHHHHH----hcCCcEEEEeecceeecCCCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNITSNTLVILEAMA----AHKVKTLIYSSTCATYGEPDKMPITESTP 192 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 192 (393)
..+|+++|+|+....... ..+....+++|+.++..+.+.+. +.+ .++|++||.+.+-.
T Consensus 89 ~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~~~~----------- 156 (269)
T d1xu9a_ 89 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVA----------- 156 (269)
T ss_dssp HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSC-----------
T ss_pred HhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchhcCC-----------
Confidence 479999999997654332 22344577899888777666553 323 58999998765422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-----CCCcEEEEeecccc
Q 016208 193 QKPINPYGKAKKMSEDIIIDFSKT-----TNMAVMILRYFNVI 230 (393)
Q Consensus 193 ~~p~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~ 230 (393)
......|+.||+..+.+.+.++.+ .++++..+.||.|-
T Consensus 157 ~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~ 199 (269)
T d1xu9a_ 157 YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID 199 (269)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCC
Confidence 122679999999999999888765 46899999998874
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.66 E-value=6.6e-15 Score=132.52 Aligned_cols=228 Identities=16% Similarity=0.108 Sum_probs=147.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCC---------------CCccEEEEccCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQ---------------PGQLQFIYADLGD 112 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~Dl~~ 112 (393)
|..++||||++.||++++++|+++|++|++.++..... +...+.+...... ...+....+|+++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence 45789999999999999999999999999887644322 2222233222111 1123345567888
Q ss_pred HHHHHHHHhh-----CCCcEEEEcccccCccCCccC------------------hHHHHHHHHHHHHHHHHHHHhc----
Q 016208 113 AKAVNKIFAE-----NAFDAVMHFAAVAYVGESTLE------------------PLRYYHNITSNTLVILEAMAAH---- 165 (393)
Q Consensus 113 ~~~~~~~~~~-----~~~d~Vi~~A~~~~~~~~~~~------------------~~~~~~~n~~~~~~ll~~~~~~---- 165 (393)
.+++.+++++ .++|++||+||.......... ....+.+|+.+...+.+.+...
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 8888877643 589999999997654322111 1125677888887777765421
Q ss_pred ------CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCC
Q 016208 166 ------KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEG 236 (393)
Q Consensus 166 ------~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~ 236 (393)
+..++|+++|..... +......|+.+|...+.+.+.++.+ .|+++..+.||.+--..
T Consensus 162 ~~~~~~~~~~ii~~~s~~~~~-----------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~--- 227 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDAMTNQ-----------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD--- 227 (284)
T ss_dssp CGGGSCSCEEEEEECCTTTTS-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG---
T ss_pred HHHhcCCCCcccccccccccC-----------CccceeeeccccccchhhhHHHHHHhCCccccccccccccccccc---
Confidence 233677777644321 2223578999999999999998876 68999999998642211
Q ss_pred CCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 237 RLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+...+...+..| +. .-+...+|+|+++++++.... --.|+++.+.+|
T Consensus 228 --------------~~~~~~~~~~~~~~p---l~------------~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG 278 (284)
T d1e7wa_ 228 --------------DMPPAVWEGHRSKVP---LY------------QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 278 (284)
T ss_dssp --------------GSCHHHHHHHHTTCT---TT------------TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------------cCCHHHHHHHHhcCC---CC------------CCCCCHHHHHHHHHHHhCchhcCccCCeEEECcC
Confidence 333445555555443 11 125678999999999887432 234578988777
Q ss_pred Cccc
Q 016208 316 KGRS 319 (393)
Q Consensus 316 ~~~s 319 (393)
..++
T Consensus 279 ~sl~ 282 (284)
T d1e7wa_ 279 YSLT 282 (284)
T ss_dssp GGGC
T ss_pred hhcc
Confidence 5544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=1.5e-14 Score=126.90 Aligned_cols=211 Identities=17% Similarity=0.140 Sum_probs=145.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh----CCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE----NAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~ 125 (393)
|++|||||++.||++++++|+++|++|++++|.... .+.....+|+.+......+... ...
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~---------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 66 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG---------------EDLIYVEGDVTREEDVRRAVARAQEEAPL 66 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS---------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc---------------ccceEeeccccchhhhHHHHHhhhccccc
Confidence 789999999999999999999999999999885321 3566788999988766655433 455
Q ss_pred cEEEEcccccCccC--------CccChHHHHHHHHHHHHHHHHHHHhc----------CCcEEEEeecceeecCCCCCCC
Q 016208 126 DAVMHFAAVAYVGE--------STLEPLRYYHNITSNTLVILEAMAAH----------KVKTLIYSSTCATYGEPDKMPI 187 (393)
Q Consensus 126 d~Vi~~A~~~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~~~~V~~SS~~vyg~~~~~~~ 187 (393)
+.++++++...... ........++.|+.+...+...+... +..++|++||...+-...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~---- 142 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI---- 142 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT----
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCC----
Confidence 66666665432211 11234457788888887777665422 335899999976653322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCC
Q 016208 188 TESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGII 264 (393)
Q Consensus 188 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
....|+.+|...+.+.+.++.+ .|+++..|.||.+--+... ..............
T Consensus 143 -------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~---------------~~~~~~~~~~~~~~ 200 (241)
T d1uaya_ 143 -------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ---------------GLPEKAKASLAAQV 200 (241)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH---------------TSCHHHHHHHHTTC
T ss_pred -------CchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccc---------------hhhhhHHHHHHhcC
Confidence 2578999999999999998876 6899999999998654211 11222223333333
Q ss_pred CceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCCCCCcceEEecCCCc
Q 016208 265 PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKG 317 (393)
Q Consensus 265 ~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~yni~~~~~ 317 (393)
+ +. .-+...+|+|+++++++... --.|+++.+.+|..
T Consensus 201 ~---~~------------~R~g~pedvA~~v~fL~s~~-~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 201 P---FP------------PRLGRPEEYAALVLHILENP-MLNGEVVRLDGALR 237 (241)
T ss_dssp C---SS------------CSCCCHHHHHHHHHHHHHCT-TCCSCEEEESTTCC
T ss_pred C---CC------------CCCcCHHHHHHHHHHHHhCC-CCCCCEEEECCccc
Confidence 2 11 12457899999999998843 33458998866643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.62 E-value=2.8e-14 Score=127.67 Aligned_cols=225 Identities=12% Similarity=0.046 Sum_probs=142.6
Q ss_pred CCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---
Q 016208 48 GVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 48 ~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
+.|++|||||+| .||.+++++|+++|++|++++|... .....+.+. .......+...|+.+.+++.+++++
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIA---QELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHH---HHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHH---hhCCceeEeeecccchhhHHHHHHHHHH
Confidence 468999999987 6999999999999999999998633 222222222 2245677889999999887776644
Q ss_pred --CCCcEEEEcccccCccCC----ccChHHHHHHH----HHHHHHHHHHHHhc-CCc-EEEEeecceeecCCCCCCCCCC
Q 016208 123 --NAFDAVMHFAAVAYVGES----TLEPLRYYHNI----TSNTLVILEAMAAH-KVK-TLIYSSTCATYGEPDKMPITES 190 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~----~~~~~~~~~~n----~~~~~~ll~~~~~~-~~~-~~V~~SS~~vyg~~~~~~~~E~ 190 (393)
..+|++||+++....... .......+..+ ......+....... +.. .++.+|+.+....
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~--------- 150 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY--------- 150 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB---------
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccc---------
Confidence 579999999997643211 11112222222 22233333333322 222 3555555444322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCCCCce
Q 016208 191 TPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL 267 (393)
Q Consensus 191 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
......|+.+|...+.+.+..+.+ .|+++..+.||.+.-+..... .-............|
T Consensus 151 --~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~-------------~~~~~~~~~~~~~~p-- 213 (274)
T d2pd4a1 151 --MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-------------ADFRMILKWNEINAP-- 213 (274)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-------------TTHHHHHHHHHHHST--
T ss_pred --cccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCcccccc-------------CchHHHHHHHhhhhh--
Confidence 223568999999999999887766 689999999998876532110 011222233322222
Q ss_pred eEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEecCCC
Q 016208 268 KIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVGTGK 316 (393)
Q Consensus 268 ~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~~~~ 316 (393)
..-+...+|+|.++.+++... ..-.|+++.+.+|.
T Consensus 214 --------------~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 214 --------------LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp --------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --------------ccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence 123568999999999998753 22345789887664
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.58 E-value=1.4e-14 Score=129.18 Aligned_cols=238 Identities=12% Similarity=0.042 Sum_probs=143.2
Q ss_pred CCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh--
Q 016208 47 PGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE-- 122 (393)
Q Consensus 47 ~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 122 (393)
+..|+||||||+| .||.+++++|+++|++|++++|.. ....+.+.+.. ..+...+.+|+.+.+++..+++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~---~~~~~~~~~~~--~~~~~~~~~dv~~~~~~~~~~~~v~ 78 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR---LRLIQRITDRL--PAKAPLLELDVQNEEHLASLAGRVT 78 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHTTS--SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh---HHHHHHHHHHc--CCceeeEeeecccccccccccchhh
Confidence 4568999999765 599999999999999999987643 22223333322 35678899999999776655433
Q ss_pred ------CCCcEEEEcccccCccC---------CccChHHHHHHHHHHHHHHHHHHHhcC-CcEEEEeecceeecCCCCCC
Q 016208 123 ------NAFDAVMHFAAVAYVGE---------STLEPLRYYHNITSNTLVILEAMAAHK-VKTLIYSSTCATYGEPDKMP 186 (393)
Q Consensus 123 ------~~~d~Vi~~A~~~~~~~---------~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~V~~SS~~vyg~~~~~~ 186 (393)
...|+++|+|+...... ........+..|+.........+.... ....|.++|......
T Consensus 79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~----- 153 (268)
T d2h7ma1 79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA----- 153 (268)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-----
T ss_pred hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccccccc-----
Confidence 35899999999653221 111222344455555555555554332 223444444332221
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHHHHhCC
Q 016208 187 ITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGI 263 (393)
Q Consensus 187 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (393)
......|+.+|...+.+.+.++.+ .|+++..|.||.+-.+.....++..... ........+.+.....
T Consensus 154 ------~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 224 (268)
T d2h7ma1 154 ------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGE---EAGAQIQLLEEGWDQR 224 (268)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCH---HHHHHHHHHHHHHHHH
T ss_pred ------CcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhh---hhccchHHHHHHHHhc
Confidence 112568999999999999988876 6899999999988543100000000000 0001122233333333
Q ss_pred CCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 264 ~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
.| + .+.+..++|+|+++.+++.+.. .-.|+++.+.+|...
T Consensus 225 ~p-l--------------~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 225 AP-I--------------GWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHT 265 (268)
T ss_dssp CT-T--------------CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGGG
T ss_pred CC-C--------------CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCccc
Confidence 22 1 1235678999999999886432 224578888766543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.57 E-value=1.7e-13 Score=121.89 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=138.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCC----HHHHHHHHhh---
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGD----AKAVNKIFAE--- 122 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~--- 122 (393)
..|||||++.||.+++++|+++|++|++++|..... +...+.+.... .........|..+ .+.+.++++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR--AGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS--TTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc--CCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999864332 22233333322 1345555555543 3334333321
Q ss_pred --CCCcEEEEcccccCccCCcc---------------ChHHHHHHHHHHHHHHHHHHHhc---------CCcEEEEeecc
Q 016208 123 --NAFDAVMHFAAVAYVGESTL---------------EPLRYYHNITSNTLVILEAMAAH---------KVKTLIYSSTC 176 (393)
Q Consensus 123 --~~~d~Vi~~A~~~~~~~~~~---------------~~~~~~~~n~~~~~~ll~~~~~~---------~~~~~V~~SS~ 176 (393)
.++|++||+||+........ .....+..|+.+........... ....++.+|+.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 57999999999765432111 11223344544444444433322 12245555554
Q ss_pred eeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccch
Q 016208 177 ATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRIS 253 (393)
Q Consensus 177 ~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
..... ......|+.+|...+.+.+.++.+ .|+++..+.||.+.-+. ...
T Consensus 161 ~~~~~-----------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~-----------------~~~ 212 (266)
T d1mxha_ 161 MTDLP-----------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP-----------------AMP 212 (266)
T ss_dssp GGGSC-----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS-----------------SSC
T ss_pred ccccc-----------CcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc-----------------cCC
Confidence 43322 223678999999999999888776 68999999999986542 222
Q ss_pred HHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCCCcc
Q 016208 254 GACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTGKGR 318 (393)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~~~~ 318 (393)
....+...+..| + + +.+...+|+|.++++++.... --.|+++.+.+|..+
T Consensus 213 ~~~~~~~~~~~p-l-----------~---r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 213 QETQEEYRRKVP-L-----------G---QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLIL 263 (266)
T ss_dssp HHHHHHHHTTCT-T-----------T---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHhcCC-C-----------C---CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHhh
Confidence 334445555443 1 0 224578999999999997542 234578988766443
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.50 E-value=1.8e-12 Score=116.96 Aligned_cols=234 Identities=11% Similarity=-0.002 Sum_probs=141.1
Q ss_pred CCCCCCCcEEEEEcCCC--hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhh------hhhcCCC--Ccc-EEEEcc--
Q 016208 43 PRHEPGVTHVLVTGGAG--YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVL------QELFPQP--GQL-QFIYAD-- 109 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~~~--~~~-~~~~~D-- 109 (393)
++...++|++|||||+| .||.++++.|+++|.+|++.+|............ ....... ... .....|
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 34567779999999987 8999999999999999999877421110000000 0000000 011 122222
Q ss_pred ---------------------CCCHHHHHHHHhh--CCCcEEEEcccccCc--c----CCccChHHHHHHHHHHHHHHHH
Q 016208 110 ---------------------LGDAKAVNKIFAE--NAFDAVMHFAAVAYV--G----ESTLEPLRYYHNITSNTLVILE 160 (393)
Q Consensus 110 ---------------------l~~~~~~~~~~~~--~~~d~Vi~~A~~~~~--~----~~~~~~~~~~~~n~~~~~~ll~ 160 (393)
..+.+.+.+.+.+ .++|++||+||.... . ....+....+++|+.+...+..
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 2222332222211 589999999986421 1 1223355678899999999988
Q ss_pred HHHhcC--CcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccccCCCC
Q 016208 161 AMAAHK--VKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNVIGSDP 234 (393)
Q Consensus 161 ~~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G~~~ 234 (393)
++.... -.+.+.+++.+.... .......|+.+|...+.+.+..+.+ .|+++..|.||.+..+..
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~ 231 (297)
T d1d7oa_ 162 HFLPIMNPGGASISLTYIASERI----------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA 231 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSC----------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred HHHHHhhcCCcceeeeehhhccc----------ccccccceecccccccccccccchhccccceEEecccccccccchhh
Confidence 886542 124555555333211 1123568999999888877665443 589999999999976642
Q ss_pred CCCCCCCCCCcccccccchHHHHHHHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcC-CCCCcceEEec
Q 016208 235 EGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANA-KPGKVGIYNVG 313 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~yni~ 313 (393)
... .....+.+...+..| + ..+...+|+|.++++++... .--.|+++.+.
T Consensus 232 ~~~-------------~~~~~~~~~~~~~~P-l---------------gR~~~peevA~~v~fL~S~~a~~itGq~i~vD 282 (297)
T d1d7oa_ 232 KAI-------------GFIDTMIEYSYNNAP-I---------------QKTLTADEVGNAAAFLVSPLASAITGATIYVD 282 (297)
T ss_dssp SCC-------------SHHHHHHHHHHHHSS-S---------------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred hhc-------------cCCHHHHHHHHhCCC-C---------------CCCCCHHHHHHHHHHHhCchhcCCcCceEEEC
Confidence 210 233445555554444 1 12567899999999998643 22345788886
Q ss_pred CC
Q 016208 314 TG 315 (393)
Q Consensus 314 ~~ 315 (393)
+|
T Consensus 283 GG 284 (297)
T d1d7oa_ 283 NG 284 (297)
T ss_dssp TT
T ss_pred cC
Confidence 65
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.45 E-value=2.6e-12 Score=113.41 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=126.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh------
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE------ 122 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------ 122 (393)
||.|+||||++.||.+++++|+++|++|++++|..... ..|+.+.+.......+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~--------------------~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV--------------------IADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE--------------------ECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH--------------------HHHhcCHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999998743221 2466666554433221
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecceeecCC-CCCCCC---------
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM----AAHKVKTLIYSSTCATYGEP-DKMPIT--------- 188 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~V~~SS~~vyg~~-~~~~~~--------- 188 (393)
..+|+++|+|+.... .........+|..+...+.+.. .+........+++....... ...+..
T Consensus 61 ~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 137 (257)
T d1fjha_ 61 KGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEA 137 (257)
T ss_dssp TCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHH
T ss_pred CCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEE
Confidence 359999999987543 3344556667777766655443 33344445555543222110 000000
Q ss_pred -------CCCCCCCCChHHHHHHHHHHHHHHHHhh---CCCcEEEEeeccccCCCCCCCCCCCCCCcccccccchHHHHH
Q 016208 189 -------ESTPQKPINPYGKAKKMSEDIIIDFSKT---TNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFD 258 (393)
Q Consensus 189 -------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
......+..+|+.+|...+.+.+.++.+ .|+++..+.||.+-.+.....+. -+...+
T Consensus 138 ~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-------------~~~~~~ 204 (257)
T d1fjha_ 138 KARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ-------------DPRYGE 204 (257)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------------------------
T ss_pred EEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC-------------CHHHHH
Confidence 0001112336999999999999988766 68999999999986553211000 000111
Q ss_pred HHhCCCCceeEcCccccCCCCccccccccHHHHHHHHHHHHhcCC-CCCcceEEecCC
Q 016208 259 AARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAK-PGKVGIYNVGTG 315 (393)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~yni~~~ 315 (393)
...+.. ....-+...+|+|+++.+++.... --.|+++.+.+|
T Consensus 205 ~~~~~~---------------~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 205 SIAKFV---------------PPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp ----CC---------------CSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHhcC---------------CCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCC
Confidence 111111 011235678999999999986432 234578888555
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.39 E-value=1.1e-11 Score=113.48 Aligned_cols=170 Identities=11% Similarity=-0.023 Sum_probs=107.7
Q ss_pred cEEEEEc--CCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhh---------hhhhhcCCCCccEEEEc----------
Q 016208 50 THVLVTG--GAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVK---------VLQELFPQPGQLQFIYA---------- 108 (393)
Q Consensus 50 ~~IlItG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------- 108 (393)
+.+|||| ++..||.++++.|.++|.+|++..+.......... .+...............
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTANDI 82 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGGC
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhccc
Confidence 6899999 55699999999999999999988764321110000 00000000011223333
Q ss_pred ----------cCCCHHHHHHHHhh-----CCCcEEEEcccccCcc------CCccChHHHHHHHHHHHHHHHHHHHhc--
Q 016208 109 ----------DLGDAKAVNKIFAE-----NAFDAVMHFAAVAYVG------ESTLEPLRYYHNITSNTLVILEAMAAH-- 165 (393)
Q Consensus 109 ----------Dl~~~~~~~~~~~~-----~~~d~Vi~~A~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~-- 165 (393)
|+.+.+++..+++. .++|++||+||..... ....+....+++|+.+...+.+.+...
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m~ 162 (329)
T d1uh5a_ 83 DEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMK 162 (329)
T ss_dssp CHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhcc
Confidence 33333222222211 6899999999865321 122345667889988888888887654
Q ss_pred CCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----CCCcEEEEeeccc
Q 016208 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKT----TNMAVMILRYFNV 229 (393)
Q Consensus 166 ~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v 229 (393)
.-.++|.+||.+....- +.....|+.+|...+.+.+.++.+ +|+++..|.||.|
T Consensus 163 ~~GsIv~iss~~~~~~~----------p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 163 PQSSIISLTYHASQKVV----------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp EEEEEEEEECGGGTSCC----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred cccccccceeehhcccc----------cccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 23478888885543211 112457999999999999887755 4899999999977
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.17 E-value=7.6e-12 Score=105.22 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
...|+|+||||+|.||+.+++.|+++|.+|++++|.........+.+... .++....+|+.+.+++.+++ .++|
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~--~~iD 94 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR----FKVNVTAAETADDASRAEAV--KGAH 94 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----HTCCCEEEECCSHHHHHHHT--TTCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc----cchhhhhhhcccHHHHHHHh--cCcC
Confidence 45599999999999999999999999999999998654444444444332 45677889999999999999 7899
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+||+.
T Consensus 95 ilin~Ag~g 103 (191)
T d1luaa1 95 FVFTAGAIG 103 (191)
T ss_dssp EEEECCCTT
T ss_pred eeeecCccc
Confidence 999999864
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.39 E-value=5.6e-07 Score=70.97 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
..|||.|+|+ |++|..++..|+.+| .||..+++...........+..............+|.. .+ .++
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-------~~--~~a 73 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-------DC--KDA 73 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-------GG--TTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-------Hh--ccc
Confidence 3479999995 999999999999987 69999987432222222223222112234455666642 24 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+||.+||.... ........+..|+.-.+.+++.+.+.+.+-+|.+-|
T Consensus 74 divvitag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 74 DLVVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cEEEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 999999986533 234556677899999999999999887665555554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.39 E-value=1.1e-06 Score=68.17 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=56.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+|+|+|+ |.+|+.|++.|.+.|++|++++.... ..+.+.+. .+..++.||..+++.+.++-- ..+|.++
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~----~~~~~~~~----~~~~vi~Gd~~~~~~l~~~~i-~~a~~vv 70 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD----ICKKASAE----IDALVINGDCTKIKTLEDAGI-EDADMYI 70 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH----CSSEEEESCTTSHHHHHHTTT-TTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChh----hhhhhhhh----hhhhhccCcccchhhhhhcCh-hhhhhhc
Confidence 79999996 99999999999999999999976332 22222221 367899999999999998733 5788888
Q ss_pred Ecc
Q 016208 130 HFA 132 (393)
Q Consensus 130 ~~A 132 (393)
-+.
T Consensus 71 ~~t 73 (132)
T d1lssa_ 71 AVT 73 (132)
T ss_dssp ECC
T ss_pred ccC
Confidence 653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.16 E-value=6e-06 Score=64.72 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=76.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCC--chhhhhhhhhc-CCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGN--MGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
|||.|+||+|.+|++++..|..+| .++..+++..... ......+.... ......+....--.+. +.+ .+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l--~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RII--DE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGG--TT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHh--cc
Confidence 689999999999999999999998 4999988742111 11222233321 1123333322211122 234 78
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
+|+||-+||.... ........+..|+.-.+.+++...+.+.+.++.+
T Consensus 75 aDvVVitAG~~~~--~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 75 SDVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ceEEEEecccccC--CCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 9999999996532 2345677899999999999999988865555444
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.16 E-value=6.9e-06 Score=64.28 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=76.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
||.|+||+|.+|++++..|..+|. ++..++... .......+... ........-+ ...+..+.+ .++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~--~~~~a~Dl~~~----~~~~~~~~~~-~~~~~~~~~--~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHI----ETRATVKGYL-GPEQLPDCL--KGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTS----SSSCEEEEEE-SGGGHHHHH--TTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc--cchhhHHHhhh----hhhcCCCeEE-cCCChHHHh--CCCCEE
Confidence 799999999999999999998874 788887632 12112222211 1111112222 233445666 799999
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|.+||.... ........++.|+...+.+++.+.+++.+-+|.+-|
T Consensus 73 Vitag~~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCCC--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999996432 234567789999999999999999987655555544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.10 E-value=2e-05 Score=61.49 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=74.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+||.|+|+ |.+|+.++..|+.+|. |+..+++...........+.+............+|. +.+ .++|+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~-------~~~--~~adi 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY-------SDV--KDCDV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG-------GGG--TTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcH-------HHh--CCCce
Confidence 58999996 9999999999999874 899998766554444444443322223333333432 234 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
||-+||.... ........+..|+.-.+.+++.+.+.+.+-++.+-|
T Consensus 72 vvitag~~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEecccccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 9999996533 245567788999999999999999886544444333
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.00 E-value=2.6e-05 Score=60.62 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=76.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCC--chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGN--MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
||.|+||+|.+|++++..|..+|. ++..++...... ......+..............+|.. .+ .++|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-------~~--~~aD 72 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE-------DT--AGSD 72 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG-------GG--TTCS
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH-------Hh--hhcC
Confidence 899999999999999999999975 788887522211 1122223321122344555556542 24 6999
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
+||-+||.... ........++.|+.-.+.+.+...+.+.+-++.
T Consensus 73 iVvitaG~~~~--~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~i 116 (142)
T d1o6za1 73 VVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116 (142)
T ss_dssp EEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEE
T ss_pred EEEEecccccc--cCCchhhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 99999996532 234677899999999999999999886544443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=3.5e-05 Score=60.20 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=74.1
Q ss_pred cEEEEEcCCChhHHHHHHHHH-HC--CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLL-KD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~-~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|||.|+|++|.+|++++..|. +. +.++..++.. +........+...... .....+ ..-.+. +.+ .+.|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~-~~~~g~a~Dl~h~~~~-~~~~~~-~~~~~~----~~~--~~aD 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA-PVTPGVAVDLSHIPTA-VKIKGF-SGEDAT----PAL--EGAD 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS-TTHHHHHHHHHTSCSS-CEEEEE-CSSCCH----HHH--TTCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc-ccchhHHHHHHCCccc-cCCcEE-EcCCCc----ccc--CCCC
Confidence 789999999999999998875 43 4789998763 2222222223332111 122222 222233 235 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~S 174 (393)
+||.+||...- ........+..|..-.+.+.+.+.+.+.+. +|.+|
T Consensus 72 vvvitaG~~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 72 VVLISAGVRRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEECCCccCC--CCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 99999997532 344667788999999999999999886544 44444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=2.5e-05 Score=60.78 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=76.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
|||.|+|+ |.+|++++..|+.++ .++..+++...........+..............+|. +.+ .++|+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~-------~~~--~~adi 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-------ADL--KGSDV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-------GGG--TTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH-------HHh--cCCCE
Confidence 68999996 999999999998886 5899887653322222222222211123445555553 224 78999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
||-+||.... ........+..|..-.+.+++...+.+.+-++.+-|
T Consensus 71 vvitag~~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 71 VIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEecccccC--CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9999987543 234566788899999999999999887555555544
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=2.2e-05 Score=61.38 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC----CeEEEEeC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS----YRVTIVDN 81 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g----~~V~~~~r 81 (393)
|+||.|+||||++|+.+++.|+++. .+++.+.+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~s 37 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFST 37 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeec
Confidence 7899999999999999999888763 26666654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.95 E-value=9.9e-06 Score=65.77 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=54.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
++|+|+|| |.+|+++++.|.+.||+|++++|.........+ ..........+..+.......+ ...|.++
T Consensus 3 K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~-------~~~~~~~~~~~~~~~~~~~~~i--~~~~~~i 72 (182)
T d1e5qa1 3 KSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA-------GVQHSTPISLDVNDDAALDAEV--AKHDLVI 72 (182)
T ss_dssp CEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT-------TCTTEEEEECCTTCHHHHHHHH--TTSSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh-------cccccccccccccchhhhHhhh--hccceeE
Confidence 79999996 999999999999999999999885443222211 1244555566777788888888 6788888
Q ss_pred Ecc
Q 016208 130 HFA 132 (393)
Q Consensus 130 ~~A 132 (393)
.+.
T Consensus 73 ~~~ 75 (182)
T d1e5qa1 73 SLI 75 (182)
T ss_dssp ECS
T ss_pred eec
Confidence 654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=4.8e-05 Score=56.40 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
...||.|+| .|++|+.++....+.|++|++++......... -.-.++.+|..|.+.+.++....++|+
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~-----------va~~~i~~~~~d~~~l~~~~~~~~~Dv 77 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMH-----------VAHRSHVINMLDGDALRRVVELEKPHY 77 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGG-----------GSSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhh-----------cCCeEEECCCCCHHHHHHHHHhhCCce
Confidence 446999999 69999999999999999999998754433210 133678899999999999886667899
Q ss_pred EEE
Q 016208 128 VMH 130 (393)
Q Consensus 128 Vi~ 130 (393)
|-.
T Consensus 78 iT~ 80 (111)
T d1kjqa2 78 IVP 80 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.91 E-value=3.8e-05 Score=60.33 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=76.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
..+||.|+|+ |++|++++..|+..|. |+..+++...........+.+... ....+.+..+|. +.+ .+
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l--~d 74 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDC--RD 74 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGT--TT
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHh--cc
Confidence 4479999996 9999999999998874 899988643322222223333211 123445555554 234 78
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
+|+||.+||.... ........+..|+.-.+.+++.+.+.+.+.++.+
T Consensus 75 aDvvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~iv 121 (148)
T d1ldna1 75 ADLVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV 121 (148)
T ss_dssp CSEEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred ceeEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 9999999987533 2345567788999999999999988865444433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.90 E-value=1.1e-05 Score=64.02 Aligned_cols=121 Identities=15% Similarity=0.049 Sum_probs=76.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
.+.+||.|+|+ |.+|+.++..|...+. ++.+++............+..... ..........+ +. .+.+ .+
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~--~~---~~~~--~~ 76 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEY--SY---EAAL--TG 76 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEEC--SH---HHHH--TT
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccC--ch---hhhh--cC
Confidence 34579999997 9999999988888774 888887644333333333322110 01111111111 11 3455 79
Q ss_pred CcEEEEcccccCccCC---ccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 125 FDAVMHFAAVAYVGES---TLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+|+|+-+|+....+.. .......+..|+.-.+.+++.+.+.+.+-+|.+-|
T Consensus 77 adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 77 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999999987533211 12456678899999999999999887665555544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.80 E-value=0.00015 Score=58.38 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHC---C--C--eEEEEeCCCCCCchhhhhh-hhhcCCC-CccE-EEEccCCCHHHH
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKD---S--Y--RVTIVDNLSRGNMGAVKVL-QELFPQP-GQLQ-FIYADLGDAKAV 116 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~---g--~--~V~~~~r~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~Dl~~~~~~ 116 (393)
.+..||.|+||+|.||++++..|.+. | . ++..++. +......+.+ .++.... .... .+.++ + .
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di--~~~~~~l~g~~mdl~d~a~~~~~~~~~~~--~---~ 94 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS--ERSFQALEGVAMELEDSLYPLLREVSIGI--D---P 94 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEES--C---H
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC--ccccchhcchhhhhcccccccccCccccc--c---c
Confidence 34468999999999999999999875 2 2 3344433 2222211111 1111111 1222 22221 2 2
Q ss_pred HHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCC-c-EEEEee
Q 016208 117 NKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV-K-TLIYSS 174 (393)
Q Consensus 117 ~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~-~~V~~S 174 (393)
.+.+ .+.|+||-+||... .........+..|+.-.+.+.+++.+... . +++.+|
T Consensus 95 ~~~~--~~aDvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 95 YEVF--EDVDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp HHHT--TTCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hhhc--cCCceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 4556 79999999998753 34567788999999999999999988532 2 455554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.79 E-value=0.00025 Score=55.88 Aligned_cols=119 Identities=18% Similarity=0.077 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC----eEEEEe-CCCCCCchhhhh-hhhhcCC-CCccEEEEccCCCHHHHHHHH
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY----RVTIVD-NLSRGNMGAVKV-LQELFPQ-PGQLQFIYADLGDAKAVNKIF 120 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~----~V~~~~-r~~~~~~~~~~~-~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~ 120 (393)
+.|||.|+||+|++|++++..|...+. +.+.+. -........... ..++... ......+...-.+ .+.+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 78 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDP----KVAF 78 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCH----HHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCch----hhhc
Confidence 348999999999999999999988752 111111 111112211111 1111111 1223333332212 3456
Q ss_pred hhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcC-Cc-EEEEee
Q 016208 121 AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-VK-TLIYSS 174 (393)
Q Consensus 121 ~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~~V~~S 174 (393)
.+.|+||-+||...- ...+....+..|+.-.+.+.+.+.+.. .. .++.+|
T Consensus 79 --~~advViitaG~~~~--pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 79 --KDADYALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp --TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred --ccccEEEeecCcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 799999999997532 345677788999999999999998853 22 344444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.79 E-value=4.5e-05 Score=58.73 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=54.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|+++|+|+ |.+|+++++.|.++|++|++++.... ..+.+. ..+...+.+|.++++.+.++-- .++|.||
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~----~~~~~~-----~~~~~~~~gd~~~~~~l~~a~i-~~a~~vi 69 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE----KVNAYA-----SYATHAVIANATEENELLSLGI-RNFEYVI 69 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH----HHHHTT-----TTCSEEEECCTTCTTHHHHHTG-GGCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHH----HHHHHH-----HhCCcceeeecccchhhhccCC-ccccEEE
Confidence 47899985 99999999999999999999976322 112221 2466788999999999988722 5788877
Q ss_pred Ecc
Q 016208 130 HFA 132 (393)
Q Consensus 130 ~~A 132 (393)
-+.
T Consensus 70 ~~~ 72 (134)
T d2hmva1 70 VAI 72 (134)
T ss_dssp ECC
T ss_pred EEc
Confidence 554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.78 E-value=9.7e-05 Score=57.41 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=75.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.||.|+|+ |.+|++++..|..+|. |+..+++...........+...............+ +. +.+ .++|+
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~----~~~--~daDv 72 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DP----EIC--RDADM 72 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CG----GGG--TTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CH----HHh--hCCcE
Confidence 58999996 9999999999998875 89998764322222222233321112233443332 12 224 68999
Q ss_pred EEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
||-+||.... ........+..|..-.+.++..+.+.+.+-++.+-|
T Consensus 73 VVitaG~~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 73 VVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEecccccC--CCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999997543 345566788999999999999998887544444333
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=0.00011 Score=57.79 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 43 PRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 43 ~~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
......|+||.|+||.|.+|+.+++.|.+.||+|.+++|....... ..+. ...+.+....+.....+...+..
T Consensus 3 ~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~--~~~~-----~~~~v~~~~~~~~~~~v~~~~~~ 75 (152)
T d2pv7a2 3 KTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE--SILA-----NADVVIVSVPINLTLETIERLKP 75 (152)
T ss_dssp CCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH--HHHT-----TCSEEEECSCGGGHHHHHHHHGG
T ss_pred cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc--hhhh-----hccccccccchhhheeeeecccc
Confidence 3455678999999999999999999999999999999885433221 1111 13444444454444443333322
Q ss_pred -C-CCcEEEEcccc
Q 016208 123 -N-AFDAVMHFAAV 134 (393)
Q Consensus 123 -~-~~d~Vi~~A~~ 134 (393)
. .=.+|+++++.
T Consensus 76 ~~~~~~iiiD~~Sv 89 (152)
T d2pv7a2 76 YLTENMLLADLTSV 89 (152)
T ss_dssp GCCTTSEEEECCSC
T ss_pred cccCCceEEEeccc
Confidence 1 22477777654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.75 E-value=0.00014 Score=57.58 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=75.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+||.|+|+ |.+|+.++..|..+|. |+..+++...........+..... .........+|.. .+ .++|
T Consensus 21 ~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~-------~~--~~ad 90 (160)
T d1i0za1 21 NKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS-------VT--ANSK 90 (160)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG-------GG--TTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh-------hc--cccc
Confidence 69999995 9999999999999986 899987743333222233332111 1112222334432 24 7899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcE-EEEee
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-LIYSS 174 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~-~V~~S 174 (393)
+||..||.... ...+....++.|+.-.+.++....+.+.+- +|.+|
T Consensus 91 iVVitAg~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 91 IVVVTAGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp EEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEEecCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999997543 234556788899999999999999887554 44444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.73 E-value=0.00014 Score=56.57 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=74.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhc-CCCCccEEE-EccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFI-YADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~ 125 (393)
|||.|+|| |.+|++++..|+..| .++..+++...........+.... .......+. ..|. +.+ .++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~-------~~~--~da 70 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY-------ADT--ANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG-------GGG--TTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH-------HHh--cCC
Confidence 68999996 999999999999987 599998875433222221221110 001233333 2332 234 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+||-+||...- ........+..|+.-...+++.+.+.+.+-++.+-|
T Consensus 71 dvvvitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 71 DIVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred eEEEEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 999999986532 234567788899999999999998876554554433
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.67 E-value=0.00011 Score=57.00 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=75.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEE-ccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIY-ADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~-~Dl~~~~~~~~~~~~~~~ 125 (393)
|||.|+|+ |.+|.+++..|..+| .|+..+++...........+.+... ......... .|. +.+ .++
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-------~~~--~~a 70 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-------SLL--KGS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-------GGG--TTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-------HHh--ccc
Confidence 78999996 999999999999887 4899887643222222222322111 112223332 343 234 789
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
|+||-.||.... ........+..|..-...+.+.+.+.+.+-++.+-|
T Consensus 71 diVvitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 71 EIIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp SEEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cEEEEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 999999986533 344677788899999999999999887555555544
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.65 E-value=1.2e-05 Score=66.24 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
|||.|+||+|.+|++|++.|++.||+|.+.+|...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 68999999999999999999999999999988543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.61 E-value=2.9e-05 Score=60.66 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC---eEEEEe
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY---RVTIVD 80 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~ 80 (393)
.|+|.|.||||++|+.|++.|.+++| ++..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~ 36 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 36 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe
Confidence 48999999999999999999987654 666654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.57 E-value=8.7e-05 Score=60.22 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=28.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEe
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVD 80 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~ 80 (393)
|+||.|.||||++|+.|++.|.++ ..++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 899999999999999999999998 45776553
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00019 Score=60.16 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCCCcEEEEEcC----------------CChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEcc
Q 016208 46 EPGVTHVLVTGG----------------AGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 46 ~~~~~~IlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 109 (393)
...+++||||+| ||..|.+|+++|..+|++|+++.-...... +..+..+..
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~------------p~~~~~~~~- 69 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT------------PPFVKRVDV- 69 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC------------CTTEEEEEC-
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc------------cccccccee-
Confidence 345689999975 899999999999999999999875433211 235555544
Q ss_pred CCCHHHHHHHHhh--CCCcEEEEcccccCcc
Q 016208 110 LGDAKAVNKIFAE--NAFDAVMHFAAVAYVG 138 (393)
Q Consensus 110 l~~~~~~~~~~~~--~~~d~Vi~~A~~~~~~ 138 (393)
...+++.+.+.+ ..+|++|++|++.++.
T Consensus 70 -~t~~~m~~~~~~~~~~~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 70 -MTALEMEAAVNASVQQQNIFIGCAAVADYR 99 (223)
T ss_dssp -CSHHHHHHHHHHHGGGCSEEEECCBCCSEE
T ss_pred -hhhHHHHHHHHhhhccceeEeeeechhhhh
Confidence 344444333321 5799999999998764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.49 E-value=0.00019 Score=55.88 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=73.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
+||.|+|+ |.+|..++..|+.+| .++..+++...........+.+.. ..........+|. +.+ .++|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-------~~l--~~ad 71 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AAL--ADAD 71 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGG--TTCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-------HHh--cccc
Confidence 68999995 999999999999887 489888764332222222233221 1123344555553 224 7899
Q ss_pred EEEEcccccCccC--CccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGE--STLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+||-+||...... ........+..|+.-.+.+.+.+.+.+.+-++.+-|
T Consensus 72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999998653211 111233467789999999999999887555555444
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.48 E-value=9.4e-05 Score=60.17 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.+.+|||+||+|.+|...++.....|.+|++++++.. ..+.+..+ .....+..-|-...+.+.+.....++|+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~----~~~~~~~~---Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYLKQI---GFDAAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHT---TCSEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH----HHHHHHhh---hhhhhcccccccHHHHHHHHhhcCCCce
Confidence 3579999999999999999999999999999986432 22333332 1222233345445566666666678999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||++.|
T Consensus 102 v~D~vG 107 (182)
T d1v3va2 102 YFDNVG 107 (182)
T ss_dssp EEESSC
T ss_pred eEEecC
Confidence 999987
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=0.00016 Score=57.11 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=73.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCCCCCCchhhhhhhhhcCCCC-ccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPG-QLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
...||.|+|+ |.+|++++..|..+|. |+..+++...........+........ .......|. +.+ .+
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~--~~ 87 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVS--AN 87 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGG--TT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhh--cc
Confidence 3368999995 9999999999999875 899987643332223333333221112 222333443 223 68
Q ss_pred CcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
+|+||-+||....+ .......++.|+.-.+.++....+.+.+-++.+
T Consensus 88 adivvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~iviv 134 (159)
T d2ldxa1 88 SKLVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIV 134 (159)
T ss_dssp EEEEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEE
T ss_pred ccEEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999875432 234455678899999999888887765444443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.41 E-value=0.00047 Score=54.68 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=64.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhh-------hhhhcCCCCccEEEEccCCCHHHHHHHHh
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV-------LQELFPQPGQLQFIYADLGDAKAVNKIFA 121 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 121 (393)
|++|.|+| .|.+|..+++.|++.||+|.+.+|........... ..+. ......+..-+.+.+.+.+++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~---~~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA---VQGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH---HTSCSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhh---ccccCeeeecccchhhHHHHHh
Confidence 78999998 89999999999999999999998753322211110 0111 0234455555566666665542
Q ss_pred h--------CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 122 E--------NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 122 ~--------~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
. ..=++||++.... ...+..+.+.+++.++ +|+-
T Consensus 77 ~~~~~~~~l~~g~iiid~st~~----------------p~~~~~~~~~~~~~gi-~~~d 118 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLECSTIA----------------PTSARKIHAAARERGL-AMLD 118 (162)
T ss_dssp STTCHHHHSCTTCEEEECSCCC----------------HHHHHHHHHHHHHTTC-EEEE
T ss_pred ccccccccCCCCCEEEECCCCC----------------HHHHHHHHHHHHHCCC-cEEe
Confidence 1 1235777776542 1235667777888777 5664
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.39 E-value=0.00026 Score=55.80 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=67.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-----C--eEEEEeCCCCCCchhhhhhh-hhc-CCCCccEEEEccCCCHHHHHHH
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-----Y--RVTIVDNLSRGNMGAVKVLQ-ELF-PQPGQLQFIYADLGDAKAVNKI 119 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~~~-~~~-~~~~~~~~~~~Dl~~~~~~~~~ 119 (393)
.|||.|+||+|.+|++++..|...+ . ++..++. .......+.+. ++. ........+.+-- + ..+.
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~---~~~~ 76 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI--TPMMGVLDGVLMELQDCALPLLKDVIATD-K---EEIA 76 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHHTCCTTEEEEEEES-C---HHHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC--ccchhhhhhhhhhhcccccccccccccCc-c---cccc
Confidence 4899999999999999999998653 2 2333332 22222222221 110 1112222222211 1 1345
Q ss_pred HhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhc-CCc-EEEEee
Q 016208 120 FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH-KVK-TLIYSS 174 (393)
Q Consensus 120 ~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~~V~~S 174 (393)
+ .++|+||-+||....+ .......+..|+.-.+.+.+.+.+. +-. .+|.+|
T Consensus 77 ~--~~~dvVVitag~~~~~--g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 77 F--KDLDVAILVGSMPRRD--GMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp T--TTCSEEEECCSCCCCT--TCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred c--CCceEEEEecccCCCC--CCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 5 7899999999875432 3345567889999999999888765 433 344444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.34 E-value=0.00023 Score=55.30 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=53.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-C---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-Y---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
|||.|.||||++|+.|++.|+++. | ++..++.+. ...... ... .+. ....+..+. ..+ .++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~-~~gk~~----~~~---~~~-~~~~~~~~~----~~~--~~~ 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAP----NFG---KDA-GMLHDAFDI----ESL--KQL 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSC-CSSBCC----CSS---SCC-CBCEETTCH----HHH--TTC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccc-cccccc----ccC---Ccc-eeeecccch----hhh--ccc
Confidence 689999999999999999988753 3 555544321 111110 000 111 111122233 224 689
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc-EEEEeecc
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK-TLIYSSTC 176 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~V~~SS~ 176 (393)
|+||.+.... -+..+...+.+.|.+ .+|=.|+.
T Consensus 66 DvvF~alp~~------------------~s~~~~~~l~~~g~~~~VIDlSsd 99 (147)
T d1mb4a1 66 DAVITCQGGS------------------YTEKVYPALRQAGWKGYWIDAAST 99 (147)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTCCSEEEESSST
T ss_pred cEEEEecCch------------------HHHHHhHHHHHcCCceEEEeCCcc
Confidence 9999887421 134566666777764 46667774
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.0002 Score=56.97 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=32.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGN 86 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 86 (393)
|||+|+|+ |.+|+.++..|.+.|++|.+++|.....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 79999996 9999999999999999999999865543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.32 E-value=0.00049 Score=52.16 Aligned_cols=73 Identities=11% Similarity=0.177 Sum_probs=52.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||.|.|++|-+|+.|++.+.++|+++.+..- .... +.+ .++|+||
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id--~~~~------------------------------~~~--~~~DVvI 46 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD--VNGV------------------------------EEL--DSPDVVI 46 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEE--TTEE------------------------------EEC--SCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEEC--CCcH------------------------------HHh--ccCCEEE
Confidence 68999999999999999999999998876321 0000 002 5789999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
....+. ++...++.|.++++ .+|.-+|
T Consensus 47 DFS~p~------------------~~~~~l~~~~~~~~-p~ViGTT 73 (128)
T d1vm6a3 47 DFSSPE------------------ALPKTVDLCKKYRA-GLVLGTT 73 (128)
T ss_dssp ECSCGG------------------GHHHHHHHHHHHTC-EEEECCC
T ss_pred EecCHH------------------HHHHHHHHHHhcCC-CEEEEcC
Confidence 886432 35678899999987 4555444
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.30 E-value=0.0002 Score=57.54 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEe
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 80 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~ 80 (393)
|+||.|+||||++|+.|++.|.++- .++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 7999999999999999999999875 4666664
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0002 Score=57.72 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=51.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+.+|||+||+|.+|...++.+...|.+|++++++. +..+.++++ +...+ .|..+. +.+.+.....++
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~----~~~~~~~~~-----Ga~~v-i~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE----EGQKIVLQN-----GAHEV-FNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHT-----TCSEE-EETTSTTHHHHHHHHHCTTCE
T ss_pred CCEEEEEeccccccccccccccccCcccccccccc----ccccccccc-----Ccccc-cccccccHHHHhhhhhccCCc
Confidence 46899999999999999999999999999987632 222333333 22211 244443 334444444679
Q ss_pred cEEEEccc
Q 016208 126 DAVMHFAA 133 (393)
Q Consensus 126 d~Vi~~A~ 133 (393)
|+||++.+
T Consensus 99 d~v~d~~g 106 (174)
T d1yb5a2 99 DIIIEMLA 106 (174)
T ss_dssp EEEEESCH
T ss_pred eEEeeccc
Confidence 99999876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.28 E-value=0.00028 Score=56.17 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=29.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|||.|+| .|.+|+.+++.|.+.|++|++++|.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6899998 6999999999999999999999874
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.28 E-value=0.00095 Score=52.01 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=74.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcC-CCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFP-QPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+||.|+|+ |.+|++++..|...+ .++..+++...........+..... ..........+ +. +.+ .+.|+
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~--~~adv 74 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDL--AGADV 74 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGG--TTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----ccc--CCCcE
Confidence 58999995 999999998887776 4888887744333333333322110 01222333222 11 234 68999
Q ss_pred EEEcccccCccCC---ccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 128 VMHFAAVAYVGES---TLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 128 Vi~~A~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
||-+|+....... .......+..|+.-.+.+++.+.+.+.+-+|.+-|
T Consensus 75 vvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 75 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999996543211 12356678999999999999999887555555444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.27 E-value=0.00027 Score=56.71 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=49.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
..+|+|+||+|-+|...++.+...|.+|++++++.... +.+.++ +.+.+ .|..+.. .+.-...++|+|
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~----~~~~~l-----Ga~~~-i~~~~~~--~~~~~~~g~D~v 95 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL----ALPLAL-----GAEEA-ATYAEVP--ERAKAWGGLDLV 95 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS----HHHHHT-----TCSEE-EEGGGHH--HHHHHTTSEEEE
T ss_pred CCEEEEEeccccchhhhhhhhccccccccccccccccc----cccccc-----cccee-eehhhhh--hhhhcccccccc
Confidence 46899999999999999999999999999988743222 222332 22222 2333332 222333789999
Q ss_pred EEccc
Q 016208 129 MHFAA 133 (393)
Q Consensus 129 i~~A~ 133 (393)
|++.|
T Consensus 96 ~d~~G 100 (171)
T d1iz0a2 96 LEVRG 100 (171)
T ss_dssp EECSC
T ss_pred ccccc
Confidence 99876
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.0006 Score=53.97 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=61.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC----CCccEEEEccCCCHHHHHHHHhh---
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ----PGQLQFIYADLGDAKAVNKIFAE--- 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~--- 122 (393)
|||.|+| .|.+|..+++.|++.||+|++.+|.........+........ ..+.+++..=+.+++++.+.+..
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~ 79 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 79 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcc
Confidence 6899999 799999999999999999999987543222111100000000 02344555556666666665421
Q ss_pred -----CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q 016208 123 -----NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171 (393)
Q Consensus 123 -----~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V 171 (393)
..-++||++.... ....+.+.+.+++.++ +||
T Consensus 80 ~~~~~~~g~iiid~sT~~----------------p~~~~~~~~~~~~~g~-~~v 116 (161)
T d1vpda2 80 IIEGAKPGTVLIDMSSIA----------------PLASREISDALKAKGV-EML 116 (161)
T ss_dssp HHHHCCTTCEEEECSCCC----------------HHHHHHHHHHHHTTTC-EEE
T ss_pred hhhccCCCCEEEECCCCC----------------HHHHHHHHHHHHHcCC-cee
Confidence 1235666665432 1234566777777666 455
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.23 E-value=0.00053 Score=53.05 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=69.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhc-CCCCccEEE-EccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFI-YADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d 126 (393)
+||.|+|+ |.+|.+++..|...+. ++..++............+.... .......+. ..|.. .+ .+.|
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-------~~--~~ad 71 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DT--ANSD 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-------GG--TTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-------Hh--cCCC
Confidence 68999995 9999999999988774 88888764433222222221110 001122332 23432 23 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+||-+||.... ........+..|+.-.+.+++...+.+.+-++.+-|
T Consensus 72 vvvitag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 72 VIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEEeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 99999996532 233445667899999999999999887555555544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00061 Score=55.13 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..++|+|+| +|..|++++..|.+.|. +++++.|.....+.......++.. .........++.+.+.+.+.+ ..+|
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~d 92 (182)
T d1vi2a1 17 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-NTDCVVTVTDLADQQAFAEAL--ASAD 92 (182)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH-HSSCEEEEEETTCHHHHHHHH--HTCS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh-hcCcceEeeecccccchhhhh--cccc
Confidence 448999999 58999999999999986 788888865544433333322211 123446678899999998888 7899
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+....
T Consensus 93 iiIN~Tp~G 101 (182)
T d1vi2a1 93 ILTNGTKVG 101 (182)
T ss_dssp EEEECSSTT
T ss_pred eeccccCCc
Confidence 999998653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.19 E-value=0.00021 Score=57.60 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=48.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~ 127 (393)
..+|||+||+|.+|...++.+...|.+|+++.+++.+.. .++++ +--..+ |..+. ++........++|+
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~----~~~~l----Ga~~vi--~~~~~~~~~~~~~~~~gvD~ 101 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD----YLRVL----GAKEVL--AREDVMAERIRPLDKQRWAA 101 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH----HHHHT----TCSEEE--ECC---------CCSCCEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH----HHHhc----ccceee--ecchhHHHHHHHhhccCcCE
Confidence 368999999999999999999999999999887554332 22222 111222 22211 22233344468999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||++.|-
T Consensus 102 vid~vgg 108 (176)
T d1xa0a2 102 AVDPVGG 108 (176)
T ss_dssp EEECSTT
T ss_pred EEEcCCc
Confidence 9999874
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.17 E-value=0.00059 Score=51.81 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=71.0
Q ss_pred CCcEEEEEcCC---ChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 48 GVTHVLVTGGA---GYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 48 ~~~~IlItGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
..++|.|+||| |..|..+.+.|.+.| ++|+.+.... ..- .+...+ -++.+ +- .
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~-~~i-------------~G~~~y-~sl~d------lp--~ 63 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE-EEV-------------QGVKAY-KSVKD------IP--D 63 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC-SEE-------------TTEECB-SSTTS------CS--S
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc-ccc-------------CCeEee-cchhh------cC--C
Confidence 44899999999 999999999998766 6899874321 111 111111 12222 22 5
Q ss_pred CCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeecCCCCCCCCCCCCCCCCChHHHHH
Q 016208 124 AFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAK 203 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 203 (393)
.+|.++-+.. ...+..+++.|.+.|++.++.+|+. +.|.. ...
T Consensus 64 ~vDlvvi~vp------------------~~~~~~~~~~~~~~g~~~~vi~s~G----------f~e~~---------~~~ 106 (129)
T d2csua1 64 EIDLAIIVVP------------------KRFVKDTLIQCGEKGVKGVVIITAG----------FGETG---------EEG 106 (129)
T ss_dssp CCSEEEECSC------------------HHHHHHHHHHHHHHTCCEEEECCCS----------STTSC---------HHH
T ss_pred CCceEEEecC------------------hHHhHHHHHHHHHcCCCEEEEeccc----------ccccc---------hhh
Confidence 7898886543 2235578899999999888888872 22211 112
Q ss_pred HHHHHHHHHHHhhCCCcE
Q 016208 204 KMSEDIIIDFSKTTNMAV 221 (393)
Q Consensus 204 ~~~E~~~~~~~~~~g~~~ 221 (393)
...|+.+.+.+++.|+++
T Consensus 107 ~~~~~~l~~~a~~~girv 124 (129)
T d2csua1 107 KREEKELVEIAHKYGMRI 124 (129)
T ss_dssp HHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 344555666677778763
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.15 E-value=0.00021 Score=56.61 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.+++|||+|+ |-+|+.+++.|..+|. +|+++.|...... +...++ +... ...+++.+.+ ..+|
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~---~l~~~~-----~~~~-----~~~~~~~~~l--~~~D 86 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV---ELARDL-----GGEA-----VRFDELVDHL--ARSD 86 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH---HHHHHH-----TCEE-----CCGGGHHHHH--HTCS
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHH---HHHHhh-----hccc-----ccchhHHHHh--ccCC
Confidence 4489999996 9999999999999997 6888776433222 222221 2222 2345667777 6899
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+||.+.+..
T Consensus 87 ivi~atss~ 95 (159)
T d1gpja2 87 VVVSATAAP 95 (159)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999998754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00073 Score=52.91 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=57.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
-+|+|+|. |-+|..+++.|.++|++|+++...... ..+.+.... ..++.++.||..+++.+.++-- ..+|.||
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~---~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i-~~a~~vi 76 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPED---DIKQLEQRL--GDNADVIPGDSNDSSVLKKAGI-DRCRAIL 76 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHH---HHHHHHHHH--CTTCEEEESCTTSHHHHHHHTT-TTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchh---HHHHHHHhh--cCCcEEEEccCcchHHHHHhcc-ccCCEEE
Confidence 47999995 999999999999999999998753321 112222221 2589999999999999887753 5789998
Q ss_pred Ecc
Q 016208 130 HFA 132 (393)
Q Consensus 130 ~~A 132 (393)
-+.
T Consensus 77 ~~~ 79 (153)
T d1id1a_ 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Ecc
Confidence 664
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.10 E-value=0.00038 Score=56.23 Aligned_cols=33 Identities=24% Similarity=0.029 Sum_probs=30.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|.|+|+ |.+|..++..|.+.||+|.+++|..
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999995 9999999999999999999998843
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00053 Score=46.76 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=31.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
..+|||+||+|-+|...++.+...|.+|+++++++
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 36899999999999999999999999999988744
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.00027 Score=57.23 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=51.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+.+|||+||+|.+|...++.+...|.+|+++++... ..+.+++. +...+ .|..+. +.+.+.....++
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~----~~~~l~~~-----Ga~~v-i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KREMLSRL-----GVEYV-GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHTT-----CCSEE-EETTCSTHHHHHHHHTTTCCE
T ss_pred CCEEEEECCCCCcccccchhhccccccceeeecccc----cccccccc-----ccccc-ccCCccCHHHHHHHHhCCCCE
Confidence 469999999999999999999999999999876332 22333332 22222 233333 444444444689
Q ss_pred cEEEEccc
Q 016208 126 DAVMHFAA 133 (393)
Q Consensus 126 d~Vi~~A~ 133 (393)
|+||++.|
T Consensus 96 d~v~d~~g 103 (183)
T d1pqwa_ 96 DVVLNSLA 103 (183)
T ss_dssp EEEEECCC
T ss_pred EEEEeccc
Confidence 99999987
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0042 Score=43.90 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=58.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.+.++|+|.|. |-.|..+++.|.+.|++|++.+....... ...+ ...+.+..+... . ..+ .++|
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~--~~~~------~~~~~~~~~~~~-~----~~~--~~~d 66 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPG--LDKL------PEAVERHTGSLN-D----EWL--MAAD 66 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTT--GGGS------CTTSCEEESBCC-H----HHH--HHCS
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchh--HHHH------hhccceeecccc-h----hhh--ccCC
Confidence 35589999995 88999999999999999999986443222 1111 134555555532 2 223 4679
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCc
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 168 (393)
.||-.-|+.. .+ .+++.|++.|++
T Consensus 67 ~vi~SPGi~~-----~~-------------~~~~~a~~~gi~ 90 (93)
T d2jfga1 67 LIVASPGIAL-----AH-------------PSLSAAADAGIE 90 (93)
T ss_dssp EEEECTTSCT-----TS-------------HHHHHHHHTTCE
T ss_pred EEEECCCCCC-----CC-------------HHHHHHHHcCCC
Confidence 9998777532 11 467778787873
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00048 Score=55.52 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=52.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH---HHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA---KAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~ 125 (393)
+.+|+|+||+|.+|..+++.+...|.+|++++++..+ .+.+.++ +--+++ |..+. +.+.++-...++
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k----~~~~~~l----Ga~~vi--~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK----AQSALKA----GAWQVI--NYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH----HHHHHHH----TCSEEE--ETTTSCHHHHHHHHTTTCCE
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeecccchHH----HHHHHhc----CCeEEE--ECCCCCHHHHHHHHhCCCCe
Confidence 3699999999999999999999999999998774432 2333333 111222 44433 344454444679
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+|+++.+.
T Consensus 99 d~v~d~~g~ 107 (179)
T d1qora2 99 RVVYDSVGR 107 (179)
T ss_dssp EEEEECSCG
T ss_pred EEEEeCccH
Confidence 999999874
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.91 E-value=0.0015 Score=53.69 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=29.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|||.|.| .|++|..++..|++.|++|++++..
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 7899998 7999999999999999999999763
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.91 E-value=0.00047 Score=55.91 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEe
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVD 80 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~ 80 (393)
.++.||.|.||||++|+.|++.|.++- .++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 445899999999999999999999885 4666654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.86 E-value=0.0011 Score=52.91 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=29.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~ 82 (393)
|++|+|+| .|.+|..|++.|.+.|+ +|++++++
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 78899998 69999999999999986 78887763
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.83 E-value=0.003 Score=50.56 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=30.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.+|.|+| .|.+|..+++.|++.||+|++++|...
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 6899999 799999999999999999999988543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.81 E-value=0.00087 Score=52.41 Aligned_cols=33 Identities=21% Similarity=0.090 Sum_probs=29.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|||.|+| .|.+|+.+++.|++.|++|++.++..
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 6899998 79999999999999999999876543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.76 E-value=0.0034 Score=49.73 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=50.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEE-EccCCCHHHHHHHHhh---CC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADLGDAKAVNKIFAE---NA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~---~~ 124 (393)
+.+|+|+| +|-+|...++.+...|.+|+++++... ..+..+++ .....+. .-.-.+...+.+.+.+ .+
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~----r~~~a~~~---ga~~~~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR----RLEVAKNC---GADVTLVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT---TCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCEEEEEc-ccccchhhHhhHhhhcccccccchHHH----HHHHHHHc---CCcEEEeccccccccchhhhhhhcccccC
Confidence 35899998 799999999999999999999876432 22223332 1122221 1222344444444432 57
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||.++|.
T Consensus 99 ~D~vid~~g~ 108 (170)
T d1e3ja2 99 PNVTIDCSGN 108 (170)
T ss_dssp CSEEEECSCC
T ss_pred CceeeecCCC
Confidence 9999999874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.73 E-value=0.0013 Score=52.99 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC-CCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
|+|.|.| +|..|.+|+..|.+.|++|++..|... .+..+.+..-... .-+......++.-..++.+++ .++|+|
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~--~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~ad~I 75 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFD--TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL--ENAEVV 75 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGG--HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH--TTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEeccc--HHHHHHHhhhhhhhhhcchhccccccccccHHHHH--hccchh
Confidence 7999999 699999999999999999999876321 1122222111000 001111112233345567778 789999
Q ss_pred EEcc
Q 016208 129 MHFA 132 (393)
Q Consensus 129 i~~A 132 (393)
|.+.
T Consensus 76 i~av 79 (180)
T d1txga2 76 LLGV 79 (180)
T ss_dssp EECS
T ss_pred hccc
Confidence 8765
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0026 Score=50.06 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=57.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC-CCeEEEE-eCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD-SYRVTIV-DNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.+||+|.|++|-+|+.|++.+.+. +.++.+. +|...... ...+.++......-..+.-|+ ...+ ..+|
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~--g~d~~~~~~~~~~~~~~~~~~------~~~~--~~~D 73 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL--GSDAGELAGAGKTGVTVQSSL------DAVK--DDFD 73 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC--SCCTTCSSSSSCCSCCEESCS------TTTT--TSCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc--cchhhhhhccccCCceeeccH------HHHh--cccc
Confidence 379999999999999999999876 5666553 33222111 111111111111111223333 2334 6899
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+||...-+ .++...++.|.+.++ .+|.=+|
T Consensus 74 ViIDFs~p------------------~~~~~~~~~a~~~~~-~~ViGTT 103 (162)
T d1diha1 74 VFIDFTRP------------------EGTLNHLAFCRQHGK-GMVIGTT 103 (162)
T ss_dssp EEEECSCH------------------HHHHHHHHHHHHTTC-EEEECCC
T ss_pred eEEEeccH------------------HHHHHHHHHHHhccc-eeEEecC
Confidence 99987532 245678889999987 4555444
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.55 E-value=0.014 Score=42.68 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=62.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
.++++|+|+| .|-+|..-++.|++.|.+|++++..... ...... . ..++.+...+..+.+ + .+++
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~--~~~~~~----~-~~~i~~~~~~~~~~d-----l--~~~~ 74 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIP--QFTVWA----N-EGMLTLVEGPFDETL-----L--DSCW 74 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCH--HHHHHH----T-TTSCEEEESSCCGGG-----G--TTCS
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCCh--HHHHHH----h-cCCceeeccCCCHHH-----h--CCCc
Confidence 4568999999 6999999999999999999998653221 111111 1 256777776664322 3 5778
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
.|+-+.+- . .-...+.+.|++.++ +|.+..
T Consensus 75 lv~~at~d---------~--------~~n~~i~~~a~~~~i--lVNv~D 104 (113)
T d1pjqa1 75 LAIAATDD---------D--------TVNQRVSDAAESRRI--FCNVVD 104 (113)
T ss_dssp EEEECCSC---------H--------HHHHHHHHHHHHTTC--EEEETT
T ss_pred EEeecCCC---------H--------HHHHHHHHHHHHcCC--EEEeCC
Confidence 88755431 1 113367788888865 666543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.002 Score=51.29 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++|+|.| +|..+++++..|.+.|.+|+++.|.........+.+... ..+..+..+ +. ....+|+
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~----~~~~~~~~~--~~-------~~~~~dl 82 (170)
T d1nyta1 17 PGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT----GSIQALSMD--EL-------EGHEFDL 82 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG----SSEEECCSG--GG-------TTCCCSE
T ss_pred CCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc----ccccccccc--cc-------cccccce
Confidence 448999999 588999999999999999999877543333333322221 233333222 11 1257999
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
|||+....
T Consensus 83 iIN~Tp~G 90 (170)
T d1nyta1 83 IINATSSG 90 (170)
T ss_dssp EEECCSCG
T ss_pred eecccccC
Confidence 99998654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.52 E-value=0.014 Score=41.33 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+++|.+.|-.|--=++|++.|.++|++|.+-++... ...+.+.+ .++.+..++-.+ .+ .++|
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~---~~~~~L~~-----~Gi~v~~g~~~~------~i--~~~d 69 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG---VVTQRLAQ-----AGAKIYIGHAEE------HI--EGAS 69 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS---HHHHHHHH-----TTCEEEESCCGG------GG--TTCS
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC---hhhhHHHH-----CCCeEEECCccc------cC--CCCC
Confidence 45589999996554447899999999999999887432 22233332 367776665422 23 5789
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
.||...++.
T Consensus 70 ~vV~S~AI~ 78 (96)
T d1p3da1 70 VVVVSSAIK 78 (96)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCcC
Confidence 999888864
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.50 E-value=0.00039 Score=56.69 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.+.|+||.|+| +|..|.+++..|.+.|++|++.+|.
T Consensus 4 ~~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 4 LLYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp CCCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred cceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEec
Confidence 46788999999 6999999999999999999998774
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.43 E-value=0.0032 Score=50.09 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=50.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
...++|+|.| +|..+++++..|.+.+.+|+++.|.........+.+.. ...+.....|-.. + ..+|
T Consensus 16 ~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~----~~~~~~~~~~~~~-------~--~~~d 81 (171)
T d1p77a1 16 RPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP----YGNIQAVSMDSIP-------L--QTYD 81 (171)
T ss_dssp CTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----GSCEEEEEGGGCC-------C--SCCS
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhh----ccccchhhhcccc-------c--cccc
Confidence 3458999999 58889999999999888999998865433333333322 1344445444221 2 6899
Q ss_pred EEEEccccc
Q 016208 127 AVMHFAAVA 135 (393)
Q Consensus 127 ~Vi~~A~~~ 135 (393)
+|||+....
T Consensus 82 iiIN~tp~g 90 (171)
T d1p77a1 82 LVINATSAG 90 (171)
T ss_dssp EEEECCCC-
T ss_pred eeeeccccc
Confidence 999998654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.0019 Score=51.32 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=47.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCcc-EEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQL-QFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
+.+|+|+|+ |.+|...++.+...|.+|++++++..+.+ ..+++ +. +++.. ..+.+...... .++|+
T Consensus 28 g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~----~a~~l-----Ga~~~i~~-~~~~~~~~~~~--~~~d~ 94 (168)
T d1piwa2 28 GKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE----DAMKM-----GADHYIAT-LEEGDWGEKYF--DTFDL 94 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH----HHHHH-----TCSEEEEG-GGTSCHHHHSC--SCEEE
T ss_pred CCEEEEECC-CCcchhHHHHhhhccccccccccchhHHH----Hhhcc-----CCcEEeec-cchHHHHHhhh--cccce
Confidence 468999996 99999999999899999999988544322 22332 22 22221 11222223333 68999
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
|+.+.+..
T Consensus 95 vi~~~~~~ 102 (168)
T d1piwa2 95 IVVCASSL 102 (168)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99997753
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0022 Score=43.52 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=30.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
||+|.|.| +|++|+.++..-...|++|.+++..
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 68999999 6999999999999999999998754
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.40 E-value=0.0011 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY 74 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~ 74 (393)
||.|+||||++|..|++.|.++.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999988865
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.40 E-value=0.013 Score=40.81 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=48.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
|||.++|-.|-==+.|++.|.++|+.|.+-++.. ....+.|+. .++.+..+.- ++ .+ .++|.||
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~---~~~t~~L~~-----~Gi~i~~gh~--~~----~i--~~~d~vV 65 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE---TERTAYLRK-----LGIPIFVPHS--AD----NW--YDPDLVI 65 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC---CHHHHHHHH-----TTCCEESSCC--TT----SC--CCCSEEE
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC---ChhHHHHHH-----CCCeEEeeec--cc----cc--CCCCEEE
Confidence 6899999766555689999999999999987643 223333444 3566655522 11 13 5789999
Q ss_pred Eccccc
Q 016208 130 HFAAVA 135 (393)
Q Consensus 130 ~~A~~~ 135 (393)
...++.
T Consensus 66 ~SsAI~ 71 (89)
T d1j6ua1 66 KTPAVR 71 (89)
T ss_dssp ECTTCC
T ss_pred EecCcC
Confidence 998874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.38 E-value=0.00081 Score=52.63 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=29.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|||.+.| +|.+|++|++.|++.|++|++.+|.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~ 32 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSS 32 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcCh
Confidence 6899998 7999999999999999999998764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.0048 Score=49.53 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH----HHHHHhhC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA----VNKIFAEN 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~ 123 (393)
+.+|+|+|+ |-+|...++.+...|. +|++++++.. ..+..+++ +--.++.-.-.+..+ +.+.....
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~----~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN----RLKLAEEI----GADLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH----HHHHHHHT----TCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCEEEEECC-Cccchhheecccccccccccccccccc----cccccccc----cceEEEeccccchHHHHHHHHHhhCCC
Confidence 479999996 9999999999999997 7899876332 22333333 111233222223333 33333335
Q ss_pred CCcEEEEcccc
Q 016208 124 AFDAVMHFAAV 134 (393)
Q Consensus 124 ~~d~Vi~~A~~ 134 (393)
++|+||.++|.
T Consensus 100 g~Dvvid~vG~ 110 (182)
T d1vj0a2 100 GADFILEATGD 110 (182)
T ss_dssp CEEEEEECSSC
T ss_pred CceEEeecCCc
Confidence 79999999875
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.31 E-value=0.013 Score=44.29 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=49.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 51 HVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
||.|.|++|-+|+.+++.+.+. ++++.+..- +. | +.. .+...++|+||
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d--~~-----------------------~--~~~----~~~~~~~DvvI 49 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELD--AG-----------------------D--PLS----LLTDGNTEVVI 49 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEEC--TT-----------------------C--CTH----HHHTTTCSEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe--cC-----------------------C--chh----hhccccCCEEE
Confidence 7999999999999999998765 677766321 10 0 001 11225799999
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
....+. ++...++.|.+.+++ +|.=+
T Consensus 50 DFS~p~------------------~~~~~~~~~~~~~~~-~ViGT 75 (135)
T d1yl7a1 50 DFTHPD------------------VVMGNLEFLIDNGIH-AVVGT 75 (135)
T ss_dssp ECCCTT------------------THHHHHHHHHHTTCE-EEECC
T ss_pred EcccHH------------------HHHHHHHHHHhcCCC-EEEec
Confidence 887432 255788899999984 55433
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.27 E-value=0.0062 Score=49.10 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=46.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEE-EeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHH-HHHHHhhCCCcE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKA-VNKIFAENAFDA 127 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~~~d~ 127 (393)
.+|||+||+|-+|...++.+...|.++++ ++... +...+...++ +--.++...-.+..+ +.++. ..++|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~---e~~~~l~~~~----gad~vi~~~~~~~~~~~~~~~-~~GvDv 103 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ---EKCLFLTSEL----GFDAAVNYKTGNVAEQLREAC-PGGVDV 103 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH---HHHHHHHHHS----CCSEEEETTSSCHHHHHHHHC-TTCEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchH---HHHhhhhhcc----cceEEeeccchhHHHHHHHHh-ccCceE
Confidence 58999999999999999999999976544 43321 2222222222 222333333333443 44443 468999
Q ss_pred EEEccc
Q 016208 128 VMHFAA 133 (393)
Q Consensus 128 Vi~~A~ 133 (393)
||++.|
T Consensus 104 v~D~vG 109 (187)
T d1vj1a2 104 YFDNVG 109 (187)
T ss_dssp EEESSC
T ss_pred EEecCC
Confidence 999987
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.26 E-value=0.0026 Score=51.48 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
..++|.|+|+ |.+|+.++..++..|++|+++++..
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3578999995 9999999999999999999998754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0046 Score=48.93 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=50.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+.+|+|.|+ |-+|...++.+...|.+++++++...+ .+..+++ +.+. ..|..+.+...... .++|++
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~----~~~a~~l-----Gad~-~i~~~~~~~~~~~~--~~~D~v 97 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK----REAAKAL-----GADE-VVNSRNADEMAAHL--KSFDFI 97 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHH-----TCSE-EEETTCHHHHHTTT--TCEEEE
T ss_pred CCEEEEecc-chHHHHHHHHhhcccccchhhccchhH----HHHHhcc-----CCcE-EEECchhhHHHHhc--CCCcee
Confidence 469999985 899999999999999999988764332 2223333 2221 13555666555444 689999
Q ss_pred EEcccc
Q 016208 129 MHFAAV 134 (393)
Q Consensus 129 i~~A~~ 134 (393)
|.+.+.
T Consensus 98 id~~g~ 103 (168)
T d1uufa2 98 LNTVAA 103 (168)
T ss_dssp EECCSS
T ss_pred eeeeec
Confidence 999875
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.0038 Score=49.44 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=32.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG 85 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 85 (393)
.+|||+||+|-+|...++.....|.+|+++.++..+
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k 60 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA 60 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence 479999999999999999999999999999885443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0081 Score=44.72 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=44.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
++++|+| .|+||..++..|.+.|.+|+++.+.++-... .|-.-.+.+.+.+++.++++..
T Consensus 24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-------------------~d~ei~~~l~~~l~~~GV~i~~ 83 (122)
T d1v59a2 24 KRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-------------------MDGEVAKATQKFLKKQGLDFKL 83 (122)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-------------------SCHHHHHHHHHHHHHTTCEEEC
T ss_pred CeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccccchh-------------------hhhhhHHHHHHHHHhccceEEe
Confidence 7999999 5999999999999999999999775432110 1211124556667777777766
Q ss_pred Ec
Q 016208 130 HF 131 (393)
Q Consensus 130 ~~ 131 (393)
+.
T Consensus 84 ~~ 85 (122)
T d1v59a2 84 ST 85 (122)
T ss_dssp SE
T ss_pred CC
Confidence 55
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.14 E-value=0.004 Score=49.31 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=50.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH-HHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA-KAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d 126 (393)
..+|+|+|++|-+|...+..+...|. +|++++++. ...+..+++ +--.++..+-.+. +.+.+.....++|
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~----~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE----EAVEAAKRA----GADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH----HHHHHHHHH----TCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCEEEEEeccccceeeeeecccccccccccccccch----hhHHHHHHc----CCceeeccCCcCHHHHHHHHhhcccch
Confidence 36899999999999999999998885 888876532 223333333 1113333333333 3344444335799
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||.+++.
T Consensus 100 ~vid~~g~ 107 (170)
T d1jvba2 100 AVIDLNNS 107 (170)
T ss_dssp EEEESCCC
T ss_pred hhhccccc
Confidence 99999874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.012 Score=46.49 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=51.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh---CC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE---NA 124 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~ 124 (393)
+.+|+|+|+ |-+|...+..+...|. +|+++++... ..+..+++ +--.++..+-.+..+..+.+.. .+
T Consensus 27 gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~----rl~~a~~~----Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 27 GHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT----RLSKAKEI----GADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHT----TCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH----HHHHHHHh----CCcccccccccccccccccccccCCCC
Confidence 358999986 9999999999999998 7888876432 22233332 1223444454566555544432 57
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||.+.|.
T Consensus 98 ~Dvvid~~G~ 107 (171)
T d1pl8a2 98 PEVTIECTGA 107 (171)
T ss_dssp CSEEEECSCC
T ss_pred ceEEEeccCC
Confidence 9999999874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.12 E-value=0.008 Score=47.79 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHH-HHHHHHhhCCCc
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK-AVNKIFAENAFD 126 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~d 126 (393)
.+.+|+|.|+ |.+|...+..+...|.+++++....+ ...+..+++ +-.+++.-+-.+.. .+.++ ...++|
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~---~k~~~a~~~----Ga~~~i~~~~~~~~~~i~~~-t~gg~D 98 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE---SRLELAKQL----GATHVINSKTQDPVAAIKEI-TDGGVN 98 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH---HHHHHHHHH----TCSEEEETTTSCHHHHHHHH-TTSCEE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH---HHHHHHHHc----CCeEEEeCCCcCHHHHHHHH-cCCCCc
Confidence 3468999996 99999999999999986655432222 223333333 22234433323332 23333 235799
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||.+.|.
T Consensus 99 ~vid~~G~ 106 (174)
T d1f8fa2 99 FALESTGS 106 (174)
T ss_dssp EEEECSCC
T ss_pred EEEEcCCc
Confidence 99999874
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.11 E-value=0.0028 Score=51.38 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=51.5
Q ss_pred cEEEE-EcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc---cCCCH-HHHHHHHh--h
Q 016208 50 THVLV-TGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA---DLGDA-KAVNKIFA--E 122 (393)
Q Consensus 50 ~~IlI-tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---Dl~~~-~~~~~~~~--~ 122 (393)
.+++| +||+|.+|...++.....|.+|+++.|.....++..+.++++. --..+.- |..+. +.+.+... .
T Consensus 30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lG----ad~vi~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG----ATQVITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHT----CSEEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcc----ccEEEeccccchhHHHHHHHHHHhhcc
Confidence 45666 5999999999999999999999999886665555555555541 1122221 22221 22333321 2
Q ss_pred CCCcEEEEccc
Q 016208 123 NAFDAVMHFAA 133 (393)
Q Consensus 123 ~~~d~Vi~~A~ 133 (393)
.++|+||++.|
T Consensus 106 ~~vdvv~D~vg 116 (189)
T d1gu7a2 106 GEAKLALNCVG 116 (189)
T ss_dssp CCEEEEEESSC
T ss_pred CCceEEEECCC
Confidence 46999999876
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.013 Score=43.51 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=57.7
Q ss_pred CCCCCCcEEEEEcCC----------ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCH
Q 016208 44 RHEPGVTHVLVTGGA----------GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDA 113 (393)
Q Consensus 44 ~~~~~~~~IlItGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 113 (393)
+....-++|||+|+. -+.+.+.+++|.+.|++++.+..++..-... ..-..-+...--..
T Consensus 2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd----------~d~aD~lYfePlt~ 71 (127)
T d1a9xa3 2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTD----------PEMADATYIEPIHW 71 (127)
T ss_dssp CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGC----------GGGSSEEECSCCCH
T ss_pred CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcC----------hhhcceeeeecCCH
Confidence 334455899999973 3689999999999999999986544332211 12234455566678
Q ss_pred HHHHHHHhhCCCcEEEEccc
Q 016208 114 KAVNKIFAENAFDAVMHFAA 133 (393)
Q Consensus 114 ~~~~~~~~~~~~d~Vi~~A~ 133 (393)
+.+.+.+++++||.|+-..|
T Consensus 72 e~v~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 72 EVVRKIIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHHHHHHCCSEEECSSS
T ss_pred HHHHHHHHHhCcCCeEEEee
Confidence 99999999999999986655
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.011 Score=45.68 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=50.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCCCCCchhhhhhhhhcCC--------------------CCccEEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQ--------------------PGQLQFI 106 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 106 (393)
|++|.|+|+||-||.....-+.+. .++|.+++- ......+.+...++.+. ..++.++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa-~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~ 79 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA-GKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVL 79 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe-cCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccc
Confidence 789999999999999999988776 478888864 22223333333333111 0112222
Q ss_pred EccCCCHHHHHHHHhhCCCcEEEEccc
Q 016208 107 YADLGDAKAVNKIFAENAFDAVMHFAA 133 (393)
Q Consensus 107 ~~Dl~~~~~~~~~~~~~~~d~Vi~~A~ 133 (393)
. ..+.+.++....++|+|++...
T Consensus 80 ~----g~~~l~~~~~~~~~D~vi~AI~ 102 (151)
T d1q0qa2 80 S----GQQAACDMAALEDVDQVMAAIV 102 (151)
T ss_dssp E----SHHHHHHHHTCTTCCEEEECCS
T ss_pred c----ChHHHHHHhcCCCCCEEEEecC
Confidence 2 3456666665567899987764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.98 E-value=0.015 Score=42.69 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=30.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
++|+|.| .|++|..++..|.+.|.+|+++.|.++
T Consensus 23 ~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 7999999 599999999999999999999987553
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0037 Score=50.00 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=31.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.+|||+||+|.+|...++.+...|.+|+++++++.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~ 67 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchh
Confidence 48999999999999999999999999999987443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.85 E-value=0.013 Score=46.93 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...+++|.|.| .|-||+.+++.|...|.+|++.+|...... . ...+++.+++ ..+
T Consensus 39 ~l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~---------------~-------~~~~~l~ell--~~s 93 (181)
T d1qp8a1 39 LIQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGP---------------W-------RFTNSLEEAL--REA 93 (181)
T ss_dssp CCTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSS---------------S-------CCBSCSHHHH--TTC
T ss_pred cccCceEEEec-cccccccceeeeeccccccccccccccccc---------------e-------eeeechhhhh--hcc
Confidence 35678999999 799999999999999999999987543211 0 0112356778 789
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+|+.+...
T Consensus 94 Div~~~~pl 102 (181)
T d1qp8a1 94 RAAVCALPL 102 (181)
T ss_dssp SEEEECCCC
T ss_pred chhhccccc
Confidence 999877644
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.84 E-value=0.0054 Score=46.18 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=50.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
++|+|+| -|-+|+.+++.|. |++|.++...... .+.+.. .++.++.||.++++.+.++-- ..++.+|
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~~~i~vi~~d~~~----~~~~~~-----~~~~~i~Gd~~~~~~L~~a~i-~~A~~vi 67 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--GSEVFVLAEDENV----RKKVLR-----SGANFVHGDPTRVSDLEKANV-RGARAVI 67 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--GGGEEEEESCTTH----HHHHHH-----TTCEEEESCTTSHHHHHHTTC-TTCSEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHc--CCCCEEEEcchHH----HHHHHh-----cCccccccccCCHHHHHHhhh-hcCcEEE
Confidence 4689999 5999999999994 6677777653321 222222 588999999999998888643 5788888
Q ss_pred Ecc
Q 016208 130 HFA 132 (393)
Q Consensus 130 ~~A 132 (393)
-+.
T Consensus 68 ~~~ 70 (129)
T d2fy8a1 68 VNL 70 (129)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.80 E-value=0.0049 Score=49.14 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=49.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc-cCCCHHHHHHHHhhCCCc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA-DLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~d 126 (393)
..+|+|.|+ |-+|...++.+...|. +|+++++.. ...+..+++ +-.+++.- |-...+.+.+.....++|
T Consensus 28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~----~r~~~a~~l----Ga~~~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 28 GSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP----ICVEAAKFY----GATDILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH----HHHHHHHHH----TCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred CCEEEEEcC-Ccchhhhhhhhhcccccccccccchh----hhHHHHHhh----CccccccccchhHHHHHHHHhhccCcc
Confidence 358999985 9999999999999996 788876532 222333333 11223322 222234455555446799
Q ss_pred EEEEcccc
Q 016208 127 AVMHFAAV 134 (393)
Q Consensus 127 ~Vi~~A~~ 134 (393)
+||.++|.
T Consensus 99 ~vid~~g~ 106 (174)
T d1jqba2 99 RVIMAGGG 106 (174)
T ss_dssp EEEECSSC
T ss_pred eEEEccCC
Confidence 99999985
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.013 Score=43.09 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
++|+|.| .|++|..++..|.+.|.+|+++.|.++
T Consensus 22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence 6899999 599999999999999999999987543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.73 E-value=0.016 Score=42.72 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.++|+|.| .|++|..++..|...|.+|+++.|..+
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhccccceeeehhcc
Confidence 37999999 599999999999999999999987543
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.67 E-value=0.023 Score=41.84 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
++++|+| +|+||..++..|.+.|.+|+++.+..+
T Consensus 23 ~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 7999999 599999999999999999999987543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.013 Score=47.25 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+...++|.|.| .|.||+.+++.|..-|.+|++.++..
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 41 EARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccceEEEEee-cccchhhhhhhcccccceEeeccccc
Confidence 45668999998 89999999999999999999998743
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.49 E-value=0.01 Score=44.12 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=29.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
++++|+| .|+||..++..|.+.|.+|+++.|.
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 6899999 5999999999999999999999763
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.029 Score=41.66 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=30.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
++++|.| .|++|..++..|.+.|.+|+++.|..+
T Consensus 23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 7999999 599999999999999999999988543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0054 Score=49.74 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
+..++|.|+|| |.+|+.++..++..|++|+++++...
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 34479999995 99999999999999999999987543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.37 E-value=0.0068 Score=48.38 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=30.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|||-|+| .|.+|.++++.|++.||+|++.+|..
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 6899999 89999999999999999999987743
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.35 E-value=0.017 Score=42.44 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=53.3
Q ss_pred cEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
|+|.|+|+| +-.|..+.+.|++.||+|+.+... ... . .+... ..++.++- ..+|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~--~~~-i-----------~G~~~-------y~sl~~lp--~~~D 58 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN--YDE-I-----------EGLKC-------YRSVRELP--KDVD 58 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT--CSE-E-----------TTEEC-------BSSGGGSC--TTCC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc--ccc-c-----------cCccc-------cccchhcc--ccce
Confidence 689999988 779999999999999999987431 111 0 11111 12222332 5688
Q ss_pred EEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 127 AVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 127 ~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
+++-+.. ...+..+++.|.+.|++.+++
T Consensus 59 ~vvi~vp------------------~~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 59 VIVFVVP------------------PKVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp EEEECSC------------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeC------------------HHHHHHHHHHHHhcCCceEEe
Confidence 8875542 223557788888889876544
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.32 E-value=0.016 Score=44.15 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=54.6
Q ss_pred CcEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGA---GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
.++|.|+|+| +-.|..+++.|.+.||+|+.+... ..+- .+..+ ..++.++- ..+
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~--~~~i------------~G~~~-------~~sl~dlp--~~i 75 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK--YEEV------------LGRKC-------YPSVLDIP--DKI 75 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT--CSEE------------TTEEC-------BSSGGGCS--SCC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc--cccc------------CCCcc-------cccccccC--ccc
Confidence 3799999998 789999999999999999987432 1110 11111 11122222 578
Q ss_pred cEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~ 172 (393)
|+|+-+.. -..+..+++.|.+.|++.+++
T Consensus 76 D~v~i~vp------------------~~~~~~~~~e~~~~g~k~v~~ 104 (139)
T d2d59a1 76 EVVDLFVK------------------PKLTMEYVEQAIKKGAKVVWF 104 (139)
T ss_dssp SEEEECSC------------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred eEEEEEeC------------------HHHHHHHHHHHHHhCCCEEEE
Confidence 88776543 224567888888889876555
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.06 Score=39.25 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=54.7
Q ss_pred CcEEEEEcCCC----------hhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHH
Q 016208 49 VTHVLVTGGAG----------YIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNK 118 (393)
Q Consensus 49 ~~~IlItGatG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 118 (393)
.++|||+|+.. +.+.+.++.|.+.|++++.+..++..-.- +..-..-+...--..+.+.+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVst----------d~d~aD~lYfeplt~e~v~~ 73 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVST----------DYDTSDRLYFEPVTLEDVLE 73 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTT----------STTSSSEEECCCCSHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhc----------ChhhcCceEEccCCHHHHHH
Confidence 47999999633 78999999999999999998654433221 11233445555567899999
Q ss_pred HHhhCCCcEEEEccc
Q 016208 119 IFAENAFDAVMHFAA 133 (393)
Q Consensus 119 ~~~~~~~d~Vi~~A~ 133 (393)
.+++++||.|+-..|
T Consensus 74 Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 74 IVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHCCSEEECSSS
T ss_pred HHHHhCCCEEEeehh
Confidence 999999999885554
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.27 E-value=0.016 Score=42.98 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.++|+|.| .|++|..++..|.++|.+|+++.+..+
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence 37999999 599999999999999999999987543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.26 E-value=0.019 Score=45.37 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=49.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..+|+|.|+ |.+|...+..+...|. .|+++++.. ...+..+++ ...+++..+-.+.+.+.+.....++|+
T Consensus 33 g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~----~k~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 33 GAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE----EKLKLAERL----GADHVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH----HHHHHHHHT----TCSEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred CCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchh----HHHHHHhhc----ccceeecCcccHHHHHHHhhCCCCceE
Confidence 368999985 9999999999988885 556655532 223333332 233444443333444555544467999
Q ss_pred EEEcccc
Q 016208 128 VMHFAAV 134 (393)
Q Consensus 128 Vi~~A~~ 134 (393)
||.+++.
T Consensus 104 vid~~g~ 110 (172)
T d1h2ba2 104 AMDFVGS 110 (172)
T ss_dssp EEESSCC
T ss_pred EEEecCc
Confidence 9999984
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.25 E-value=0.027 Score=44.37 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD-SYRVTIVDN 81 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r 81 (393)
..+||.|.| +|.+|+.+++.|.+. +.+++++..
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~ 35 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFS 35 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEe
Confidence 447899999 799999999999876 677777653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.19 E-value=0.022 Score=42.24 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=30.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
++++|+| .|++|..++..|.+.|.+|+++.|..+
T Consensus 26 ~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 7999999 599999999999999999999987543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.17 E-value=0.0077 Score=48.92 Aligned_cols=37 Identities=24% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.+..+++|.|.| .|.||+.+++.|..-|.+|++.++.
T Consensus 39 ~el~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 39 REVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ccccCCeEEEec-ccccchhHHHhHhhhcccccccCcc
Confidence 456679999999 8999999999999999999998764
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.15 E-value=0.019 Score=42.65 Aligned_cols=34 Identities=44% Similarity=0.677 Sum_probs=30.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.++|+|.| .|++|..++..|.+.|.+|+++.+.+
T Consensus 30 ~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence 47999999 59999999999999999999998754
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.09 E-value=0.013 Score=47.67 Aligned_cols=39 Identities=28% Similarity=0.214 Sum_probs=33.9
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.+...++|.|.| .|-||+.+++.|..-|.+|++.++...
T Consensus 41 ~~l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 41 KELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred ccccceeeeeee-cccccccccccccccceeeeccCCccc
Confidence 455668999999 799999999999999999999987543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.95 E-value=0.067 Score=41.99 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=46.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc-c-CCCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA-D-LGDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-D-l~~~~~~~~~~~~~~~ 125 (393)
+.+|+|.|+ |.+|...++.+...|. .|+++++ ... ..+..+++ +--+++.. + -.+.....+.....++
T Consensus 29 G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~-~~~---k~~~ak~l----Ga~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 29 GSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDI-NKD---KFARAKEF----GATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS-CGG---GHHHHHHH----TCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcc-cHH---HHHHHHHh----CCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 468999997 6789999999999996 5555544 222 22233333 12222222 1 1234444444444689
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||.+.|.
T Consensus 100 D~vid~~G~ 108 (176)
T d2fzwa2 100 DYSFECIGN 108 (176)
T ss_dssp SEEEECSCC
T ss_pred cEeeecCCC
Confidence 999999874
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.89 E-value=0.018 Score=45.37 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=29.3
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 83 (393)
.++|+|+| +|..|++++..|.+.|. +|.++.|+.
T Consensus 17 ~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 37899999 59999999999999996 788887743
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.88 E-value=0.046 Score=41.90 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKD--SYRVTIVDN 81 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r 81 (393)
+|++|.|.|+||-||....+-+.+. .++|.+++-
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 3589999999999999999888765 578888864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.84 E-value=0.059 Score=42.57 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=50.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEE-ccCCC-HHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY-ADLGD-AKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~~-~~~~~~~~~~~~~ 125 (393)
+.+|+|+|+ |-+|...+..+...| .+|+++++...+ .+..+++ +-..++. -|-.+ .+.+.+.....++
T Consensus 30 g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~k----l~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 30 GSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDK----FEKAMAV----GATECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHH----TCSEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHH----HHHHHhc----CCcEEECccccchHHHHHHHHhccccc
Confidence 468999985 999999999999999 489998764332 2222232 1122222 23322 4555565655789
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|++|.+.+.
T Consensus 101 d~vi~~~g~ 109 (176)
T d1d1ta2 101 GYTFEVIGH 109 (176)
T ss_dssp CEEEECSCC
T ss_pred eEEEEeCCc
Confidence 999999875
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.13 Score=42.89 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=63.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCc-------------------hhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNM-------------------GAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|.| .|.+|++++..|...|. ++++++...-... .+.+.+.+. .+.+.+...+
T Consensus 31 ~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~---np~~~i~~~~ 106 (247)
T d1jw9b_ 31 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI---NPHIAITPVN 106 (247)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH---CTTSEEEEEC
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh---hcccchhhhh
Confidence 6999999 69999999999999996 6777653211111 111112222 2344444333
Q ss_pred C-CCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 110 L-GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 110 l-~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
. .+.+.....+ ...|+||.+... ...-..+-+.|.+.+++ +|+.+....+|
T Consensus 107 ~~~~~~~~~~~~--~~~divid~~d~-----------------~~~~~~in~~~~~~~ip-~i~g~~~~~~g 158 (247)
T d1jw9b_ 107 ALLDDAELAALI--AEHDLVLDCTDN-----------------VAVRNQLNAGCFAAKVP-LVSGAAIRMEG 158 (247)
T ss_dssp SCCCHHHHHHHH--HTSSEEEECCSS-----------------HHHHHHHHHHHHHHTCC-EEEEEEEBTEE
T ss_pred hhhhhccccccc--cccceeeeccch-----------------hhhhhhHHHHHHHhCCC-ccccccccccc
Confidence 2 2344445555 578888876531 22334566778888874 77765544444
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.82 E-value=0.07 Score=41.13 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=56.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCC---CCccEEEEccCCCHHHHHHHHhh-----
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ---PGQLQFIYADLGDAKAVNKIFAE----- 122 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~----- 122 (393)
||.++| .|.+|..+++.|++.|+.|+ ..|.........+........ -.....+...+.+.+.+......
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence 689999 79999999999999998764 555433222221111100000 02334444455566665544332
Q ss_pred CCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V 171 (393)
.+-.++|.++... ...++.+.+.+++.++ ++|
T Consensus 80 ~~~~~iid~sT~~----------------p~~~~~~~~~~~~~gi-~~l 111 (156)
T d2cvza2 80 REGTYWVDATSGE----------------PEASRRLAERLREKGV-TYL 111 (156)
T ss_dssp CTTEEEEECSCCC----------------HHHHHHHHHHHHTTTE-EEE
T ss_pred cccccccccccCC----------------HHHHHHHHHHHHHcCC-eEE
Confidence 3455666666432 2235567777777665 444
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.051 Score=44.07 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=48.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEe-CCCCCC-----chhhhhhhhhcCCCCccEEEE-ccCCCHHHHHHHHhh
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGN-----MGAVKVLQELFPQPGQLQFIY-ADLGDAKAVNKIFAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~~ 122 (393)
|||+|+| ++-.|..+++.|++.|++|.++. +.+... ....+...+ .++.++. .++.+.+ +.+.+.+
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~-----~~i~~~~~~~~~~~~-~~~~i~~ 73 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAE-----RGIPVYAPDNVNHPL-WVERIAQ 73 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHH-----HTCCEECCSCCCSHH-HHHHHHH
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHH-----cCCcceecccccchh-hhhhhhh
Confidence 6899997 56789999999999999997654 322110 011111111 2566554 4555554 4555666
Q ss_pred CCCcEEEEccc
Q 016208 123 NAFDAVMHFAA 133 (393)
Q Consensus 123 ~~~d~Vi~~A~ 133 (393)
.++|++|-...
T Consensus 74 ~~~Dlii~~g~ 84 (203)
T d2blna2 74 LSPDVIFSFYY 84 (203)
T ss_dssp TCCSEEEEESC
T ss_pred hcccceeeeec
Confidence 89999987764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.70 E-value=0.058 Score=39.51 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=30.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.++|+|.| +|++|..++..|...|.+|.++.|.+
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccc
Confidence 47999999 69999999999999999999998754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.70 E-value=0.033 Score=43.45 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=29.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
..+|+|.|+ |.+|...+..+...|.+|+++++.
T Consensus 28 g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 28 GQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 368999985 999999999999999999998764
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.70 E-value=0.02 Score=46.14 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=34.4
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
..+..+++|.|.| .|-||+.+++.|..-|.+|++.++...
T Consensus 44 ~~eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEec-cccccccceeeeeccccceeeccCccc
Confidence 3456778999999 799999999999999999999887543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.043 Score=43.08 Aligned_cols=82 Identities=17% Similarity=0.028 Sum_probs=53.5
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC--CCHHHHHHHHhhC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL--GDAKAVNKIFAEN 123 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~ 123 (393)
+..+++|+|.|-|.-+|+.|+..|+++|..|+.+...........+.+ .-......|+ ...+.+.+.. .
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~lk~~~--~ 96 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESL-------KLNKHHVEDLGEYSEDLLKKCS--L 96 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCS-------SCCCCEEEEEEECCHHHHHHHH--H
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccce-------eeeeeccccccccchhHHhhcc--c
Confidence 567799999999999999999999999999987654321110000000 0001111222 3466778877 6
Q ss_pred CCcEEEEcccccC
Q 016208 124 AFDAVMHFAAVAY 136 (393)
Q Consensus 124 ~~d~Vi~~A~~~~ 136 (393)
..|+||..+|...
T Consensus 97 ~aDIvIsavG~p~ 109 (171)
T d1edza1 97 DSDVVITGVPSEN 109 (171)
T ss_dssp HCSEEEECCCCTT
T ss_pred cCCEEEEccCCCc
Confidence 7899998887654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.64 E-value=0.11 Score=40.88 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=49.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC--CCHHHHHHHHhhCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL--GDAKAVNKIFAENAF 125 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~~~ 125 (393)
+.+|+|+| .|.||...+..+...|. +|++++++.. ..+..+++ +-...+...- ...+.+.......++
T Consensus 29 G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~----r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 29 GSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGE----KFPKAKAL----GATDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHT----TCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchH----HHHHHHHh----CCCcccCCccchhhhhhhHhhhhcCCC
Confidence 46899998 59999999999999997 5666655322 22333332 1222332211 133445555555799
Q ss_pred cEEEEcccc
Q 016208 126 DAVMHFAAV 134 (393)
Q Consensus 126 d~Vi~~A~~ 134 (393)
|+||.++|.
T Consensus 100 d~vie~~G~ 108 (174)
T d1e3ia2 100 DYSLDCAGT 108 (174)
T ss_dssp SEEEESSCC
T ss_pred cEEEEeccc
Confidence 999999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.54 E-value=0.029 Score=42.25 Aligned_cols=35 Identities=34% Similarity=0.593 Sum_probs=31.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.++|+|+| +|++|..++..|.+.|.+|+++.+.++
T Consensus 35 ~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence 37999999 699999999999999999999987554
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.50 E-value=0.022 Score=41.64 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=30.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
++++|.| .|++|..++..|.+.|.+|+++.+.+
T Consensus 22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence 7899999 59999999999999999999997744
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.50 E-value=0.013 Score=46.54 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=46.7
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
..++|+|.| +|..+++++..|.+.| +|+++.|.........+.+............-..++.+ .+ ..+|+
T Consensus 17 ~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~dl 86 (177)
T d1nvta1 17 KDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV------DL--DGVDI 86 (177)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC------CC--TTCCE
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhh------cc--chhhh
Confidence 448999999 6889999999997777 89998885444333333332221111011111122221 12 57899
Q ss_pred EEEccccc
Q 016208 128 VMHFAAVA 135 (393)
Q Consensus 128 Vi~~A~~~ 135 (393)
|||+....
T Consensus 87 iIn~tp~g 94 (177)
T d1nvta1 87 IINATPIG 94 (177)
T ss_dssp EEECSCTT
T ss_pred hccCCccc
Confidence 99997654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.47 E-value=0.019 Score=44.40 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=28.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 83 (393)
|||.+.| .|.+|+++++.|++.| ++|++.+|+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 6899999 5999999999999887 8999987743
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.045 Score=42.59 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
...+++|+|.|-+..+|+.|+..|.++|..|+.+..
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 456799999999999999999999999999998743
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.45 E-value=0.095 Score=44.69 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
...++|+|-| -|.+|+++++.|.+.|..|++++-
T Consensus 34 L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 34 FGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4458999999 799999999999999999998864
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.36 E-value=0.028 Score=41.55 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
++|+|.| .|++|..++..|.+.|.+|+++.|..
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEEC-CcHHHHHHHHHhhcccceEEEEeccc
Confidence 6899999 59999999999999999999987743
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.077 Score=41.49 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
+..+++|+|+|-+..+|+.|+..|+++|..|+.+..
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 456799999999999999999999999999998754
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.29 E-value=0.023 Score=45.10 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=28.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r~ 82 (393)
|-||.|-| .|-||+.+++.|.+++ .+|+++...
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~ 34 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKT 34 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECC
Confidence 67999999 8999999999999874 688887643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.21 E-value=0.12 Score=40.01 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=55.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
.-+|+|+| .|-.|..-++.+...|.+|++++.+.. ..+.++.... ..+++. ..+.+.+.+.+ ..+|+|
T Consensus 32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~----~l~~l~~~~~--~~~~~~---~~~~~~l~~~~--~~aDiv 99 (168)
T d1pjca1 32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVE----RLSYLETLFG--SRVELL---YSNSAEIETAV--AEADLL 99 (168)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHG--GGSEEE---ECCHHHHHHHH--HTCSEE
T ss_pred CcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHH----HHHHHHHhhc--ccceee---hhhhhhHHHhh--ccCcEE
Confidence 46999999 599999999999999999999987432 2233333221 233333 45678888888 789999
Q ss_pred EEcccccC
Q 016208 129 MHFAAVAY 136 (393)
Q Consensus 129 i~~A~~~~ 136 (393)
|-++-+..
T Consensus 100 I~aalipG 107 (168)
T d1pjca1 100 IGAVLVPG 107 (168)
T ss_dssp EECCCCTT
T ss_pred EEeeecCC
Confidence 99987653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.08 E-value=0.0096 Score=47.18 Aligned_cols=116 Identities=14% Similarity=0.024 Sum_probs=61.7
Q ss_pred cEEEEEcCCChhHHH--HHHHHHHC----CCeEEEEeCCCCCCchhhhhhhhhc-CCCCccEEEEccCCCHHHHHHHHhh
Q 016208 50 THVLVTGGAGYIGSH--AALRLLKD----SYRVTIVDNLSRGNMGAVKVLQELF-PQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 50 ~~IlItGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
|||.|.|| |.+|.. ++..|+.. +.|+..+++...........+.... ......++... .| ..+++
T Consensus 3 mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~--td---~~eaL-- 74 (171)
T d1obba1 3 VKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT--MN---LDDVI-- 74 (171)
T ss_dssp CEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE--SC---HHHHH--
T ss_pred cEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe--CC---hhhcc--
Confidence 79999995 888875 34445433 4699999875332222222222210 01123333222 12 35567
Q ss_pred CCCcEEEEcccccCccCCccChHHH------------------------HHHHHHHHHHHHHHHHhcCCcEEEEe
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRY------------------------YHNITSNTLVILEAMAAHKVKTLIYS 173 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~------------------------~~~n~~~~~~ll~~~~~~~~~~~V~~ 173 (393)
.++|+||..++.............. ..-|+.-...+++.+++...+-++..
T Consensus 75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~ 149 (171)
T d1obba1 75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQ 149 (171)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEE
Confidence 7999999998765322111000000 12366677778888877764444443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.01 E-value=0.14 Score=40.18 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEE-EccCC-CHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFI-YADLG-DAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~-~~~~~~~~~~~~~ 124 (393)
.+.+|+|.|+ |.+|...+..+...|. +|+++++...+ .+...++ .....+ ..+.. ..+...+.....+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k----~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDK----FAKAKEV----GATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHT----TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHH----HHHHHHh----CCeeEEecCCchhHHHHHHHHHhcCC
Confidence 4468999998 6699999999999984 78887653322 2222222 122222 22332 2345555555578
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||.+.|.
T Consensus 99 ~D~vid~~G~ 108 (176)
T d2jhfa2 99 VDFSFEVIGR 108 (176)
T ss_dssp BSEEEECSCC
T ss_pred CCEEEecCCc
Confidence 9999999875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.88 E-value=0.026 Score=45.54 Aligned_cols=31 Identities=39% Similarity=0.568 Sum_probs=26.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|||.|.| .|++|..++..| ++|++|++++..
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDIL 31 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSC
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECC
Confidence 7899998 899999999755 679999998753
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=93.86 E-value=0.13 Score=41.17 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=33.3
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
.+...++|.|.| .|.||+.+++.|..-|.+|.+.++...
T Consensus 43 ~~l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 43 EKLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred ceecccceEEee-cccchHHHHHHHHhhcccccccccccc
Confidence 345679999999 799999999999999999999876433
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.84 E-value=0.17 Score=38.90 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCChhHHHH-HHHHHHC-CCeEEEEe-CCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHA-ALRLLKD-SYRVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l-~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
+++||.|+| +|.+|+.+ .+.|... ..+++++. |...... ....+. .++.+... ..+++.+..+..+
T Consensus 3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~--~~~a~~-----~~i~~~~~---~~d~l~~~~~~~~ 71 (157)
T d1nvmb1 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDG--LARAQR-----MGVTTTYA---GVEGLIKLPEFAD 71 (157)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHH--HHHHHH-----TTCCEESS---HHHHHHHSGGGGG
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccc--hhhhhh-----cCCccccc---ceeeeeecccccc
Confidence 347999999 99999864 5555444 34777764 3222111 111111 23333322 3455555444467
Q ss_pred CcEEEEcc
Q 016208 125 FDAVMHFA 132 (393)
Q Consensus 125 ~d~Vi~~A 132 (393)
+|+||.+.
T Consensus 72 iDiVf~AT 79 (157)
T d1nvmb1 72 IDFVFDAT 79 (157)
T ss_dssp EEEEEECS
T ss_pred cCEEEEcC
Confidence 99998764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.82 E-value=0.049 Score=45.29 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=30.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+||+|+| .|..|...+..|.++|++|.++.|..
T Consensus 7 ~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLG-SGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6899999 59999999999999999999998743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.81 E-value=0.16 Score=39.85 Aligned_cols=78 Identities=18% Similarity=0.052 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCC--HHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD--AKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~ 124 (393)
.+.+|+|.|+ |-+|...+..+...|. +|+++++... ..+..+++ +-..++...-.| .+.........+
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~----kl~~a~~l----Ga~~~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD----KFPKAIEL----GATECLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHHHT----TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHH----HHHHHHHc----CCcEEEcCCCchhHHHHHHHHhcCCC
Confidence 3468999995 9999999999999996 6888765332 22222332 222233221122 344445554468
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||.+++.
T Consensus 98 ~d~vid~~g~ 107 (174)
T d1p0fa2 98 VDYAVECAGR 107 (174)
T ss_dssp BSEEEECSCC
T ss_pred CcEEEEcCCC
Confidence 9999999875
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.64 E-value=0.34 Score=37.76 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDS-YRVTIVDN 81 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r 81 (393)
|++|.|-| -|-||+.+++.|..++ .+|+++.-
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd 33 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK 33 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence 78999999 8999999999998876 57777754
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.64 E-value=0.044 Score=43.90 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 84 (393)
+...++|.|.| .|-||+.+++.|..-|.+|.+.++...
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 78 (188)
T d2naca1 41 DLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRL 78 (188)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred eccccceeecc-ccccchhhhhhhhccCceEEEEeeccc
Confidence 45668999999 799999999999999999999987543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.47 E-value=0.17 Score=40.70 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
..+++|.|-| -|.+|+++++.|.+.|.+|++.+.
T Consensus 25 L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201)
T d1c1da1 25 LDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADT 58 (201)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc
Confidence 4558999999 899999999999999999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.028 Score=43.63 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 46 ~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
...+|+++|+| .|.||+.+++.|...|.+|+++...+ ....+... .+... ..+.+++ ...
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp---~~al~A~~------dG~~v--------~~~~~a~--~~a 80 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDP---INALQAAM------EGYEV--------TTMDEAC--QEG 80 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH---HHHHHHHH------TTCEE--------CCHHHHT--TTC
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeeccc---chhHHhhc------CceEe--------eehhhhh--hhc
Confidence 35568999999 99999999999999999999986532 11222111 12221 2245566 678
Q ss_pred cEEEEccccc
Q 016208 126 DAVMHFAAVA 135 (393)
Q Consensus 126 d~Vi~~A~~~ 135 (393)
|+||-+.|..
T Consensus 81 divvtaTGn~ 90 (163)
T d1li4a1 81 NIFVTTTGCI 90 (163)
T ss_dssp SEEEECSSCS
T ss_pred cEEEecCCCc
Confidence 8888777743
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.43 E-value=0.046 Score=40.54 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.++++|.| .|+||..++..|.+.|.+|+++.+.+
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 37999999 59999999999999999999997744
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.30 E-value=0.049 Score=47.46 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=30.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+|+|+|+| +|.-|...|..|.+.|++|.++.+..
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 48999999 69999999999999999999997644
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.30 E-value=0.19 Score=41.32 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=46.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+++|+|-| -|.+|+++++.|.+.|..|++.+... ......... .+...+ +++ +++ ..+||
T Consensus 37 l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~---~~~~~~~~~-----~g~~~~-----~~~---~~~-~~~cD 98 (230)
T d1leha1 37 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNK---AAVSAAVAE-----EGADAV-----APN---AIY-GVTCD 98 (230)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH---HHHHHHHHH-----HCCEEC-----CGG---GTT-TCCCS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccH---HHHHHHHHh-----cCCccc-----CCc---ccc-ccccc
Confidence 4558999999 79999999999999999999875421 111111111 122222 222 222 26899
Q ss_pred EEEEcccccC
Q 016208 127 AVMHFAAVAY 136 (393)
Q Consensus 127 ~Vi~~A~~~~ 136 (393)
+++-||....
T Consensus 99 Il~PcA~~~~ 108 (230)
T d1leha1 99 IFAPCALGAV 108 (230)
T ss_dssp EEEECSCSCC
T ss_pred Eecccccccc
Confidence 9999997543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.30 E-value=0.46 Score=36.95 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCC-CeEEEEeC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDS-YRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g-~~V~~~~r 81 (393)
+||.|-| -|-||+.+++.|.++. .+|+++.-
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 6999999 7999999999998764 68887754
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.07 E-value=0.042 Score=43.85 Aligned_cols=39 Identities=28% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 44 ~~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
..+...+++.|.| .|.||+.+++.|..-|.+|++.++..
T Consensus 39 ~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~ 77 (184)
T d1ygya1 39 GTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYV 77 (184)
T ss_dssp BCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred cccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCC
Confidence 3456678999999 79999999999999999999987643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.11 Score=41.09 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
...++|+|+| +|..|-..+..|.++||+|+++.+.+
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccC
Confidence 4558999999 69999999999999999999998754
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=93.04 E-value=0.2 Score=41.54 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
..+++|+|-| -|.+|+++++.|.+.|.+|++++-
T Consensus 29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 3458999999 899999999999999999998764
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.02 E-value=0.48 Score=37.09 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=56.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
+||.|+| +|.+|+..++.|... +.+|+++.- +..+.. +.+...........+ . .+ +.++++..++|+|
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d--~~~~~~-~~~~~~~~~~~~~~~-~---~~---~~~ll~~~~iD~v 70 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVAS--RSLEKA-KAFATANNYPESTKI-H---GS---YESLLEDPEIDAL 70 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEEC--SSHHHH-HHHHHHTTCCTTCEE-E---SS---HHHHHHCTTCCEE
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEe--CCcccc-ccchhccccccceee-c---Cc---HHHhhhcccccee
Confidence 6899999 699999999999876 568887642 222222 222222111112221 1 23 3455555789999
Q ss_pred EEcccccCccCCccChHHHH------------HHHHHHHHHHHHHHHhcCC
Q 016208 129 MHFAAVAYVGESTLEPLRYY------------HNITSNTLVILEAMAAHKV 167 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~------------~~n~~~~~~ll~~~~~~~~ 167 (393)
+-+.... .. ......+. ..+......+++.+++.++
T Consensus 71 ~I~tp~~-~h--~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~ 118 (184)
T d1ydwa1 71 YVPLPTS-LH--VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV 118 (184)
T ss_dssp EECCCGG-GH--HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred eecccch-hh--cchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence 8554221 10 00000011 1456667778888887765
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.082 Score=45.33 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=24.3
Q ss_pred cCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 56 GGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 56 GatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
-.||-.|.+|+++|+.+|++|+.+.+.
T Consensus 43 ~SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 43 FSSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCchHHHHHHHHHHHHcCCEEEEEecC
Confidence 457999999999999999999999764
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.15 Score=40.17 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCChhHHH-HHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSH-AALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~-l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 124 (393)
..+||.|+| +|.+|+. .+..|.+.+ .+|+++.- +..... +.+.+.. +...+.. + +.++++..+
T Consensus 2 kkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d--~~~~~~-~~~~~~~----~~~~~~~---~---~~ell~~~~ 67 (181)
T d1zh8a1 2 RKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTS--RTRSHA-EEFAKMV----GNPAVFD---S---YEELLESGL 67 (181)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEEC--SSHHHH-HHHHHHH----SSCEEES---C---HHHHHHSSC
T ss_pred CCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEe--ccHhhh-hhhhccc----cccceee---e---eeccccccc
Confidence 346999999 7999986 467776644 47776642 222222 2221111 1111222 2 345666678
Q ss_pred CcEEEEcccccCccCCccChHHHHH------------HHHHHHHHHHHHHHhcCCc
Q 016208 125 FDAVMHFAAVAYVGESTLEPLRYYH------------NITSNTLVILEAMAAHKVK 168 (393)
Q Consensus 125 ~d~Vi~~A~~~~~~~~~~~~~~~~~------------~n~~~~~~ll~~~~~~~~~ 168 (393)
+|+|+-+...... ......+.+ .|......+++.+++.++.
T Consensus 68 id~v~I~tp~~~h---~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 68 VDAVDLTLPVELN---LPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp CSEEEECCCGGGH---HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred cceeecccccccc---ccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 9988855432100 000111111 5666777788888887653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.93 E-value=0.044 Score=43.68 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSR 84 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~ 84 (393)
..+||+|+| .|..|-..+..|.++|+ +|+++.+...
T Consensus 3 ~~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 358999999 59999999999999998 5999887543
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.053 Score=50.83 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=64.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCc-------------------hhhhhhhhhcCCCCccEEEEcc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNM-------------------GAVKVLQELFPQPGQLQFIYAD 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 109 (393)
.+|+|+|+ |.+|..+++.|.-.|. .+++++...-... ...+.+.++.+. -+++.+..+
T Consensus 26 s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~-v~i~~~~~~ 103 (529)
T d1yova1 26 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSD-VSGSFVEES 103 (529)
T ss_dssp CEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTT-SBCCEESSC
T ss_pred CCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCC-CcEEEEcCC
Confidence 69999995 7899999999999995 6777754211111 111223333211 233344433
Q ss_pred CCCHHHHH----HHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecceeec
Q 016208 110 LGDAKAVN----KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTCATYG 180 (393)
Q Consensus 110 l~~~~~~~----~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~~vyg 180 (393)
...+. +.+ .++|+||.+.. |......+-+.|++.+++ +|++++.+.||
T Consensus 104 ---~~~~~~~~~~~~--~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip-~i~~~~~G~~G 155 (529)
T d1yova1 104 ---PENLLDNDPSFF--CRFTVVVATQL-----------------PESTSLRLADVLWNSQIP-LLICRTYGLVG 155 (529)
T ss_dssp ---HHHHHHSCGGGG--GGCSEEEEESC-----------------CHHHHHHHHHHHHHHTCC-EEEEEEETTEE
T ss_pred ---chhhhhhHHHHh--cCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCC-EEEEeccCCEE
Confidence 22221 334 57899986642 133345677888888884 88888877776
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.87 E-value=0.069 Score=42.95 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEcc-CCC-HHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD-LGD-AKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~-~~~~~~~~~~~~ 124 (393)
.+.+|+|.|+ |-+|...+..+...|. +|+++++... ..+...++ +...+.-. -.+ .+.+.++....+
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~----rl~~a~~~-----Ga~~~~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA----RLAHAKAQ-----GFEIADLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHT-----TCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch----hhHhhhhc-----cccEEEeCCCcCHHHHHHHHhCCCC
Confidence 3469999985 9999888888888876 6777765321 22222222 34433321 122 244556555568
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|++|.+.|.
T Consensus 95 ~D~vid~vG~ 104 (195)
T d1kola2 95 VDCAVDAVGF 104 (195)
T ss_dssp EEEEEECCCT
T ss_pred cEEEEECccc
Confidence 9999999884
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.13 Score=46.69 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=48.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCc-------------------hhhhhhhhhcCCCCccEEEEc
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNM-------------------GAVKVLQELFPQPGQLQFIYA 108 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 108 (393)
.+||||+|+ |.+|..+++.|...|. ++++++...-... .+.+.++.+.+ .-++..+..
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np-~v~i~~~~~ 114 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP-NCNVVPHFN 114 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST-TCCCEEECS
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC-CCceEeeec
Confidence 368999996 7799999999999997 7888765321111 11222223322 134555555
Q ss_pred cCCCHHHHHHHHhhCCCcEEEEcc
Q 016208 109 DLGDAKAVNKIFAENAFDAVMHFA 132 (393)
Q Consensus 109 Dl~~~~~~~~~~~~~~~d~Vi~~A 132 (393)
++.+.. .+.+ .++|+||.+.
T Consensus 115 ~i~~~~--~~~~--~~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFY--RQFHIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHH--TTCSEEEECC
T ss_pred cccchH--HHHH--Hhcchheecc
Confidence 554432 3456 6889998775
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.71 E-value=0.23 Score=37.87 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=46.5
Q ss_pred CcEEEEE-cCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcE
Q 016208 49 VTHVLVT-GGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDA 127 (393)
Q Consensus 49 ~~~IlIt-GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 127 (393)
.++++|. .+.||+|..++..|.++|.+|+++.+...-... .|-.....+.+.+.+.++++
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-------------------~~~~~~~~~~~~l~~~GV~i 99 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-------------------HFTLEYPNMMRRLHELHVEE 99 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-------------------HHTTCHHHHHHHHHHTTCEE
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-------------------cchhHHHHHHHHHhhccceE
Confidence 3566666 246999999999999999999999875432211 24445667777777778877
Q ss_pred EEEcc
Q 016208 128 VMHFA 132 (393)
Q Consensus 128 Vi~~A 132 (393)
+.+..
T Consensus 100 ~~~~~ 104 (156)
T d1djqa2 100 LGDHF 104 (156)
T ss_dssp EETEE
T ss_pred EeccE
Confidence 76543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.62 E-value=0.08 Score=39.25 Aligned_cols=93 Identities=10% Similarity=0.057 Sum_probs=57.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAV 128 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V 128 (393)
-+|+|.| +|.+|+.|++.+.. .|++++++--..+.... +. -.++.++.. +.+.+..+ ..++++
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G--~~-------I~Gi~V~~~-----~~l~~~~~-~~i~ia 67 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVG--RP-------VRGGVIEHV-----DLLPQRVP-GRIEIA 67 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT--CE-------ETTEEEEEG-----GGHHHHST-TTCCEE
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC--CE-------ECCEEEecH-----HHHHHHHh-hcccEE
Confidence 4899999 69999999998753 47888887543332211 00 035555533 33555553 456665
Q ss_pred EEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecc
Q 016208 129 MHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSSTC 176 (393)
Q Consensus 129 i~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS~ 176 (393)
+-+... ...+.+++.|.+.|++.+.-++..
T Consensus 68 i~~i~~------------------~~~~~I~d~l~~~gIk~I~~f~~~ 97 (126)
T d2dt5a2 68 LLTVPR------------------EAAQKAADLLVAAGIKGILNFAPV 97 (126)
T ss_dssp EECSCH------------------HHHHHHHHHHHHHTCCEEEECSSS
T ss_pred EEeCCH------------------HHHHHHHHHHHHcCCCEEeecCce
Confidence 544321 224567888888899877766553
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.27 E-value=0.055 Score=45.90 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|+|+|+| +|.-|-..+.+|.++|++|+++-+.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence 6899999 4999999999999999999998664
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.22 E-value=0.061 Score=45.35 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=28.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|+|+| .|.+|..++.+|.++|++|+++.+.
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKENKNTALFESG 36 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99999 5999999999999999999999874
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.49 Score=37.95 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=52.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhh-----hhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVK-----VLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
.|||+++| ++..+..+.+.|++.|++|.++.-.+.......+ ....... ..++.+......+.+.+.+.++..
T Consensus 3 ~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 3 SLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAE-EKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHH-HTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhh-ccCccccccccccchhhHHHHhhh
Confidence 48899998 6889999999999999987765422211111000 0000000 135666666666667777777778
Q ss_pred CCcEEEEcccc
Q 016208 124 AFDAVMHFAAV 134 (393)
Q Consensus 124 ~~d~Vi~~A~~ 134 (393)
++|++|-+...
T Consensus 81 ~~d~~v~~~~~ 91 (206)
T d1fmta2 81 QADVMVVVAYG 91 (206)
T ss_dssp TCSEEEEESCC
T ss_pred cceEEEeeccc
Confidence 99988866553
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.14 Score=41.33 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=46.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC-CCCCC--chhhhhhhhhcCCCCccEEEE------ccCCCHHHHHHHH
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN-LSRGN--MGAVKVLQELFPQPGQLQFIY------ADLGDAKAVNKIF 120 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~--~~~~~~~~~~~~~~~~~~~~~------~Dl~~~~~~~~~~ 120 (393)
|||++.| ++..|..+.+.|++.|++|.++.- .++.. ........+ .++.++. -+..+++.+ +.+
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~-----~~ipv~~~~~~~~~~~~~~~~~-~~l 73 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEK-----DGVPVFKYSRWRAKGQALPDVV-AKY 73 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHH-----HTCCEEECSCCEETTEECHHHH-HHH
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHh-----cCCcccccccccccccccHHHH-HHH
Confidence 6899998 788999999999999999987542 11111 111111111 1333222 233444544 445
Q ss_pred hhCCCcEEEEccc
Q 016208 121 AENAFDAVMHFAA 133 (393)
Q Consensus 121 ~~~~~d~Vi~~A~ 133 (393)
++.++|++|-.+.
T Consensus 74 ~~~~~Dliv~~~~ 86 (203)
T d2bw0a2 74 QALGAELNVLPFC 86 (203)
T ss_dssp HTTCCSEEEESSC
T ss_pred HHhCCCceEEeec
Confidence 5678999987653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.78 E-value=0.27 Score=35.54 Aligned_cols=62 Identities=21% Similarity=0.146 Sum_probs=41.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC---CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD---SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
++++|.|| |++|..++..|.+. |.+|+++.+.+.-... .|-.-.+.+.+.+++.+++
T Consensus 21 ~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-------------------~d~~~~~~l~~~l~~~GV~ 80 (117)
T d1aoga2 21 RRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-------------------FDHTLREELTKQLTANGIQ 80 (117)
T ss_dssp SEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-------------------SCHHHHHHHHHHHHHTTCE
T ss_pred CeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-------------------cchHHHHHHHHHHHhcCcE
Confidence 79999995 99999999766654 5689998774422110 1211234566777777888
Q ss_pred EEEEc
Q 016208 127 AVMHF 131 (393)
Q Consensus 127 ~Vi~~ 131 (393)
+..+.
T Consensus 81 v~~~~ 85 (117)
T d1aoga2 81 ILTKE 85 (117)
T ss_dssp EEESC
T ss_pred EEcCC
Confidence 77654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.70 E-value=0.12 Score=42.94 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=30.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
+||+|+| .|..|..++..|.++|++|+++.|..
T Consensus 5 ~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 5 DRIAVVG-GSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6899999 59999999999999999999998743
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.68 E-value=0.23 Score=38.68 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=55.8
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhh
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAE 122 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 122 (393)
+....++|.|.| +|.+|+..++.|.+.. ..+.+++...+...... ..... .+ +.+++..
T Consensus 3 ~~~~k~kv~iIG-~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----~~---~~e~l~~ 63 (172)
T d1lc0a1 3 TNSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSL----------DEVRQ-----IS---LEDALRS 63 (172)
T ss_dssp CCCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEE----------TTEEB-----CC---HHHHHHC
T ss_pred CCCCCcEEEEEc-CCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHh----------hccCc-----CC---HHHHHhC
Confidence 445568999999 6999999888876542 22333332222111000 11111 12 4556666
Q ss_pred CCCcEEEEcccccCccCCccChHHHHH------------HHHHHHHHHHHHHHhcCCc
Q 016208 123 NAFDAVMHFAAVAYVGESTLEPLRYYH------------NITSNTLVILEAMAAHKVK 168 (393)
Q Consensus 123 ~~~d~Vi~~A~~~~~~~~~~~~~~~~~------------~n~~~~~~ll~~~~~~~~~ 168 (393)
.++|+|+-+...... ......+++ .|+.....+++.+++.++.
T Consensus 64 ~~iD~V~I~tp~~~H---~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~ 118 (172)
T d1lc0a1 64 QEIDVAYICSESSSH---EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV 118 (172)
T ss_dssp SSEEEEEECSCGGGH---HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred CCcchhhhccccccc---ccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence 788988755432110 001111121 5677788899999988753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.67 E-value=0.13 Score=39.74 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=28.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
..+|+|.|+ |-+|...+..+...|.+|+++++
T Consensus 28 g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~ 59 (168)
T d1rjwa2 28 GEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI 59 (168)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEeec-ccchhhhhHHHhcCCCeEeccCC
Confidence 368999975 99999999999999999999865
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.65 E-value=0.093 Score=44.48 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=29.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|||+|+| +|.-|-..+.+|.++|++|.++.+.
T Consensus 2 KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 7999999 6999999999999999999999764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.57 E-value=0.41 Score=37.54 Aligned_cols=75 Identities=25% Similarity=0.181 Sum_probs=50.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEcc--------------------
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD-------------------- 109 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-------------------- 109 (393)
-+|+|+| .|-.|.+-++-....|..|.+++.+..... .++.+.. .++..+
T Consensus 30 a~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~----~l~~l~~-----~~i~~~~~~~~~~~~~~gyA~~~s~~ 99 (183)
T d1l7da1 30 ARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKE----QVESLGG-----KFITVDDEAMKTAETAGGYAKEMGEE 99 (183)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHH----HHHHTTC-----EECCC---------------------
T ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHH----HHHHhhc-----ceEEEeccccccccccccchhhcCHH
Confidence 5999999 599999999999999999999987544333 2222211 111111
Q ss_pred --CCCHHHHHHHHhhCCCcEEEEcccccC
Q 016208 110 --LGDAKAVNKIFAENAFDAVMHFAAVAY 136 (393)
Q Consensus 110 --l~~~~~~~~~~~~~~~d~Vi~~A~~~~ 136 (393)
....+.+.+.+ .++|+||-.+-+..
T Consensus 100 ~~~~~~~~l~~~l--~~aDlVI~talipG 126 (183)
T d1l7da1 100 FRKKQAEAVLKEL--VKTDIAITTALIPG 126 (183)
T ss_dssp --CCHHHHHHHHH--TTCSEEEECCCCTT
T ss_pred HHHHHHHHHHHHH--HhhhhheeeeecCC
Confidence 12245566667 78999998887653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.50 E-value=0.1 Score=44.89 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=30.0
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
.++|+|+| +|..|-..+..|.++|++|.++.+.
T Consensus 30 pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 30 PKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp CCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 37999999 6999999999999999999999764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.48 E-value=0.092 Score=40.10 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
.+.++|||+|| |.+|..-++.|++.|.+|++++.
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 56699999996 99999999999999999999853
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.43 E-value=0.39 Score=37.21 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEc-cCC-CHHHHHHHHhhCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA-DLG-DAKAVNKIFAENA 124 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~-~~~~~~~~~~~~~ 124 (393)
...+|+|+|+ |-+|...+..+...|. +|+++++...+ .+...++ +--+++.. +-. ..+.+.......+
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r----l~~a~~~----GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDK----FEKAKVF----GATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHHHHT----TCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHH----HHHHHHc----CCcEEEcCCCcchhHHHHHHhhccCC
Confidence 3468999996 6677777777777765 68877653322 2223332 22233322 221 2355666665578
Q ss_pred CcEEEEcccc
Q 016208 125 FDAVMHFAAV 134 (393)
Q Consensus 125 ~d~Vi~~A~~ 134 (393)
+|+||.+.|.
T Consensus 99 ~d~vid~~G~ 108 (175)
T d1cdoa2 99 VDFSLECVGN 108 (175)
T ss_dssp BSEEEECSCC
T ss_pred cceeeeecCC
Confidence 9999999985
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.21 E-value=0.088 Score=45.32 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=30.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|..|+|+| +|.-|..+++.|.+.|++|.++.+.+
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 67899999 69999999999999999999997643
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.17 E-value=0.12 Score=40.01 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=28.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHCCC--eEEEEeCC
Q 016208 49 VTHVLVTGGAGYIGSHAALRLLKDSY--RVTIVDNL 82 (393)
Q Consensus 49 ~~~IlItGatG~iG~~l~~~L~~~g~--~V~~~~r~ 82 (393)
++||+|+| .|++|..++..|.+.+. +|+++.+.
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~ 36 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPN 36 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 58999999 59999999999999875 78887654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=90.98 E-value=0.32 Score=40.57 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
...++|+|-| .|.+|+++++.|.+.|..|++++-
T Consensus 34 l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 34 LVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp STTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 3458999999 799999999999999999998754
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.95 E-value=0.57 Score=38.54 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r 81 (393)
...++|+|-| -|.+|+++++.|.+ .|..|++++-
T Consensus 30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD 64 (239)
T d1gtma1 30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD 64 (239)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccc
Confidence 3458999999 69999999999986 5999988754
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.86 E-value=0.61 Score=38.20 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH-CCCeEEEEeC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLK-DSYRVTIVDN 81 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~-~g~~V~~~~r 81 (393)
..+++|+|-| .|.+|+++++.|.+ .|..|++++-
T Consensus 29 l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 29 PKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp TTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence 3458999998 89999999999975 5999998763
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.78 E-value=0.14 Score=44.57 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCC--CeEEEEeCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLS 83 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~ 83 (393)
..||||+|+| +|.-|-..+..|+++| ++|+++-|..
T Consensus 2 ~~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 4679999999 5999999999999876 6999987753
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=90.70 E-value=0.41 Score=34.45 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHH---CCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLK---DSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~ 83 (393)
++++|+| .|++|-.++..|.+ .|.+|+++.|.+
T Consensus 19 ~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEEC-CChHHHHHHHHhHhhcccccccceecccc
Confidence 7999999 59999999987654 488999998754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.68 E-value=0.2 Score=41.05 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
...++|+|+| +|..|-..+..|.++|++|+++.+..
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecc
Confidence 4558999999 59999999999999999999997644
|
| >d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.65 Score=37.08 Aligned_cols=88 Identities=9% Similarity=0.129 Sum_probs=55.0
Q ss_pred CCCcEEEEEcCCChhHHH-HHHHH---HHC-----CCeEEEEeCCCCCCchhhhhhhhhcCC-----------CCccEEE
Q 016208 47 PGVTHVLVTGGAGYIGSH-AALRL---LKD-----SYRVTIVDNLSRGNMGAVKVLQELFPQ-----------PGQLQFI 106 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~-l~~~L---~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 106 (393)
.....++|+||||-+... |.-.| ... +..|+++.|..-+.++-.+.+...... ...+.++
T Consensus 18 ~~~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~ 97 (203)
T d1qkia1 18 SDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYV 97 (203)
T ss_dssp SCCEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECC
T ss_pred CCCcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhccc
Confidence 344789999999999876 33443 333 458999998664433322222211111 1468889
Q ss_pred EccCCCHHHHHHHHh---h----CCCcEEEEcccc
Q 016208 107 YADLGDAKAVNKIFA---E----NAFDAVMHFAAV 134 (393)
Q Consensus 107 ~~Dl~~~~~~~~~~~---~----~~~d~Vi~~A~~ 134 (393)
.+|+.+++++..+-+ . .....|+++|-+
T Consensus 98 ~~d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvp 132 (203)
T d1qkia1 98 AGQYDDAASYQRLNSHMNALHLGSQANRLFYLALP 132 (203)
T ss_dssp BCCTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSC
T ss_pred cCcCCChhhHHHHHHHHHHHhcCCCcceEEEEecC
Confidence 999999988765422 1 234578888853
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=90.39 E-value=0.1 Score=40.53 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=41.6
Q ss_pred cEEEEEcCCChhHHHHHHH-HHHC-----CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 50 THVLVTGGAGYIGSHAALR-LLKD-----SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~-L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
|||.|.|| |-+|..++-. |+.. +.++..++................... ....... .+. .+.+ .
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~--~~~~~~t--~~~---~~~l--~ 70 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD--RFKVLIS--DTF---EGAV--V 70 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT--SSEEEEC--SSH---HHHH--T
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhcc--CceEEEe--cCc---cccc--C
Confidence 68999997 5577666533 3221 358999886433222222222222221 2232221 122 3556 7
Q ss_pred CCcEEEEccccc
Q 016208 124 AFDAVMHFAAVA 135 (393)
Q Consensus 124 ~~d~Vi~~A~~~ 135 (393)
++|+||..|+..
T Consensus 71 ~aDvVVita~~~ 82 (162)
T d1up7a1 71 DAKYVIFQFRPG 82 (162)
T ss_dssp TCSEEEECCCTT
T ss_pred CCCEEEEecccC
Confidence 999999999864
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.71 E-value=0.12 Score=43.77 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=28.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
+|+|+|| |-.|..++..|.+.|++|.++.+.
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQ 34 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 7999995 999999999999999999999764
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=89.57 E-value=0.8 Score=33.97 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=57.5
Q ss_pred cEEEEEcCC---ChhHHHHHHHHHHCCCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHH----HHHHHHh
Q 016208 50 THVLVTGGA---GYIGSHAALRLLKDSYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAK----AVNKIFA 121 (393)
Q Consensus 50 ~~IlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----~~~~~~~ 121 (393)
++|.|+||| +-.|..+++.|++.|+.++.+.-..... -.-......+...+..++.+..=+ .++ .+.++.+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~-p~~~v~~~v~~~~~ 92 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFR-PPSALMDHLPEVLA 92 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECS-CHHHHTTTHHHHHH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEec-cHHHHHHHHHHHHh
Confidence 789999998 5689999999999999998874321111 111111112222223334333322 222 2444443
Q ss_pred hCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q 016208 122 ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V 171 (393)
.++..++-..|... ..+.+.|+++|+ ++|
T Consensus 93 -~g~k~i~~q~G~~~-------------------~e~~~~a~~~Gi-~vV 121 (136)
T d1iuka_ 93 -LRPGLVWLQSGIRH-------------------PEFEKALKEAGI-PVV 121 (136)
T ss_dssp -HCCSCEEECTTCCC-------------------HHHHHHHHHTTC-CEE
T ss_pred -hCCCeEEEecCccC-------------------HHHHHHHHHcCC-EEE
Confidence 46777776665421 146788999998 455
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.55 E-value=0.35 Score=37.52 Aligned_cols=121 Identities=13% Similarity=0.041 Sum_probs=59.5
Q ss_pred cEEEEEcC-CChhHHHHHHHHHHC----CCeEEEEeCCCCCC-chhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhC
Q 016208 50 THVLVTGG-AGYIGSHAALRLLKD----SYRVTIVDNLSRGN-MGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAEN 123 (393)
Q Consensus 50 ~~IlItGa-tG~iG~~l~~~L~~~----g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 123 (393)
|||.|+|| +.+.+..++..++.. +.++..++...... ......+........+.......-+|. .+++ .
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~al--~ 76 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRAL--D 76 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHHH--T
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhhc--C
Confidence 78999996 334445555555443 23788876532211 111111111000001122222222233 4456 7
Q ss_pred CCcEEEEcccccCccCCccC------------------hHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 124 AFDAVMHFAAVAYVGESTLE------------------PLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 124 ~~d~Vi~~A~~~~~~~~~~~------------------~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
+.|+||..|+.........+ ......-|+.-.+.+++.+.+....-++..-|
T Consensus 77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 99999999986532110000 01122356777777888888776555555444
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.52 E-value=0.19 Score=40.06 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=27.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHC--CCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 83 (393)
|||+|+| .|++|..++..|.+. +.+|+++.|..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7899999 599999999999886 46888887643
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.51 Score=35.07 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=27.4
Q ss_pred cEEEEEcCCChhHHHHHHHHH----HCCCeEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLL----KDSYRVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~----~~g~~V~~~~r~~ 83 (393)
++|+|.| .|++|..++..|. +.|.+|+.+.+.+
T Consensus 38 k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 38 KSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 6899999 5999999998885 4589999987644
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.02 E-value=0.2 Score=40.75 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.4
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|+| +|.-|...+..|.++|++|.++.+..
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 89999 79999999999999999999997643
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.78 E-value=0.043 Score=45.24 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=24.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVT 77 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~ 77 (393)
|||+|+| .|.+|...+.+|+++|++|+
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCce
Confidence 6899999 59999999999999997543
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=87.58 E-value=1.9 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=22.9
Q ss_pred cEEEEEcC-C-Chh--HHHHHHHHHHCCCeEEEEeC
Q 016208 50 THVLVTGG-A-GYI--GSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGa-t-G~i--G~~l~~~L~~~g~~V~~~~r 81 (393)
|||+|++| | |.+ +.+|+++|.++||+|..++.
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 57888764 3 333 33488999999999988764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.44 E-value=0.3 Score=40.94 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=28.5
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|+| .|..|..++.+|.++|++|.++.+..
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 89999 59999999999999999999998743
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.41 E-value=0.28 Score=38.20 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
++|+|.| +|++|..++..|.+.|.+|.++.+.
T Consensus 4 ~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 4 DNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCEEEEC-CcHHHHHHHHHHHHcCCceEEEEec
Confidence 6899999 5999999999999999887665443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=87.22 E-value=0.11 Score=40.64 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=42.9
Q ss_pred cEEEEEcCCChhHHH-HHHHHHHC-----CCeEEEEeCCCCCCchhhhhhhhhcCC-CCccEEE-EccCCCHHHHHHHHh
Q 016208 50 THVLVTGGAGYIGSH-AALRLLKD-----SYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFI-YADLGDAKAVNKIFA 121 (393)
Q Consensus 50 ~~IlItGatG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~-~~Dl~~~~~~~~~~~ 121 (393)
.||.|.|| |.+|.. ++..|+.+ +.+++.++............+...... ....... ..| ..+++
T Consensus 4 ~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~eal- 75 (167)
T d1u8xx1 4 FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTD------PEEAF- 75 (167)
T ss_dssp EEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESC------HHHHH-
T ss_pred ceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCC------hhhcc-
Confidence 68999998 545654 44555543 248888876433322112222221110 1223332 233 25667
Q ss_pred hCCCcEEEEcccccC
Q 016208 122 ENAFDAVMHFAAVAY 136 (393)
Q Consensus 122 ~~~~d~Vi~~A~~~~ 136 (393)
.++|+||..|+...
T Consensus 76 -~~AD~Vvitag~~~ 89 (167)
T d1u8xx1 76 -TDVDFVMAHIRVGK 89 (167)
T ss_dssp -SSCSEEEECCCTTH
T ss_pred -CCCCEEEECCCcCC
Confidence 79999999998753
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.42 Score=40.76 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=28.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
.||+|+| +|.-|-..+..|.++|++|.++-.
T Consensus 6 ~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa 36 (449)
T d2dw4a2 6 GKVIIIG-SGVSGLAAARQLQSFGMDVTLLEA 36 (449)
T ss_dssp CEEEEEC-CBHHHHHHHHHHHHTTCEEEEECS
T ss_pred CcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeC
Confidence 5899999 699999999999999999999854
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=86.86 E-value=0.26 Score=37.83 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCc
Q 016208 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFD 126 (393)
Q Consensus 47 ~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 126 (393)
..+|+++|.| =|.+|+-++++|...|.+|+++...+ . ..++... .+.+.. .+.+++ ...|
T Consensus 21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DP---i---~alqA~m---dGf~v~--------~~~~a~--~~aD 80 (163)
T d1v8ba1 21 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDP---I---CAIQAVM---EGFNVV--------TLDEIV--DKGD 80 (163)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH---H---HHHHHHT---TTCEEC--------CHHHHT--TTCS
T ss_pred ecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCc---h---hhHHHHh---cCCccC--------chhHcc--ccCc
Confidence 4568999999 89999999999999999999975432 2 2222221 233322 234666 6789
Q ss_pred EEEEcccccC
Q 016208 127 AVMHFAAVAY 136 (393)
Q Consensus 127 ~Vi~~A~~~~ 136 (393)
+||-+.|..+
T Consensus 81 i~vTaTGn~~ 90 (163)
T d1v8ba1 81 FFITCTGNVD 90 (163)
T ss_dssp EEEECCSSSS
T ss_pred EEEEcCCCCc
Confidence 9988877543
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.48 E-value=0.51 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIV 79 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~ 79 (393)
|||||+| +|.=-.+|+..|.+..++|+++
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~ 29 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFY 29 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEe
Confidence 7999999 7888899999999999999986
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.02 E-value=0.49 Score=39.24 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=29.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 83 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 83 (393)
++|+|+| .|..|..++..|.+.|. .|.++.+..
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 7899999 59999999999999994 888887743
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=85.61 E-value=2.3 Score=32.57 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=27.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
|||.|=| =|-||+.+.+.|.+++.+|.++.-
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd 31 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALIND 31 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECC
Confidence 5899998 799999999999999999998864
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.59 E-value=0.37 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=28.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 83 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 83 (393)
+|+|+| .|-+|..++.+|.++|. +|.++.+..
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 699999 59999999999999995 799998753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.41 E-value=0.5 Score=36.03 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=26.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
||+|+| .|++|..++..|. ++.+|+++.+..
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cCCCEEEEeccc
Confidence 899999 5999999999985 578999987643
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=85.36 E-value=1.9 Score=32.65 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=22.6
Q ss_pred cEEEEEcCCChhHHH-HHHHHHHC-CCeEEEEe
Q 016208 50 THVLVTGGAGYIGSH-AALRLLKD-SYRVTIVD 80 (393)
Q Consensus 50 ~~IlItGatG~iG~~-l~~~L~~~-g~~V~~~~ 80 (393)
+||.|+| +|.+|.. .+..|... +.+++++.
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~ 33 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAW 33 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEE
Confidence 7899999 6999975 56666654 67877765
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=84.98 E-value=2.1 Score=30.59 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=28.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeC
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r 81 (393)
.||+|-|-||..|+.-+++.++.|-+|.+=..
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVt 38 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVT 38 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEEEEc
Confidence 58999999999999999999999998887543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=84.52 E-value=0.48 Score=36.47 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=21.9
Q ss_pred cEEEEEcCCChhHHH-HHHHHHHC-CCeEEEEeC
Q 016208 50 THVLVTGGAGYIGSH-AALRLLKD-SYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGatG~iG~~-l~~~L~~~-g~~V~~~~r 81 (393)
+||.|+| .|.+|+. .+..|.+. +.++.++++
T Consensus 2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~ 34 (167)
T d1xeaa1 2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTR 34 (167)
T ss_dssp EEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECS
T ss_pred eEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 7999999 6889976 56666555 457766544
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.18 E-value=1.8 Score=32.81 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHH-CCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEcccccCcc
Q 016208 60 YIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVG 138 (393)
Q Consensus 60 ~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~ 138 (393)
-+|..++..+++ .||+|+-+.... .++++.+++.+.++|+|.-.+-..
T Consensus 20 diG~~iv~~~l~~~G~~Vi~LG~~~----------------------------p~e~~~~~~~~~~~d~i~lS~l~~--- 68 (156)
T d3bula2 20 DIGKNIVGVVLQCNNYEIVDLGVMV----------------------------PAEKILRTAKEVNADLIGLSGLIT--- 68 (156)
T ss_dssp CHHHHHHHHHHHTTTCEEEECCSSB----------------------------CHHHHHHHHHHHTCSEEEEECCST---
T ss_pred hHHHHHHHHHHHHCCCEEEECCCCC----------------------------CHHHHHHHHHhhCCCEEEEecccc---
Confidence 589999877775 499998764321 366677777778999997666432
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 139 ESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 139 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
..+.....+++.+++.+.+..|+++.
T Consensus 69 -----------~~~~~~~~~~~~l~~~g~~~~vivGG 94 (156)
T d3bula2 69 -----------PSLDEMVNVAKEMERQGFTIPLLIGG 94 (156)
T ss_dssp -----------HHHHHHHHHHHHHHHTTCCSCEEEES
T ss_pred -----------cchHHHHHHHHHHHhccccceEEEec
Confidence 23566778899999988655555554
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.52 E-value=0.52 Score=38.43 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=28.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-eEEEEeCCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLS 83 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 83 (393)
+|+|+| +|.-|-..+..|.++|+ +|+++.+.+
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 699999 59999999999999996 799987643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=82.66 E-value=0.59 Score=40.79 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=28.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 51 ~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
-|+|+| +|+-|..++.+|.+.|++|.++-+.
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 489999 7999999999999999999999773
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=82.46 E-value=1.9 Score=35.61 Aligned_cols=111 Identities=14% Similarity=-0.024 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEEEcccccCcc
Q 016208 59 GYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVG 138 (393)
Q Consensus 59 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A~~~~~~ 138 (393)
..+-..+-+++.++|++|.+..-.........+.++.+.....+.-++..+..+.+.+...+...++-+|+..... ...
T Consensus 16 ~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~-~~~ 94 (271)
T d1jyea_ 16 SQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSD-QTP 94 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCT-TSS
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhcCCCeeeeeccc-ccc
Confidence 3456677788889999998764322233334444555443333333445555555555555555666666654321 111
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEeec
Q 016208 139 ESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSST 175 (393)
Q Consensus 139 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~SS 175 (393)
. ....-.|..+...+++.+.+.|.+++.++++
T Consensus 95 -~----~~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~ 126 (271)
T d1jyea_ 95 -I----NSIIFSHEDGTRLGVEHLVALGHQQIALLAG 126 (271)
T ss_dssp -S----CEEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred -C----Cccccchhhccccceeeeecccccccccccc
Confidence 1 1112245667777788877888889988874
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.06 E-value=4.5 Score=29.19 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=55.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
.||+|-|-||..|+.-+++.++.|-+|.+-........ . ..++.-.+++.++.++.++|+-+
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~--------------~----~~giPVf~tV~eA~~~~~~daSv 77 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--------------T----HLGLPVFNTVKEAKEQTGATASV 77 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--------------E----ETTEEEESSHHHHHHHHCCCEEE
T ss_pred CeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCc--------------c----ccCccchhhHHHHHHhcCCcEEE
Confidence 68999999999999999999999999887544332211 0 01233344566666666777544
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
-.... -.....++|++. ++++.+|.++
T Consensus 78 IfVPp-----------------~~a~dAi~EAi~-agI~liV~IT 104 (130)
T d1euca1 78 IYVPP-----------------PFAAAAINEAID-AEVPLVVCIT 104 (130)
T ss_dssp ECCCH-----------------HHHHHHHHHHHH-TTCSEEEECC
T ss_pred EecCH-----------------HHHHHHHHHHHh-CCCCEEEEec
Confidence 33211 112334566664 6887666543
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=81.92 E-value=0.23 Score=37.72 Aligned_cols=30 Identities=13% Similarity=-0.019 Sum_probs=19.5
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
|-++| +|.+|+++++.|.+.++.+.+.+|.
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~~~v~~R~ 31 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEIGYILSRS 31 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----CCCEECSS
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 44677 8999999999886654444566664
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=81.87 E-value=2.2 Score=34.22 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCChhHH-HHHHHHHHC-CCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCC
Q 016208 48 GVTHVLVTGGAGYIGS-HAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAF 125 (393)
Q Consensus 48 ~~~~IlItGatG~iG~-~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 125 (393)
+.-||.|+| .|.+|+ +++..+... +.+|+++.- +..+......++. ..+ ...... ..| +.++++..++
T Consensus 32 ~~iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d--~~~~~a~~~~~~~-~i~-~~~~~~--~~d---~~ell~~~~i 101 (221)
T d1h6da1 32 RRFGYAIVG-LGKYALNQILPGFAGCQHSRIEALVS--GNAEKAKIVAAEY-GVD-PRKIYD--YSN---FDKIAKDPKI 101 (221)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEEC--SCHHHHHHHHHHT-TCC-GGGEEC--SSS---GGGGGGCTTC
T ss_pred CCEEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEec--CCHHHHHHHHHhh-ccc-cccccc--cCc---hhhhcccccc
Confidence 335999999 699996 566666554 678887642 2222222222221 111 111111 112 3455655678
Q ss_pred cEEEEcccccCccCCccChHHHHH------------HHHHHHHHHHHHHHhcCC
Q 016208 126 DAVMHFAAVAYVGESTLEPLRYYH------------NITSNTLVILEAMAAHKV 167 (393)
Q Consensus 126 d~Vi~~A~~~~~~~~~~~~~~~~~------------~n~~~~~~ll~~~~~~~~ 167 (393)
|+|+-+...... ......+++ .|......|++.+++.++
T Consensus 102 D~V~I~tp~~~H---~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~ 152 (221)
T d1h6da1 102 DAVYIILPNSLH---AEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 152 (221)
T ss_dssp CEEEECSCGGGH---HHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred eeeeeccchhhh---hhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence 888755432210 000111111 566778888899988875
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=81.85 E-value=0.42 Score=42.56 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=24.6
Q ss_pred cEEEEEcC------CChhH---HHHHHHHHHCCCeEEEEeC
Q 016208 50 THVLVTGG------AGYIG---SHAALRLLKDSYRVTIVDN 81 (393)
Q Consensus 50 ~~IlItGa------tG~iG---~~l~~~L~~~g~~V~~~~r 81 (393)
||||+++. +|.+| .+|+++|.++||+|++++.
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 67888664 35554 6689999999999999863
|
| >d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Leuconostoc mesenteroides [TaxId: 1245]
Probab=81.83 E-value=5.5 Score=31.12 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=48.5
Q ss_pred EEEEEcCCChhHHH-HHHHHH---HC-----CCeEEEEeCCCCCCchhhhhhhhhc----CC-------CCccEEEEccC
Q 016208 51 HVLVTGGAGYIGSH-AALRLL---KD-----SYRVTIVDNLSRGNMGAVKVLQELF----PQ-------PGQLQFIYADL 110 (393)
Q Consensus 51 ~IlItGatG~iG~~-l~~~L~---~~-----g~~V~~~~r~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~Dl 110 (393)
-++|+||||-+.+. |.-.|- .. +..|+++.|.....+.-.+.+.+.. .. -..+.++.+|+
T Consensus 7 ~lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~~~~~~~~~~~~~y~~~~~ 86 (195)
T d1h9aa1 7 LVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDV 86 (195)
T ss_dssp EEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGCSCHHHHHHHHTTEEEEECCT
T ss_pred EEEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCcHHHHHHHHHHHHhhccchHhhHHHHhhccceeeEee
Confidence 45578999999986 333332 22 3579999996655443332222211 00 14688899999
Q ss_pred CCHHHHH---HHHhh------CCCcEEEEcccc
Q 016208 111 GDAKAVN---KIFAE------NAFDAVMHFAAV 134 (393)
Q Consensus 111 ~~~~~~~---~~~~~------~~~d~Vi~~A~~ 134 (393)
.++++.. +.+++ .....||++|-+
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~~~~~~rifYLAvp 119 (195)
T d1h9aa1 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVA 119 (195)
T ss_dssp TCTTTHHHHHHHHHHHHHHHTCCSCEEEEECSC
T ss_pred ccHhhHHHHHHHHHHHHhhcCCCcceEEEEecC
Confidence 8765433 22321 234578888853
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.63 E-value=0.73 Score=39.43 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=28.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 52 IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
|+|+| +|..|-..+..|.++|++|+++.+.+
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 78999 69999999999999999999997643
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.37 E-value=6.5 Score=27.94 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=56.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccCCCHHHHHHHHhhCCCcEEE
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAKAVNKIFAENAFDAVM 129 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi 129 (393)
.||+|-|-||-.|+.-+++.++.|-+|.+=....+.-. ++ .++.-.+++.+++++.++|+-+
T Consensus 8 trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~----------------~~--~giPVf~tV~eAv~~~~~d~Sv 69 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM----------------EV--LGVPVYDTVKEAVAHHEVDASI 69 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC----------------EE--TTEEEESSHHHHHHHSCCSEEE
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCc----------------EE--ECCchHhhHHHHHHhcCCeEEE
Confidence 58999999999999999999999998887544332211 11 1333345667777777777554
Q ss_pred EcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 130 HFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 130 ~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
-.... ......++|+. +++++.+|.++
T Consensus 70 IfVPp-----------------~~a~dAi~EAi-~agI~liv~IT 96 (121)
T d1oi7a1 70 IFVPA-----------------PAAADAALEAA-HAGIPLIVLIT 96 (121)
T ss_dssp ECCCH-----------------HHHHHHHHHHH-HTTCSEEEECC
T ss_pred EeeCH-----------------HHHHHHHHHHH-hCCCcEEEEec
Confidence 33211 11223455555 56887666544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=81.12 E-value=0.73 Score=36.65 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=25.4
Q ss_pred cEEEEEcCCC-hhHH-----HHHHHHHHCCCeEEEEe
Q 016208 50 THVLVTGGAG-YIGS-----HAALRLLKDSYRVTIVD 80 (393)
Q Consensus 50 ~~IlItGatG-~iG~-----~l~~~L~~~g~~V~~~~ 80 (393)
||++||| || .+|. +|+..|.++|++|..++
T Consensus 2 ~~~~i~g-t~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTG-TDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 7999999 66 6665 58899999999999975
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=80.54 E-value=1.1 Score=38.07 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCC
Q 016208 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNL 82 (393)
Q Consensus 48 ~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 82 (393)
+.-.|+|+| .|+.|-.++..|.+.|.+|.++.+.
T Consensus 6 ~~~dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~ 39 (298)
T d1w4xa1 6 EEVDVLVVG-AGFSGLYALYRLRELGRSVHVIETA 39 (298)
T ss_dssp SEEEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 346899999 5999999999999999999998764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=80.09 E-value=0.54 Score=33.22 Aligned_cols=38 Identities=16% Similarity=-0.025 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHCCCeEEEEeCCC
Q 016208 45 HEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 83 (393)
Q Consensus 45 ~~~~~~~IlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 83 (393)
.....|+|+|.| +|.-|.-++..|...+-+|+...|..
T Consensus 28 ~~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 28 ELFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hhcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 446679999999 69999999999998887777666543
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=80.05 E-value=10 Score=29.48 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=61.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHCCC---eEEEEeCCCCCCchhhhhhhhhcCCCCccEEEEccC----------------
Q 016208 50 THVLVTGGAGYIGSHAALRLLKDSY---RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL---------------- 110 (393)
Q Consensus 50 ~~IlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---------------- 110 (393)
+||.|+| -|.-|..++.+|.+.|. +.++++-. .. .+. .......+..+.-
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~v~~iainTD---~~----~L~---~~~a~~ki~iG~~~t~G~G~g~~p~~g~~ 69 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHGVEFVAVNTD---LQ----VLE---ASNADVKIQIGENITRGLGAGGRPEIGEQ 69 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTTEEEEEEESC---HH----HHH---TCCCSEEEECCTTTTTTSCCTTCHHHHHH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCceEEEEEcCC---HH----HHh---cCCcceEEecccccCCCcccccCchhhHh
Confidence 5799999 69999999999998763 55555421 11 111 1112223333311
Q ss_pred ---CCHHHHHHHHhhCCCcEEEEcccccCccCCccChHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Q 016208 111 ---GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIYSS 174 (393)
Q Consensus 111 ---~~~~~~~~~~~~~~~d~Vi~~A~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~V~~S 174 (393)
.+.+.+.+.+ .++|.||-+||...- .-.-++-.+.+.|++.++..+-+++
T Consensus 70 aa~e~~~~I~~~l--~~~d~vfi~AGlGGg------------TGtgaapviA~~ake~g~lvv~ivt 122 (194)
T d1w5fa1 70 AALESEEKIREVL--QDTHMVFITAGFGGG------------TGTGASPVIAKIAKEMGILTVAIVT 122 (194)
T ss_dssp HHHHTHHHHHHHT--TTCSEEEEEEETTSS------------HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEEecCCC------------cccchHHHHHHHHHHcCCceEEEEe
Confidence 1345666777 789999999997643 1234556788999998874333333
|