Citrus Sinensis ID: 016228

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---

MIACLSSNLPNLHSTPTAPGQTTSEPDSKPQARKLKSSPQLNRWSRARAVRSGRKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY

cccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccEEEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccHHHHHHHHcccEEEEcccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHcccccccccccccc

cEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccHHHHHHHHcccEEEEccccccccccHHHHccccccEEEEEEcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHcccccccccccccc

miaclssnlpnlhstptapgqttsepdskpqarklksspqlnrWSRARAVRSgrkldrlghrspqssvnfkvrdrdgvdleperisdgednveamegKSIYMVSDGTGWTAEHAVNAALGQFEHClvdrncavnthlfSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACelwgipstdvlgPITEAIAShlgvspsglprgapgrnfplseeYFRRIEAIEFTIkqddgalpqnlqkadiilsgvsrtgktpLSIYLAQkgykvanvpivmgvelpkslfqvdpekvfgltinPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGrifaqnpvwpvIEVTGKAIEETAAVVLRLYHdrkhkcsmpriskry

miaclssnlpnlhstptapgqttsepdskpqarklksspqlnrwsraravrsgrkldrlghrspqssvnfkvrdrdgvdleperisdgednveamegKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLgvspsglprgAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIilsgvsrtgKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKArarslgfrdeirsnyseMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLyhdrkhkcsmpriskry

**************************************************************************************************SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGV*************FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR*************

**************************************************************************************************SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHL***************FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR****RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH***************

MIACLSSNLPNLHS*************************QLNRWSRARAVRSGRKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY

******S***********************************************************************************NVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		393	2.2.26 [Sep-21-2011]
Q8GVP6		471	Probable pyruvate, phosph	yes	no	0.910	0.760	0.644	1e-136
A2YM35		471	Probable pyruvate, phosph	N/A	no	0.910	0.760	0.644	1e-136
Q195N6		426	Pyruvate, phosphate dikin	N/A	no	0.959	0.884	0.606	1e-133
O49562		403	Pyruvate, phosphate dikin	yes	no	0.961	0.937	0.614	1e-133
Q9MAC9		377	Pyruvate, phosphate dikin	no	no	0.908	0.946	0.617	1e-125
B9LZ47		269	Putative pyruvate, phosph	yes	no	0.666	0.973	0.442	2e-59
A5G9G7		269	Putative pyruvate, phosph	yes	no	0.671	0.981	0.425	5e-57
A9G8M9		281	Putative pyruvate, phosph	yes	no	0.704	0.985	0.413	5e-56
C6DY36		270	Putative pyruvate, phosph	yes	no	0.674	0.981	0.401	9e-54
B5E9X5		270	Putative pyruvate, phosph	yes	no	0.674	0.981	0.401	1e-53

>sp\|Q8GVP6\|PDRP1_ORYSJ Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PDRP1 PE=2 SV=2	Back alignment and function desciption

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/377 (64%), Positives = 297/377 (78%), Gaps = 19/377 (5%)

Query: 28  SKPQARKLKSSPQLNRWSRARAVRSGRKL------DRL--GHRSPQSSVNFKVRDRDGVD 79
           + P++     S QL+RWSRARA RSGR+L      DR   G  SP +         +   
Sbjct: 74  TTPRSPAQLGSSQLHRWSRARAHRSGRRLEWPTIRDRGSGGASSPPTPTRPHPSSDEAAS 133

Query: 80  LEPERISDGEDNVEAM----EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNT 135
              +   + ED    +      KSIYMVSDGTGWTAEH+VNAALGQFEHCLVDR CAVNT
Sbjct: 134 AAAKVAVEEEDGYGVVGRDEAAKSIYMVSDGTGWTAEHSVNAALGQFEHCLVDRGCAVNT 193

Query: 136 HLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVL 195
           HLF+G      IDD+++L+ I+KQAAK+GA+++YTLADPSMAE+ KKACELWG+PS D+L
Sbjct: 194 HLFNG------IDDMDRLIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDIL 247

Query: 196 GPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 255
            P  EAIASH+GV+PSG+PR +P R   L+E+YFRRIEAI+FTIKQDDGA PQNL +A I
Sbjct: 248 RPTIEAIASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHI 307

Query: 256 ILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSI 315
           +L GVSRTGKTPLSIYLAQKGYKVANVPIVMGV LPKSLF++D +K+FGLTINP+VLQ+I
Sbjct: 308 VLVGVSRTGKTPLSIYLAQKGYKVANVPIVMGVNLPKSLFEIDQDKIFGLTINPVVLQAI 367

Query: 316 RKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLR 375
           RKARA++LGF  + +SNY+EM++VR EL+ A +IFAQ+P+WPVIEVTGKAIEETAAVV+R
Sbjct: 368 RKARAKTLGFHGQ-KSNYAEMEHVRGELDHANQIFAQHPIWPVIEVTGKAIEETAAVVVR 426

Query: 376 LYHDRKHKCSMPRISKR 392
           ++HDRK KC+MPRISKR
Sbjct: 427 IFHDRKQKCAMPRISKR 443

Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation. Dark/light-induced changes in stromal concentrations of the competing ADP and Pi substrates govern the direction of the reaction. In the dark, phosphorylates the catalytic intermediate of PPDK (PPDK-HisP), inactivating it. Light exposure induces the phosphorolysis reaction that reactivates PPDK.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: nEC: 1

>sp\|A2YM35\|PDRP1_ORYSI Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. indica GN=PDRP1 PE=3 SV=1	Back alignment and function description

>sp\|Q195N6\|PDRP1_MAIZE Pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Zea mays GN=PDRP1 PE=1 SV=1	Back alignment and function description

>sp\|O49562\|PDRP1_ARATH Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic OS=Arabidopsis thaliana GN=RP1 PE=2 SV=1	Back alignment and function description

>sp\|Q9MAC9\|PDRP2_ARATH Pyruvate, phosphate dikinase regulatory protein 2 OS=Arabidopsis thaliana GN=RP2 PE=2 SV=1	Back alignment and function description

>sp\|B9LZ47\|PDRP_GEOSF Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter sp. (strain FRC-32) GN=Geob_0410 PE=3 SV=1	Back alignment and function description

>sp\|A5G9G7\|PDRP_GEOUR Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter uraniireducens (strain Rf4) GN=Gura_4292 PE=3 SV=1	Back alignment and function description

>sp\|A9G8M9\|PDRP_SORC5 Putative pyruvate, phosphate dikinase regulatory protein OS=Sorangium cellulosum (strain So ce56) GN=sce5851 PE=3 SV=1	Back alignment and function description

>sp\|C6DY36\|PDRP_GEOSM Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter sp. (strain M21) GN=GM21_0226 PE=3 SV=1	Back alignment and function description

>sp\|B5E9X5\|PDRP_GEOBB Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=Gbem_0242 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		393
225444395		424	PREDICTED: probable pyruvate, phosphate	0.974	0.903	0.741	1e-170
224076368		366	predicted protein [Populus trichocarpa]	0.916	0.983	0.783	1e-168
255555003		407	conserved hypothetical protein [Ricinus	0.941	0.909	0.771	1e-167
449454704		403	PREDICTED: probable pyruvate, phosphate	0.923	0.900	0.739	1e-160
449488377		403	PREDICTED: probable pyruvate, phosphate	0.923	0.900	0.739	1e-160
351724073		382	pyruvate orthophosphate dikinase regulat	0.946	0.973	0.682	1e-148
356536061		382	PREDICTED: pyruvate, phosphate dikinase	0.951	0.979	0.688	1e-148
302144062		286	unnamed protein product [Vitis vinifera]	0.727	1.0	0.863	1e-148
414886958		420	TPA: hypothetical protein ZEAMMB73_12061	0.969	0.907	0.617	1e-138
161598363		419	pyruvate orthophosphate dikinase regulat	0.961	0.902	0.622	1e-136

>gi\|225444395\|ref\|XP_002268248.1\| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/402 (74%), Positives = 331/402 (82%), Gaps = 19/402 (4%)

Query: 5   LSSNLPNLHSTPTAPGQTTSEPDSKPQAR-----------KLKSSPQLNRWSRARAVRSG 53
            SS+ P   ST   P    + P S P ++           K K SPQLNRWSRARA+RSG
Sbjct: 29  FSSHRPTAASTTNYPKPNPTNPISLPNSQANRAPSDSDPPKFKGSPQLNRWSRARAIRSG 88

Query: 54  RKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISD--GEDNVEAMEGKSIYMVSDGTGWTA 111
           RKL+R G RS    +N +V+ ++ V   P   S   G D+ E   GKSIYMVSDGTGWT 
Sbjct: 89  RKLERQGQRSQVVEMNSRVQPKESVSSPPTSASGAPGNDDGEVRTGKSIYMVSDGTGWTV 148

Query: 112 EHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTL 171
           EHAVNAALGQFEHCLVDR C VNTHLFSG      IDD E L+ I+KQAAK+GAMLVYTL
Sbjct: 149 EHAVNAALGQFEHCLVDRGCPVNTHLFSG------IDDAEPLVEIVKQAAKEGAMLVYTL 202

Query: 172 ADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRR 231
           ADPSMAESA++AC+LWGIPSTDVLGPITEA+ASHLGVSPSGLPRGAPGR FPLSEEYF+R
Sbjct: 203 ADPSMAESARQACKLWGIPSTDVLGPITEAVASHLGVSPSGLPRGAPGRKFPLSEEYFKR 262

Query: 232 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELP 291
           IEAIEFTIKQDDGALPQNL KA+I+L+GVSRTGKTPLSIYLAQKGYKVANVPIV+GVELP
Sbjct: 263 IEAIEFTIKQDDGALPQNLHKAEIVLAGVSRTGKTPLSIYLAQKGYKVANVPIVIGVELP 322

Query: 292 KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA 351
            +LF+V+PEKVFGLTINP+VL +IRKARA+SLGF +EIRSNYSEMD+VR ELEFAG+IFA
Sbjct: 323 NTLFEVEPEKVFGLTINPVVLHTIRKARAKSLGFCEEIRSNYSEMDHVRAELEFAGKIFA 382

Query: 352 QNPVWPVIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY 393
           QNP WPVIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY
Sbjct: 383 QNPAWPVIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224076368\|ref\|XP_002304932.1\| predicted protein [Populus trichocarpa] gi\|222847896\|gb\|EEE85443.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255555003\|ref\|XP_002518539.1\| conserved hypothetical protein [Ricinus communis] gi\|223542384\|gb\|EEF43926.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449454704\|ref\|XP_004145094.1\| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like [Cucumis sativus] gi\|449471956\|ref\|XP_004153453.1\| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449488377\|ref\|XP_004158018.1\| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|351724073\|ref\|NP_001236533.1\| pyruvate orthophosphate dikinase regulatory protein [Glycine max] gi\|161598361\|gb\|ABX74942.1\| pyruvate orthophosphate dikinase regulatory protein [Glycine max]	Back alignment and taxonomy information

>gi\|356536061\|ref\|XP_003536559.1\| PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|302144062\|emb\|CBI23167.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|414886958\|tpg\|DAA62972.1\| TPA: hypothetical protein ZEAMMB73_120613 [Zea mays]	Back alignment and taxonomy information

>gi\|161598363\|gb\|ABX74943.1\| pyruvate orthophosphate dikinase regulatory protein [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		393
TAIR\|locus:2127413		403	RP1 "AT4G21210" [Arabidopsis t	0.961	0.937	0.616	8.5e-120
TAIR\|locus:2102077		377	RP2 "PPDK regulatory protein 2	0.949	0.989	0.613	2.5e-113
UNIPROTKB\|Q74G02		269	GSU0450 "Putative pyruvate, ph	0.661	0.966	0.395	1.4e-48
TIGR_CMR\|GSU_0450		269	GSU_0450 "conserved hypothetic	0.661	0.966	0.395	1.4e-48
UNIPROTKB\|Q3AEY1		277	CHY_0442 "Putative pyruvate, p	0.659	0.935	0.374	1.9e-42
TIGR_CMR\|CHY_0442		277	CHY_0442 "conserved hypothetic	0.659	0.935	0.374	1.9e-42
UNIPROTKB\|Q71YF0		270	LMOf2365_1895 "Putative pyruva	0.661	0.962	0.395	2.6e-40
UNIPROTKB\|Q71ZL3		274	LMOf2365_1476 "Putative pyruva	0.664	0.952	0.35	7.8e-39
UNIPROTKB\|Q81LU1		270	BAS4196 "Putative pyruvate, ph	0.580	0.844	0.398	1.5e-37
TIGR_CMR\|BA_4520		270	BA_4520 "conserved hypothetica	0.580	0.844	0.398	1.5e-37

TAIR\|locus:2127413 RP1 "AT4G21210" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
 Identities = 246/399 (61%), Positives = 297/399 (74%)

Query:     5 LSSNLPNLHSTPTAPGQTT---SEPDSKPQARKLKSSPQLNRWSRARAVRSGRKLDRL-- 59
             +SSNL N +S P      +   SEP S+ + RK  S  QLNRW+RAR +RSG KLD    
Sbjct:    16 ISSNL-NPNSKPAGSDSVSLNASEPGSERKPRKFSS--QLNRWNRARTLRSGAKLDSTIT 72

Query:    60 -GHRS---PQSSVNFKVR-DRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHA 114
              G  +   P   +    R D   +D +    S+G    +    KSIY+VSDGTGWTAEHA
Sbjct:    73 NGSNNTTGPMRPIESSSRTDVSTLDSDVSSSSNGVSEADMTAAKSIYIVSDGTGWTAEHA 132

Query:   115 VNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADP 174
             VNAALGQF++CLVDR C VNTHLFSG      I+D E+LM IIKQAA++GAM++YTLADP
Sbjct:   133 VNAALGQFDYCLVDRGCPVNTHLFSG------IEDGEKLMEIIKQAAREGAMVIYTLADP 186

Query:   175 SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEA 234
             SMAE+  +AC+LW IPS D+LGPITE+I+SHLG +PSGL RG    N  L+E+YF+RIEA
Sbjct:   187 SMAEATMRACKLWKIPSLDILGPITESISSHLGTNPSGLSRGIT--NSSLNEDYFKRIEA 244

Query:   235 IEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSL 294
             IEFTIK DDGALP+NL+KADI+L GVSRTGKTPLS YLAQKGYKV+NVPIV GV+LPK+L
Sbjct:   245 IEFTIKHDDGALPENLEKADIVLVGVSRTGKTPLSTYLAQKGYKVSNVPIVNGVDLPKTL 304

Query:   295 FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNP 354
             F++DP KVFGL INPLVLQ IR+ARA+SLG     ++ YSE+  V+EELE A +IFA+NP
Sbjct:   305 FEIDPRKVFGLMINPLVLQGIREARAKSLGLGSSFKTKYSELGSVKEELELAKKIFAENP 364

Query:   355 VWPVIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY 393
              WPVIEVT  AIEETAAVVLRLY +R+   +MPRISK Y
Sbjct:   365 TWPVIEVTESAIEETAAVVLRLYDERQSNRAMPRISKSY 403

GO:0004672 "protein kinase activity" evidence=IDA;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR\|locus:2102077 RP2 "PPDK regulatory protein 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q74G02 GSU0450 "Putative pyruvate, phosphate dikinase regulatory protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0450 GSU_0450 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3AEY1 CHY_0442 "Putative pyruvate, phosphate dikinase regulatory protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0442 CHY_0442 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|Q71YF0 LMOf2365_1895 "Putative pyruvate, phosphate dikinase regulatory protein 2" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

UNIPROTKB\|Q71ZL3 LMOf2365_1476 "Putative pyruvate, phosphate dikinase regulatory protein 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81LU1 BAS4196 "Putative pyruvate, phosphate dikinase regulatory protein" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4520 BA_4520 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GVP6	PDRP1_ORYSJ	2, ., 7, ., 4, ., n, 1	0.6445	0.9109	0.7600	yes	no
O49562	PDRP1_ARATH	2, ., 7, ., 4, ., n, 1	0.6140	0.9618	0.9379	yes	no
Q195N6	PDRP1_MAIZE	2, ., 7, ., 4, ., n, 1	0.6063	0.9592	0.8849	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
4th Layer	2.7.11.n1	0.946
4th Layer	2.7.4.n1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		393
pfam03618		255	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	1e-122
PRK05339		269	PRK05339, PRK05339, PEP synthetase regulatory prot	1e-111
COG1806		273	COG1806, COG1806, Uncharacterized protein conserve	3e-87

>gnl\|CDD\|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	Back alignment and domain information

 Score =  354 bits (911), Expect = e-122
 Identities = 127/275 (46%), Positives = 167/275 (60%), Gaps = 20/275 (7%)

Query: 100 IYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQ 159
           I++VSD TG TAE    AAL QF             H F        I   E+L  ++++
Sbjct: 1   IFLVSDSTGETAETVGRAALSQFP------GVEFEIHRFPF------IRTEEKLEEVLEE 48

Query: 160 AAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPG 219
             ++  ++ YTL DP + E  ++  E  GIP  D+LGP+ E + S LG+ PS      PG
Sbjct: 49  INEEDGIVFYTLVDPELREILEEFAEALGIPCVDLLGPLLEPLESELGIKPSP----EPG 104

Query: 220 RNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKV 279
           R   L E+YF+RIEAIEF +  DDG  P+ L +ADIIL GVSRT KTP S+YLA KG KV
Sbjct: 105 RQHGLDEDYFKRIEAIEFALAHDDGQDPRGLDEADIILVGVSRTSKTPTSLYLANKGIKV 164

Query: 280 ANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYV 339
           AN P+V  V LP+ LF+VD +KVFGLTI+P  L  IR+ R  SLG  +   S Y+ ++  
Sbjct: 165 ANYPLVPEVPLPEELFEVDRKKVFGLTIDPERLHEIRRERLPSLGLDE---SRYASLEQC 221

Query: 340 REELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVL 374
           REEL +A R+F +    PVI+VT K+IEETAA +L
Sbjct: 222 REELAYAERLFRRLG-IPVIDVTNKSIEETAATIL 255

This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity. Length = 255

>gnl\|CDD\|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224719 COG1806, COG1806, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		393
PRK05339		269	PEP synthetase regulatory protein; Provisional	100.0
PF03618		255	Kinase-PPPase: Kinase/pyrophosphorylase; InterPro:	100.0
COG1806		273	Uncharacterized protein conserved in bacteria [Fun	100.0
PRK13947		171	shikimate kinase; Provisional	97.71
PRK04220		301	2-phosphoglycerate kinase; Provisional	97.5
PRK03839		180	putative kinase; Provisional	97.28
COG1936		180	Predicted nucleotide kinase (related to CMP and AM	97.0
PRK03731		171	aroL shikimate kinase II; Reviewed	97.0
PRK05057		172	aroK shikimate kinase I; Reviewed	96.86
PRK05416		288	glmZ(sRNA)-inactivating NTPase; Provisional	96.78
PRK04040		188	adenylate kinase; Provisional	96.72
PRK14738		206	gmk guanylate kinase; Provisional	96.7
PRK04182		180	cytidylate kinase; Provisional	96.6
PRK13477		512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.5
PRK13808		333	adenylate kinase; Provisional	96.47
TIGR02173		171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.35
PRK13949		169	shikimate kinase; Provisional	96.29
PRK00131		175	aroK shikimate kinase; Reviewed	96.14
PRK14532		188	adenylate kinase; Provisional	95.86
PRK13946		184	shikimate kinase; Provisional	95.78
PRK02496		184	adk adenylate kinase; Provisional	95.72
cd00227		175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.66
TIGR01359		183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.57
PRK12339		197	2-phosphoglycerate kinase; Provisional	95.2
PLN02200		234	adenylate kinase family protein	95.19
TIGR01360		188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.19
PRK08154		309	anaerobic benzoate catabolism transcriptional regu	95.09
PRK13948		182	shikimate kinase; Provisional	94.95
PLN02199		303	shikimate kinase	94.73
PRK06762		166	hypothetical protein; Provisional	94.68
TIGR00682		311	lpxK tetraacyldisaccharide 4'-kinase. Also called	94.5
PF13207		121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.27
PRK08233		182	hypothetical protein; Provisional	94.26
PF00625		183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	94.18
PRK00652		325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	94.15
TIGR02322		179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.58
PRK10078		186	ribose 1,5-bisphosphokinase; Provisional	93.51
cd01672		200	TMPK Thymidine monophosphate kinase (TMPK), also k	93.5
PRK00023		225	cmk cytidylate kinase; Provisional	93.38
PRK01906		338	tetraacyldisaccharide 4'-kinase; Provisional	92.97
TIGR00017		217	cmk cytidylate kinase. This family consists of cyt	92.91
PRK14530		215	adenylate kinase; Provisional	92.81
PF02606		326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	92.74
PRK00625		173	shikimate kinase; Provisional	92.74
cd00464		154	SK Shikimate kinase (SK) is the fifth enzyme in th	92.6
PRK11860		661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	92.49
PRK14528		186	adenylate kinase; Provisional	92.18
COG1663		336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	92.13
PF03668		284	ATP_bind_2: P-loop ATPase protein family; InterPro	91.89
smart00072		184	GuKc Guanylate kinase homologues. Active enzymes c	91.68
PRK12297		424	obgE GTPase CgtA; Reviewed	91.19
PRK13975		196	thymidylate kinase; Provisional	91.04
PRK13951		488	bifunctional shikimate kinase/3-dehydroquinate syn	90.58
COG0703		172	AroK Shikimate kinase [Amino acid transport and me	90.35
PRK14527		191	adenylate kinase; Provisional	90.2
COG1219		408	ClpX ATP-dependent protease Clp, ATPase subunit [P	90.05
PRK12337		475	2-phosphoglycerate kinase; Provisional	89.94
PF00899		135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.7
PRK14021		542	bifunctional shikimate kinase/3-dehydroquinate syn	88.97
cd01983		99	Fer4_NifH The Fer4_NifH superfamily contains a var	88.95
PF00004		132	AAA: ATPase family associated with various cellula	88.72
TIGR02729		329	Obg_CgtA Obg family GTPase CgtA. This model descri	88.14
PRK00091		307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	88.03
COG1100		219	GTPase SAR1 and related small G proteins [General	87.87
PRK09518		712	bifunctional cytidylate kinase/GTPase Der; Reviewe	87.63
KOG0745		564	consensus Putative ATP-dependent Clp-type protease	87.44
cd00071		137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	86.91
PRK14737		186	gmk guanylate kinase; Provisional	86.26
PLN02796		347	D-glycerate 3-kinase	85.96
PRK12296		500	obgE GTPase CgtA; Reviewed	85.47
TIGR01313		163	therm_gnt_kin carbohydrate kinase, thermoresistant	84.97
PF13521		163	AAA_28: AAA domain; PDB: 1LW7_A.	84.89
TIGR00176		155	mobB molybdopterin-guanine dinucleotide biosynthes	84.5
TIGR03263		180	guanyl_kin guanylate kinase. Members of this famil	84.11
PRK06217		183	hypothetical protein; Validated	83.99
PF13238		129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	83.99
PRK06526		254	transposase; Provisional	83.72
cd01821		198	Rhamnogalacturan_acetylesterase_like Rhamnogalactu	83.46
cd01428		194	ADK Adenylate kinase (ADK) catalyzes the reversibl	83.26
cd02027		149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	83.1
PRK07261		171	topology modulation protein; Provisional	82.77
PRK00300		205	gmk guanylate kinase; Provisional	82.76
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	82.6
cd00757		228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.35
TIGR01351		210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	82.21
COG0190		283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	82.04
TIGR01526		325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	81.89
TIGR00174		287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	81.7
cd02020		147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	81.67
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	81.46
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	81.22
PF01202		158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	81.1
cd01483		143	E1_enzyme_family Superfamily of activating enzymes	81.03
PF03808		172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	81.03
PLN02165		334	adenylate isopentenyltransferase	80.91
COG2019		189	AdkA Archaeal adenylate kinase [Nucleotide transpo	80.71
PRK08356		195	hypothetical protein; Provisional	80.45
PF08283		106	Gemini_AL1_M: Geminivirus rep protein central doma	80.26
PF03205		140	MobB: Molybdopterin guanine dinucleotide synthesis	80.24
PRK00279		215	adk adenylate kinase; Reviewed	80.17

>PRK05339 PEP synthetase regulatory protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.5e-105  Score=771.71  Aligned_cols=265  Identities=45%  Similarity=0.753  Sum_probs=256.8

Q ss_pred             cCccEEEEEeCChHHHHHHHHHHHHccCCCCcccCccceeEEEccCCccccCcCCHHHHHHHHHHHhhCCCEEEEEcCCH
Q 016228           95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGAMLVYTLADP  174 (393)
Q Consensus        95 ~~~~~IfiVSDsTGeTAe~l~~AaLaQF~~~~~~~~~~~~~~~~p~~~~~~~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~  174 (393)
                      ++.++||+||||||+|||++++|+|+|||++      ++++++|||      |+|.+++.++++++++++++|||||||+
T Consensus         2 ~~~~~i~~VSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~------v~~~~~~~~i~~~~~~~~~iV~~Tlv~~   69 (269)
T PRK05339          2 MMKRHVFLVSDSTGETAETVGRAALSQFPNV------EFEEHRYPF------VRTEEKADEVLEEINAERPIVFYTLVDP   69 (269)
T ss_pred             CCceEEEEEeCCHHHHHHHHHHHHHHhCCCC------CeeEEEeCC------cCCHHHHHHHHHHHHhcCCEEEEeCCCH
Confidence            5678999999999999999999999999974      578999999      9999999999999998899999999999


Q ss_pred             HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016228          175 SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD  254 (393)
Q Consensus       175 eLr~~l~~~~~~~gi~~vDll~p~i~~Le~~lG~~P~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~eAD  254 (393)
                      +||++|+++|+.+||+++|+|+|+++.|+++||++|.+    .||+.|+||++||+|||||||||+||||++|++|.+||
T Consensus        70 elr~~l~~~~~~~~i~~vdll~p~i~~le~~lg~~p~~----~pG~~~~ld~~Yf~RIeAiefal~hDDG~~~~~l~~AD  145 (269)
T PRK05339         70 ELREILEERCAEFGIPCIDILGPLIAPLEQELGLKPTP----EPGRTHGLDEEYFKRIEAIEFALAHDDGQDPRGLDEAD  145 (269)
T ss_pred             HHHHHHHHHHHHcCCCEEeccHHHHHHHHHHHCcCCCC----CCCcccCCcHHHHHHHHHHHHHHHcCCCCCcCCcccCC
Confidence            99999999999999999999999999999999999985    89999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC
Q 016228          255 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS  334 (393)
Q Consensus       255 IVLvGVSRTsKTPlSmYLA~~G~KVANvPLVp~v~lP~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YA  334 (393)
                      |||||||||||||||||||++|||||||||||+++||++||+++++|||||||||++|++||++|+++||+     |.||
T Consensus       146 IiLvGVSRtsKTPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl~~lg~-----s~Ya  220 (269)
T PRK05339        146 VILVGVSRTSKTPTSLYLANKGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERLPNLGL-----SRYA  220 (269)
T ss_pred             EEEECcCCCCCcHHHHHHHccCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHhcccCc-----CcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986     6899


Q ss_pred             CHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhhcc
Q 016228          335 EMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK  381 (393)
Q Consensus       335 s~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIEEtAa~Il~~~~~r~  381 (393)
                      |+++|++||+||++||+++ ||||||||+|||||||+.||++++.+.
T Consensus       221 ~~~~i~~El~~A~~l~~k~-~~pvIdvT~kSIEEtA~~Il~~~~~~~  266 (269)
T PRK05339        221 SLEQCREELAEAERLFRRE-GIPVIDVTNKSIEETAAKILEILGLRR  266 (269)
T ss_pred             CHHHHHHHHHHHHHHHHHc-CCCEEECCCCcHHHHHHHHHHHHHhhc
Confidence            9999999999999999997 999999999999999999999997654

>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases	Back alignment and domain information

>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK13947 shikimate kinase; Provisional	Back alignment and domain information

>PRK04220 2-phosphoglycerate kinase; Provisional	Back alignment and domain information

>PRK03839 putative kinase; Provisional	Back alignment and domain information

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK03731 aroL shikimate kinase II; Reviewed	Back alignment and domain information

>PRK05057 aroK shikimate kinase I; Reviewed	Back alignment and domain information

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional	Back alignment and domain information

>PRK04040 adenylate kinase; Provisional	Back alignment and domain information

>PRK14738 gmk guanylate kinase; Provisional	Back alignment and domain information

>PRK04182 cytidylate kinase; Provisional	Back alignment and domain information

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional	Back alignment and domain information

>PRK13808 adenylate kinase; Provisional	Back alignment and domain information

>TIGR02173 cyt_kin_arch cytidylate kinase, putative	Back alignment and domain information

>PRK13949 shikimate kinase; Provisional	Back alignment and domain information

>PRK00131 aroK shikimate kinase; Reviewed	Back alignment and domain information

>PRK14532 adenylate kinase; Provisional	Back alignment and domain information

>PRK13946 shikimate kinase; Provisional	Back alignment and domain information

>PRK02496 adk adenylate kinase; Provisional	Back alignment and domain information

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)	Back alignment and domain information

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family	Back alignment and domain information

>PRK12339 2-phosphoglycerate kinase; Provisional	Back alignment and domain information

>PLN02200 adenylate kinase family protein	Back alignment and domain information

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily	Back alignment and domain information

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed	Back alignment and domain information

>PRK13948 shikimate kinase; Provisional	Back alignment and domain information

>PLN02199 shikimate kinase	Back alignment and domain information

>PRK06762 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase	Back alignment and domain information

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A	Back alignment and domain information

>PRK08233 hypothetical protein; Provisional	Back alignment and domain information

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2	Back alignment and domain information

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed	Back alignment and domain information

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	Back alignment and domain information

>PRK10078 ribose 1,5-bisphosphokinase; Provisional	Back alignment and domain information

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	Back alignment and domain information

>PRK00023 cmk cytidylate kinase; Provisional	Back alignment and domain information

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional	Back alignment and domain information

>TIGR00017 cmk cytidylate kinase	Back alignment and domain information

>PRK14530 adenylate kinase; Provisional	Back alignment and domain information

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []	Back alignment and domain information

>PRK00625 shikimate kinase; Provisional	Back alignment and domain information

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants	Back alignment and domain information

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional	Back alignment and domain information

>PRK14528 adenylate kinase; Provisional	Back alignment and domain information

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins	Back alignment and domain information

>smart00072 GuKc Guanylate kinase homologues	Back alignment and domain information

>PRK12297 obgE GTPase CgtA; Reviewed	Back alignment and domain information

>PRK13975 thymidylate kinase; Provisional	Back alignment and domain information

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional	Back alignment and domain information

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14527 adenylate kinase; Provisional	Back alignment and domain information

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK12337 2-phosphoglycerate kinase; Provisional	Back alignment and domain information

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP	Back alignment and domain information

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional	Back alignment and domain information

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>TIGR02729 Obg_CgtA Obg family GTPase CgtA	Back alignment and domain information

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	Back alignment and domain information

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]	Back alignment and domain information

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed	Back alignment and domain information

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2	Back alignment and domain information

>PRK14737 gmk guanylate kinase; Provisional	Back alignment and domain information

>PLN02796 D-glycerate 3-kinase	Back alignment and domain information

>PRK12296 obgE GTPase CgtA; Reviewed	Back alignment and domain information

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family	Back alignment and domain information

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A	Back alignment and domain information

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB	Back alignment and domain information

>TIGR03263 guanyl_kin guanylate kinase	Back alignment and domain information

>PRK06217 hypothetical protein; Validated	Back alignment and domain information

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases	Back alignment and domain information

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)	Back alignment and domain information

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)	Back alignment and domain information

>PRK07261 topology modulation protein; Provisional	Back alignment and domain information

>PRK00300 gmk guanylate kinase; Provisional	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA	Back alignment and domain information

>TIGR01351 adk adenylate kinases	Back alignment and domain information

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	Back alignment and domain information

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type	Back alignment and domain information

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)	Back alignment and domain information

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2	Back alignment and domain information

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins	Back alignment and domain information

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli	Back alignment and domain information

>PLN02165 adenylate isopentenyltransferase	Back alignment and domain information

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK08356 hypothetical protein; Provisional	Back alignment and domain information

>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []	Back alignment and domain information

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A	Back alignment and domain information

>PRK00279 adk adenylate kinase; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		393
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 41/334 (12%), Positives = 92/334 (27%), Gaps = 110/334 (32%)

Query: 121 QFEHCLVDRNCAVNTHLFSGLQQFCQIDDVEQLMVIIKQAAKDGA--MLVYTLADPSMAE 178
            +E+CL+                   + +V+         A + +  +L+ T     + +
Sbjct: 242 PYENCLLV------------------LLNVQNAKAW---NAFNLSCKILLTT-RFKQVTD 279

Query: 179 --SAKKACELWGIPSTDVLGPITEA-----IASHLGVSPSGLPR-------------GAP 218
             SA        I        +T       +  +L   P  LPR                
Sbjct: 280 FLSAATTTH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 219 GRNFPLSEEYFRRI------EAIEFTIKQDDGALPQNLQKA----DIILSGVSRTGKTPL 268
            R+   + + ++ +        IE ++   +   P   +K      +            L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTIL-L 392

Query: 269 SIYLAQKGYKVANVPIVMGVEL-PKSLFQVDPEKVFGLTINPLVLQSIRKARA-----RS 322
           S+          +  +V+  +L   SL +  P++   ++I  + L+   K        RS
Sbjct: 393 SLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLENEYALHRS 448

Query: 323 L-------------GFRDEIRSNY---------SEMDYVREELEFAGRI-----FAQNPV 355
           +                      Y           +++      F   +     F +   
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDFRFLEQK- 506

Query: 356 WPVIEVTGKAIEETAAVV-----LRLYHDRKHKC 384
              I     A   + +++     L+ Y  + + C
Sbjct: 507 ---IRHDSTAWNASGSILNTLQQLKFY--KPYIC 535

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		393
3kb2_A		173	SPBC2 prophage-derived uncharacterized protein YOR	97.68
3trf_A		185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.08
3t61_A		202	Gluconokinase; PSI-biology, structural genomics, p	97.03
3ake_A		208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.98
4e22_A		252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.98
2h92_A		219	Cytidylate kinase; rossmann fold, transferase; HET	96.92
1via_A		175	Shikimate kinase; structural genomics, transferase	96.78
3lw7_A		179	Adenylate kinase related protein (ADKA-like); AMP,	96.77
3vaa_A		199	Shikimate kinase, SK; structural genomics, center	96.77
1tev_A		196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.61
3iij_A		180	Coilin-interacting nuclear ATPase protein; alpha a	96.43
2z0h_A		197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.43
1q3t_A		236	Cytidylate kinase; nucleotide monophosphate kinase	96.33
2jaq_A		205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.28
4eun_A		200	Thermoresistant glucokinase; putative sugar kinase	96.18
2c95_A		196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.17
3nwj_A		250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.14
1kag_A		173	SKI, shikimate kinase I; transferase, structural g	96.14
1knq_A		175	Gluconate kinase; ALFA/beta structure, transferase	96.07
1cke_A		227	CK, MSSA, protein (cytidine monophosphate kinase);	95.94
1qf9_A		194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.86
2cdn_A		201	Adenylate kinase; phosphoryl transfer, associative	95.83
1kht_A		192	Adenylate kinase; phosphotransferase, signaling pr	95.74
1zuh_A		168	Shikimate kinase; alpha-beta protein, transferase;	95.7
1ak2_A		233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.68
1y63_A		184	LMAJ004144AAA protein; structural genomics, protei	95.5
2bwj_A		199	Adenylate kinase 5; phosphoryl transfer reaction,	95.37
2iyv_A		184	Shikimate kinase, SK; transferase, aromatic amino	95.3
1ukz_A		203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.25
2vli_A		183	Antibiotic resistance protein; transferase, tunica	95.21
1vht_A		218	Dephospho-COA kinase; structural genomics, transfe	95.2
3cm0_A		186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.17
1e6c_A		173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.1
1jjv_A		206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.0
3fb4_A		216	Adenylate kinase; psychrophIle, phosphotransferase	94.96
1nn5_A		215	Similar to deoxythymidylate kinase (thymidylate K;	94.85
1nks_A		194	Adenylate kinase; thermophilic, transferase; HET:	94.83
3uie_A		200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.83
2if2_A		204	Dephospho-COA kinase; alpha-beta protein, structur	94.78
3dl0_A		216	Adenylate kinase; phosphotransferase, zinc coordin	94.58
3be4_A		217	Adenylate kinase; malaria, cryptosporidium parvum	94.57
3r20_A		233	Cytidylate kinase; structural genomics, seattle st	94.47
2pbr_A		195	DTMP kinase, thymidylate kinase; transferase, nucl	94.46
3tlx_A		243	Adenylate kinase 2; structural genomics, structura	94.4
2qt1_A		207	Nicotinamide riboside kinase 1; non-protein kinase	93.93
2f6r_A		281	COA synthase, bifunctional coenzyme A synthase; 18	93.88
1zak_A		222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.69
3tr0_A		205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.56
4eaq_A		229	DTMP kinase, thymidylate kinase; structural genomi	92.92
4ehx_A		315	Tetraacyldisaccharide 4'-kinase; membrane protein,	92.1
3a4m_A		260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	91.76
3ney_A		197	55 kDa erythrocyte membrane protein; structural ge	91.49
3hjn_A		197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	90.76
1ex7_A		186	Guanylate kinase; substrate-induced FIT, domain mo	88.22
3zvl_A		416	Bifunctional polynucleotide phosphatase/kinase; hy	88.14
3a00_A		186	Guanylate kinase, GMP kinase; domain movement, dim	87.81
1uj2_A		252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	87.24
3sr0_A		206	Adenylate kinase; phosphoryl transfer analogue, AL	87.07
2qmh_A		205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	86.78
1uf9_A		203	TT1252 protein; P-loop, nucleotide binding domain,	86.35
3fdi_A		201	Uncharacterized protein; cytidylate kinase like pr	85.3
2v54_A		204	DTMP kinase, thymidylate kinase; nucleotide biosyn	84.8
3tmk_A		216	Thymidylate kinase; phosphotransferase; HET: T5A;	84.71
3eph_A		409	TRNA isopentenyltransferase; transferase, alternat	83.31
2rhm_A		193	Putative kinase; P-loop containing nucleoside trip	82.97
1xjc_A		169	MOBB protein homolog; structural genomics, midwest	82.7
2pt5_A		168	Shikimate kinase, SK; aromatic amino acid biosynth	82.31
2ze6_A		253	Isopentenyl transferase; crown GALL tumor, cytokin	82.25
4tmk_A		213	Protein (thymidylate kinase); ATP:DTMP phosphotran	82.18
1qhx_A		178	CPT, protein (chloramphenicol phosphotransferase);	82.06
3lv8_A		236	DTMP kinase, thymidylate kinase; structural genomi	81.97
1ly1_A		181	Polynucleotide kinase; PNK, phosphatase, transfera	81.83
3hdt_A		223	Putative kinase; structura genomics, PSI-2, protei	80.8
3a8t_A		339	Adenylate isopentenyltransferase; rossmann fold pr	80.23

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*	Back alignment and structure

Probab=97.68  E-value=9.6e-05  Score=61.83  Aligned_cols=120  Identities=18%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             EEEEccCCCCCChhhHHhhh-cCceeeeccccCC-CC-----------CCc---cc----------cc------------
Q 016228          255 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMG-VE-----------LPK---SL----------FQ------------  296 (393)
Q Consensus       255 IVLvGVSRTsKTPlSmYLA~-~G~KVANvPLVp~-v~-----------lP~---~L----------~~------------  296 (393)
                      |+|.|.|+||||=++-.||+ .|+.+.+-+.... ..           +.+   .+          |.            
T Consensus         4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~   83 (173)
T 3kb2_A            4 IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTER   83 (173)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHHHHHHHHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHH
Confidence            79999999999999999995 4877665443110 00           000   00          00            


Q ss_pred             ---------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016228          297 ---------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE  367 (393)
Q Consensus       297 ---------i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kSIE  367 (393)
                               ..+..+|-|+.+++.+.+--..|    +-+   ...-...+++.+..+.-...+. . .+-+||.+++++|
T Consensus        84 ~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r----~r~---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~id~~~~~~~  154 (173)
T 3kb2_A           84 QLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR----GDE---YIEGKDIDSILELYREVMSNAG-L-HTYSWDTGQWSSD  154 (173)
T ss_dssp             HHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH----SCS---CCCHHHHHHHHHHHHHHHHTCS-S-CEEEEETTTSCHH
T ss_pred             HHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc----CCc---chhhhHHHHHHHHHHHHHhhcC-C-CEEEEECCCCCHH
Confidence                     13457899999999887633334    211   1111123334433333333333 2 5778999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 016228          368 ETAAVVLRLYHDRKHK  383 (393)
Q Consensus       368 EtAa~Il~~~~~r~~~  383 (393)
                      |++..|++.++...++
T Consensus       155 ev~~~I~~~~~~~~~~  170 (173)
T 3kb2_A          155 EIAKDIIFLVELEHHH  170 (173)
T ss_dssp             HHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhCCCcc
Confidence            9999999999876543

PyMOL of 3kb2

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}	Back alignment and structure

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}	Back alignment and structure

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*	Back alignment and structure

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}	Back alignment and structure

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}	Back alignment and structure

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2	Back alignment and structure

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A	Back alignment and structure

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1	Back alignment and structure

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A	Back alignment and structure

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1	Back alignment and structure

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*	Back alignment and structure

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}	Back alignment and structure

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A	Back alignment and structure

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}	Back alignment and structure

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2	Back alignment and structure

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*	Back alignment and structure

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*	Back alignment and structure

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*	Back alignment and structure

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A	Back alignment and structure

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A	Back alignment and structure

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*	Back alignment and structure

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*	Back alignment and structure

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1	Back alignment and structure

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}	Back alignment and structure

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*	Back alignment and structure

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*	Back alignment and structure

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}	Back alignment and structure

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A	Back alignment and structure

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}	Back alignment and structure

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*	Back alignment and structure

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1	Back alignment and structure

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}	Back alignment and structure

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*	Back alignment and structure

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1	Back alignment and structure

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*	Back alignment and structure

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}	Back alignment and structure

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*	Back alignment and structure

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}	Back alignment and structure

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*	Back alignment and structure

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}	Back alignment and structure

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}	Back alignment and structure

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*	Back alignment and structure

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}	Back alignment and structure

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1	Back alignment and structure

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}	Back alignment and structure

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A	Back alignment and structure

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A	Back alignment and structure

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*	Back alignment and structure

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0	Back alignment and structure

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}	Back alignment and structure

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A	Back alignment and structure

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*	Back alignment and structure

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*	Back alignment and structure

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*	Back alignment and structure

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*	Back alignment and structure

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1	Back alignment and structure

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}	Back alignment and structure

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*	Back alignment and structure

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*	Back alignment and structure

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*	Back alignment and structure

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}	Back alignment and structure

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10	Back alignment and structure

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}	Back alignment and structure

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A	Back alignment and structure

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*	Back alignment and structure

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*	Back alignment and structure

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*	Back alignment and structure

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1	Back alignment and structure

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}	Back alignment and structure

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		393
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.99
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.9
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.68
d1viaa_		161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.47
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.42
d2iyva1		165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.38
d1q3ta_		223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.24
d1nksa_		194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.23
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.18
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	97.08
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.06
d1ak2a1		190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.96
d2cdna1		181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.95
d1zaka1		189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.95
d1qf9a_		194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.69
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.67
d1teva_		194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.66
d1ukza_		196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.61
d1x6va3		195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.52
d1e4va1		179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.26
d1akya1		180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.93
d1zina1		182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.43
d1s3ga1		182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.24
d3adka_		194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.11
d2ak3a1		189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.11
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	95.06
d4tmka_		210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.89
d1ckea_		225	CMP kinase {Escherichia coli [TaxId: 562]}	94.85
d1tmka_		214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.48
d1nn5a_		209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.34
d1g41a_		443	HslU {Haemophilus influenzae [TaxId: 727]}	91.26
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	88.22
d1xjca_		165	Molybdopterin-guanine dinucleotide biosynthesis pr	88.17
d1bifa1		213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	86.68
d1s96a_		205	Guanylate kinase {Escherichia coli [TaxId: 562]}	86.61
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	86.23
d2cxxa1		184	GTP-binding protein engB {Pyrococcus horikoshii [T	86.21
d1p3da1		96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.76
d1gkya_		186	Guanylate kinase {Baker's yeast (Saccharomyces cer	82.95
d1xp8a1		268	RecA protein, ATPase-domain {Deinococcus radiodura	82.81
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	82.6
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	82.01
d2f7sa1		186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	81.76
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	81.65
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	81.59
d1gsia_		208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	81.57
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	81.56
d1lvga_		190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	81.47

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.3e-06  Score=69.13  Aligned_cols=118  Identities=11%  Similarity=0.063  Sum_probs=70.2

Q ss_pred             cEEEEccCCCCCChhhHHhh-hcCceeeeccccC---------------------------------------CCCCC--
Q 016228          254 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM---------------------------------------GVELP--  291 (393)
Q Consensus       254 DIVLvGVSRTsKTPlSmYLA-~~G~KVANvPLVp---------------------------------------~v~lP--  291 (393)
                      -|||+|+|+||||=++-.|| +.|+.+-+.-..-                                       .....  
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSV   83 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTTGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccchhh
Confidence            49999999999999999999 5688765532221                                       00000  


Q ss_pred             ------ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCcc
Q 016228          292 ------KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKA  365 (393)
Q Consensus       292 ------~~L~~i~~~KI~GLTIdP~rL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~g~pVIDVT~kS  365 (393)
                            ..+  ....+.+-+..++..|..-..+|.....    ....-.+.+.+.+....-..+|.+. .--+||+++++
T Consensus        84 ~~~~~~~~l--~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~y~~~-~d~~Idt~~~s  156 (169)
T d1kaga_          84 KSRETRNRL--SARGVVVYLETTIEKQLARTQRDKKRPL----LHVETPPREVLEALANERNPLYEEI-ADVTIRTDDQS  156 (169)
T ss_dssp             GSHHHHHHH--HHHSEEEECCCCHHHHHSCC------CC----SSSSCCCHHHHHHHHHHHHHHHHHH-CSEEC-----C
T ss_pred             hhhhhhHHh--hhcceeeeccCcHHHhhhHhhhccccch----hcccccchhHHHHHHHHhhhhhhcc-CCEEEECCCCC
Confidence                  011  1123455666666665542222221111    2334556777777777888888874 45789999999


Q ss_pred             HHHHHHHHHHHHh
Q 016228          366 IEETAAVVLRLYH  378 (393)
Q Consensus       366 IEEtAa~Il~~~~  378 (393)
                      +||++..|++.|+
T Consensus       157 ~ee~v~~Ii~~le  169 (169)
T d1kaga_         157 AKVVANQIIHMLE  169 (169)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999873

PyMOL of d1kaga_

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}	Back information, alignment and structure

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure