Citrus Sinensis ID: 016230

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MALKLNPTTFSFPSSSSSIRKHRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREIIV
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEEcccccc
ccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHcHHHcccHHHcccHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHccccEEEcHHHcccEEEc
malklnpttfsfpsssssirkhrcsrvfmastlppaitkevgnlkkpycpprevhvqvthsmpqQKMEIFKSLEGWAEENILVHLkpvekcwqpmdylpepesegFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLdgvrdetgasltSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIgsgmdpktennpylgFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKkismpahlmydgrddnlFEHFSTVAQRLGVYTAKDYADILEFLVGRWNvekltglsgegrkaqdfvcglppRIRRLEERAQGrakqasavpfswvfgreiiv
malklnpttfsfpsssssirkhRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAwtaeenrhgdLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEklfeidpdGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLtglsgegrkaqdfvcgLPPRIRRLEEraqgrakqasavpfswvfgreiiv
MALKLNpttfsfpsssssIRKHRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREIIV
*************************RVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTH****QKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIR**************AVPFSWVFGREI**
**********************************************************THSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIR*****************FSWVFGREIIV
*********************HRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEE**********AVPFSWVFGREIIV
******P*TFSF***********************************************HSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREIIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALKLNPTTFSFPSSSSSIRKHRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREIIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q41319393 Acyl-[acyl-carrier-protei N/A no 0.989 0.989 0.834 0.0
P22337396 Acyl-[acyl-carrier-protei N/A no 0.982 0.974 0.817 0.0
Q42807411 Acyl-[acyl-carrier-protei yes no 0.979 0.936 0.821 0.0
P22243396 Acyl-[acyl-carrier-protei N/A no 0.982 0.974 0.807 0.0
Q43593390 Acyl-[acyl-carrier-protei N/A no 0.982 0.989 0.826 0.0
Q9M879396 Acyl-[acyl-carrier-protei yes no 0.989 0.982 0.818 0.0
O24428393 Acyl-[acyl-carrier-protei N/A no 0.984 0.984 0.802 0.0
Q01753398 Acyl-[acyl-carrier-protei N/A no 1.0 0.987 0.786 0.0
P32061396 Acyl-[acyl-carrier-protei N/A no 0.992 0.984 0.784 0.0
P46253393 Acyl-[acyl-carrier-protei N/A no 0.977 0.977 0.776 0.0
>sp|Q41319|STAD_SOLCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2 Back     alignment and function desciption
 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/393 (83%), Positives = 356/393 (90%), Gaps = 4/393 (1%)

Query: 1   MALKLNPTTF-SFPSSSSSIRKHRCSRVFMASTL-PPAITKEVGNLKKPYCPPREVHVQV 58
           MAL  N  TF S  ++       R  RVFMASTL PP++  E GN+KKP+ PPREVHVQV
Sbjct: 1   MALNFNSPTFQSIKTTRRPCSPLRSPRVFMASTLRPPSV--EDGNVKKPFSPPREVHVQV 58

Query: 59  THSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCK 118
           THSMP +K EIF SL GWA+ NILVHLKPVEKCWQ  D+LP+P SEGF +QVKELRERCK
Sbjct: 59  THSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPASEGFEDQVKELRERCK 118

Query: 119 EIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGD 178
           EIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLT WAIWTRAWTAEENRHGD
Sbjct: 119 EIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGD 178

Query: 179 LLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR 238
           LLNKYLYLSGRVDM+QIEKTIQYLIGSGMDP+TENNPYLGFIYTSFQERATFISHGNTAR
Sbjct: 179 LLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTAR 238

Query: 239 HAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAH 298
           HAKE+GD+KLAQ+CGIIA+DEKRHETAYTKIVEKLFE+DPDGTV+A+ADMM+KKISMPAH
Sbjct: 239 HAKEHGDMKLAQVCGIIAADEKRHETAYTKIVEKLFEVDPDGTVLAVADMMRKKISMPAH 298

Query: 299 LMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVC 358
           LMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRW +EKLTGLSGEG KA+D+VC
Sbjct: 299 LMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWEIEKLTGLSGEGHKARDYVC 358

Query: 359 GLPPRIRRLEERAQGRAKQASAVPFSWVFGREI 391
           GL PRIR+LEERAQ RAKQ + VPFSWVFG++I
Sbjct: 359 GLAPRIRKLEERAQARAKQKAPVPFSWVFGKDI 391
Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.
Solanum commersonii (taxid: 4109)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 2
>sp|P22337|STAD_RICCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|Q42807|STAD_SOYBN Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1 Back     alignment and function description
>sp|P22243|STAD_CARTI Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1 Back     alignment and function description
>sp|Q43593|STAD_OLEEU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1 Back     alignment and function description
>sp|Q9M879|STAD5_ARATH Acyl-[acyl-carrier-protein] desaturase 5, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES5 PE=1 SV=1 Back     alignment and function description
>sp|O24428|STAD_ELAGV Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2 Back     alignment and function description
>sp|Q01753|STAD_SIMCH Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1 Back     alignment and function description
>sp|P32061|STAD_CUCSA Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1 Back     alignment and function description
>sp|P46253|STAD_SOLTU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
TAIR|locus:2076969396 AT3G02630 [Arabidopsis thalian 0.944 0.936 0.849 1e-171
TAIR|locus:2043899401 SSI2 "AT2G43710" [Arabidopsis 0.923 0.905 0.813 3e-165
TAIR|locus:2181437394 AT5G16240 [Arabidopsis thalian 0.923 0.921 0.791 2.5e-159
TAIR|locus:2181427401 AT5G16230 [Arabidopsis thalian 0.923 0.905 0.708 8.9e-141
TAIR|locus:2029142391 FTM1 "FLORAL TRANSITION AT THE 0.921 0.925 0.680 1.3e-132
UNIPROTKB|E3PZS2376 SAD2 "Acyl-[acyl-carrier-prote 0.842 0.880 0.522 9.4e-98
UNIPROTKB|Q50824338 desA1 "Putative acyl-[acyl-car 0.689 0.801 0.278 3.8e-23
UNIPROTKB|O53442275 desA2 "Putative acyl-[acyl-car 0.302 0.432 0.299 1.9e-06
TAIR|locus:2076969 AT3G02630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1669 (592.6 bits), Expect = 1.0e-171, P = 1.0e-171
 Identities = 317/373 (84%), Positives = 340/373 (91%)

Query:    20 RKHRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEE 79
             R  R SRV MAST+  A T EV N +K Y PPREVHVQV HSMP QK+EIFKSLEGWA+E
Sbjct:    23 RGSRSSRVSMASTIRSATT-EVTNGRKLYIPPREVHVQVKHSMPPQKLEIFKSLEGWADE 81

Query:    80 NILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALP 139
              +L +LKPVEK WQP D+LPEPESEGFY+QVKELRERCKE+PDDYFVVLVGDMITEEALP
Sbjct:    82 TLLTYLKPVEKSWQPTDFLPEPESEGFYDQVKELRERCKELPDDYFVVLVGDMITEEALP 141

Query:   140 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTI 199
             TYQTMLNTLDGVRDETGAS T WAIWTRAWTAEENRHGDLLNKYLYLSGRVDM+QIEKTI
Sbjct:   142 TYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTI 201

Query:   200 QYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDE 259
             QYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR AK+ GDLKLAQICG IA+DE
Sbjct:   202 QYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKDRGDLKLAQICGTIAADE 261

Query:   260 KRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRL 319
             +RHETAYTKIVEKLFEIDPDGT++ LADMMKKKISMPAHLMYDG+DDNLFEHFSTVAQRL
Sbjct:   262 RRHETAYTKIVEKLFEIDPDGTILGLADMMKKKISMPAHLMYDGQDDNLFEHFSTVAQRL 321

Query:   320 GVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQAS 379
             GVYTAKDYADILEFLV RWNVE LT LS EG +AQDFVCGLP RIR++EERAQGRAK+A+
Sbjct:   322 GVYTAKDYADILEFLVERWNVETLTDLSSEGHRAQDFVCGLPARIRKIEERAQGRAKEAA 381

Query:   380 A-VPFSWVFGREI 391
               +PFSW+FGR I
Sbjct:   382 KNIPFSWIFGRNI 394
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006633 "fatty acid biosynthetic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0045300 "acyl-[acyl-carrier-protein
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0007020 "microtubule nucleation" evidence=RCA
TAIR|locus:2043899 SSI2 "AT2G43710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181437 AT5G16240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181427 AT5G16230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029142 FTM1 "FLORAL TRANSITION AT THE MERISTEM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E3PZS2 SAD2 "Acyl-[acyl-carrier-protein] desaturase 2, chloroplastic" [Ophrys sphegodes (taxid:145953)] Back     alignment and assigned GO terms
UNIPROTKB|Q50824 desA1 "Putative acyl-[acyl-carrier-protein] desaturase desA1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|O53442 desA2 "Putative acyl-[acyl-carrier-protein] desaturase desA2" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2YS76STAD7_ORYSI1, ., 1, 4, ., 1, 9, ., 20.54670.84980.8267N/Ano
P29108STAD_BRANA1, ., 1, 4, ., 1, 9, ., 20.78280.99490.9824N/Ano
Q96456STAD_HELAN1, ., 1, 4, ., 1, 9, ., 20.77440.98210.9747N/Ano
Q01771STADS_BRANA1, ., 1, 4, ., 1, 9, ., 20.7550.98720.9724N/Ano
P22337STAD_RICCO1, ., 1, 4, ., 1, 9, ., 20.81700.98210.9747N/Ano
Q01753STAD_SIMCH1, ., 1, 4, ., 1, 9, ., 20.78641.00.9874N/Ano
P46253STAD_SOLTU1, ., 1, 4, ., 1, 9, ., 20.77630.97700.9770N/Ano
A2WYF4STAD2_ORYSI1, ., 1, 4, ., 1, 9, ., 20.83420.90330.8964N/Ano
E3PZS3STAD2_OPHAA1, ., 1, 4, ., 1, 9, ., 20.54160.82180.8590N/Ano
Q42770STAD_GOSHI1, ., 1, 4, ., 1, 9, ., 20.79180.93630.9269N/Ano
Q8S059STAD2_ORYSJ1, ., 1, 4, ., 1, 9, ., 20.83420.90330.8964yesno
E3PZR9STAD3_OPHSP1, ., 1, 4, ., 1, 9, ., 20.76030.97960.9673N/Ano
O22832STAD7_ARATH1, ., 1, 4, ., 1, 9, ., 20.77190.99490.9750nono
Q42807STAD_SOYBN1, ., 1, 4, ., 1, 9, ., 20.82180.97960.9367yesno
B8AIC3STAD3_ORYSI1, ., 1, 4, ., 1, 9, ., 20.66570.92110.9004N/Ano
Q41319STAD_SOLCO1, ., 1, 4, ., 1, 9, ., 20.83460.98980.9898N/Ano
A2XSL4STAD5_ORYSI1, ., 1, 4, ., 1, 9, ., 20.81360.91600.9207N/Ano
P28645STAD_SPIOL1, ., 1, 4, ., 1, 9, ., 20.80350.99490.9799N/Ano
Q40731STAD5_ORYSJ1, ., 1, 4, ., 1, 9, ., 20.78590.95160.9589nono
B8A7A3STAD1_ORYSI1, ., 1, 4, ., 1, 9, ., 20.70290.85750.8845N/Ano
P22243STAD_CARTI1, ., 1, 4, ., 1, 9, ., 20.80700.98210.9747N/Ano
Q9LF04STAD1_ARATH1, ., 1, 4, ., 1, 9, ., 20.81890.88290.8807nono
O24428STAD_ELAGV1, ., 1, 4, ., 1, 9, ., 20.80200.98470.9847N/Ano
Q9M879STAD5_ARATH1, ., 1, 4, ., 1, 9, ., 20.81810.98980.9823yesno
E3PZS1STAD1_OPHSP1, ., 1, 4, ., 1, 9, ., 20.50130.92360.9603N/Ano
E3PZS0STAD3_OPHAA1, ., 1, 4, ., 1, 9, ., 20.76030.97960.9673N/Ano
E3PZS2STAD2_OPHSP1, ., 1, 4, ., 1, 9, ., 20.53570.82180.8590N/Ano
P32061STAD_CUCSA1, ., 1, 4, ., 1, 9, ., 20.78480.99230.9848N/Ano
P32063STAD_CORSA1, ., 1, 4, ., 1, 9, ., 20.73390.82950.8467N/Ano
P32062STAD_LINUS1, ., 1, 4, ., 1, 9, ., 20.75620.99490.9873N/Ano
Q43593STAD_OLEEU1, ., 1, 4, ., 1, 9, ., 20.82690.98210.9897N/Ano
Q8LJJ9STAD1_ORYSJ1, ., 1, 4, ., 1, 9, ., 20.70290.85750.8845nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.190.998
4th Layer1.14.19.20.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
PLN00179390 PLN00179, PLN00179, acyl- [acyl-carrier protein] d 0.0
pfam03405330 pfam03405, FA_desaturase_2, Fatty acid desaturase 0.0
cd01050297 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferr 0.0
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 2e-07
>gnl|CDD|215091 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase Back     alignment and domain information 
 Score =  793 bits (2051), Expect = 0.0
 Identities = 308/393 (78%), Positives = 336/393 (85%), Gaps = 5/393 (1%)

Query: 3   LKLNPTTFSFPSSSSSIRKHRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSM 62
           LKLNP     PS   + R          S+    +   V   KKP+ PPREVHVQVTHSM
Sbjct: 1   LKLNPLAA-QPSPPPAARLRPRRS--TRSSSSSVVAARVEAAKKPFAPPREVHVQVTHSM 57

Query: 63  PQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPD 122
           P +K+EIFKSLEGWAEEN+L  LKPVEK WQP D+LP+P SEGFY+QVKELRER  E+PD
Sbjct: 58  PPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPASEGFYDQVKELRERAAELPD 117

Query: 123 DYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNK 182
           DYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS T WA WTRAWTAEENRHGDLLNK
Sbjct: 118 DYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNK 177

Query: 183 YLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKE 242
           YLYLSGRVDM+QIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTAR AKE
Sbjct: 178 YLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKE 237

Query: 243 YGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISMPAHLMYD 302
           +GD KLA+ICG IA+DEKRHETAYT+IVEKLFEIDPDG V+A ADMM+KKI+MPAHLMYD
Sbjct: 238 HGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLAFADMMRKKITMPAHLMYD 297

Query: 303 GRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPP 362
           GRDDNLF+HFS VAQRLGVYTAKDYADILE LV RW VE+LTGLSGEGR+AQD+VCGLPP
Sbjct: 298 GRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPP 357

Query: 363 RIRRLEERAQGRAKQASA--VPFSWVFGREIIV 393
           RIRRLEERAQ RAK+A    +PFSW+F RE+ +
Sbjct: 358 RIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL 390

Length = 390
>gnl|CDD|217538 pfam03405, FA_desaturase_2, Fatty acid desaturase Back     alignment and domain information
>gnl|CDD|153109 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
PLN00179390 acyl- [acyl-carrier protein] desaturase 100.0
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 100.0
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.88
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 97.74
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 97.3
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 97.17
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 97.15
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 96.82
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 96.78
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 96.78
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 96.54
cd07908154 Mn_catalase_like Manganese catalase-like protein, 96.52
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 96.49
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 96.44
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 96.33
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 96.29
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 96.1
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 96.07
PRK10635158 bacterioferritin; Provisional 96.0
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 95.67
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 95.66
COG1633176 Uncharacterized conserved protein [Function unknow 95.31
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 95.27
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 95.2
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 95.05
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 94.92
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 94.68
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 94.49
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 94.19
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 93.9
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 93.48
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 93.15
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 93.14
PF13668137 Ferritin_2: Ferritin-like domain 92.92
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 92.73
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 92.6
PRK10304165 ferritin; Provisional 92.23
PLN02492324 ribonucleoside-diphosphate reductase 92.04
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 91.52
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 90.37
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 90.17
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 90.12
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 88.48
COG1592166 Rubrerythrin [Energy production and conversion] 88.04
cd07908154 Mn_catalase_like Manganese catalase-like protein, 87.13
cd07910180 MiaE MiaE tRNA-modifying nonheme diiron monooxygen 86.76
COG1633176 Uncharacterized conserved protein [Function unknow 86.16
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 84.52
cd01043139 DPS DPS protein, ferritin-like diiron-binding doma 84.3
cd00904160 Ferritin Ferritin iron storage proteins. Ferritins 83.1
PRK13456186 DNA protection protein DPS; Provisional 82.09
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 81.73
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 81.05
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 81.0
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 80.76
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 80.28
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 80.09
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information 
Probab=100.00  E-value=7.6e-138  Score=1027.83  Aligned_cols=353  Identities=85%  Similarity=1.355  Sum_probs=346.3

Q ss_pred             ccCCCCCCCCCccccccccCCCCchhHHHHHHhHHHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCC
Q 016230           41 VGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEI  120 (393)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~~Le~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~L  120 (393)
                      ....++++.+|.+++.|++|||||+|+|||++||+||++||++||||+|++|||||||||++|+||+++|++||+++++|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~~~~~F~~~v~~lr~~~~~L  115 (390)
T PLN00179         36 VEAAKKPFAPPREVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPASEGFYDQVKELRERAAEL  115 (390)
T ss_pred             hhhccccCCCchhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCCccCChHHHHhhhhHhhcCC
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHH
Q 016230          121 PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQ  200 (393)
Q Consensus       121 pdd~~v~Lv~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~  200 (393)
                      ||++++||||||||||||||||++||++||++|+||+++++|++|+++||||||||||+||+||||||+|||+++|+++|
T Consensus       116 pd~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q  195 (390)
T PLN00179        116 PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ  195 (390)
T ss_pred             ChhhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016230          201 YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDG  280 (393)
Q Consensus       201 ~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~  280 (393)
                      |+|++||+|+++++||++|+||||||+||+|||+||||+|+++|||+|++||++||+||+||+.||+++|+++||+|||+
T Consensus       196 ~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~  275 (390)
T PLN00179        196 YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG  275 (390)
T ss_pred             HHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcccCCCCCccchhhHHHHHHHHhcCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcC
Q 016230          281 TVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGL  360 (393)
Q Consensus       281 tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~savaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l  360 (393)
                      ||.||++||+|||+||||+|+||+|++||++|++++||+||||+.||.|||++||++|+|++|+|||+||+|||||||+|
T Consensus       276 tm~Aiadmm~~ki~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l  355 (390)
T PLN00179        276 AVLAFADMMRKKITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGL  355 (390)
T ss_pred             HHHHHHHHHHhcCCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHh
Confidence            99999999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhchhhcC--CCcCceeecCCcccC
Q 016230          361 PPRIRRLEERAQGRAKQA--SAVPFSWVFGREIIV  393 (393)
Q Consensus       361 ~~r~~r~~er~~~~~~~~--~~~~f~wi~~~~~~~  393 (393)
                      |+||+||+||++.|+|+.  ..++|||||+|+|.|
T Consensus       356 ~~rirr~~era~~~~~~~~~~~~~fsWi~~r~v~~  390 (390)
T PLN00179        356 PPRIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL  390 (390)
T ss_pred             HHHHHHHHHHHhhHHhccCCCCCceeeecCCccCC
Confidence            999999999999999875  378999999999975

>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00904 Ferritin Ferritin iron storage proteins Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
1oq4_A363 The Crystal Structure Of The Complex Between Stearo 0.0
2j2f_A363 The T199d Mutant Of Stearoyl Acyl Carrier Protein D 0.0
1afr_A345 Stearoyl-Acyl Carrier Protein Desaturase From Casto 0.0
2uw1_A338 Ivy Desaturase Structure Length = 338 1e-160
2uw1_B338 Ivy Desaturase Structure Length = 338 1e-159
1za0_A275 X-Ray Structure Of Putative Acyl-Acp Desaturase Des 4e-04
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Azide. Length = 363 Back     alignment and structure 
Iteration: 1

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/362 (86%), Positives = 339/362 (93%), Gaps = 1/362 (0%)
Query: 30  ASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVE 89
           ASTL    +KEV NLKKP+ PPREVHVQVTHSMP QK+EIFKSL+ WAEENILVHLKPVE
Sbjct: 1   ASTLKSG-SKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVE 59
Query: 90  KCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD 149
           KCWQP D+LP+P S+GF EQV+ELRER KEIPDDYFVVLVGDMITEEALPTYQTMLNTLD
Sbjct: 60  KCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD 119
Query: 150 GVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDP 209
           GVRDETGAS TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM+QIEKTIQYLIGSGMDP
Sbjct: 120 GVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDP 179
Query: 210 KTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKI 269
           +TEN+PYLGFIYTSFQERATFISHGNTAR AKE+GD+KLAQICG IA+DEKRHETAYTKI
Sbjct: 180 RTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKI 239
Query: 270 VEKLFEIDPDGTVMALADMMKKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYAD 329
           VEKLFEIDPDGTV+A ADMM+KKISMPAHLMYDGRDDNLF+HFS VAQRLGVYTAKDYAD
Sbjct: 240 VEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYAD 299
Query: 330 ILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGR 389
           ILEFLVGRW V+KLTGLS EG+KAQD+VC LPPRIRRLEERAQGRAK+A  +PFSW+F R
Sbjct: 300 ILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDR 359
Query: 390 EI 391
           ++
Sbjct: 360 QV 361
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) Length = 363 Back     alignment and structure
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds Length = 345 Back     alignment and structure
>pdb|2UW1|A Chain A, Ivy Desaturase Structure Length = 338 Back     alignment and structure
>pdb|2UW1|B Chain B, Ivy Desaturase Structure Length = 338 Back     alignment and structure
>pdb|1ZA0|A Chain A, X-Ray Structure Of Putative Acyl-Acp Desaturase Desa2 From Mycobacterium Tuberculosis H37rv Length = 275 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 1e-175
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 1e-115
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Length = 338 Back     alignment and structure
 Score =  490 bits (1261), Expect = e-175
 Identities = 261/338 (77%), Positives = 299/338 (88%)

Query: 56  VQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRE 115
           +QVTHSMP QK+EIFKSL+ WA  N+L+HLK VEK WQP DYLP+P S+GF EQV+ELRE
Sbjct: 1   MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRE 60

Query: 116 RCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENR 175
           R KEIPDDYFVVLVGDMITEEALPTY +MLN  DG++DETGA  ++WA+WTRAWTAEENR
Sbjct: 61  RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120

Query: 176 HGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGN 235
           HGDLLNKYLYLSGRVDM++IEKTIQYLIGSGMD K+EN+PYLGFIYTSFQERATFISH N
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHAN 180

Query: 236 TARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISM 295
           TA+ A+ YGD KLA ICG IASDEKRH TAYTKIVEKL EIDPD TV+A ADMM+KKI+M
Sbjct: 181 TAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 240

Query: 296 PAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQD 355
           PAHLMYDG D+ LF+HF+ VAQRLGVY+A DY DILEFLV +WNVE+LTGLS EGRKAQ+
Sbjct: 241 PAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQE 300

Query: 356 FVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREIIV 393
           +VC L P+IRRLEERAQGRAK+A  +PFSW+F R++ +
Sbjct: 301 YVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 338
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Length = 275 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 100.0
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 100.0
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 97.32
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 97.12
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 97.1
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 97.07
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 97.06
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 97.05
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 97.01
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 97.01
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 96.99
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 96.99
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 96.93
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 96.93
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 96.84
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.8
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 96.7
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 96.66
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 96.59
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 96.57
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 96.5
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 96.47
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 96.43
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 96.43
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 96.42
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 96.42
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 96.36
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 96.36
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 96.27
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 96.23
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 96.09
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 96.01
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 95.87
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 95.84
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 95.8
3qz3_A184 Ferritin; structural genomics, the center for stru 95.79
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 95.62
2fzf_A175 Hypothetical protein; structural genomics, southea 95.61
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 95.55
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 95.5
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 95.49
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 95.42
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 95.42
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 95.41
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 95.36
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 95.33
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 95.23
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 94.63
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 94.56
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 94.37
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 94.29
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 94.21
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 93.93
1n1q_A149 DPS protein; four-helix bundle, unknown function; 93.9
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 93.8
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 93.73
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 93.62
2vxx_A192 Starvation induced DNA binding protein; stress res 93.6
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 93.53
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 93.3
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 92.84
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 92.74
2c41_A158 DPS family DNA-binding stress response protein; ir 92.58
2fzf_A175 Hypothetical protein; structural genomics, southea 92.44
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 92.26
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 92.25
2d5k_A156 DPS, DPS family protein; four helix bundle, metal 91.35
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 91.24
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 90.66
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 89.24
3k6c_A95 Uncharacterized protein NE0167; structural genomic 87.84
2clb_A188 DPS-like protein; DI-iron carboxylate, hypothetica 87.45
1tjo_A182 Iron-rich DPSA-homolog protein; ferritin, low-iron 86.95
2itb_A206 TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative 86.83
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 86.03
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 85.14
1zpy_A95 Hypothetical protein NE0167; structural genomics, 85.0
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 83.11
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 82.48
2e0z_A 345 Virus-like particle; bacteriophage, HK97; 3.60A {P 82.42
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 81.75
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
Probab=100.00  E-value=4.3e-128  Score=952.92  Aligned_cols=338  Identities=77%  Similarity=1.262  Sum_probs=323.9

Q ss_pred             ccccCCCCchhHHHHHHhHHHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 016230           56 VQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITE  135 (393)
Q Consensus        56 ~~~~~~~~~~~~ev~~~Le~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv~~miTE  135 (393)
                      .|++|||+++|+|||++||+||++||++||||+++||||||||||++|+||+++|++|||++++|||++++||++|||||
T Consensus         1 ~~~~~~~~~~~~e~~~~Le~~~~~~~~~hL~p~~~~Wqp~D~lPw~~~~~F~~~~~~~~~~~~~l~d~~~v~lv~~~iTE   80 (338)
T 2uw1_A            1 MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITE   80 (338)
T ss_dssp             -----------CHHHHHTHHHHHHHTGGGSCCGGGCCCGGGGSCCTTSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCchhcCCCccccchhhhcccccHhhccCCHHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCCCCCCCc
Q 016230          136 EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNP  215 (393)
Q Consensus       136 d~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~~~~~~p  215 (393)
                      ||||+||++||++||++|++|+++++|++|+++|||||||||++||+|||+||+|||+++|++++++|++||+++++++|
T Consensus        81 d~LPtY~~~L~~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE~~~~~~i~~Gfd~~~~~~p  160 (338)
T 2uw1_A           81 EALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSP  160 (338)
T ss_dssp             HTHHHHHHHHTTSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHCCCCCCTTCH
T ss_pred             hcchHHHHHHHHHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             hhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhccCC
Q 016230          216 YLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMMKKKISM  295 (393)
Q Consensus       216 ~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~M  295 (393)
                      |++|+|+||||+||++||+|||++|+++|||||++||++||+||+||++||+++|+++|++||+++|.||++||+|+|+|
T Consensus       161 ~~~~vy~sfQE~AT~vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dpd~~~~Aia~vm~~~~~M  240 (338)
T 2uw1_A          161 YLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM  240 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHhcCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             CcccCCCCCccchhhHHHHHHHHhcCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHHHHhchh
Q 016230          296 PAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEERAQGRA  375 (393)
Q Consensus       296 P~~~m~dg~~~~lf~~~savaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~  375 (393)
                      |||+|+||+|+++|++|+++|||+||||+.||++|+++||++|+|++++|||+||++||||||+||+|++||+||++.|+
T Consensus       241 Pa~~m~dg~~~~~f~~~s~~a~r~GvYt~~dy~dil~~l~~~W~i~~~~gl~~eg~~ard~l~~l~~r~~r~~er~~~~~  320 (338)
T 2uw1_A          241 PAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRA  320 (338)
T ss_dssp             TTTTCCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHTTGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccCcCCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCcccccCCCHHHHHHHHHHHcchHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCceeecCCcccC
Q 016230          376 KQASAVPFSWVFGREIIV  393 (393)
Q Consensus       376 ~~~~~~~f~wi~~~~~~~  393 (393)
                      ||.+.++|||||+|+|.|
T Consensus       321 ~~~~~~~f~wi~~~~~~~  338 (338)
T 2uw1_A          321 KEAPTMPFSWIFDRQVKL  338 (338)
T ss_dssp             CCCCEEEEGGGTTEEEEC
T ss_pred             hcCCCCCeeEeecCcccC
Confidence            988889999999999975
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp} Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus} Back     alignment and structure
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A Back     alignment and structure
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7 Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d1afra_345 a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protei 0.0
d1za0a1267 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier pro 1e-113
d1lkoa1146 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain 0.003
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 345 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  571 bits (1473), Expect = 0.0
 Identities = 302/344 (87%), Positives = 326/344 (94%)

Query: 50  PPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQ 109
           PPREVHVQVTHSMP QK+EIFKSL+ WAEENILVHLKPVEKCWQP D+LP+P S+GF EQ
Sbjct: 2   PPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQ 61

Query: 110 VKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAW 169
           V+ELRER KEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS TSWAIWTRAW
Sbjct: 62  VRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAW 121

Query: 170 TAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 229
           TAEENRHGDLLNKYLYLSGRVDM+QIEKTIQYLIGSGMDP+TEN+PYLGFIYTSFQERAT
Sbjct: 122 TAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERAT 181

Query: 230 FISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMM 289
           FISHGNTAR AKE+GD+KLAQICG IA+DEKRHETAYTKIVEKLFEIDPDGTV+A ADMM
Sbjct: 182 FISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMM 241

Query: 290 KKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGE 349
           +KKISMPAHLMYDGRDDNLF+HFS VAQRLGVYTAKDYADILEFLVGRW V+KLTGLS E
Sbjct: 242 RKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAE 301

Query: 350 GRKAQDFVCGLPPRIRRLEERAQGRAKQASAVPFSWVFGREIIV 393
           G+KAQD+VC LPPRIRRLEERAQGRAK+A  +PFSW+F R++ +
Sbjct: 302 GQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 345
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Length = 146 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 100.0
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 100.0
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 97.61
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.58
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 97.44
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 97.29
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 97.22
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 97.13
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 97.08
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 96.92
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 96.87
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 96.78
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 96.73
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 96.62
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 96.46
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 96.45
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 96.41
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 96.4
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 96.39
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 96.39
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 96.35
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 96.28
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 96.04
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 96.01
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 95.86
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 95.75
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 95.55
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 95.43
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 95.16
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 94.29
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 94.14
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 93.4
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 92.89
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 90.61
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 90.46
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 87.81
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 86.59
d2cwla1299 Manganese catalase (T-catalase) {Thermus thermophi 83.64
d1umna_151 Dodecameric ferritin homolog {Streptococcus suis [ 82.54
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=5e-130  Score=964.52  Aligned_cols=344  Identities=88%  Similarity=1.400  Sum_probs=340.0

Q ss_pred             CCccccccccCCCCchhHHHHHHhHHHHHHHhHhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhcCCChhHHHHHH
Q 016230           50 PPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLV  129 (393)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~ev~~~Le~~v~~~~~~hl~~ve~~WqP~D~lPw~~~~~F~~~~~~lr~~~~~Lpdd~~v~Lv  129 (393)
                      ||++++.|++|||||+|+|||++||+||++||++||||++++|||||||||++|+||++++++||+++++|||++++||+
T Consensus         2 ~~~~~~~~~~~~~~p~~~ev~~~Le~~ve~~~~~~L~~v~~~WqPhD~lP~~~~~~F~~~~~e~~~~a~~lpd~~~v~lv   81 (345)
T d1afra_           2 PPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLV   81 (345)
T ss_dssp             CCCCCSCCCCCCSCTTTHHHHHHTHHHHHHHTGGGSCCGGGSCCGGGGSCCTTSTTHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CcchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcccCCCCccCCcchhccccchhhccCCHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchhHHHHhhhhcCCcccCCCCchhHhHHhhhchhhhhhhhHHHHhHHhHcCCCChHhhHHHHHHHhhcCCCC
Q 016230          130 GDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDP  209 (393)
Q Consensus       130 ~~miTEd~LPtY~~~L~~~fgv~d~~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~t~~~li~~G~d~  209 (393)
                      +||||||||||||++||++||++|++|+++++|++|+++|||||||||++||+|||+||+|||+++|++++++++.||+|
T Consensus        82 ~nllTEd~LPtY~~~l~~~~g~~d~~g~~~~~W~~Wv~~WTAEEnRHg~aLr~YL~vsr~VDp~~lE~~~~~~~~~G~~~  161 (345)
T d1afra_          82 GDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDP  161 (345)
T ss_dssp             HHHHHHHTHHHHHHHHTTSTTTCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHCCCC
T ss_pred             HhhhccccCchHHHHHHHHhccccccCCCCcchhhhccccccccchHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhHhhhhhhhhhhHHHHHHHHhHHhHhCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 016230          210 KTENNPYLGFIYTSFQERATFISHGNTARHAKEYGDLKLAQICGIIASDEKRHETAYTKIVEKLFEIDPDGTVMALADMM  289 (393)
Q Consensus       210 ~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm  289 (393)
                      +++++|+++|+|+||||+||++||+|||++|+++|||||++||++||+||+||++||+++|+++|++|||++|.||++||
T Consensus       162 ~~~~~p~~~~vY~sfQE~AT~vsh~nt~~~a~e~gDPvL~~I~~rIA~DE~rH~~fY~~~v~~~Le~dPd~~v~Ai~~~m  241 (345)
T d1afra_         162 RTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMM  241 (345)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHH
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCcccCCCCCccchhhHHHHHHHHhcCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcCchHHHHHHH
Q 016230          290 KKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWNVEKLTGLSGEGRKAQDFVCGLPPRIRRLEE  369 (393)
Q Consensus       290 ~~~i~MP~~~m~dg~~~~lf~~~savaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~e  369 (393)
                      +++|+|||++|+||+++++|++|++++|++||||++||.|||++||++|+|++++|||+||+|||||||+||+|++||+|
T Consensus       242 ~~~f~MP~~~m~dg~~~~~F~~~s~~~~r~GiY~~~d~~dil~~lv~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~e  321 (345)
T d1afra_         242 RKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEE  321 (345)
T ss_dssp             HHCCCCTTTTCCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTGGGCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCccccCCCCCcchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccccCCCHHHHHHHHHHHhhhHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchhhcCCCcCceeecCCcccC
Q 016230          370 RAQGRAKQASAVPFSWVFGREIIV  393 (393)
Q Consensus       370 r~~~~~~~~~~~~f~wi~~~~~~~  393 (393)
                      |+++|+|+...++|||||||+|.|
T Consensus       322 r~~~ra~~~~~~~fswi~~r~v~~  345 (345)
T d1afra_         322 RAQGRAKEAPTMPFSWIFDRQVKL  345 (345)
T ss_dssp             TCCHHHHTCCEEEEGGGTTEEEEC
T ss_pred             HHHHhhccCcCCceeeeccccccC
Confidence            999999887789999999999976
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]} Back     information, alignment and structure