Citrus Sinensis ID: 016237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccEEEEccccccHHcccccHHHHHHHHHHHccccEEEEccHHHHHHHccccccEEEEcccccHHHHHHcccEEEccccccEEEEcccEEEccccccHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccEEEEcccccHHHHHccHHHHHHHHHHHHccccEEEEccHHHHHHHcccccccEEEcccccHHHHHHcccEEEcccccccEEEcccEEEccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccccHEEEHHHHHHHHcccEEEEEEcccccccEEEEEEEccccccEEEcccccEEEccEEHHHccHHHccEEEEccEcHHHHHcccHHHHHHHHHHHHccccEEEEcccHHHHHHHccccccEEcccHHHHHHHHHcccEEcccccEccEEEcccEEEccccccHHHHHHHHHHHHcccEcHcccEEEEEEccccccHEEEHHHHHHHHcccEEEEEccccccccEEEEEEEEccccEEEccccccEEEccEEHHHccHHHccEEEEccEcHHHHHcccHHHHHHHHHHHHccccEEEEcccHHHHHHHccccccEEcccHHHHHHHHHcccEEcccccEccEEEcccEEEccccccHHHHHHHHHHHHccEEEc
Coil and Loop (DISEMBL)
manskggkrSVLLLCGDYMEDYEAMVPFQALLAFGvsvdaacpgkksgdvcptavhqstghqtysetrghnfalnatfdeidpskydglvipggrapeylamnDSVIDLVRKFSNSGKTIASICHGQLILAAADVvkgrkctayppvkpVLIAagaswiepetMAACVvdgniitgatyegHPEFIRLFLKAlggtitgsdKRILFLCGDymedyevavpfqslqalechvdavcpkkkagdscptavhdfegdqtysekpghnftltanfesvdvsgydalvvpggrapeylALNENVIALVKDFMEakkpvasichGQQILAAAGVlkgkkctaypaVKLNVLLAgaswlepdpidrcftdgnlvsgaawpghpEFISQLMALLGIQVLF
Flexible Loop (DISEMBL)
manskggkrsVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQstghqtysetRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Low Complexity Region (SEG)
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Disordered region (IsUnstruct)
*********SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQ****QTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFE*********GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVL*
Disordered Region (DISOPRED)
******G*****LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Disordered Region (DISEMBL)
********RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Disordered Region (DISPRO)
****KGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q9M8R4	388	Protein DJ-1 homolog D OS	yes	no	0.989	1.0	0.783	0.0
O59413	166	Intracellular protease 1	yes	no	0.418	0.987	0.347	1e-24
Q9V1F8	166	Intracellular protease 1	yes	no	0.408	0.963	0.336	4e-24
Q51732	166	Intracellular protease 1	yes	no	0.408	0.963	0.353	9e-24
Q5JGM7	166	Intracellular protease 1	yes	no	0.403	0.951	0.349	4e-22
O28987	168	Uncharacterized protein A	yes	no	0.413	0.964	0.311	1e-19
P45470	172	Protein YhbO OS=Escherich	N/A	no	0.420	0.959	0.315	8e-18
O06006	169	Putative cysteine proteas	yes	no	0.344	0.798	0.313	1e-14
P80876	172	General stress protein 18	no	no	0.428	0.976	0.286	1e-14
Q58377	205	Uncharacterized protein M	yes	no	0.331	0.634	0.34	2e-13

>sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D OS=Arabidopsis thaliana GN=DJ1D PE=1 SV=1

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/392 (78%), Positives = 343/392 (87%), Gaps = 4/392 (1%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
           MANS    R+VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct: 1   MANS----RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 56

Query: 61  HQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           HQTY E+RGHNF LNATFDE+D SKYDGLVIPGGRAPEYLA+  SV++LV++FS SGK I
Sbjct: 57  HQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPI 116

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           ASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYE
Sbjct: 117 ASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYE 176

Query: 181 GHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKA 240
           GHPEFI+LF+KALGG ITG++KRILFLCGDYMEDYEV VPFQSLQAL C VDAVCP+KKA
Sbjct: 177 GHPEFIQLFVKALGGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKA 236

Query: 241 GDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVI 300
           GD CPTA+HDFEGDQTYSEKPGH F LT NF+ +  S YDALV+PGGRAPEYLALNE+V+
Sbjct: 237 GDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVL 296

Query: 301 ALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC 360
            +VK+FM ++KPVASICHGQQILAAAGVLKG+KCTAYPAVKLNV+L G +WLEPDPIDRC
Sbjct: 297 NIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRC 356

Query: 361 FTDGNLVSGAAWPGHPEFISQLMALLGIQVLF 392
           FTDGNLV+GAAWPGHPEF+SQLMALLGIQV F
Sbjct: 357 FTDGNLVTGAAWPGHPEFVSQLMALLGIQVSF 388

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|O59413|PFPI_PYRHO Intracellular protease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pfpI PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 20/184 (10%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            VL L  +  ED E + P+  L   G  V  A                S    T +   G
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHG 45

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           ++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  I
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQI 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L +A V++GRK T+YP +K  +I AG  W++ E     VVDGN ++         ++R F
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VVVDGNWVSSRVPADLYAWMREF 161

Query: 190 LKAL 193
           +K L
Sbjct: 162 VKLL 165

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q9V1F8|PFPI_PYRAB Intracellular protease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pfpI PE=3 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 24/184 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            VL+L  D  ED E + P+  L   G  V  A                S      +   G
Sbjct: 2   RVLILSADQFEDVELIYPYHRLKEEGHEVLVA----------------SFKRGVITGKHG 45

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           +   ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  I
Sbjct: 46  YTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQI 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEF 185
           L +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++    G  Y    EF
Sbjct: 106 LISAGVLRGRRGTSYPGIKDDMINAGVDWVDAE----VVVDGNWVSSRVPGDLYAWMREF 161

Query: 186 IRLF 189
           ++L 
Sbjct: 162 VKLL 165

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q51732|PFPI_PYRFU Intracellular protease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pfpI PE=1 SV=1

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 24/184 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            +L L  +  ED E + P+  L   G  V  A   K       T  H            G
Sbjct: 2   KILFLSANEFEDVELIYPYHRLKEEGHEVYIASFEKG----VITGKH------------G 45

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           ++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  I
Sbjct: 46  YSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQI 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEF 185
           L +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDGN ++    G  Y    EF
Sbjct: 106 LISAGVLKGRKGTSYIGIRDDMINAGVEWIDRE----VVVDGNWVSSRHPGDLYAWMREF 161

Query: 186 IRLF 189
           ++L 
Sbjct: 162 VKLL 165

Highly stable protease. Although the physiological function is unclear it is the dominant protease in P.furiosus.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q5JGM7|PFPI_PYRKO Intracellular protease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pfpI PE=3 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 94/186 (50%), Gaps = 28/186 (15%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSET 67
            VL+L  D  ED E + P   +   G  V  A    GK +G                   
Sbjct: 2   KVLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 43

Query: 68  RGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
            G+   ++  FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG 
Sbjct: 44  HGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGP 103

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHP 183
            IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDGN ++    G  Y    
Sbjct: 104 QILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAE----VVVDGNWVSSRHPGDLYAWMR 159

Query: 184 EFIRLF 189
           EF++L 
Sbjct: 160 EFVKLL 165

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|O28987|Y1281_ARCFU Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1281 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 24/186 (12%)

Query: 203 RILFLCGDYMEDYEVAVPFQSL--QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEK 260
           R+L L  +  ED E+  P   L  + LE  V +   + + G                  K
Sbjct: 2   RVLILAENEFEDLELFYPLYRLREEGLEVKVASSSLEVRVG------------------K 43

Query: 261 PGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320
            G+       +E V V  Y  LV+PGG++PE + +NE  + +VKDF+E  KPVA+ICHG 
Sbjct: 44  KGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGP 103

Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFIS 380
           Q+L +A  +KG++ T++  ++ +++ AGA + E  P+     DGN+++       P F  
Sbjct: 104 QLLISAMAVKGRRMTSWIGIRDDLIAAGALY-EDRPV---VVDGNVITSRMPDDLPYFCG 159

Query: 381 QLMALL 386
           +L+ +L
Sbjct: 160 ELIKIL 165

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|P45470|YHBO_ECOLI Protein YhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 25/190 (13%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + + +L  D  ED E   P             A   +K+G    T + +  G     +  
Sbjct: 3   KKIAVLITDEFEDSEFTSP-------------ADEFRKAGHEVIT-IEKQAGKTVKGKKG 48

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
             +  ++ + DE+ P+++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  
Sbjct: 49  EASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 108

Query: 129 ILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEGHPE 184
           +L +ADV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T +  P 
Sbjct: 109 LLISADVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPA 161

Query: 185 FIRLFLKALG 194
           F R  L+ LG
Sbjct: 162 FNREALRLLG 171

Escherichia coli (strain K12) (taxid: 83333)

>sp|O06006|YRAA_BACSU Putative cysteine protease YraA OS=Bacillus subtilis (strain 168) GN=yraA PE=2 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K+I  L  D  ED E   P ++ +     V A+               D E  +  + K 
Sbjct: 3   KKIAVLVTDQFEDIEYTSPVKAYEEAGYSVVAI---------------DLEAGKEVTGKH 47

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
           G    +      VD S +DAL++PGG +P+ L  ++      K F+E KKPV +ICHG Q
Sbjct: 48  GEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQ 107

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASW 351
           +L    +LKGK  T Y +++ +++ AGA++
Sbjct: 108 VLIDTDLLKGKDITGYRSIRKDLINAGANY 137

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|P80876|GS18_BACSU General stress protein 18 OS=Bacillus subtilis (strain 168) GN=yfkM PE=1 SV=3

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 17/185 (9%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K+I  +   Y ED E   P ++              K+AG    T +   +G     ++ 
Sbjct: 3   KKIAVVLTYYFEDSEYTEPAKAF-------------KEAGHEL-TVIEKEKGKTVKGKQG 48

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
               T+ A+ + V+ S +DAL++PGG +P+ L  ++  +   K FM  KKPV +ICHG Q
Sbjct: 49  TAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQ 108

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQ 381
           +L  A  L G+K T Y ++++++  AGA  ++ + +        LV+       P F  +
Sbjct: 109 LLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQLVTSRTPDDIPAFNRE 165

Query: 382 LMALL 386
            +ALL
Sbjct: 166 SLALL 170

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q58377|Y967_METJA Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0967 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 20/150 (13%)

Query: 52  PTAVHQSTGHQT--YSETRG-------HNFALNATFDEIDPSKYDGLVIPGGR-APEYLA 101
           P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  + EYL 
Sbjct: 51  PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLW 110

Query: 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWI 159
            N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + 
Sbjct: 111 NNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYE 170

Query: 160 EPETMAACVVDGNIITGATYEGHPEFIRLF 189
           +       VVDGN+IT  +    P++ RLF
Sbjct: 171 D----RGVVVDGNVITAKS----PDYARLF 192

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
255570457	388	protease C56, putative [Ricinus communis	0.982	0.992	0.838	0.0
359476496	529	PREDICTED: uncharacterized protein LOC10	0.979	0.725	0.843	0.0
297738171	386	unnamed protein product [Vitis vinifera]	0.979	0.994	0.843	0.0
224134735	386	predicted protein [Populus trichocarpa]	0.979	0.994	0.828	0.0
118483416	386	unknown [Populus trichocarpa]	0.979	0.994	0.828	0.0
449469102	390	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.808	0.0
255570459	386	protease C56, putative [Ricinus communis	0.979	0.994	0.809	0.0
357166678	388	PREDICTED: uncharacterized protein LOC10	0.979	0.989	0.789	0.0
226498180	387	YLS5 [Zea mays] gi|194688460|gb|ACF78314	0.979	0.992	0.791	0.0
357460643	387	Intracellular protease [Medicago truncat	0.979	0.992	0.807	0.0

>gi|255570457|ref|XP_002526187.1| protease C56, putative [Ricinus communis] gi|223534491|gb|EEF36191.1| protease C56, putative [Ricinus communis]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/385 (83%), Positives = 365/385 (94%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
           +++V LLCGDYMEDYEAMVPFQALLA+GV+VDAACPGKK+GD C TA+H+S+GHQTYSE+
Sbjct: 4   QKTVFLLCGDYMEDYEAMVPFQALLAYGVAVDAACPGKKAGDYCRTAIHESSGHQTYSES 63

Query: 68  RGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
           RGHNF LN+TFD+ID  KYDGLVIPGGRAPEYLAMN+SV+D VRKF+++GK IAS+CHGQ
Sbjct: 64  RGHNFTLNSTFDDIDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFADAGKPIASVCHGQ 123

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
           LILAAA +VKGRKCTAYPPV+PVLIAAGA W+EPETMA+CV DGN+ITGATYEGHPEFI+
Sbjct: 124 LILAAAGLVKGRKCTAYPPVRPVLIAAGAHWVEPETMASCVADGNLITGATYEGHPEFIQ 183

Query: 188 LFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTA 247
           LF+KALGG+ITG+DKRILFLCGDYMEDYEV VPFQSLQAL CHV+AVCPKKKAGDSCPTA
Sbjct: 184 LFVKALGGSITGADKRILFLCGDYMEDYEVTVPFQSLQALGCHVNAVCPKKKAGDSCPTA 243

Query: 248 VHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFM 307
           VHDFEGDQTYSEKPGH+FTLTA++  +DVS YDALV+PGGRAPEYLAL+E VIALVK FM
Sbjct: 244 VHDFEGDQTYSEKPGHHFTLTASYVGLDVSSYDALVLPGGRAPEYLALDETVIALVKQFM 303

Query: 308 EAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLV 367
           ++KKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNV+L+GA+WLEPDPIDRC+TD NLV
Sbjct: 304 QSKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVVLSGATWLEPDPIDRCYTDENLV 363

Query: 368 SGAAWPGHPEFISQLMALLGIQVLF 392
           +GAAWPGHPEFISQLMALLGI+V F
Sbjct: 364 TGAAWPGHPEFISQLMALLGIRVSF 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476496|ref|XP_002272841.2| PREDICTED: uncharacterized protein LOC100247956 [Vitis vinifera]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/384 (84%), Positives = 356/384 (92%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVL+LCGDYMEDYE MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQTYSE+R
Sbjct: 146 KSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESR 205

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF +NATFDE+D SKYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQL
Sbjct: 206 GHNFTVNATFDEVDASKYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQL 265

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAA+  V+GRKCTAYP V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+L
Sbjct: 266 ILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQL 325

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F+KALGGTITGSDKRILFLCGDYMEDYEV VPFQS QALECHVDAVCPKKKAG++CPTA+
Sbjct: 326 FVKALGGTITGSDKRILFLCGDYMEDYEVMVPFQSFQALECHVDAVCPKKKAGETCPTAI 385

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+FTLTA FE +++  YDALV+PGGRAPEYLALNE VIALVK+FME
Sbjct: 386 HDFEGDQTYSEKPGHDFTLTATFEDLNIPSYDALVIPGGRAPEYLALNEKVIALVKEFME 445

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           A KPVASICHGQQILAAAGVLKGKKCTAYPAVKLNV+L+GA+WLEP+PIDRCFTDGNLV+
Sbjct: 446 AGKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVVLSGATWLEPEPIDRCFTDGNLVT 505

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHPEFISQLM LLGIQVLF
Sbjct: 506 GAAWPGHPEFISQLMTLLGIQVLF 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738171|emb|CBI27372.3| unnamed protein product [Vitis vinifera]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/384 (84%), Positives = 356/384 (92%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVL+LCGDYMEDYE MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQTYSE+R
Sbjct: 3   KSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESR 62

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF +NATFDE+D SKYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQL
Sbjct: 63  GHNFTVNATFDEVDASKYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAA+  V+GRKCTAYP V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+L
Sbjct: 123 ILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F+KALGGTITGSDKRILFLCGDYMEDYEV VPFQS QALECHVDAVCPKKKAG++CPTA+
Sbjct: 183 FVKALGGTITGSDKRILFLCGDYMEDYEVMVPFQSFQALECHVDAVCPKKKAGETCPTAI 242

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+FTLTA FE +++  YDALV+PGGRAPEYLALNE VIALVK+FME
Sbjct: 243 HDFEGDQTYSEKPGHDFTLTATFEDLNIPSYDALVIPGGRAPEYLALNEKVIALVKEFME 302

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           A KPVASICHGQQILAAAGVLKGKKCTAYPAVKLNV+L+GA+WLEP+PIDRCFTDGNLV+
Sbjct: 303 AGKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVVLSGATWLEPEPIDRCFTDGNLVT 362

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHPEFISQLM LLGIQVLF
Sbjct: 363 GAAWPGHPEFISQLMTLLGIQVLF 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134735|ref|XP_002327476.1| predicted protein [Populus trichocarpa] gi|222836030|gb|EEE74451.1| predicted protein [Populus trichocarpa]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/384 (82%), Positives = 358/384 (93%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVLLLCGDYMED+EAMVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+QTY+E+R
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQTYTESR 62

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDE+D  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQL
Sbjct: 63  GHNFTLNATFDEVDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA+ VKGRKCTAYP VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+L
Sbjct: 123 ILAAANSVKGRKCTAYPAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F++ALGG ITGSDK+ILFLCGD+MEDYEV VPFQSL+AL CHVDAVCPKKKAGD+CPTAV
Sbjct: 183 FVRALGGKITGSDKKILFLCGDFMEDYEVTVPFQSLEALGCHVDAVCPKKKAGDTCPTAV 242

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+FTLTA+FE +D S YDALV+PGGRAPEYLAL+E VIALVK+FM+
Sbjct: 243 HDFEGDQTYSEKPGHSFTLTASFEGLDASNYDALVIPGGRAPEYLALDETVIALVKEFMQ 302

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           ++KPVASICHGQQILAAAGVLKG+KCTAYP VKLNV+L GA+WLEPDPIDRC+TD NLV+
Sbjct: 303 SRKPVASICHGQQILAAAGVLKGRKCTAYPTVKLNVVLGGATWLEPDPIDRCYTDENLVT 362

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHPEF+SQLMALLGIQV F
Sbjct: 363 GAAWPGHPEFVSQLMALLGIQVSF 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483416|gb|ABK93608.1| unknown [Populus trichocarpa]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/384 (82%), Positives = 358/384 (93%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVLLLCGDYMED+EAMVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+QTY+E+R
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQTYTESR 62

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDE+D  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQL
Sbjct: 63  GHNFTLNATFDEVDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA+ VKGRKCTAYP VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+L
Sbjct: 123 ILAAANSVKGRKCTAYPAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F++ALGG ITGSDK+ILFLCGD+MEDYEV VPFQSL+AL CHVDAVCPKKKAGD+CPTAV
Sbjct: 183 FVRALGGKITGSDKKILFLCGDFMEDYEVTVPFQSLEALGCHVDAVCPKKKAGDTCPTAV 242

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+FTLTA+FE +D S YDALV+PGGRAPEYLAL+E VIALVK+FM 
Sbjct: 243 HDFEGDQTYSEKPGHSFTLTASFEGLDASNYDALVIPGGRAPEYLALDETVIALVKEFMH 302

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           +KKPVASICHGQQILAAAGVLKG+KCTAYPAVKLNV+L GA+WLEPDPIDRC+TD NLV+
Sbjct: 303 SKKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGATWLEPDPIDRCYTDENLVT 362

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHP+F+SQLMALLGI+V F
Sbjct: 363 GAAWPGHPQFVSQLMALLGIRVSF 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469102|ref|XP_004152260.1| PREDICTED: uncharacterized protein LOC101208672 [Cucumis sativus] gi|449484302|ref|XP_004156844.1| PREDICTED: uncharacterized LOC101208672 [Cucumis sativus]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/392 (80%), Positives = 357/392 (91%), Gaps = 2/392 (0%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
           MA SK   +SVLLLCGD+MEDYEAMVPFQAL+A+GVSVDA CPGKK+GD+C TA+H+  G
Sbjct: 1   MAQSK--SKSVLLLCGDFMEDYEAMVPFQALMAYGVSVDAVCPGKKAGDICRTAIHELLG 58

Query: 61  HQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           HQTYSE+RGHNFALNATFDEID  KYDGLVIPGGRAPEYLA+N SV  LVRKFS SGK I
Sbjct: 59  HQTYSESRGHNFALNATFDEIDFDKYDGLVIPGGRAPEYLAINSSVQSLVRKFSESGKPI 118

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           AS+CHGQLILAAA +V+GRKCTAY PV PVL AAGASWIEPE++AACV+DGN+IT ATYE
Sbjct: 119 ASVCHGQLILAAAGLVRGRKCTAYSPVGPVLAAAGASWIEPESLAACVIDGNLITAATYE 178

Query: 181 GHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKA 240
            HP++I+LF+KALGG ++GSDKRILFLCGDYMEDYE+ VPFQS QAL CHVD VCP KKA
Sbjct: 179 SHPQYIQLFVKALGGNVSGSDKRILFLCGDYMEDYEITVPFQSFQALGCHVDGVCPNKKA 238

Query: 241 GDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVI 300
           GD+CPTAVHDFEGDQTYSEKPGH+FTLTA+FE +D S YDALV+PGGRAPEYLALN  VI
Sbjct: 239 GDTCPTAVHDFEGDQTYSEKPGHSFTLTADFEGLDASSYDALVIPGGRAPEYLALNPQVI 298

Query: 301 ALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC 360
           A+VK+FMEAKKPVASICHGQQ+L+AAGVL+G+KCTAYPAVKLNV L+GA+W+EPDPIDRC
Sbjct: 299 AIVKEFMEAKKPVASICHGQQVLSAAGVLQGRKCTAYPAVKLNVELSGATWVEPDPIDRC 358

Query: 361 FTDGNLVSGAAWPGHPEFISQLMALLGIQVLF 392
           FTDGNLV+GAAWPGHP+FISQLM LLGIQV F
Sbjct: 359 FTDGNLVTGAAWPGHPQFISQLMTLLGIQVTF 390

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570459|ref|XP_002526188.1| protease C56, putative [Ricinus communis] gi|223534492|gb|EEF36192.1| protease C56, putative [Ricinus communis]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/384 (80%), Positives = 349/384 (90%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVLLLCGDYMED+EAMVPFQALLAFGV VDA CPGKK+G+ C TA+H+ + HQT+ E+R
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALLAFGVKVDAVCPGKKAGEFCRTAIHELSTHQTFDESR 62

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDEID  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS++GK IASICHGQL
Sbjct: 63  GHNFTLNATFDEIDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDAGKPIASICHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA +VKGR+CTA P  +PVLIAAGA W+EP+  AACV DGN+ITGATY GHPEFI+L
Sbjct: 123 ILAAAGLVKGRRCTAAPHGRPVLIAAGADWVEPQNFAACVADGNLITGATYFGHPEFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F+KALGG +TGSDKRILFLCGDYMEDYEV VPFQSLQAL CHVDAVCP+KKAGDSCPTAV
Sbjct: 183 FVKALGGIVTGSDKRILFLCGDYMEDYEVTVPFQSLQALGCHVDAVCPRKKAGDSCPTAV 242

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+FTLTA++E +D S YDALV+PGGRA EYLAL++ VI LV+DFME
Sbjct: 243 HDFEGDQTYSEKPGHHFTLTASYEELDASSYDALVIPGGRASEYLALDDTVITLVRDFME 302

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           +KKPVASICHGQQILAAAGVLKG+KCTAYPAVKLNV+L+GA+WLEPDPID C TD NLV+
Sbjct: 303 SKKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLSGATWLEPDPIDLCCTDENLVT 362

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHP+FISQLMALLGI V F
Sbjct: 363 GAAWPGHPQFISQLMALLGISVSF 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357166678|ref|XP_003580796.1| PREDICTED: uncharacterized protein LOC100841497 [Brachypodium distachyon]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/384 (78%), Positives = 348/384 (90%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + VLLLCGDYMEDYEAMVPFQAL A+GV+VDAACPGKK+GD C TAVHQ  GHQTY+E+R
Sbjct: 4   KRVLLLCGDYMEDYEAMVPFQALQAYGVAVDAACPGKKAGDSCRTAVHQPIGHQTYAESR 63

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF+LNA+FDEI+ ++YDGLVIPGGRAPEYLAM++ V+DLVRKFS++ K IAS+CHGQL
Sbjct: 64  GHNFSLNASFDEINVAEYDGLVIPGGRAPEYLAMDEKVLDLVRKFSDAKKPIASVCHGQL 123

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA VV+GR CTAYP VKPVLIAAGA+W+E +TMA C VDGN++T A Y+GHPEFI L
Sbjct: 124 ILAAAGVVQGRSCTAYPAVKPVLIAAGANWVEADTMAKCAVDGNLVTAAAYDGHPEFISL 183

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F+KALGG++ GS+KRILFLCGDYMEDYEV VPFQSLQAL CHVDAVCP K AG+ CPTA+
Sbjct: 184 FVKALGGSVAGSNKRILFLCGDYMEDYEVMVPFQSLQALGCHVDAVCPDKGAGEKCPTAI 243

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+F L A+F+SVD S YDALV+PGGRAPEYLALN  V+AL K FME
Sbjct: 244 HDFEGDQTYSEKPGHDFPLNASFDSVDASSYDALVIPGGRAPEYLALNNKVLALAKGFME 303

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           + KPVASICHGQQIL+AAGVLKG+KCTAYPAVKLNV+LAGA+WLEPDPI RC+TDGNLV+
Sbjct: 304 SGKPVASICHGQQILSAAGVLKGRKCTAYPAVKLNVVLAGATWLEPDPIHRCYTDGNLVT 363

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHPEF+SQLM+LLGI+V F
Sbjct: 364 GAAWPGHPEFVSQLMSLLGIKVSF 387

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498180|ref|NP_001146927.1| YLS5 [Zea mays] gi|194688460|gb|ACF78314.1| unknown [Zea mays] gi|195605312|gb|ACG24486.1| YLS5 [Zea mays] gi|414584851|tpg|DAA35422.1| TPA: YLS5 [Zea mays]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/384 (79%), Positives = 341/384 (88%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + VL+LCGDYMEDYE MVPFQAL A+GVSVDA CP KK+GD+C TAVHQ TGHQTYSET+
Sbjct: 4   KKVLMLCGDYMEDYEVMVPFQALQAYGVSVDAVCPSKKAGDICRTAVHQLTGHQTYSETK 63

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNA+FDEI  S+YDGLVIPGGRAPEYLAM++ V+DLVR FS + K IAS+CHGQL
Sbjct: 64  GHNFTLNASFDEITASEYDGLVIPGGRAPEYLAMDEKVLDLVRMFSGAKKPIASVCHGQL 123

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA VV+ R CTA+P VKPVL+AAGA W EP+TMA C VDGN+IT ATY  HPEFI L
Sbjct: 124 ILAAARVVENRTCTAFPAVKPVLVAAGAKWEEPDTMAKCTVDGNLITAATYNSHPEFISL 183

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           F+KALGG++ GSDKRILFLCGDYMEDYEV VPFQ+LQAL CHVDAVCP K AG++CPTA+
Sbjct: 184 FVKALGGSVAGSDKRILFLCGDYMEDYEVMVPFQALQALGCHVDAVCPDKGAGETCPTAI 243

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGH+FTLTA+F SVD S YDALVVPGGRAPEYLALN+ VI+LVK F E
Sbjct: 244 HDFEGDQTYSEKPGHDFTLTASFGSVDASSYDALVVPGGRAPEYLALNDKVISLVKAFAE 303

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           + KP+ASICHGQQIL+AAGVLKGKKCTAYPAVKLNVLL G +WLEPDPI RCFTDGNLV+
Sbjct: 304 SGKPIASICHGQQILSAAGVLKGKKCTAYPAVKLNVLLGGGTWLEPDPIHRCFTDGNLVT 363

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHPEF+SQLMALLG++V F
Sbjct: 364 GAAWPGHPEFVSQLMALLGVKVSF 387

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460643|ref|XP_003600603.1| Intracellular protease [Medicago truncatula] gi|355489651|gb|AES70854.1| Intracellular protease [Medicago truncatula]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/384 (80%), Positives = 341/384 (88%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + VLLLCGD+MEDYE MVPFQAL AFGVSVDA CPGKKSGDVC TAVH  +G QTY+ET 
Sbjct: 4   KRVLLLCGDFMEDYEGMVPFQALQAFGVSVDAVCPGKKSGDVCRTAVHILSGGQTYTETV 63

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDE+D + YDGL +PGGRAPEYLA   SV++LV KF  SGK IA ICHG L
Sbjct: 64  GHNFTLNATFDEVDHTSYDGLWLPGGRAPEYLAHIPSVVELVTKFVKSGKEIACICHGHL 123

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA VV+GRKCTA+PPVKPVL+AAGA W+EP+TM+  VVDGN+IT  TYEGHPE +R 
Sbjct: 124 ILAAAGVVEGRKCTAFPPVKPVLVAAGAHWVEPDTMSTTVVDGNLITAPTYEGHPELLRH 183

Query: 189 FLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV 248
           FLKALGG I+GSDK+ILF+CGDYMEDYEV VPFQSLQAL CHVDAVCP KKAGD+CPTAV
Sbjct: 184 FLKALGGKISGSDKKILFICGDYMEDYEVKVPFQSLQALGCHVDAVCPSKKAGDTCPTAV 243

Query: 249 HDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFME 308
           HDFEGDQTYSEKPGHNF LTA F+ VD SGYDALV+PGGR+PEYL+LNE VIALVK FME
Sbjct: 244 HDFEGDQTYSEKPGHNFALTATFDDVDPSGYDALVIPGGRSPEYLSLNEAVIALVKHFME 303

Query: 309 AKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
            KKPVASICHGQQILAAAGVLKG+KCTAYPAVKLNV+L+GA+WLEPDPI RCFTDGNLV+
Sbjct: 304 NKKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLSGATWLEPDPISRCFTDGNLVT 363

Query: 369 GAAWPGHPEFISQLMALLGIQVLF 392
           GAAWPGHPEFI+QLMALLGIQV F
Sbjct: 364 GAAWPGHPEFIAQLMALLGIQVSF 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2075532	388	DJ1D [Arabidopsis thaliana (ta	0.989	1.0	0.783	2.1e-171
TAIR|locus:2064955	398	YLS5 [Arabidopsis thaliana (ta	0.974	0.959	0.434	7.4e-82
UNIPROTKB|Q8EH52	186	SO_1378 "Peptidase family 56"	0.464	0.978	0.540	7.4e-50
TIGR_CMR|SO_1378	186	SO_1378 "ThiJ/PfpI family prot	0.464	0.978	0.540	7.4e-50
DICTYBASE|DDB_G0276405	194	pfp1 "DJ-1/ThiJ/PfpI family pr	0.482	0.974	0.450	3.2e-42
UNIPROTKB|P45470	172	yhbO "protein involved in stre	0.359	0.819	0.354	2.1e-18
TIGR_CMR|GSU_1159	167	GSU_1159 "intracellular protea	0.418	0.982	0.320	1e-16
UNIPROTKB|Q81UM2	171	BAS0802 "ThiJ/pfpI family prot	0.428	0.982	0.291	1.3e-14
TIGR_CMR|BA_0842	171	BA_0842 "thiJ/pfpI family prot	0.428	0.982	0.291	1.3e-14
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.244	0.219	0.333	7.8e-11

TAIR|locus:2075532 DJ1D [Arabidopsis thaliana (taxid:3702)]

 Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
 Identities = 307/392 (78%), Positives = 343/392 (87%)

Query:     1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
             MANS    R+VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct:     1 MANS----RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 56

Query:    61 HQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
             HQTY E+RGHNF LNATFDE+D SKYDGLVIPGGRAPEYLA+  SV++LV++FS SGK I
Sbjct:    57 HQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPI 116

Query:   121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
             ASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYE
Sbjct:   117 ASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYE 176

Query:   181 GHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKA 240
             GHPEFI+LF+KALGG ITG++KRILFLCGDYMEDYEV VPFQSLQAL C VDAVCP+KKA
Sbjct:   177 GHPEFIQLFVKALGGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKA 236

Query:   241 GDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVI 300
             GD CPTA+HDFEGDQTYSEKPGH F LT NF+ +  S YDALV+PGGRAPEYLALNE+V+
Sbjct:   237 GDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVL 296

Query:   301 ALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC 360
              +VK+FM ++KPVASICHGQQILAAAGVLKG+KCTAYPAVKLNV+L G +WLEPDPIDRC
Sbjct:   297 NIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRC 356

Query:   361 FTDGNLVSGAAWPGHPEFISQLMALLGIQVLF 392
             FTDGNLV+GAAWPGHPEF+SQLMALLGIQV F
Sbjct:   357 FTDGNLVTGAAWPGHPEFVSQLMALLGIQVSF 388

GO:0005737 "cytoplasm" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

TAIR|locus:2064955 YLS5 [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 172/396 (43%), Positives = 245/396 (61%)

Query:     8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
             ++S LLLCGDYME YE +VP   L +FGVSV    P + +GD C  + H   G + Y+E 
Sbjct:     6 QKSALLLCGDYMEAYETIVPLYVLQSFGVSVHCVSPNRNAGDRCVMSAHDFLGLELYTEL 65

Query:    68 RGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
                   LNA FD++ P  YD ++IPGGR  E L+ ++  +DLV +F+ S K I + CH Q
Sbjct:    66 VVDQLTLNANFDDVTPENYDVIIIPGGRFTELLSADEKCVDLVARFAESKKLIFTSCHSQ 125

Query:   128 LILAAADVVKGR-KCTAYPPVKPVL-IAAGASWIEP--ETM---AACVVDGNIITGATYE 180
             ++L AA ++ G  KCTA+  +KP++ ++ G  W +P  ++M     CV DGN ++   + 
Sbjct:   126 VMLMAAGILAGGVKCTAFESIKPLIELSGGEWWQQPGIQSMFEITDCVKDGNFMSTVGWP 185

Query:   181 GHPEFIRLFLKALGGTITGSDKR---ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPK 237
                  I+L L++LGG +   +K+   +LFL GDY+EDY + VPF++LQAL C VDAV P 
Sbjct:   186 TLGHGIKLLLESLGGKVCSLEKKQASVLFLIGDYVEDYGINVPFRALQALGCKVDAVTPN 245

Query:   238 KKAGDSCPTAVHDFE-GDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN 296
             KK G+ C TAV+D E G Q  +EK GHNF +TA+++ + V  YD +VVPGGR+PE L +N
Sbjct:   246 KKKGEVCATAVYDLEDGRQIPAEKRGHNFFVTASWDDICVDDYDCVVVPGGRSPELLVMN 305

Query:   297 ENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDP 356
             E  +ALVK F E  K  A+I  G+ +LAA GVLKGK+C +   +K+ V +AG    E   
Sbjct:   306 EKAVALVKSFAEKDKVFAAIGQGKLLLAATGVLKGKRCASGKGMKVMVKVAGG---EAVM 362

Query:   357 IDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF 392
                C TDG +V+ A+    P F+  L   LG+ V+F
Sbjct:   363 EKGCVTDGKVVTAASATDLPAFLFDLSTALGLTVMF 398

GO:0005737 "cytoplasm" evidence=ISM

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|Q8EH52 SO_1378 "Peptidase family 56" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/183 (54%), Positives = 126/183 (68%)

Query:   204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH 263
             IL + GD++EDYE+ VPFQ+LQ +   V  VCP K AG +  TA+HDFEGDQTY+EKPGH
Sbjct:     4 ILIIAGDFVEDYELMVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEGDQTYTEKPGH 63

Query:   264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              F L  NF   + S +DAL++PGGRAPEYL LN  VIALV DF    KP+A+ICHG Q+L
Sbjct:    64 LFALNGNFAGANASDFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQLL 123

Query:   324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLM 383
              AA V++GKK +AYPA    V  AGA + + + +    TDG LV+  AWP HP +++Q  
Sbjct:   124 TAADVVRGKKVSAYPACAPEVKQAGAEYCDIE-VTAAITDGKLVTAPAWPAHPAWLAQFN 182

Query:   384 ALL 386
              LL
Sbjct:   183 KLL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1378 SO_1378 "ThiJ/PfpI family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/183 (54%), Positives = 126/183 (68%)

Query:   204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH 263
             IL + GD++EDYE+ VPFQ+LQ +   V  VCP K AG +  TA+HDFEGDQTY+EKPGH
Sbjct:     4 ILIIAGDFVEDYELMVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEGDQTYTEKPGH 63

Query:   264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              F L  NF   + S +DAL++PGGRAPEYL LN  VIALV DF    KP+A+ICHG Q+L
Sbjct:    64 LFALNGNFAGANASDFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQLL 123

Query:   324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLM 383
              AA V++GKK +AYPA    V  AGA + + + +    TDG LV+  AWP HP +++Q  
Sbjct:   124 TAADVVRGKKVSAYPACAPEVKQAGAEYCDIE-VTAAITDGKLVTAPAWPAHPAWLAQFN 182

Query:   384 ALL 386
              LL
Sbjct:   183 KLL 185

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0276405 pfp1 "DJ-1/ThiJ/PfpI family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 86/191 (45%), Positives = 124/191 (64%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQST-GHQTYSET 67
             R++L++ GDY EDYE     Q L   G +V    PGKKSGD   TA+H    G QTY+E 
Sbjct:     3 RNILIITGDYTEDYETYAVKQMLELVGYNVHLVSPGKKSGDFIVTAIHDFLPGEQTYTEL 62

Query:    68 RGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
             +GH   LN  FD++D + Y+GL +PGGR  E+L ++D VI++V+ F+ + K IA++CHG 
Sbjct:    63 KGHRIQLNFDFDKVDTATYNGLFLPGGRCSEFLRLDDRVIEIVKDFNTNKKPIAAVCHGA 122

Query:   128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
              +L AA++V G KCTAYP  +P +  AG  + +   +   VVDG+I++G  +  HP+ I+
Sbjct:   123 QVLTAANIVSGIKCTAYPACRPEVQQAGGIY-QDIAVDDAVVDGHIVSGKAWPCHPKLIQ 181

Query:   188 LFLKALGGTIT 198
             LF+K LG TIT
Sbjct:   182 LFIKLLGTTIT 192

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P45470 yhbO "protein involved in stress response" [Escherichia coli K-12 (taxid:83333)]

 Score = 226 (84.6 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 55/155 (35%), Positives = 91/155 (58%)

Query:    45 KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN 103
             +K+G    T + +  G +T    +G  +  ++ + DE+ P+++D L++PGG +P+YL  +
Sbjct:    26 RKAGHEVIT-IEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGD 83

Query:   104 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA---AGASWIE 160
             +  +   R F NSGK + +ICHG  +L +ADV++GRK TA   VKP++I    AGA + +
Sbjct:    84 NRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYD 140

Query:   161 PETMAACVVDGN-IITGATYEGHPEFIRLFLKALG 194
              E     VVD + ++T  T +  P F R  L+ LG
Sbjct:   141 QEV----VVDKDQLVTSRTPDDLPAFNREALRLLG 171

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009268 "response to pH" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

TIGR_CMR|GSU_1159 GSU_1159 "intracellular protease, PfpI family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 211 (79.3 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 59/184 (32%), Positives = 90/184 (48%)

Query:    12 LLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN 71
             L++  D  ED E ++P+  LL  G+ V  A P +  G +        TG   Y+ T   +
Sbjct:     4 LIISADQFEDSELLIPYYRLLEEGIPVRIAAPAR--GTI--------TGKHGYAVTA--D 51

Query:    72 FALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
              AL     E+    Y  L++PGG+AP  +    + +++ R F    + +A+ICHG   L 
Sbjct:    52 LALA----EVAADDYTILILPGGKAPAAVRREPAALEICRSFFAHVRPVAAICHGPQTLV 107

Query:   132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLK 191
             +A ++ GR+ T Y  V   L  AGA + + E     VVDGN+IT       P F+R  +K
Sbjct:   108 SAGLLSGRRATCYRSVADELRGAGALYEDSEV----VVDGNLITSREPADLPAFMREIMK 163

Query:   192 ALGG 195
              L G
Sbjct:   164 KLKG 167

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|Q81UM2 BAS0802 "ThiJ/pfpI family protein" [Bacillus anthracis (taxid:1392)]

 Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 54/185 (29%), Positives = 91/185 (49%)

Query:   202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
             K+I  L  DY ED E   P ++ +     +  +  +K  G +    VH   G Q  SE  
Sbjct:     3 KKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEK--GKT----VH---GKQGKSE-- 51

Query:   262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
                  +    + V    +DAL +PGG +P+ L  +E  +   K FM+A+KPV +ICHG Q
Sbjct:    52 ---VVIDTGIDDVSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGPQ 108

Query:   322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQ 381
             +L  A  L+G+  T Y ++++++  AG ++ + + +  C     LV+       P FI +
Sbjct:   109 LLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVVV-C--QNQLVTSRQPEDIPAFIEE 165

Query:   382 LMALL 386
              + +L
Sbjct:   166 SLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0842 BA_0842 "thiJ/pfpI family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 54/185 (29%), Positives = 91/185 (49%)

Query:   202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
             K+I  L  DY ED E   P ++ +     +  +  +K  G +    VH   G Q  SE  
Sbjct:     3 KKIAILITDYFEDTEYTEPAEAFKQKGYELTTIEAEK--GKT----VH---GKQGKSE-- 51

Query:   262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
                  +    + V    +DAL +PGG +P+ L  +E  +   K FM+A+KPV +ICHG Q
Sbjct:    52 ---VVIDTGIDDVSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGPQ 108

Query:   322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQ 381
             +L  A  L+G+  T Y ++++++  AG ++ + + +  C     LV+       P FI +
Sbjct:   109 LLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVVV-C--QNQLVTSRQPEDIPAFIEE 165

Query:   382 LMALL 386
              + +L
Sbjct:   166 SLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
 Identities = 35/105 (33%), Positives = 55/105 (52%)

Query:   272 ESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA-GVL 329
             +  + + YD +V+PGG    E  A +E ++ ++K   E+ KP  +IC    ++    G+L
Sbjct:   313 DEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLL 372

Query:   330 KGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
             KGKK TA+PA+     L   S +E     R   DGNL++    PG
Sbjct:   373 KGKKATAFPAMCSK--LTDQSHIE----HRVLVDGNLITSRG-PG 410

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8R4	DJ1D_ARATH	No assigned EC number	0.7831	0.9897	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	2e-97
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	1e-93
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	9e-51
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	2e-49
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	3e-42
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	7e-39
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	3e-36
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	8e-33
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-32
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	1e-30
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	3e-20
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	8e-18
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	6e-16
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	2e-14
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	9e-14
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	2e-12
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	1e-10
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	3e-10
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	6e-10
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	7e-10
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	2e-09
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	2e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	4e-08
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	6e-08
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	1e-07
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	1e-07
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	4e-07
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	1e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	2e-06
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	5e-06
PRK03619	219	PRK03619, PRK03619, phosphoribosylformylglycinamid	7e-06
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	9e-06
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	1e-05
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-05
cd03147	231	cd03147, GATase1_Ydr533c_like, Type 1 glutamine am	1e-05
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	2e-05
cd01740	238	cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotr	3e-05
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	4e-05
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	6e-05
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	7e-05
COG0118	204	COG0118, HisH, Glutamine amidotransferase [Amino a	7e-05
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	1e-04
COG0047	231	COG0047, PurL, Phosphoribosylformylglycinamidine (	2e-04
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	6e-04
cd01741	188	cd01741, GATase1_1, Subgroup of proteins having th	0.001
PRK12564	360	PRK12564, PRK12564, carbamoyl phosphate synthase s	0.001
TIGR01855	196	TIGR01855, IMP_synth_hisH, imidazole glycerol phos	0.001
cd03133	213	cd03133, GATase1_ES1, Type 1 glutamine amidotransf	0.001
PRK11780	217	PRK11780, PRK11780, isoprenoid biosynthesis protei	0.001
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	0.003
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	0.004

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score =  287 bits (737), Expect = 2e-97
 Identities = 110/184 (59%), Positives = 136/184 (73%), Gaps = 4/184 (2%)

Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262
           +IL L GD++EDYEV VPFQ+LQ +   VD V P KK GD+  TA+HDF G QTY+EKPG
Sbjct: 1   KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPG 60

Query: 263 HNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQI 322
           H F +TA+F+ VD   YDALV+PGGRAPEYL L+E V+A+V+ F EA KPVA+ICHG QI
Sbjct: 61  HRFAVTADFDEVDPDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQI 120

Query: 323 LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQL 382
           LAAAGVLKG++CTAYPA K  V LAG + ++    D    DGNLV+  AWP HP F+ + 
Sbjct: 121 LAAAGVLKGRRCTAYPACKPEVELAGGTVVD----DGVVVDGNLVTAQAWPDHPAFLREF 176

Query: 383 MALL 386
           + LL
Sbjct: 177 LKLL 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score =  277 bits (711), Expect = 1e-93
 Identities = 98/184 (53%), Positives = 125/184 (67%), Gaps = 4/184 (2%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            +L+L GD++EDYE MVPFQAL   G  VD   PGKK GD   TA+H   G QTY+E  G
Sbjct: 1   KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPG 60

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           H FA+ A FDE+DP  YD LVIPGGRAPEYL +++ V+ +VR F+ + K +A+ICHG  I
Sbjct: 61  HRFAVTADFDEVDPDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQI 120

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           LAAA V+KGR+CTAYP  KP +  AG + ++       VVDGN++T   +  HP F+R F
Sbjct: 121 LAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVVDGNLVTAQAWPDHPAFLREF 176

Query: 190 LKAL 193
           LK L
Sbjct: 177 LKLL 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score =  167 bits (425), Expect = 9e-51
 Identities = 70/184 (38%), Positives = 100/184 (54%), Gaps = 19/184 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           +L+L  D  ED E + P   L   G  VD                       T     G+
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEA----------------GTTVGKHGY 45

Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
           +  ++AT DE++P +YD LVIPGGRAPEYL +N+  + LVR+F   GK +A+ICHG  +L
Sbjct: 46  SVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLL 105

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFL 190
            +A V++G+K T+YP +   +  AGA +++ E     VVDGN++T    +  P F R FL
Sbjct: 106 ISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVVDGNLVTSRVPDDLPAFNREFL 162

Query: 191 KALG 194
           K LG
Sbjct: 163 KLLG 166

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score =  164 bits (416), Expect = 2e-49
 Identities = 73/184 (39%), Positives = 101/184 (54%), Gaps = 19/184 (10%)

Query: 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH 263
           +L L  D  ED E+  P   L+     VD V  +                  T   K G+
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEA----------------GTTVGKHGY 45

Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
           + T+ A  + V+   YDALV+PGGRAPEYL LN   + LV++F+E  KPVA+ICHG Q+L
Sbjct: 46  SVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLL 105

Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLM 383
            +AGVL+GKK T+YPA+  +V  AGA +++   I+    DGNLV+       P F  + +
Sbjct: 106 ISAGVLRGKKLTSYPAIIDDVKNAGAEYVD---IEVVVVDGNLVTSRVPDDLPAFNREFL 162

Query: 384 ALLG 387
            LLG
Sbjct: 163 KLLG 166

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score =  145 bits (368), Expect = 3e-42
 Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 20/183 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           V +L  D  ED E   P   L   G  V  A P                         G+
Sbjct: 2   VAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAG---------------GEIQGKHGY 46

Query: 71  N-FALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           +   ++ T  ++D   YD LVIPGG  P+ L  +   +  VR F+ +GK +A+ICHG  +
Sbjct: 47  DTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWV 106

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L +A VV+GRK T+YP +K  LI AGA+W++       VVDGN+IT    +  P F R  
Sbjct: 107 LISAGVVRGRKLTSYPSIKDDLINAGANWVD----EEVVVDGNLITSRNPDDLPAFNRAI 162

Query: 190 LKA 192
           LKA
Sbjct: 163 LKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score =  136 bits (345), Expect = 7e-39
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 20/167 (11%)

Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262
           ++  L  D  ED E+  P   L+     V    P               E       K G
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGP---------------EAGGEIQGKHG 45

Query: 263 HN-FTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
           ++  T+      VD   YDALV+PGG  P+ L  + + +A V+ F EA KPVA+ICHG  
Sbjct: 46  YDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPW 105

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           +L +AGV++G+K T+YP++K +++ AGA+W++ +       DGNL++
Sbjct: 106 VLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----VVVDGNLIT 148

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  130 bits (328), Expect = 3e-36
 Identities = 71/197 (36%), Positives = 100/197 (50%), Gaps = 23/197 (11%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           + +L  D  ED E +VP+  L   G  VD A P  K               ++ +  RG 
Sbjct: 5   IAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGG 50

Query: 71  NF-ALNATFDEIDPSKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
              A +  FD+ D + YD LVIPGG   PEYL  +  ++  VR F  +GK +A+ICHG  
Sbjct: 51  LVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA 110

Query: 129 ILAAAD-VVKGRKCTAYPPVKPVLI----AAGASWIEPETMAA-CVVDGN-IITGATYEG 181
           +LAAA  ++KGRK TA+P ++  +      AGA++++        VVDGN ++TG     
Sbjct: 111 VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPAS 170

Query: 182 HPEFIRLFLKALGGTIT 198
            P F    LKALGG   
Sbjct: 171 APAFALELLKALGGAEK 187

Length = 188

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  119 bits (301), Expect = 8e-33
 Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 65  SETRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASI 123
            +        + T D+++   YD LVIPGG A  E L  ++ ++  V++F  SGK IA+I
Sbjct: 15  GKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAI 74

Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGH 182
           CHG ++LAAA ++KGR+ T++P VK +L  AGA +++       VVDGN ++T A     
Sbjct: 75  CHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQ----PVVVDGNKLVTSAGPGSA 130

Query: 183 PEFIRLFLKALG 194
            EF    L+ALG
Sbjct: 131 EEFALELLEALG 142

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  120 bits (303), Expect = 1e-32
 Identities = 70/195 (35%), Positives = 98/195 (50%), Gaps = 23/195 (11%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K+I  L  D  ED E+ VP+  L+     VD   P+                 ++ + K 
Sbjct: 3   KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEG--------------KGKSVTSKR 48

Query: 262 GHNFTL-TANFESVDVSGYDALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHG 319
           G         F+  D + YDALV+PGG   PEYL  + +++A V+DF    KPVA+ICHG
Sbjct: 49  GGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHG 108

Query: 320 QQILAAAG-VLKGKKCTAYPA----VKLNVLLAGASWLEPDPI-DRCFTDGN-LVSGAAW 372
             +LAAAG +LKG+K TA+P     VK     AGA++++     D    DGN LV+G   
Sbjct: 109 PAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNP 168

Query: 373 PGHPEFISQLMALLG 387
              P F  +L+  LG
Sbjct: 169 ASAPAFALELLKALG 183

Length = 188

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  113 bits (286), Expect = 1e-30
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 6/132 (4%)

Query: 258 SEKPGHNFTLTANFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASI 316
            +            + V+   YDALV+PGG A  E L  +E ++  VK+F E+ KP+A+I
Sbjct: 15  GKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAI 74

Query: 317 CHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGN-LVSGAAWPGH 375
           CHG  +LAAAG+LKG++ T++P+VK  +  AGA +++         DGN LV+ A     
Sbjct: 75  CHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQ----PVVVDGNKLVTSAGPGSA 130

Query: 376 PEFISQLMALLG 387
            EF  +L+  LG
Sbjct: 131 EEFALELLEALG 142

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score = 86.5 bits (215), Expect = 3e-20
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 22/167 (13%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           VL++  D  E+ EA+ P   L   G+ V  A   KK           + G        G 
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK----------LAVGSS-----HGI 45

Query: 71  NFALNATFDEIDPSKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
               + T  +++   YD +VIPGG    + LA N+ +I L+++F+  GK IA+IC    +
Sbjct: 46  KVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAV 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           LA A ++KG+K T YP  +  L  A             VVDGNIIT 
Sbjct: 106 LAKAGLLKGKKATCYPGFEDKLGGANYVD------EPVVVDGNIITS 146

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score = 79.5 bits (197), Expect = 8e-18
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 10/116 (8%)

Query: 263 HNFTLTAN--FESVDVSGYDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHG 319
           H   + A+     V++  YDA+V+PGG    + LA NE +I L+K+F    K +A+IC  
Sbjct: 43  HGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAA 102

Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGH 375
             +LA AG+LKGKK T YP  +  +  A       +P+     DGN+++    PG 
Sbjct: 103 PAVLAKAGLLKGKKATCYPGFEDKLGGANYVD---EPVVV---DGNIITSRG-PGT 151

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)

Query: 23  EAMVPFQALLAFGVSVDAACP-GKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF--- 78
           E   P+      G  VD A P G K          +S       +     F  +  F   
Sbjct: 24  ELAHPYDVFTEAGYEVDFASPKGGK-----VPLDPRS--LDAEDDDDASVFDNDEEFKKK 76

Query: 79  -------DEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
                   ++DPS YD + IPGG  P + L  N  + DL+R+F  +GK +A++CHG   L
Sbjct: 77  LANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAAL 136

Query: 131 AAAD------VVKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CV 168
                     +V G+  T +                 ++  L   GA++++ E  A   V
Sbjct: 137 LNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVV 196

Query: 169 VDGNIITG 176
           VDG +ITG
Sbjct: 197 VDGRLITG 204

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 67  TRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
             G     + +F   DP   D L++PGG     L  + +++D +R+ +   K + S+C G
Sbjct: 46  RSGLTVLPDTSFA--DPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTG 103

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
            L+LAAA ++ GR+ T +      L   GA        A  VVDGNI T  
Sbjct: 104 ALLLAAAGLLDGRRATTHWAAIDWLKEFGA---IVVVDARWVVDGNIWTSG 151

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score = 68.5 bits (168), Expect = 9e-14
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 76  ATFDEIDPSKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134
           A+ +++D  K+D +V+PGG    E L  +  ++++++   + GK +A+IC    +L A  
Sbjct: 54  ASLEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHG 113

Query: 135 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           V+ G+K T YP  K  L     ++   +T+   VVDGN+IT  
Sbjct: 114 VLLGKKATCYPGFKEKL--LNGNYSVNKTV---VVDGNLITSR 151

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 35/185 (18%)

Query: 216 EVAVPFQSLQALECHVDAVCPKKKA----GDSCPTAVHD----FEGDQTYSEKPGHNFTL 267
           E+A P+         VD   PK         S      D    F+ D+ + +K  +    
Sbjct: 24  ELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLAN---- 79

Query: 268 TANFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
           T     VD S YDA+ +PGG  P + L  N ++  L+++F E  K VA++CHG   L   
Sbjct: 80  TKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139

Query: 327 G------VLKGKKCTAYP-----AVKLNVLL----------AGASWLEPDPI-DRCFTDG 364
                  ++ GK  T +      A  L  ++           GA++++ +P  +    DG
Sbjct: 140 KLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDG 199

Query: 365 NLVSG 369
            L++G
Sbjct: 200 RLITG 204

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 24/128 (18%)

Query: 78  FDEIDPSKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134
            D++ P  YD L++PGG +   PE       +  LVR+    GK +A+IC   L LA A 
Sbjct: 53  LDDLPPEDYDLLILPGGDSWDNPE----APDLAGLVRQALKQGKPVAAICGATLALARAG 108

Query: 135 VVKGRKCT--------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
           ++  RK T        A+ P           + EP+     V DGN+IT A      EF 
Sbjct: 109 LLNNRKHTSNSLDFLKAHAP----YYGGAEYYDEPQA----VSDGNLIT-ANGTAPVEFA 159

Query: 187 RLFLKALG 194
              L+AL 
Sbjct: 160 AEILRALD 167

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 265 FTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA 324
            T+  +    D    D L+VPGG     L  +  ++  ++      K V S+C G  +LA
Sbjct: 49  LTVLPDTSFADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108

Query: 325 AAGVLKGKKCT----AYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
           AAG+L G++ T    A   +K      GA         R   DGN+ +  
Sbjct: 109 AAGLLDGRRATTHWAAIDWLK----EFGA---IVVVDARWVVDGNIWTSG 151

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 271 FESVDVSGYDALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVL 329
            E VD+  +D +V+PGG    E L  ++ ++ ++K      K VA+IC    +L A GVL
Sbjct: 56  LEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVL 115

Query: 330 KGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
            GKK T YP  K  +L    ++     +     DGNL++  
Sbjct: 116 LGKKATCYPGFKEKLL--NGNYSVNKTVVV---DGNLITSR 151

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 30/121 (24%)

Query: 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH 263
           +  L     E+ E+A P  +L+     VD V P     +S                    
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVES-------------------- 40

Query: 264 NFTLTANFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQI 322
                     VD+  YD L++PGG   P+ LA +E ++AL+++   A KP+  IC G Q+
Sbjct: 41  ---------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQL 91

Query: 323 L 323
           L
Sbjct: 92  L 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 67  TRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
           T  +   +       D  + D +++PGG      A + +++  ++    +G+ + ++C G
Sbjct: 42  TSMNGVTITVDAPLADAPEADAVLVPGGPGTRAAAADPALLAQLQLADPAGQLLGAVCSG 101

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGA--SWIEPETMAACVVDGNIIT 175
            L+LA A ++ GR  T +  +KP L  AG     I+       V DGN+ T
Sbjct: 102 ALLLAEAGLLDGRPATTHWTLKPWLREAGPKVLLID----RPFVADGNLAT 148

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 30/121 (24%)

Query: 204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH 263
           +  L     E+ E+A P  +L+     VD V P     +S                    
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVES-------------------- 40

Query: 264 NFTLTANFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQI 322
                     VD+  YD L++PGG   P+ LA +E ++AL+++   A KPV  IC G Q+
Sbjct: 41  ---------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91

Query: 323 L 323
           L
Sbjct: 92  L 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 30/121 (24%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           V +L     E+ E   P  AL   G  VD   P     +                     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVE--------------------- 39

Query: 71  NFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
                    ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK I  IC G  +
Sbjct: 40  --------SDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQL 91

Query: 130 L 130
           L
Sbjct: 92  L 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 26/112 (23%)

Query: 274 VDVSGYDALVVPG-GRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLK 330
            DV   D ++VPG G  P+   LA N  +IA ++        VA+ C G  +LA AG+L 
Sbjct: 65  ADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLD 124

Query: 331 GKKCT-----------AYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAA 371
           G++ T            +P V+L            DP     TDGNL++   
Sbjct: 125 GRRATTHWWLAPQFRRRFPKVRL------------DPDRVVVTDGNLITAGG 164

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 271 FESVDVSGYDALVVPGGRA---PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327
            + +    YD L++PGG +   PE      ++  LV+  ++  KPVA+IC     LA AG
Sbjct: 53  LDDLPPEDYDLLILPGGDSWDNPE----APDLAGLVRQALKQGKPVAAICGATLALARAG 108

Query: 328 VLKGKKCT-AYPAVKLNVLL---AGASWLEPDPIDRCFTDGNLV--SGAAWPGHPEFISQ 381
           +L  +K T                   + EP  +    +DGNL+  +G A P   EF ++
Sbjct: 109 LLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAV----SDGNLITANGTA-PV--EFAAE 161

Query: 382 LMALLGI 388
           ++  L +
Sbjct: 162 ILRALDV 168

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 79  DEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
            ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK +  IC G  +L
Sbjct: 40  SDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query: 279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCT--- 335
            D ++VPGG   +       ++A ++        VAS+C G  +LA AG+L G++ T   
Sbjct: 65  ADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHW 124

Query: 336 --------AYPAVKLNVLLAGASWLEPDPIDRCFT-DGNLVSGA 370
                    +PAV+          ++PD +   +  DGN+ + A
Sbjct: 125 AYAEDLARRFPAVR----------VDPDVL---YVDDGNVWTSA 155

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
            +  T+T +    D    DA++VPGG      A +  ++A ++    A + + ++C G  
Sbjct: 44  MNGVTITVDAPLADAPEADAVLVPGGPGTRAAAADPALLAQLQLADPAGQLLGAVCSGAL 103

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT-DGNLVSGAAWPGH 375
           +LA AG+L G+  T +  +K  +  AG    +   IDR F  DGNL +       
Sbjct: 104 LLAEAGLLDGRPATTHWTLKPWLREAGP---KVLLIDRPFVADGNLATAGGCLAA 155

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKC 334
           D    D L V GG      A+   ++A ++        +  I  G  +LA AG+L G++ 
Sbjct: 61  DAPPLDYLFVVGGLGARR-AVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRA 119

Query: 335 TA 336
           T 
Sbjct: 120 TV 121

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 275 DVSGYDALVVPGG-------RAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327
            +  YD +V+PGG       RA    A +  ++  V++F E   PV  IC+G QIL  AG
Sbjct: 37  SLPDYDGVVLPGGFSYGDYLRAGAIAAASP-IMQEVREFAEKGVPVLGICNGFQILVEAG 95

Query: 328 VLKG 331
           +L G
Sbjct: 96  LLPG 99

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I; Provisional

 Score = 46.3 bits (111), Expect = 7e-06
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 8/64 (12%)

Query: 275 DVSGYDALVVPGG-------RAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327
           D+ G DA+V+PGG       R    +A    ++  VK+F E  KPV  IC+G QIL  AG
Sbjct: 38  DLDGVDAVVLPGGFSYGDYLRCGA-IAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAG 96

Query: 328 VLKG 331
           +L G
Sbjct: 97  LLPG 100

Length = 219

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKC 334
                D L V GG  PE       ++A ++        +  +C G  +LA AG+L G++ 
Sbjct: 73  AAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRA 132

Query: 335 T-----------AYPAVKL 342
           T            +P V++
Sbjct: 133 TTHWEHAEDFQERFPDVRV 151

Length = 328

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 23/103 (22%)

Query: 86  YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT--- 142
            D +++PGG   +      +++  +R+ +  G  +AS+C G  +LA A ++ GR+ T   
Sbjct: 65  ADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHW 124

Query: 143 --------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
                    +P V+          ++P+     V DGN+ T A
Sbjct: 125 AYAEDLARRFPAVR----------VDPD--VLYVDDGNVWTSA 155

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 24/117 (20%)

Query: 72  FALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
            ++            D L + GG  PE      +++  +R+ +  G  +  +C G  +LA
Sbjct: 63  LSIAPDGGLEAAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122

Query: 132 AADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
            A ++ GR+ T            +P V+              T    V+DG+ IT A
Sbjct: 123 EAGLLDGRRATTHWEHAEDFQERFPDVR-------------VTDRLFVIDGDRITCA 166

Length = 328

>gnl|CDD|153241 cd03147, GATase1_Ydr533c_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 37/135 (27%)

Query: 76  ATFDEIDPSKYDGLVIPGGRAPEYLAMND-----SVIDLVRKFSNSGKTIASICHGQLIL 130
              DE++P  Y    + GG       + D     ++  + ++   +G  +A++CHG  IL
Sbjct: 85  KKADEVNPDDYGIFFVAGGHG----TLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAIL 140

Query: 131 AAAD-------VVKGRKCTAY-------------------PPVKPVLIAAGASWIEPETM 164
           A          ++KG+  T +                     ++ +   AGA++I P   
Sbjct: 141 ANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESIEDIAERAGANFIRPPGP 200

Query: 165 AA--CVVDGNIITGA 177
                VVDG I+TG+
Sbjct: 201 WDDFTVVDGRIVTGS 215

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. Length = 231

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 26/106 (24%)

Query: 86  YDGLVIPG-GRAPEYLAMND--SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT 142
            D +++PG G  P+ L + D  ++I  +R+   +G T+A+ C G  +LA A ++ GR+ T
Sbjct: 70  PDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRAT 129

Query: 143 -----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
                       +P V+          ++P+ +   V DGN+IT  
Sbjct: 130 THWWLAPQFRRRFPKVR----------LDPDRVV--VTDGNLITAG 163

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 19/82 (23%)

Query: 269 ANFESVDV------------SGYDALVVPGG-------RAPEYLALNENVIALVKDFMEA 309
           A FE+ DV              YD +V+PGG       RA    A +  ++  VK+F E 
Sbjct: 22  AGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER 81

Query: 310 KKPVASICHGQQILAAAGVLKG 331
              V  IC+G QIL   G+L G
Sbjct: 82  GGLVLGICNGFQILVELGLLPG 103

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 238

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 82  DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 141
           D    D L + GG      A+  +++  +R+ +  G  +  I  G  +LA A ++ GR+ 
Sbjct: 61  DAPPLDYLFVVGGLGARR-AVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRA 119

Query: 142 TA 143
           T 
Sbjct: 120 TV 121

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 75  NATFDEIDPSKYDGLVI---PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
           N   +EI     DG+ +   PG   P  L   D  I  VRK       I  IC G  +LA
Sbjct: 29  NTDAEEILKLDPDGIFLSNGPGD--PALL---DEAIKTVRKLLGKKIPIFGICLGHQLLA 83

Query: 132 AA 133
            A
Sbjct: 84  LA 85

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 268 TANFESVDVSGYDALVV---PGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA 324
             + E +     D + +   PG   P  L   +  I  V+  +  K P+  IC G Q+LA
Sbjct: 29  NTDAEEILKLDPDGIFLSNGPGD--PALL---DEAIKTVRKLLGKKIPIFGICLGHQLLA 83

Query: 325 -AAG 327
            A G
Sbjct: 84  LALG 87

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism]

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 259 EKPGHNFTLTANFESVDVSGYDALVVPG-GRAPEYLA-LNE-NVIALVKDFMEAKKPVAS 315
           E+ G    ++ + E  ++   D L++PG G     +A L E  +I  +K+ +E+ KP   
Sbjct: 22  ERLGAEVVVSRDPE--EILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLG 79

Query: 316 ICHGQQILAAAGV 328
           IC G Q+L     
Sbjct: 80  ICLGMQLLFERSE 92

Length = 204

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 268 TANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA--- 324
               E +     D +++  G  P         I  +K+  E K P+  IC G Q+LA   
Sbjct: 30  DTPAEEILELNPDGIIISPG--PGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAF 87

Query: 325 AAGVLKGKK 333
              V+K KK
Sbjct: 88  GGKVIKAKK 96

Length = 186

>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 14/77 (18%)

Query: 269 ANFESVDV--------SGYDALVVPGG-RAPEYL-----ALNENVIALVKDFMEAKKPVA 314
           A FE+ DV          +D +V+PGG    +YL     A    V+  V++F E  KPV 
Sbjct: 26  AGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVL 85

Query: 315 SICHGQQILAAAGVLKG 331
            IC+G QIL+ AG+L G
Sbjct: 86  GICNGFQILSEAGLLPG 102

Length = 231

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 297 ENVIALVKDFMEAKKPVASICHGQQILAAA 326
           +  I  +K+ +  K P+  IC G Q+LA A
Sbjct: 237 DYAIETIKELLGTKIPIFGICLGHQLLALA 266

Length = 368

>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 275 DVSGYDALVVPGGRA----PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
           D+  YD LV+ GG       +Y  L + +  L++  + A KPV  IC G Q+LA A
Sbjct: 43  DLDDYDGLVILGGPMSVDEDDYPWL-KKLKELIRQALAAGKPVLGICLGHQLLARA 97

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188

>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 40.4 bits (96), Expect = 0.001
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 297 ENVIALVKDFMEAKKPVASICHGQQILA-AAG 327
           +  I ++++ +E K P+  IC G Q+LA A G
Sbjct: 235 DYAIEMIRELLEKKIPIFGICLGHQLLALALG 266

Length = 360

>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 275 DVSGYDALVVPG-GRAPEYLA-LNEN-VIALVKDFMEAKKPVASICHGQQILAAAGV 328
           +    D L++PG G     +A L EN +   V+  +   KPV  IC G Q+L     
Sbjct: 33  EAELADKLILPGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSE 89

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196

>gnl|CDD|153227 cd03133, GATase1_ES1, Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 274 VDVSGYDALVVPGG------------RAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
           +  + +DAL+ PGG            +  +   +N  V  LV++F +A KP+ +IC    
Sbjct: 78  LKAADFDALIFPGGFGAAKNLSDFAVKGADC-TVNPEVERLVREFHQAGKPIGAICIAPA 136

Query: 322 ILAAA 326
           + A  
Sbjct: 137 LAAKI 141

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. Length = 213

>gnl|CDD|236980 PRK11780, PRK11780, isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)

Query: 274 VDVSGYDALVVPGG-----------RAPEYLALNENVIALVKDFMEAKKPVASIC 317
            D   +DAL+VPGG                  +N +V ALV+ F +A KP+  IC
Sbjct: 81  ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFIC 135

Length = 217

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 78  FDEIDPSKYDGLVIPGG-RAPEYL-----AMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
           +++     YDG+V+PGG    +YL     A    ++  VR+F+  G  +  IC+G  IL 
Sbjct: 33  YEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILV 92

Query: 132 AADVVKG 138
            A ++ G
Sbjct: 93  EAGLLPG 99

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 75  NATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAA- 132
           +   +EI     DG++I  G  P         I+ +++   +   I  IC G QL+  A 
Sbjct: 30  DTPAEEILELNPDGIIISPG--PGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAF 87

Query: 133 -ADVVKGRK 140
              V+K +K
Sbjct: 88  GGKVIKAKK 96

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG2764	247	consensus Putative transcriptional regulator DJ-1	100.0
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	100.0
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	100.0
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.97
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.97
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.97
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.97
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.97
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.97
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.96
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.96
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.96
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.96
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.96
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.96
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.96
PRK04155	287	chaperone protein HchA; Provisional	99.96
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.96
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.96
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.96
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.96
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.96
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.95
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.95
COG4977	328	Transcriptional regulator containing an amidase do	99.95
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.95
PRK04155	287	chaperone protein HchA; Provisional	99.95
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.95
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.95
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.95
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.95
COG4977	328	Transcriptional regulator containing an amidase do	99.94
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.94
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.93
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.93
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.93
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.92
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.92
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.92
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.84
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.81
PRK11249	752	katE hydroperoxidase II; Provisional	99.64
PRK11249	752	katE hydroperoxidase II; Provisional	99.54
COG3155	217	ElbB Uncharacterized protein involved in an early	99.3
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.26
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.23
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.21
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.2
COG3155	217	ElbB Uncharacterized protein involved in an early	99.14
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.09
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.08
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.08
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.06
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.04
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.91
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.82
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.76
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.75
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.73
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.7
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.67
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.64
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.61
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.54
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.47
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.47
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.46
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.45
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.42
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.41
PRK07053	234	glutamine amidotransferase; Provisional	98.32
PRK08250	235	glutamine amidotransferase; Provisional	98.32
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.31
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.3
PRK07053	234	glutamine amidotransferase; Provisional	98.3
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.29
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.28
PRK08250	235	glutamine amidotransferase; Provisional	98.23
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.18
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.17
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.15
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.14
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	98.13
PRK06490	239	glutamine amidotransferase; Provisional	98.1
PRK06490	239	glutamine amidotransferase; Provisional	98.07
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.06
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.06
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	98.06
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.04
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	98.02
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	97.99
PHA03366	1304	FGAM-synthase; Provisional	97.98
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.94
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	97.93
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.92
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.91
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.87
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	97.83
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	97.82
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.82
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.82
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.81
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.8
PRK06895	190	putative anthranilate synthase component II; Provi	97.8
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.79
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.78
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.78
PRK06895	190	putative anthranilate synthase component II; Provi	97.77
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.76
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.74
PRK09065	237	glutamine amidotransferase; Provisional	97.73
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.72
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.65
PRK05665	240	amidotransferase; Provisional	97.65
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.65
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.63
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.63
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	97.62
PRK09065	237	glutamine amidotransferase; Provisional	97.61
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.59
PRK05665	240	amidotransferase; Provisional	97.59
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.5
PRK00784	488	cobyric acid synthase; Provisional	97.49
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	97.49
PHA03366	1304	FGAM-synthase; Provisional	97.48
PRK08007	187	para-aminobenzoate synthase component II; Provisio	97.45
PRK08007	187	para-aminobenzoate synthase component II; Provisio	97.44
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.44
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.44
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.41
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	97.41
PRK06774	191	para-aminobenzoate synthase component II; Provisio	97.41
PRK07567	242	glutamine amidotransferase; Provisional	97.4
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.38
PRK06774	191	para-aminobenzoate synthase component II; Provisio	97.37
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.37
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	97.34
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.34
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.33
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	97.33
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.31
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.3
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.29
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	97.27
PRK07567	242	glutamine amidotransferase; Provisional	97.27
PRK05637	208	anthranilate synthase component II; Provisional	97.27
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.26
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	97.26
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.24
PRK05637	208	anthranilate synthase component II; Provisional	97.21
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	97.19
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	97.17
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	97.16
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.15
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.12
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.1
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	97.09
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	97.07
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.06
CHL00101	190	trpG anthranilate synthase component 2	97.05
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.05
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.04
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	97.04
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.04
PRK05670	189	anthranilate synthase component II; Provisional	97.04
PRK13566	720	anthranilate synthase; Provisional	97.03
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	97.01
PRK08857	193	para-aminobenzoate synthase component II; Provisio	97.0
PRK05670	189	anthranilate synthase component II; Provisional	97.0
CHL00101	190	trpG anthranilate synthase component 2	97.0
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	96.99
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	96.96
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	96.96
PRK00784	488	cobyric acid synthase; Provisional	96.95
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	96.95
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	96.95
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	96.95
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	96.93
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	96.92
PRK13566	720	anthranilate synthase; Provisional	96.91
PRK08857	193	para-aminobenzoate synthase component II; Provisio	96.91
PLN02335	222	anthranilate synthase	96.9
PRK00758	184	GMP synthase subunit A; Validated	96.9
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.9
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	96.9
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	96.89
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	96.86
PLN02335	222	anthranilate synthase	96.84
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.82
PRK00758	184	GMP synthase subunit A; Validated	96.81
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	96.8
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	96.77
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	96.73
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	96.72
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	96.72
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	96.65
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	96.64
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	96.63
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	96.59
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	96.56
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	96.46
TIGR00313	475	cobQ cobyric acid synthase CobQ.	96.44
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	96.43
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	96.43
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	96.41
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	96.3
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	96.15
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	96.13
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.1
PLN02347	536	GMP synthetase	96.07
PLN02347	536	GMP synthetase	96.07
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.03
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	95.81
TIGR00313	475	cobQ cobyric acid synthase CobQ.	95.79
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	95.79
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	95.77
PRK00074	511	guaA GMP synthase; Reviewed	95.72
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	95.7
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	95.61
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	95.6
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	95.53
PRK00074	511	guaA GMP synthase; Reviewed	95.37
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	95.28
COG3442	250	Predicted glutamine amidotransferase [General func	95.26
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	95.2
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	95.17
PLN02327	557	CTP synthase	95.14
PRK06186	229	hypothetical protein; Validated	95.08
PRK05380	533	pyrG CTP synthetase; Validated	95.01
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	94.98
PRK06186	229	hypothetical protein; Validated	94.93
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	94.71
PRK05380	533	pyrG CTP synthetase; Validated	94.68
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	94.68
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	94.55
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	94.5
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	94.49
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	94.46
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	94.26
COG3442	250	Predicted glutamine amidotransferase [General func	94.25
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	94.24
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	94.11
PRK05368	302	homoserine O-succinyltransferase; Provisional	94.05
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	93.97
COG4635	175	HemG Flavodoxin [Energy production and conversion	93.68
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	93.6
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	93.58
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	93.53
PLN02889	918	oxo-acid-lyase/anthranilate synthase	93.42
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	93.24
COG2071	243	Predicted glutamine amidotransferases [General fun	93.15
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	93.02
COG2071	243	Predicted glutamine amidotransferases [General fun	93.01
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	92.84
PLN02327	557	CTP synthase	92.78
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	92.58
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	92.51
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	92.43
PLN02889	918	oxo-acid-lyase/anthranilate synthase	92.32
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	92.13
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	92.08
PRK05368	302	homoserine O-succinyltransferase; Provisional	91.98
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	91.48
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	91.43
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	90.39
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	90.01
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	89.64
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	88.64
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	87.23
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	87.2
COG4285	253	Uncharacterized conserved protein [Function unknow	86.47
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	85.85
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	85.34
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	84.74
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	84.04
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	83.98
COG4285	253	Uncharacterized conserved protein [Function unknow	83.38
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	82.62
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	82.52
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	82.16
COG4635	175	HemG Flavodoxin [Energy production and conversion	81.94
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	80.7
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	80.5
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	80.41
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	80.31

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=100.00  E-value=8.2e-35  Score=246.32  Aligned_cols=240  Identities=42%  Similarity=0.657  Sum_probs=195.3

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++++.++..++.+.+|+..|.++|++.|..|+++++++..               .+.++.+.++.+|..+.|.-.+.||
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yD   69 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYD   69 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhcccccc
Confidence            4689999999999999999999999999999999998765               5778888889999988887778999


Q ss_pred             EEEEcCC-CCcccccCCHHHHHHHHHHHhCCCeEEEEchhh-HHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           88 GLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        88 ~iiipGG-~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      +|+|||| .|++.|.+.+.+.+.++++.+.+++|++||+|+ .+|+..|++.|+++|+|+..++.|.+-+..|++..   
T Consensus        70 viilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~---  146 (247)
T KOG2764|consen   70 VIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR---  146 (247)
T ss_pred             EEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC---
Confidence            9999999 688889999999999999999999999999999 67777788889999999999999998777777766   


Q ss_pred             eeeecCceEecCCCCChHHHHHHHHHHhcCCcCCC-CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCC
Q 016237          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS-DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSC  244 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~~-~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~  244 (392)
                       +|.|||++||+|+..+.+|++.++++|.+++... -.+...+++.-                      +++..+..+..
T Consensus       147 -vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka~~v~~~l~l~~~~----------------------v~~~~~~~e~~  203 (247)
T KOG2764|consen  147 -VVKDGNLITSRGPGTAFEFALKLVEQLGGKEKANEVKKPLSLLFLP----------------------VAPEKKAGEAC  203 (247)
T ss_pred             -eEEeCcEEeccCCCchHHHHHHHHHHhcCchhhhhhhccceeeccc----------------------cCCCchhccee
Confidence             8999999999999999999999999999998553 22333333211                      33333333333


Q ss_pred             CCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCC
Q 016237          245 PTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGR  288 (392)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~  288 (392)
                      ...+++++..+....+.|........++|+..+.||+|++|||.
T Consensus       204 a~~~~~~~~~~v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  204 ATADHDLEGRQVPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             cceehhhhcCcceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence            33344444333444455666666667999888999999999984

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=100.00  E-value=5.5e-32  Score=231.48  Aligned_cols=165  Identities=42%  Similarity=0.723  Sum_probs=151.7

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      ||+|+++|||+..|+..|+++|+++|++++++|++++                .+.++.|.++.++.+++++++.+||+|
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~v   64 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG----------------TTVGKHGYSVTVDATIDEVNPEEYDAL   64 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC----------------ceeccCCceeeccCChhhCCHHHCcEE
Confidence            6999999999999999999999999999999998876                477888999999999998877789999


Q ss_pred             EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeee
Q 016237           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV  169 (392)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~  169 (392)
                      +||||.+...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.+.+.   +|.
T Consensus        65 vv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~---~v~  141 (166)
T TIGR01382        65 VIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEV---VVV  141 (166)
T ss_pred             EECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCC---EEE
Confidence            99999875555678999999999999999999999999999999999999999999999999988778877443   899


Q ss_pred             cCceEecCCCCChHHHHHHHHHHh
Q 016237          170 DGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       170 dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                      |||+|||+|+.++.+|+..+++.|
T Consensus       142 dg~iiT~~~~~~~~~fa~~~~~~l  165 (166)
T TIGR01382       142 DGNLVTSRVPDDLPAFNREFLKLL  165 (166)
T ss_pred             ECCEEEeCCcccHHHHHHHHHHHh
Confidence            999999999999999999999976

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=9.7e-32  Score=232.81  Aligned_cols=180  Identities=54%  Similarity=0.985  Sum_probs=152.5

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      ||+|+++||++..|+..|+++|+++|++|+++|+++++.++.........+.+.+.+..|..+.++.+++++++.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            69999999999999999999999999999999999875322211111111222455567889999999999877789999


Q ss_pred             EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeee
Q 016237           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV  169 (392)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~  169 (392)
                      +||||+++..+..++.+.+||+++++++++|++||+|+++|+++|+|+||++|+||...+.+++.+..+.+..    ++.
T Consensus        81 iv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~----~v~  156 (180)
T cd03169          81 VIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG----VVV  156 (180)
T ss_pred             EEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeecc----EEE
Confidence            9999987655567889999999999999999999999999999999999999999999999998666655433    889


Q ss_pred             cCceEecCCCCChHHHHHHHHHHh
Q 016237          170 DGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       170 dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                      |||+|||+|+.+..+|+..+++.|
T Consensus       157 D~~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         157 DGNLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             ECCEEEecCCchHHHHHHHHHHhC
Confidence            999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=1.9e-31  Score=227.98  Aligned_cols=162  Identities=40%  Similarity=0.691  Sum_probs=149.0

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCC-CCCCCCCCccccCCCCcccccccccC-ccccCcCcCCCCCCCcc
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPSKYD   87 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~D   87 (392)
                      ||+|+++|||+..|+..+.+.|+++||+++++|++ ++                +++++.|. ++.++..+++.++.+||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------------~v~~~~g~~~i~~d~~~~~~~~~~~D   64 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG----------------EIQGKHGYDTVTVDLTIADVDADDYD   64 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc----------------ccccCcCceeecCCCChHHCCHHHCC
Confidence            69999999999999999999999999999999998 55                57888899 99999999988777899


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~  167 (392)
                      +|+||||++...+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+.+..    +
T Consensus        65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~  140 (165)
T cd03134          65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----V  140 (165)
T ss_pred             EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----E
Confidence            999999986655667899999999999999999999999999999999999999999999999998777776544    8


Q ss_pred             eecCceEecCCCCChHHHHHHHHH
Q 016237          168 VVDGNIITGATYEGHPEFIRLFLK  191 (392)
Q Consensus       168 v~dg~iiT~~g~~s~~~~~~~~i~  191 (392)
                      +.|||+|||+|+.++.+|+..+++
T Consensus       141 v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134         141 VVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             EEECCEEEecCcchHHHHHHHHHh
Confidence            899999999999999999999886

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.97  E-value=2.4e-31  Score=226.90  Aligned_cols=162  Identities=36%  Similarity=0.589  Sum_probs=144.0

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+|+++|||+..|+..++++|+.+||+++++|+++++               .+.++.|..+.++..+++.++.+||+|+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~li   65 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIV   65 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEE
Confidence            6899999999999999999999999999999999874               2345789999999999988777999999


Q ss_pred             EcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeee
Q 016237           91 IPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV  169 (392)
Q Consensus        91 ipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~  169 (392)
                      ||||. ++..+.+++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+  .+..+.+. .   +|.
T Consensus        66 ipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~-~---~v~  139 (163)
T cd03135          66 IPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDE-P---VVV  139 (163)
T ss_pred             ECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecC-C---EEE
Confidence            99998 55556789999999999999999999999999999999999999999998877655  34445544 3   899


Q ss_pred             cCceEecCCCCChHHHHHHHHHHh
Q 016237          170 DGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       170 dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                      |||++||+|+.++.|+++++++++
T Consensus       140 dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135         140 DGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             ECCEEEcCCcccHHHHHHHHHHhC
Confidence            999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=6.4e-31  Score=224.91  Aligned_cols=166  Identities=43%  Similarity=0.706  Sum_probs=152.4

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      |+.++++++++..|+..++++|+++||+++++|+++++                +.++.|..+.++..+++.++.+||+|
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~----------------v~~~~g~~i~~~~~~~~~~~~~~D~v   64 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGT----------------TVGKHGYSVTVDATIDEVNPEEYDAL   64 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCc----------------eeccCCceeeccCChhhCCHHHCcEE
Confidence            58899999999999999999999999999999988765                66778888999989988877789999


Q ss_pred             EEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEE
Q 016237          283 VVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT  362 (392)
Q Consensus       283 iipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~  362 (392)
                      +||||.+...+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.++..++++.+.+   .+|.
T Consensus        65 vv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v~  141 (166)
T TIGR01382        65 VIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVV  141 (166)
T ss_pred             EECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEEE
Confidence            9999987655677899999999999999999999999999999999999999999999999998899998744   5999


Q ss_pred             cCCeEEccCCCChHHHHHHHHHHhc
Q 016237          363 DGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       363 dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      |||+|||+|+.+..+|+.++++.|.
T Consensus       142 dg~iiT~~~~~~~~~fa~~~~~~l~  166 (166)
T TIGR01382       142 DGNLVTSRVPDDLPAFNREFLKLLG  166 (166)
T ss_pred             ECCEEEeCCcccHHHHHHHHHHHhC
Confidence            9999999999999999999999874

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.97  E-value=7e-31  Score=224.01  Aligned_cols=162  Identities=31%  Similarity=0.524  Sum_probs=147.0

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV  283 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi  283 (392)
                      +++++++++...|+..++++|+.+||+++++|+++++               ...++.|..+.++..+++.+..+||+|+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~li   65 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIV   65 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEE
Confidence            5789999999999999999999999999999999875               1234678889999999988778999999


Q ss_pred             EcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEE
Q 016237          284 VPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT  362 (392)
Q Consensus       284 ipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~  362 (392)
                      ||||. +...+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+  +++++.++    .+|.
T Consensus        66 ipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~----~~v~  139 (163)
T cd03135          66 IPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDE----PVVV  139 (163)
T ss_pred             ECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecC----CEEE
Confidence            99998 55557789999999999999999999999999999999999999999999988766  88998876    4999


Q ss_pred             cCCeEEccCCCChHHHHHHHHHHh
Q 016237          363 DGNLVSGAAWPGHPEFISQLMALL  386 (392)
Q Consensus       363 dg~lvT~~g~~~~~~~~~~li~~l  386 (392)
                      ||+++|++|+.++.+|++++|++|
T Consensus       140 dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135         140 DGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             ECCEEEcCCcccHHHHHHHHHHhC
Confidence            999999999999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.97  E-value=8e-31  Score=227.16  Aligned_cols=168  Identities=30%  Similarity=0.481  Sum_probs=146.9

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEE--ECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ||+|+++|||+..|+..|+++|+.+|+++++  +|++++.               +++++.|.++.++.++++.+..+||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D   65 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL---------------PVKGSRGVKILADASLEDVDLEEFD   65 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc---------------ceEcCCCCEEeCCCCHHHCCcccCC
Confidence            6999999999999999999999999987776  9988642               4788999999999999987667899


Q ss_pred             EEEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (392)
Q Consensus        88 ~iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~  166 (392)
                      +|+||||.. ...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+.+.  .+....   .
T Consensus        66 ~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~~---~  140 (179)
T TIGR01383        66 AIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVNE---A  140 (179)
T ss_pred             EEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCCC---C
Confidence            999999964 4445678999999999999999999999999999999999999999999887765542  332233   3


Q ss_pred             eeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          167 CVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      ++.|||++||+|+.++.++++++++.+.++.
T Consensus       141 ~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~  171 (179)
T TIGR01383       141 VVVDGNIITSRGPGTAIEFALALVELLCGKE  171 (179)
T ss_pred             EEEeCCEEECCChhhHHHHHHHHHHHhcCHH
Confidence            8999999999999999999999999988765

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.97  E-value=4.9e-30  Score=222.11  Aligned_cols=180  Identities=61%  Similarity=1.053  Sum_probs=151.3

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      |++++++++++..|+..|+++|+++|++++++|+++++.........+..+...+....|..+.++..+++....+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            68899999999999999999999999999999999874311111110111122233456778888988998777789999


Q ss_pred             EEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEE
Q 016237          283 VVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFT  362 (392)
Q Consensus       283 iipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~  362 (392)
                      +||||+++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.+.++.++    .++.
T Consensus        81 iv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~----~~v~  156 (180)
T cd03169          81 VIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVV  156 (180)
T ss_pred             EEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeec----cEEE
Confidence            999998766666789999999999999999999999999999999999999999999999998877777654    4899


Q ss_pred             cCCeEEccCCCChHHHHHHHHHHh
Q 016237          363 DGNLVSGAAWPGHPEFISQLMALL  386 (392)
Q Consensus       363 dg~lvT~~g~~~~~~~~~~li~~l  386 (392)
                      |||+|||+|+.+..+|+.++++.|
T Consensus       157 D~~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         157 DGNLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             ECCEEEecCCchHHHHHHHHHHhC
Confidence            999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.97  E-value=5.2e-30  Score=222.07  Aligned_cols=167  Identities=28%  Similarity=0.405  Sum_probs=146.6

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEE--EcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDA--VCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+.++++++++..|+..++++|+.+|+++++  +|++++.               .++++.|..+.++..+++.+.++||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D   65 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL---------------PVKGSRGVKILADASLEDVDLEEFD   65 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc---------------ceEcCCCCEEeCCCCHHHCCcccCC
Confidence            6889999999999999999999999977776  9988651               2678889999999889987777999


Q ss_pred             EEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCce
Q 016237          281 ALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDR  359 (392)
Q Consensus       281 ~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~  359 (392)
                      +|+||||.. ...+..++.+.+||+++++++++|+++|+|+++||++|||+||++|+||.+.+.+  +..++..+.   .
T Consensus        66 ~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~--~~~~~~~~~---~  140 (179)
T TIGR01383        66 AIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKL--LNGNYSVNE---A  140 (179)
T ss_pred             EEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhc--cCCceeCCC---C
Confidence            999999874 4446778999999999999999999999999999999999999999999988765  444664344   5


Q ss_pred             EEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          360 CFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       360 vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      ++.||+++||+|+.++.+|++++|+++.|+
T Consensus       141 ~v~dg~i~T~~g~~a~~d~~l~li~~~~g~  170 (179)
T TIGR01383       141 VVVDGNIITSRGPGTAIEFALALVELLCGK  170 (179)
T ss_pred             EEEeCCEEECCChhhHHHHHHHHHHHhcCH
Confidence            899999999999999999999999999875

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.97  E-value=4.3e-30  Score=224.13  Aligned_cols=167  Identities=20%  Similarity=0.281  Sum_probs=151.3

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP   83 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (392)
                      |+|+++|||+..|+..+.++|+.+|       |+++++|++++                +++++.|+++.+|..+++  .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~v~~d~~~~~--~   62 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG----------------PVRSSSGLSLVADAGLDA--L   62 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC----------------ceeecCCcEEEcCcCccc--c
Confidence            6899999999999999999999988       99999999876                588899999999998884  3


Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPE  162 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~  162 (392)
                      .+||+|+||||.+......++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ +|...+..+
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~  142 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD  142 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC
Confidence            4899999999987665678999999999999999999999999999999999999999999999999998 677766543


Q ss_pred             CcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       163 ~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      .  .+++|||++||+|+.++.|+++++++++.++.
T Consensus       143 ~--~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~  175 (187)
T cd03137         143 V--LYVDDGNVWTSAGVTAGIDLCLHLVREDLGAA  175 (187)
T ss_pred             C--EEEecCCEEEcccHHHHHHHHHHHHHHHhCHH
Confidence            2  38899999999999999999999999988776

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=1.1e-29  Score=216.97  Aligned_cols=162  Identities=35%  Similarity=0.650  Sum_probs=148.4

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCC-CCCCCCCCCcccCCCCCccccCCCCC-cccccccccCCCCCCcC
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPK-KKAGDSCPTAVHDFEGDQTYSEKPGH-NFTLTANFESVDVSGYD  280 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~D  280 (392)
                      +++++++++++..|+..+.++|++++|+++++|++ +++                ++++.|. .+.++..+++....+||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~----------------v~~~~g~~~i~~d~~~~~~~~~~~D   64 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGE----------------IQGKHGYDTVTVDLTIADVDADDYD   64 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcc----------------cccCcCceeecCCCChHHCCHHHCC
Confidence            58899999999999999999999999999999998 654                6777888 89999889887767899


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceE
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC  360 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~v  360 (392)
                      +|+||||++...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.++..+.++.++.    +
T Consensus        65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~  140 (165)
T cd03134          65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----V  140 (165)
T ss_pred             EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----E
Confidence            999999987655678899999999999999999999999999999999999999999999999988788887654    8


Q ss_pred             EEcCCeEEccCCCChHHHHHHHHH
Q 016237          361 FTDGNLVSGAAWPGHPEFISQLMA  384 (392)
Q Consensus       361 v~dg~lvT~~g~~~~~~~~~~li~  384 (392)
                      +.|||+|||+|+.++.+|+..+++
T Consensus       141 v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134         141 VVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             EEECCEEEecCcchHHHHHHHHHh
Confidence            999999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.96  E-value=1.9e-29  Score=220.01  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=150.3

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV  276 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~  276 (392)
                      +.++++++++..|+..+.|+|+.++       |+++++|+++++                ++++.|.++.+|..+++  .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~----------------v~~~~g~~v~~d~~~~~--~   62 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGP----------------VRSSSGLSLVADAGLDA--L   62 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCc----------------eeecCCcEEEcCcCccc--c
Confidence            4689999999999999999999987       999999998775                77888999999988874  4


Q ss_pred             CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCC
Q 016237          277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEP  354 (392)
Q Consensus       277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~  354 (392)
                      ++||+|+||||.+......++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.++  +|++.+..+
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~  142 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD  142 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC
Confidence            589999999998766577899999999999999999999999999999999999999999999998887  488888766


Q ss_pred             CCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          355 DPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       355 ~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      .   .++.||+++||+|+.++.|+++++|+++.|+
T Consensus       143 ~---~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~  174 (187)
T cd03137         143 V---LYVDDGNVWTSAGVTAGIDLCLHLVREDLGA  174 (187)
T ss_pred             C---EEEecCCEEEcccHHHHHHHHHHHHHHHhCH
Confidence            5   5899999999999999999999999998875

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.96  E-value=1.3e-29  Score=220.63  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=148.3

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP   83 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (392)
                      |+|+++|||+..|+..++|+|+.+|       |+++++|.+++                ++.++.|.++.++..+.+.  
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--   62 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA----------------PVTSSNGLRVAPDAALEDA--   62 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC----------------eeecCCCcEEeCCcccccc--
Confidence            6899999999999999999999876       89999999876                5888999999999988754  


Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPE  162 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~  162 (392)
                      .+||+|+||||.+.. +..++.+++||++++++++.|+++|+|+++|+++|+|+||++|+||...+.+++ ++...+...
T Consensus        63 ~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~  141 (185)
T cd03136          63 PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD  141 (185)
T ss_pred             CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC
Confidence            489999999998765 678999999999999999999999999999999999999999999999999987 655444333


Q ss_pred             CcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       163 ~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                         .+|.|||++|++|+.+++++++++++++.++.
T Consensus       142 ---~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~  173 (185)
T cd03136         142 ---LFEIDGDRLTCAGGTAALDLMLELIARDHGAA  173 (185)
T ss_pred             ---eEEEcCCEEEeccHHHHHHHHHHHHHHHhCHH
Confidence               38899999999999999999999999988876

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=5.8e-30  Score=222.59  Aligned_cols=166  Identities=24%  Similarity=0.311  Sum_probs=149.4

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCC-----CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      |+|+++|||+..|+..+.++|+.+|     |+++++|++++                .++++.|.++.++.++.+..  +
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~~--~   62 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG----------------PVSSRSGLTVLPDTSFADPP--D   62 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC----------------ceEeCCCCEEcCCcccccCC--C
Confidence            6899999999999999999999999     99999999876                58889999999999888644  8


Q ss_pred             ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      ||+|+||||.++..+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+...+   
T Consensus        63 ~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~---  139 (183)
T cd03139          63 LDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDA---  139 (183)
T ss_pred             CCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCC---
Confidence            99999999987665678999999999999999999999999999999999999999999999999998433332222   


Q ss_pred             eeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      .++.|||++||+|+.++.++++++++++.++.
T Consensus       140 ~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~  171 (183)
T cd03139         140 RWVVDGNIWTSGGVSAGIDMALALVARLFGEE  171 (183)
T ss_pred             EEEecCCEEEcCcHHHHHHHHHHHHHHHhCHH
Confidence            48999999999999999999999999988776

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.96  E-value=2.2e-29  Score=224.24  Aligned_cols=175  Identities=23%  Similarity=0.344  Sum_probs=140.8

Q ss_pred             CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCC--CCc-ccc----cccccCccccCcCcCCCCCCCccEEE
Q 016237           18 YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS--TGH-QTY----SETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        18 g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~--~~~-~~~----~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |++..|+..|+++|+++|++|+++|+.+.+ ..+..++...  ... ..+    ..+.+.++.++.++++++.++||+|+
T Consensus        21 G~~~~E~~~p~~~l~~aG~~VdiaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          21 GVFFSEALHPFNVFREAGFEVDFVSETGTF-GFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             ccCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            788999999999999999999999998642 1111111100  000 011    23455678889999999999999999


Q ss_pred             EcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-------cccCCeeEecCCCc---------------
Q 016237           91 IPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV---------------  147 (392)
Q Consensus        91 ipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-------gll~g~~~T~~~~~---------------  147 (392)
                      ||||+++. .+.+++.++++|+++++++|+|++||||+++|+.+       ++++||++|+|++.               
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~  179 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN  179 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence            99999764 48999999999999999999999999999999987       89999999999865               


Q ss_pred             ----HHHHHHCCCeEEcCC--CcceeeecCceEecCCCCChHHHHHHHHHHh
Q 016237          148 ----KPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       148 ----~~~l~~~~~~~~~~~--~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                          ++.+++.|+.|...+  .+..+|+|||+||++++.|+.++++.+++.|
T Consensus       180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                455666789988642  2234889999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.96  E-value=5.4e-29  Score=218.65  Aligned_cols=166  Identities=23%  Similarity=0.276  Sum_probs=147.8

Q ss_pred             EEEEecCCCCccchHHHHHHHHhC------------CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCc
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAF------------GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF   78 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~a------------g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (392)
                      |+|+++|||...++..++|+|+.+            +|+++++|.+++                ++.++.|.++.+|.++
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~----------------~v~s~~g~~i~~d~~~   64 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG----------------PVLLAGGILILPDATL   64 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC----------------eeecCCCceecccccc
Confidence            689999999999999999999963            489999999876                5788899999999988


Q ss_pred             CCCCCCCccEEEEcCCCCc-c--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-C
Q 016237           79 DEIDPSKYDGLVIPGGRAP-E--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-A  154 (392)
Q Consensus        79 ~~~~~~~~D~iiipGG~~~-~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~  154 (392)
                      ++.  .+||+|+||||.+. .  .+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++ +
T Consensus        65 ~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~  142 (195)
T cd03138          65 ADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRF  142 (195)
T ss_pred             ccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHC
Confidence            864  48999999998754 3  4678899999999999999999999999999999999999999999999999998 6


Q ss_pred             CCeEEcC-CCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          155 GASWIEP-ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       155 ~~~~~~~-~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +...... .   .++.|||++||+|+.+++++++++++.+.++.
T Consensus       143 p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~  183 (195)
T cd03138         143 PKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGPE  183 (195)
T ss_pred             CCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCHH
Confidence            6554433 3   48999999999999999999999999988776

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.96  E-value=7.5e-29  Score=215.87  Aligned_cols=163  Identities=18%  Similarity=0.156  Sum_probs=146.9

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV  276 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~  276 (392)
                      +.+++++++...++..++|+|+.++       |+++++|.++++                +.+..|..+.++..+.+.  
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~~----------------v~~~~g~~i~~d~~~~~~--   62 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGAP----------------VTSSNGLRVAPDAALEDA--   62 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCCe----------------eecCCCcEEeCCcccccc--
Confidence            5789999999999999999999875       899999998765                677888899999888653  


Q ss_pred             CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCC
Q 016237          277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEP  354 (392)
Q Consensus       277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~  354 (392)
                      .+||+|+||||.+.. +..++.+++||++++++++.|+++|+|+++|+++|+|+||++|+||...+.++  +|++++.+.
T Consensus        63 ~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~  141 (185)
T cd03136          63 PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD  141 (185)
T ss_pred             CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC
Confidence            589999999998765 67899999999999999999999999999999999999999999999998887  578888544


Q ss_pred             CCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          355 DPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       355 ~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                          .+|.||+++|++|+.++.||++++++++.|+
T Consensus       142 ----~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~  172 (185)
T cd03136         142 ----LFEIDGDRLTCAGGTAALDLMLELIARDHGA  172 (185)
T ss_pred             ----eEEEcCCEEEeccHHHHHHHHHHHHHHHhCH
Confidence                4899999999999999999999999999875

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=4.4e-29  Score=214.05  Aligned_cols=163  Identities=27%  Similarity=0.432  Sum_probs=141.2

Q ss_pred             EEEEecCCCCccchHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      |+++++|+|++.|+..+++.|+++ +|++++++++++                ++.++.|+++.++.++++.+..+||+|
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~----------------~v~ss~g~~i~~~~~~~~~~~~~~D~l   64 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE----------------PVTSIGGLRVVPDYSLDDLPPEDYDLL   64 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC----------------eeEecCCeEEccccchhHCCHhHccEE
Confidence            689999999999999999999997 899999999886                588999999999999998765689999


Q ss_pred             EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCC-cHHHHHH-C-CCeEEcCCCcce
Q 016237           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIA-A-GASWIEPETMAA  166 (392)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~-~~~~l~~-~-~~~~~~~~~~~~  166 (392)
                      +||||+.... ..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||. ..+.++. + +..+...+.   
T Consensus        65 ~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~---  140 (170)
T cd03140          65 ILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQ---  140 (170)
T ss_pred             EEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCc---
Confidence            9999976443 4778999999999999999999999999999999999999999985 4555554 2 444443343   


Q ss_pred             eeecCceEecCCCCChHHHHHHHHHHhc
Q 016237          167 CVVDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                      +++|||+|||+| .++.|+++++++.+.
T Consensus       141 ~v~dg~iiT~~g-~a~~d~al~~i~~l~  167 (170)
T cd03140         141 AVSDGNLITANG-TAPVEFAAEILRALD  167 (170)
T ss_pred             EEEcCCEEECCC-cCHHHHHHHHHHHcC
Confidence            899999999987 558999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=5e-29  Score=216.70  Aligned_cols=165  Identities=24%  Similarity=0.273  Sum_probs=148.3

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcC-----CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALE-----CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      +.++++++++..++..+.++|+.+|     |+++++|+++++                ++++.|..+.++..+++.  ++
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~----------------v~~~~g~~i~~d~~~~~~--~~   62 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGP----------------VSSRSGLTVLPDTSFADP--PD   62 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCc----------------eEeCCCCEEcCCcccccC--CC
Confidence            4789999999999999999999999     999999998875                778889999999888764  48


Q ss_pred             cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237          279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID  358 (392)
Q Consensus       279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~  358 (392)
                      ||+|+||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|+|+||++|+||...+.++..+.++..+.   
T Consensus        63 ~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~---  139 (183)
T cd03139          63 LDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDA---  139 (183)
T ss_pred             CCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCC---
Confidence            99999999987766788999999999999999999999999999999999999999999999999886555542223   


Q ss_pred             eEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          359 RCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       359 ~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      .++.||+++||+|+.++.+|++++|+++.|+
T Consensus       140 ~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~  170 (183)
T cd03139         140 RWVVDGNIWTSGGVSAGIDMALALVARLFGE  170 (183)
T ss_pred             EEEecCCEEEcCcHHHHHHHHHHHHHHHhCH
Confidence            5899999999999999999999999998875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.96  E-value=4.1e-29  Score=213.62  Aligned_cols=158  Identities=25%  Similarity=0.351  Sum_probs=136.9

Q ss_pred             EecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237           14 LCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus        14 ll~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |++|||...|++.+.|+|+.+|       |++++++++++                ++.++.|+++.++..+++  ..++
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~----------------~v~~s~g~~i~~~~~~~~--~~~~   62 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG----------------PVTSSSGLRIQPDGSLDD--APDF   62 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC----------------EEEBTTSEEEEESEETCC--CSCC
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC----------------eeeecCCeEEEeccChhh--cccC
Confidence            6899999999999999999999       99999999886                588999999999999998  4589


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCCCcc
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMA  165 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~~~~  165 (392)
                      |+|+||||........++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ ++...+..+.  
T Consensus        63 D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~--  140 (166)
T PF13278_consen   63 DILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ--  140 (166)
T ss_dssp             SEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS--
T ss_pred             CEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC--
Confidence            9999999988444577899999999999999999999999999999999999999999999999998 6777655332  


Q ss_pred             eeeecCceEecCCCCChHHHHHHHHH
Q 016237          166 ACVVDGNIITGATYEGHPEFIRLFLK  191 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~s~~~~~~~~i~  191 (392)
                      .+|.|||++||+|..+++|+++++|+
T Consensus       141 ~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  141 LFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             EEEECCCeEEecHHHHHHHHHHHHhC
Confidence            39999999999999999999999986

...

>PRK04155 chaperone protein HchA; Provisional

Probab=99.96  E-value=8.6e-29  Score=226.05  Aligned_cols=189  Identities=19%  Similarity=0.265  Sum_probs=148.8

Q ss_pred             CCEEEEEec--------------CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCc-ccccccccCcc
Q 016237            8 KRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNF   72 (392)
Q Consensus         8 ~~kI~ill~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~   72 (392)
                      .|||+|++.              .|+++.|+..|+++|+++|++|+++|+++++...+.|++...... .......+.++
T Consensus        49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l  128 (287)
T PRK04155         49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKF  128 (287)
T ss_pred             CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhc
Confidence            579999996              378889999999999999999999999887654455543211100 00011223344


Q ss_pred             ccCcCcCCC----C--CCCccEEEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc------ccCCe
Q 016237           73 ALNATFDEI----D--PSKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGR  139 (392)
Q Consensus        73 ~~~~~~~~~----~--~~~~D~iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag------ll~g~  139 (392)
                      ..+..++++    .  +++||+||||||+++. .+++++.++++|+++++++|+|++||||+++|..++      +++||
T Consensus       129 ~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~Gk  208 (287)
T PRK04155        129 KQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGY  208 (287)
T ss_pred             cCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCCC
Confidence            544444433    3  6799999999999864 489999999999999999999999999999999998      99999


Q ss_pred             eEecCCCc-------------------HHHHHHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCC
Q 016237          140 KCTAYPPV-------------------KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (392)
Q Consensus       140 ~~T~~~~~-------------------~~~l~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~  196 (392)
                      ++|+|+..                   ++.|++.|+.+++.+....+|+||||||++|+.++.++++.+++.|...
T Consensus       209 kvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~  284 (287)
T PRK04155        209 SICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA  284 (287)
T ss_pred             EEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence            99998865                   5567888999998643334999999999999999999999999887543

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.96  E-value=9e-29  Score=220.33  Aligned_cols=177  Identities=28%  Similarity=0.463  Sum_probs=144.1

Q ss_pred             CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCccc-c---cccccCccccCcCcCCCCCCCccEEEEc
Q 016237           17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT-Y---SETRGHNFALNATFDEIDPSKYDGLVIP   92 (392)
Q Consensus        17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~~~~~~~~~~~~~~~~D~iiip   92 (392)
                      +|++..|+..|+++|+++|++|+++|+.+++...+.+++........ .   ....+..+.++..++++++++||+|+||
T Consensus        18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ip   97 (221)
T cd03141          18 TGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIP   97 (221)
T ss_pred             CccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEEC
Confidence            79999999999999999999999999987653333222221111100 0   1245667889999999998899999999


Q ss_pred             CCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc------ccCCeeEecCCCcH---------------HH
Q 016237           93 GGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PV  150 (392)
Q Consensus        93 GG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag------ll~g~~~T~~~~~~---------------~~  150 (392)
                      ||+++. .+..++.+++||+++++++++|++||+|+++|+++|      +|+||++|+||...               +.
T Consensus        98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~  177 (221)
T cd03141          98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDE  177 (221)
T ss_pred             CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHH
Confidence            998754 377899999999999999999999999999999999      79999999998754               44


Q ss_pred             HHHCCCeEEcCC-CcceeeecCceEecCCCCChHHHHHHHHHHh
Q 016237          151 LIAAGASWIEPE-TMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       151 l~~~~~~~~~~~-~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                      +++.|+.|.+.. .+..+|+|+|+||++|+.++.++++.+++.|
T Consensus       178 l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         178 LKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence            777788888643 1234899999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.96  E-value=1.7e-28  Score=215.49  Aligned_cols=165  Identities=22%  Similarity=0.207  Sum_probs=147.8

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhc------------CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccc
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQAL------------ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANF  271 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~------------~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  271 (392)
                      +.+++++++...+++.++|+|+.+            +|+++++|+++++                +.++.|..+.+|..+
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~~----------------v~s~~g~~i~~d~~~   64 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGGP----------------VLLAGGILILPDATL   64 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCCe----------------eecCCCceecccccc
Confidence            578999999999999999999964            4899999998775                677889999999877


Q ss_pred             cCCCCCCcCEEEEcCCCCh-h--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--H
Q 016237          272 ESVDVSGYDALVVPGGRAP-E--YLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--L  346 (392)
Q Consensus       272 ~~~~~~~~D~viipgg~~~-~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~  346 (392)
                      ++.  ++||+|+||||.+. .  .+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||.....++  +
T Consensus        65 ~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~  142 (195)
T cd03138          65 ADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRF  142 (195)
T ss_pred             ccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHC
Confidence            754  58999999998764 3  467899999999999999999999999999999999999999999999998887  5


Q ss_pred             cCCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          347 AGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       347 ~~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      |++.+.++.   .++.||+++|++|+.++.++++++|+++.|+
T Consensus       143 p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~  182 (195)
T cd03138         143 PKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGP  182 (195)
T ss_pred             CCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCH
Confidence            788888755   6999999999999999999999999998875

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.96  E-value=1.1e-28  Score=211.11  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=136.9

Q ss_pred             EeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          207 LCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       207 ll~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      ++++++...+++.++|+|+.++       |+++++|+++++                +.++.|..+.++..+++  ..++
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~~----------------v~~s~g~~i~~~~~~~~--~~~~   62 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGGP----------------VTSSSGLRIQPDGSLDD--APDF   62 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSCE----------------EEBTTSEEEEESEETCC--CSCC
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCCe----------------eeecCCeEEEeccChhh--cccC
Confidence            5799999999999999999998       999999998775                78889999999999988  4589


Q ss_pred             CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCCCCC
Q 016237          280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEPDPI  357 (392)
Q Consensus       280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~~~~  357 (392)
                      |+|+||||........++.+.+||++++++++.|+++|+|+++||++|||+||++|+||...+.++  +|..++..+.  
T Consensus        63 D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~--  140 (166)
T PF13278_consen   63 DILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ--  140 (166)
T ss_dssp             SEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS--
T ss_pred             CEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC--
Confidence            999999998855567889999999999999999999999999999999999999999999999988  6778887555  


Q ss_pred             ceEEEcCCeEEccCCCChHHHHHHHHH
Q 016237          358 DRCFTDGNLVSGAAWPGHPEFISQLMA  384 (392)
Q Consensus       358 ~~vv~dg~lvT~~g~~~~~~~~~~li~  384 (392)
                       .+|.||+++||+|..++.|+++++||
T Consensus       141 -~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  141 -LFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             -SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             -EEEECCCeEEecHHHHHHHHHHHHhC
Confidence             69999999999999999999999996

...

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.96  E-value=2.1e-28  Score=231.44  Aligned_cols=169  Identities=21%  Similarity=0.294  Sum_probs=150.9

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCC
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE   80 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (392)
                      +++|+|+++|||+..|+..+.|+|+.++       |+|+++|.+++                +++++.|+++.+|..+++
T Consensus         9 ~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~----------------~v~ss~g~~i~~d~~~~~   72 (322)
T PRK09393          9 NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG----------------PLRAAGGITVVADGGLEL   72 (322)
T ss_pred             ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC----------------ceEeCCCcEEeCCCCccc
Confidence            5799999999999999999999997653       68999999876                588999999999999986


Q ss_pred             CCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEE
Q 016237           81 IDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI  159 (392)
Q Consensus        81 ~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~  159 (392)
                      .  ++||+||||||.+... ..++.+.+||+++++++++|++||+|+++||++|+|+|+++|+||...+.+++ +|...+
T Consensus        73 ~--~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~  149 (322)
T PRK09393         73 L--DRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRV  149 (322)
T ss_pred             c--CCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEE
Confidence            4  4899999999976543 45899999999999999999999999999999999999999999999999987 787776


Q ss_pred             cCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       160 ~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      ..+.  .+|.|||++||+|+.++.++++++++...+..
T Consensus       150 ~~~~--~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~  185 (322)
T PRK09393        150 DPDV--LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSE  185 (322)
T ss_pred             eCCc--eEEecCCEEecccHHHHHHHHHHHHHHHhCHH
Confidence            6543  48899999999999999999999999877655

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=1.9e-28  Score=210.07  Aligned_cols=163  Identities=25%  Similarity=0.393  Sum_probs=140.5

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhc-CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQAL-ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~-~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      +++++++++++.|+..++++|+++ +|+++++++++++                +.++.|..+.++..+++.+..+||+|
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~----------------v~ss~g~~i~~~~~~~~~~~~~~D~l   64 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEP----------------VTSIGGLRVVPDYSLDDLPPEDYDLL   64 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCe----------------eEecCCeEEccccchhHCCHhHccEE
Confidence            478999999999999999999997 7999999998875                77889999999999998766789999


Q ss_pred             EEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCch-hHHHHHH--cCCeeeCCCCCce
Q 016237          283 VVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPA-VKLNVLL--AGASWLEPDPIDR  359 (392)
Q Consensus       283 iipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~-~~~~~~~--~~~~~~~~~~~~~  359 (392)
                      +||||..... ..++.+.+|||++++++++|+++|+|+++|+++|||+||++|+||. ..+.++.  ++.....++   .
T Consensus        65 ~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---~  140 (170)
T cd03140          65 ILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---Q  140 (170)
T ss_pred             EEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---c
Confidence            9999976433 4789999999999999999999999999999999999999999986 4555543  344333334   5


Q ss_pred             EEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          360 CFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       360 vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      +|.|||+|||+| .+..||++++++++.
T Consensus       141 ~v~dg~iiT~~g-~a~~d~al~~i~~l~  167 (170)
T cd03140         141 AVSDGNLITANG-TAPVEFAAEILRALD  167 (170)
T ss_pred             EEEcCCEEECCC-cCHHHHHHHHHHHcC
Confidence            999999999987 558999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.96  E-value=1.9e-28  Score=218.46  Aligned_cols=178  Identities=17%  Similarity=0.246  Sum_probs=144.1

Q ss_pred             cCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCc-ccccccccCccccCcCcCCC------CCCCccE
Q 016237           16 GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNFALNATFDEI------DPSKYDG   88 (392)
Q Consensus        16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~------~~~~~D~   88 (392)
                      ..||+..|+..|+++|+++|++|+++|+++++...+.++....... .......+.++..+.+++++      ++++||+
T Consensus        20 ~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDa   99 (232)
T cd03148          20 STGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAA   99 (232)
T ss_pred             CCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceE
Confidence            5799999999999999999999999999886544444443211000 00011345567888888887      4579999


Q ss_pred             EEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc------cCCeeEecCCCcHH------------
Q 016237           89 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP------------  149 (392)
Q Consensus        89 iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl------l~g~~~T~~~~~~~------------  149 (392)
                      ||+|||++++ .+++++.++++++++++++|+|++||||+++|..+++      ++||++|+|++.++            
T Consensus       100 v~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~  179 (232)
T cd03148         100 VFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPG  179 (232)
T ss_pred             EEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccC
Confidence            9999999865 4999999999999999999999999999999999988      99999999987644            


Q ss_pred             --------HHHHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHh
Q 016237          150 --------VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       150 --------~l~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                              .|++.|+.|...+....+|+|||+||+++|.|+..++..+++.+
T Consensus       180 ~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         180 HLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             cccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                    45667899987743345899999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.96  E-value=5.2e-28  Score=215.45  Aligned_cols=176  Identities=20%  Similarity=0.285  Sum_probs=141.8

Q ss_pred             CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccC-CCCC--ccc----cCCCCCcccccccccCCCCCCcCEE
Q 016237          210 DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD-FEGD--QTY----SEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~-~~~~--~~~----~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      .|+...|+..|+++|+++|++|+++|+.++. ..++.++.. +.++  ..+    ....+..+..+..+++++.++||+|
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav   98 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTF-GFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIF   98 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEE
Confidence            5888999999999999999999999998753 233322211 1111  111    1123446677888999999999999


Q ss_pred             EEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc-------CCCCCceeecCchh--------------
Q 016237          283 VVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA-------GVLKGKKCTAYPAV--------------  340 (392)
Q Consensus       283 iipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a-------glL~g~~~T~~~~~--------------  340 (392)
                      |||||+++.. ++.++.+.++|++|++++|+|++||||+.+|+.+       +|++||++|+|+..              
T Consensus        99 ~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~  178 (231)
T cd03147          99 FVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR  178 (231)
T ss_pred             EECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence            9999998644 8999999999999999999999999999999998       99999999999975              


Q ss_pred             -----HHHHHHcCCeeeCCC-CC-ceEEEcCCeEEccCCCChHHHHHHHHHHh
Q 016237          341 -----KLNVLLAGASWLEPD-PI-DRCFTDGNLVSGAAWPGHPEFISQLMALL  386 (392)
Q Consensus       341 -----~~~~~~~~~~~~~~~-~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l  386 (392)
                           ++.+++.|++|.+.. ++ ..||.|||+||++++.++.+++++++++|
T Consensus       179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                 344567799988542 22 36999999999999999999999999976

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.95  E-value=4.2e-28  Score=216.07  Aligned_cols=178  Identities=25%  Similarity=0.401  Sum_probs=143.9

Q ss_pred             CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCcc-c---cCCCCCcccccccccCCCCCCcCEEEE
Q 016237          209 GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT-Y---SEKPGHNFTLTANFESVDVSGYDALVV  284 (392)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~~i~~~~~~~~~~~~~~D~vii  284 (392)
                      .+|+++.|+..|+++|+++|++|+++|++++++..++.+......... .   ....+..+..+..++++++++||+|+|
T Consensus        17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~i   96 (221)
T cd03141          17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFI   96 (221)
T ss_pred             cCccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEE
Confidence            379999999999999999999999999998764443322211111000 0   012455678888999999899999999


Q ss_pred             cCCCChh-hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC------CCCCceeecCchhH---------------H
Q 016237          285 PGGRAPE-YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAYPAVK---------------L  342 (392)
Q Consensus       285 pgg~~~~-~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag------lL~g~~~T~~~~~~---------------~  342 (392)
                      |||+++. .+..++.+.+||+++++++|+|++||+|+++|+++|      +|+||++|+||...               .
T Consensus        97 pGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~  176 (221)
T cd03141          97 PGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED  176 (221)
T ss_pred             CCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence            9998754 478899999999999999999999999999999999      79999999998754               3


Q ss_pred             HHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHh
Q 016237          343 NVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALL  386 (392)
Q Consensus       343 ~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l  386 (392)
                      .+++.|++|....+. ..+|+|+|+||++|+.++.++++++++.|
T Consensus       177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence            467788888753311 26999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.95  E-value=5.3e-28  Score=215.56  Aligned_cols=175  Identities=19%  Similarity=0.229  Sum_probs=144.2

Q ss_pred             CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC---CCCCcccccccccCC------CCCCc
Q 016237          209 GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE---KPGHNFTLTANFESV------DVSGY  279 (392)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~i~~~~~~~~~------~~~~~  279 (392)
                      ..|+++.|+..|+++|+++||+|+++|+.|++++.++.+...  .++.+..   ..+..+..+..++++      +.++|
T Consensus        20 ~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~--~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dY   97 (232)
T cd03148          20 STGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPH--EDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEY   97 (232)
T ss_pred             CCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCcccccc--ccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhc
Confidence            479999999999999999999999999999877666554321  0011100   123445666677776      45799


Q ss_pred             CEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCC------CCCceeecCchhHH----------
Q 016237          280 DALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAGV------LKGKKCTAYPAVKL----------  342 (392)
Q Consensus       280 D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~agl------L~g~~~T~~~~~~~----------  342 (392)
                      |+||+|||+++.. ++.++.+.+++++|+++||+|+|||||+++|..+++      ++||++|+|+..++          
T Consensus        98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~  177 (232)
T cd03148          98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYM  177 (232)
T ss_pred             eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccc
Confidence            9999999998754 999999999999999999999999999999999998      99999999988654          


Q ss_pred             ----------HHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHh
Q 016237          343 ----------NVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALL  386 (392)
Q Consensus       343 ----------~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l  386 (392)
                                .++..|++|... ++ .+||.||++||++++.|+..++.++++.|
T Consensus       178 ~~~~pf~le~~L~~~Ga~~~~~-~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         178 PGHLTWLVGEELKKMGMNIIND-DITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             cCcccccHHHHHHHcCCEEECC-CCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                      345678888876 45 67999999999999999999999999976

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.95  E-value=1.7e-27  Score=218.73  Aligned_cols=199  Identities=16%  Similarity=0.175  Sum_probs=168.2

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCC
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE   80 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (392)
                      +.+|+|+++|+|....+..+.+.|+.||       |.+.+++.++.                ++.+++|+.+.+|..+++
T Consensus        10 ~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~----------------~V~ss~G~~i~~d~~~~~   73 (328)
T COG4977          10 PQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG----------------PVRSSSGLSIAPDGGLEA   73 (328)
T ss_pred             ceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC----------------CcccCCCceEecCCcccc
Confidence            4689999999999999999999999877       55777887775                589999999999999998


Q ss_pred             CCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEE
Q 016237           81 IDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI  159 (392)
Q Consensus        81 ~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~  159 (392)
                      ..  .+|.|+++||.+++.....+++..||++.+++|..++++|+|+++||++|||+||+||+||.+.+.|++ ||....
T Consensus        74 ~~--~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~  151 (328)
T COG4977          74 AP--PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRV  151 (328)
T ss_pred             cC--cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCC
Confidence            66  599999999987665444589999999999999999999999999999999999999999999999998 898874


Q ss_pred             cCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCcCC----------------CCccEEEEeCCCCCcchhHHHHHH
Q 016237          160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITG----------------SDKRILFLCGDYMEDYEVAVPFQS  223 (392)
Q Consensus       160 ~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~----------------~~~~v~ill~~~~~~~e~~~~~~~  223 (392)
                      ...   +|++||+++||+|..+++|+++++|+...+....                ....+......+.....+...++.
T Consensus       152 ~~~---lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~~~~~Q~~~~~~~~~~~~~~l~~~i~~  228 (328)
T COG4977         152 TDR---LFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRSGGDRQRLPLLGRLGHRDPRLLRAIEL  228 (328)
T ss_pred             CCc---eEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccCCCccccccccccCCCCCHHHHHHHHH
Confidence            333   6999999999999999999999999887776531                122344444556666677777777


Q ss_pred             HHhc
Q 016237          224 LQAL  227 (392)
Q Consensus       224 ~~~~  227 (392)
                      ++.+
T Consensus       229 me~n  232 (328)
T COG4977         229 MEAN  232 (328)
T ss_pred             HHHh
Confidence            7664

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.95  E-value=5e-27  Score=204.89  Aligned_cols=176  Identities=40%  Similarity=0.708  Sum_probs=154.3

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccc-cCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~   86 (392)
                      ++||++++++||+..|+..|+++|+++|++++++++.++.              ..+.++. +..+.++..++++++++|
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~y   67 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADY   67 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHC
Confidence            3689999999999999999999999999999999998741              0233444 466777788888877899


Q ss_pred             cEEEEcCC-CCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc-ccCCeeEecCCCcHHHHHH----CCCeEEc
Q 016237           87 DGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWIE  160 (392)
Q Consensus        87 D~iiipGG-~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag-ll~g~~~T~~~~~~~~l~~----~~~~~~~  160 (392)
                      |+|++||| ++++.+..++.++++++++++++|+|++||||+++|+.+| +++||++|+++...+....    .++.|++
T Consensus        68 dal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd  147 (188)
T COG0693          68 DALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVD  147 (188)
T ss_pred             CEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEec
Confidence            99999999 8888877789999999999999999999999999999999 9999999999999888877    7999998


Q ss_pred             CCC-cceeeecCc-eEecCCCCChHHHHHHHHHHhcCCc
Q 016237          161 PET-MAACVVDGN-IITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       161 ~~~-~~~~v~dg~-iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      ... ...+|.||+ ++|+.++.++.+++..+++.+.+..
T Consensus       148 ~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         148 APLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             cccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence            831 112899999 9999999999999999999988654

>PRK04155 chaperone protein HchA; Provisional

Probab=99.95  E-value=2.9e-27  Score=215.97  Aligned_cols=179  Identities=21%  Similarity=0.240  Sum_probs=142.0

Q ss_pred             CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC---CCCCccccccccc----CCC--CCCcC
Q 016237          210 DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE---KPGHNFTLTANFE----SVD--VSGYD  280 (392)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~i~~~~~~~----~~~--~~~~D  280 (392)
                      .|+++.|+..|+++|+++|++|+++|+.|++.+.++.++...  .+.++.   ..+..+..+..++    ++.  .++||
T Consensus        72 tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~--d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYD  149 (287)
T PRK04155         72 TGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHE--DEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYA  149 (287)
T ss_pred             CCccHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccccc--chhHHHHHHHhhhhccCceeHHHhhhhhcCCccccc
Confidence            578899999999999999999999999988766665543211  001111   1122233333333    333  67999


Q ss_pred             EEEEcCCCCh-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC------CCCCceeecCchh-------------
Q 016237          281 ALVVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAYPAV-------------  340 (392)
Q Consensus       281 ~viipgg~~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag------lL~g~~~T~~~~~-------------  340 (392)
                      +||||||++. ..++.++.+.++|+++++++|+|++||||+++|..+|      +++||++|+||..             
T Consensus       150 aV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~  229 (287)
T PRK04155        150 AVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPG  229 (287)
T ss_pred             EEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccc
Confidence            9999999986 4489999999999999999999999999999999999      9999999999876             


Q ss_pred             ------HHHHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhccccc
Q 016237          341 ------KLNVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVL  391 (392)
Q Consensus       341 ------~~~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~~  391 (392)
                            ++.++..|+++++.. + ..||.|||+||++|+.++.+|++.+++.|...+.
T Consensus       230 ~~~~~~e~~L~~~Ga~~~~~~-~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~~~  286 (287)
T PRK04155        230 HLTWLFGEELKKMGVNIVNDD-ITGRVHKDRKLLTGDSPLASNALGKLAAQELLAAVA  286 (287)
T ss_pred             cccchHHHHHHHcCCEEEcCC-CCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHHhc
Confidence                  456777899998752 2 3699999999999999999999999999876553

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.95  E-value=5.1e-27  Score=206.16  Aligned_cols=171  Identities=18%  Similarity=0.260  Sum_probs=147.4

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      +.||+.|++++++++.|+..|+++|++++++++++|.+++.             ...+.++.|..+.++..+++.+.++|
T Consensus         1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~   67 (196)
T PRK11574          1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDF   67 (196)
T ss_pred             CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCC
Confidence            46789999999999999999999999999999999986421             12367788999999988988776789


Q ss_pred             CEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHH-HHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCC
Q 016237          280 DALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQI-LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI  357 (392)
Q Consensus       280 D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~-La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~  357 (392)
                      |+|+||||.+ ...+..++.+.+||++++++|++|+++|+|+++ |+.+|+|+|+++|.++.+.+.  +|++.+.++.  
T Consensus        68 D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~--~p~~~~~~~~--  143 (196)
T PRK11574         68 DVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK--IPAEQWQDKR--  143 (196)
T ss_pred             CEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh--cccCcccCCC--
Confidence            9999999974 444677889999999999999999999999985 666999999999999887754  4777887654  


Q ss_pred             ceEEEcC--CeEEccCCCChHHHHHHHHHHhccc
Q 016237          358 DRCFTDG--NLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       358 ~~vv~dg--~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                        ++.|+  +++||+|+.++.||++++|+++.|+
T Consensus       144 --~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~  175 (196)
T PRK11574        144 --VVWDARVNLLTSQGPGTAIDFALKIIDLLVGR  175 (196)
T ss_pred             --EEEeCCccEEeCCCcchHHHHHHHHHHHhcCH
Confidence              66665  9999999999999999999999875

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.95  E-value=3.9e-27  Score=199.79  Aligned_cols=171  Identities=36%  Similarity=0.525  Sum_probs=152.2

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ++.+.++..++.+..|+..+.++|++.|..|+++++.++.               .+....+..+.+|..+.|.-.++||
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yD   69 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYD   69 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhcccccc
Confidence            5677888888999999999999999999999999998764               2455566666777766665558999


Q ss_pred             EEEEcCC-CChhhccCChHHHHHHHHHHHcCCcEEEEehHH-HHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237          281 ALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHGQ-QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID  358 (392)
Q Consensus       281 ~viipgg-~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~  358 (392)
                      +++|||| .|...|...+.+.+.+++|.+.|++|++||+|+ .+|+..|++.|+++|+||.++..+...+..|++++   
T Consensus        70 viilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~---  146 (247)
T KOG2764|consen   70 VIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR---  146 (247)
T ss_pred             EEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC---
Confidence            9999999 788889999999999999999999999999999 66666677779999999999999999899999875   


Q ss_pred             eEEEcCCeEEccCCCChHHHHHHHHHHhcccc
Q 016237          359 RCFTDGNLVSGAAWPGHPEFISQLMALLGIQV  390 (392)
Q Consensus       359 ~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~  390 (392)
                       +|.||+++||+|+..+.+|++.|+|+|.|+.
T Consensus       147 -vv~dG~liTSrGpgT~~eFal~lvEqL~GKe  177 (247)
T KOG2764|consen  147 -VVKDGNLITSRGPGTAFEFALKLVEQLGGKE  177 (247)
T ss_pred             -eEEeCcEEeccCCCchHHHHHHHHHHhcCch
Confidence             9999999999999999999999999999875

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.95  E-value=4.7e-27  Score=206.37  Aligned_cols=171  Identities=23%  Similarity=0.342  Sum_probs=143.6

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+++|||++.|+..|+++|+++|++++++|..++.             ..++.++.|.++.++.++++++.++||+
T Consensus         3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~D~   69 (196)
T PRK11574          3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDFDV   69 (196)
T ss_pred             ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCCCE
Confidence            689999999999999999999999999999999986421             0147788999999999999877678999


Q ss_pred             EEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHH-hhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237           89 LVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (392)
Q Consensus        89 iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~-La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~  166 (392)
                      |+||||.+ ...+..++.+++||+++++++++|++||+|+++ |+.+|+++|+++|+++..++.   ++...+..+.   
T Consensus        70 l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~---~p~~~~~~~~---  143 (196)
T PRK11574         70 IVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK---IPAEQWQDKR---  143 (196)
T ss_pred             EEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh---cccCcccCCC---
Confidence            99999974 444677889999999999999999999999985 667999999999998776543   3433333332   


Q ss_pred             eeecC--ceEecCCCCChHHHHHHHHHHhcCCcC
Q 016237          167 CVVDG--NIITGATYEGHPEFIRLFLKALGGTIT  198 (392)
Q Consensus       167 ~v~dg--~iiT~~g~~s~~~~~~~~i~~l~~~~~  198 (392)
                      ++.|+  |++||+|+.++.|+++++++.+.++..
T Consensus       144 ~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~  177 (196)
T PRK11574        144 VVWDARVNLLTSQGPGTAIDFALKIIDLLVGREK  177 (196)
T ss_pred             EEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHH
Confidence            66665  999999999999999999999988763

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.95  E-value=1.1e-26  Score=219.64  Aligned_cols=169  Identities=16%  Similarity=0.198  Sum_probs=150.5

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccc
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANF  271 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  271 (392)
                      .+++++.+++++|++..++..+.|+|+.++       |+|+++|+++++                ++++.|..+.+|..+
T Consensus         7 ~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~----------------v~ss~g~~i~~d~~~   70 (322)
T PRK09393          7 MHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGP----------------LRAAGGITVVADGGL   70 (322)
T ss_pred             ccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCc----------------eEeCCCcEEeCCCCc
Confidence            346789999999999999999999997653       689999998775                788899999999888


Q ss_pred             cCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCC
Q 016237          272 ESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGA  349 (392)
Q Consensus       272 ~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~  349 (392)
                      ++  .++||+||||||.+... ..++.+.+||+++++++++|+++|+|+++||++|||+|+++|+||...+.++  +|.+
T Consensus        71 ~~--~~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~  147 (322)
T PRK09393         71 EL--LDRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAI  147 (322)
T ss_pred             cc--cCCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCC
Confidence            86  45899999999876543 4589999999999999999999999999999999999999999999999887  5888


Q ss_pred             eeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          350 SWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       350 ~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      .+.++.   .+|.||+++||+|..++.++++++++++.|+
T Consensus       148 ~~~~~~---~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~  184 (322)
T PRK09393        148 RVDPDV---LYVDEGQILTSAGSAAGIDLCLHLVRRDFGS  184 (322)
T ss_pred             EEeCCc---eEEecCCEEecccHHHHHHHHHHHHHHHhCH
Confidence            888765   6899999999999999999999999988763

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.94  E-value=1.4e-26  Score=212.71  Aligned_cols=168  Identities=18%  Similarity=0.204  Sum_probs=150.8

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccccccc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFE  272 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~  272 (392)
                      +...+.+++++++....++.+.+.|+.+|       |.+..++.++++                +.++.|..+.+|..++
T Consensus         9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~~----------------V~ss~G~~i~~d~~~~   72 (328)
T COG4977           9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGGP----------------VRSSSGLSIAPDGGLE   72 (328)
T ss_pred             CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCCC----------------cccCCCceEecCCccc
Confidence            45579999999999999999999999886       668888888775                7899999999999999


Q ss_pred             CCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCe
Q 016237          273 SVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGAS  350 (392)
Q Consensus       273 ~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~  350 (392)
                      +..  .+|++++.||.+++.....+++..|||+.+.+|..++++|+|+|+||++|||+||++|+||...+.|+  +|+++
T Consensus        73 ~~~--~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~  150 (328)
T COG4977          73 AAP--PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVR  150 (328)
T ss_pred             ccC--cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCC
Confidence            865  49999999988876655559999999999999999999999999999999999999999999999987  79999


Q ss_pred             eeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          351 WLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       351 ~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                       ..++   .+++||+++||+|..++.||+++||++..|.
T Consensus       151 -~~~~---lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~  185 (328)
T COG4977         151 -VTDR---LFVIDGDRITCAGGTAAIDLMLALIRRDFGA  185 (328)
T ss_pred             -CCCc---eEEecCCEEEcCCchHHHHHHHHHHHHHhCH
Confidence             4445   6999999999999999999999999987764

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.94  E-value=5.4e-26  Score=198.32  Aligned_cols=176  Identities=40%  Similarity=0.676  Sum_probs=154.2

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCC-CCcccccccccCCCCCCc
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP-GHNFTLTANFESVDVSGY  279 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~  279 (392)
                      ++++++++.++++..|+..|+++|+++|++++++++.++.              ..+.++. +..+..+..+++++.++|
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~y   67 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADY   67 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHC
Confidence            5789999999999999999999999999999999998751              1133334 355666678888777899


Q ss_pred             CEEEEcCC-CChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC-CCCCceeecCchhHHHHHH----cCCeeeC
Q 016237          280 DALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG-VLKGKKCTAYPAVKLNVLL----AGASWLE  353 (392)
Q Consensus       280 D~viipgg-~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag-lL~g~~~T~~~~~~~~~~~----~~~~~~~  353 (392)
                      |+|++||| ++++.+..++.+++++|+|++++|+|++||||+++|+.+| +|+||++|+++..++.+..    .|++|++
T Consensus        68 dal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd  147 (188)
T COG0693          68 DALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVD  147 (188)
T ss_pred             CEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEec
Confidence            99999999 8888888789999999999999999999999999999999 9999999999999988887    8999998


Q ss_pred             CCCC-ceEEEcCC-eEEccCCCChHHHHHHHHHHhcccc
Q 016237          354 PDPI-DRCFTDGN-LVSGAAWPGHPEFISQLMALLGIQV  390 (392)
Q Consensus       354 ~~~~-~~vv~dg~-lvT~~g~~~~~~~~~~li~~l~~~~  390 (392)
                      ...+ ..+|.||+ ++|+.++.+..+++.++++.+.+..
T Consensus       148 ~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         148 APLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             cccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence            8321 24899999 9999999999999999999998753

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.93  E-value=2.1e-25  Score=196.43  Aligned_cols=165  Identities=25%  Similarity=0.318  Sum_probs=129.0

Q ss_pred             CEEEEEec-----CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccC-------c
Q 016237            9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------A   76 (392)
Q Consensus         9 ~kI~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~   76 (392)
                      +||+|++.     +|++..|+..|+++|+++|++|+++|+.++.....  ..  ..+. .+.+..+..+..+       .
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~--~~--~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVI--NH--LTGE-EMGETRNVLVESARIARGEIK   76 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccc--cC--cccc-ccccccceeeehhhhhccCCC
Confidence            58999998     99999999999999999999999999987532110  00  0000 1223333333322       5


Q ss_pred             CcCCCCCCCccEEEEcCCCCcc-----------cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecC-
Q 016237           77 TFDEIDPSKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY-  144 (392)
Q Consensus        77 ~~~~~~~~~~D~iiipGG~~~~-----------~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~-  144 (392)
                      .++++++++||+||||||+++.           .++.++.++++++++++++|+|++||||+++|+.+.. +||++|++ 
T Consensus        77 ~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~  155 (217)
T PRK11780         77 DLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGN  155 (217)
T ss_pred             chhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecC
Confidence            7888888899999999998742           2355899999999999999999999999999998622 89999999 


Q ss_pred             -CCcHHHHHHCCCeEEcCCCcceeeec--CceEecCCCC
Q 016237          145 -PPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYE  180 (392)
Q Consensus       145 -~~~~~~l~~~~~~~~~~~~~~~~v~d--g~iiT~~g~~  180 (392)
                       +...+.+++.|+.|++.+.+. +|+|  +|+|||....
T Consensus       156 ~~~~~~~~~~aGa~~vd~~~~~-vvvD~~~~lvt~~~~~  193 (217)
T PRK11780        156 DEDTAAAIEKMGGEHVDCPVDD-IVVDEENKVVTTPAYM  193 (217)
T ss_pred             ChhhHHHHHHCCCEEEcCCCCe-EEEECCCCEEeCCccc
Confidence             888999999999999874322 5666  7899998644

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.93  E-value=9.4e-26  Score=188.61  Aligned_cols=141  Identities=40%  Similarity=0.722  Sum_probs=123.8

Q ss_pred             eEEEECCCCCCCCCCCccccCCCCccccccccc---CccccCcCcCCCCCCCccEEEEcCCCC-cccccCC-HHHHHHHH
Q 016237           37 SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG---HNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMN-DSVIDLVR  111 (392)
Q Consensus        37 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~D~iiipGG~~-~~~~~~~-~~l~~~l~  111 (392)
                      +|+++++..+.               .+.++.|   .++.++.+++++++.+||+||||||++ +..+..+ +.++++++
T Consensus         1 ~V~~vs~~~~~---------------~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~   65 (147)
T PF01965_consen    1 KVDVVSPGDGK---------------EVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK   65 (147)
T ss_dssp             EEEEEESSSSS---------------EEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEECCCCC---------------eEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence            47788887653               5788888   999999999999999999999999997 5567745 99999999


Q ss_pred             HHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceeeecC-ceEecCCCCChHHHHHHHH
Q 016237          112 KFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFL  190 (392)
Q Consensus       112 ~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v~dg-~iiT~~g~~s~~~~~~~~i  190 (392)
                      ++++++|+|++||+|+.+|+.+|+|+||++|+|+...+.++..+..|++...  .+++|+ ||||++|+.++.+|++.++
T Consensus        66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv  143 (147)
T PF01965_consen   66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV  143 (147)
T ss_dssp             HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred             HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999988889999998432  278999 9999999999999999999


Q ss_pred             HHhc
Q 016237          191 KALG  194 (392)
Q Consensus       191 ~~l~  194 (392)
                      +.|+
T Consensus       144 e~L~  147 (147)
T PF01965_consen  144 EALG  147 (147)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9874

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.93  E-value=2.5e-25  Score=186.06  Aligned_cols=141  Identities=38%  Similarity=0.674  Sum_probs=123.6

Q ss_pred             eEEEEcCCCCCCCCCCCcccCCCCCccccCCCC---CcccccccccCCCCCCcCEEEEcCCCC-hhhccCC-hHHHHHHH
Q 016237          230 HVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG---HNFTLTANFESVDVSGYDALVVPGGRA-PEYLALN-ENVIALVK  304 (392)
Q Consensus       230 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~~~~~~~~D~viipgg~~-~~~~~~~-~~l~~~l~  304 (392)
                      +|+++|+..+               +.++++.|   ..+.++..+++++..+||+||||||++ ...++.+ +.+.++|+
T Consensus         1 ~V~~vs~~~~---------------~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~   65 (147)
T PF01965_consen    1 KVDVVSPGDG---------------KEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK   65 (147)
T ss_dssp             EEEEEESSSS---------------SEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEECCCC---------------CeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence            4777877655               24777888   899999999999999999999999998 5667755 99999999


Q ss_pred             HHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEEEcC-CeEEccCCCChHHHHHHHH
Q 016237          305 DFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDG-NLVSGAAWPGHPEFISQLM  383 (392)
Q Consensus       305 ~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~dg-~lvT~~g~~~~~~~~~~li  383 (392)
                      +|++++|+|+|||+|+.+|+++|+|+||++|+||..+..++..+.++++...  .++.|+ |+||++++.++.+|+++++
T Consensus        66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv  143 (147)
T PF01965_consen   66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV  143 (147)
T ss_dssp             HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred             HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999989999999998332  488999 9999999999999999999


Q ss_pred             HHhc
Q 016237          384 ALLG  387 (392)
Q Consensus       384 ~~l~  387 (392)
                      +.|+
T Consensus       144 e~L~  147 (147)
T PF01965_consen  144 EALG  147 (147)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9985

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.92  E-value=2e-24  Score=190.25  Aligned_cols=166  Identities=21%  Similarity=0.242  Sum_probs=130.3

Q ss_pred             CccEEEEeC-----CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-------
Q 016237          201 DKRILFLCG-----DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT-------  268 (392)
Q Consensus       201 ~~~v~ill~-----~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------  268 (392)
                      |+|+++++.     +|+++.|+..|++.|+++|++++++|+.++..+....     ..+..+....+..+..+       
T Consensus         1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   75 (217)
T PRK11780          1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINH-----LTGEEMGETRNVLVESARIARGEI   75 (217)
T ss_pred             CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccC-----ccccccccccceeeehhhhhccCC
Confidence            468899987     8999999999999999999999999998875332111     11111222223223222       


Q ss_pred             ccccCCCCCCcCEEEEcCCCCh-----------hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecC
Q 016237          269 ANFESVDVSGYDALVVPGGRAP-----------EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAY  337 (392)
Q Consensus       269 ~~~~~~~~~~~D~viipgg~~~-----------~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~  337 (392)
                      ..++++++++||+||||||+++           +.++.++.+.+++++|+++||+|+|||||+++|+.+.. +||++|++
T Consensus        76 ~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~  154 (217)
T PRK11780         76 KDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIG  154 (217)
T ss_pred             CchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEec
Confidence            5678888889999999999874           22456999999999999999999999999999999732 99999999


Q ss_pred             --chhHHHHHHcCCeeeCCCCCceEEEc--CCeEEccCCC
Q 016237          338 --PAVKLNVLLAGASWLEPDPIDRCFTD--GNLVSGAAWP  373 (392)
Q Consensus       338 --~~~~~~~~~~~~~~~~~~~~~~vv~d--g~lvT~~g~~  373 (392)
                        +..+..+++.|++|++.... .+|.|  +|+||+..+.
T Consensus       155 ~~~~~~~~~~~aGa~~vd~~~~-~vvvD~~~~lvt~~~~~  193 (217)
T PRK11780        155 NDEDTAAAIEKMGGEHVDCPVD-DIVVDEENKVVTTPAYM  193 (217)
T ss_pred             CChhhHHHHHHCCCEEEcCCCC-eEEEECCCCEEeCCccc
Confidence              99999999999999976322 36777  7899999754

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.92  E-value=1.6e-24  Score=189.48  Aligned_cols=173  Identities=22%  Similarity=0.263  Sum_probs=130.8

Q ss_pred             EEEe-----cCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccC-------cCcC
Q 016237           12 LLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFD   79 (392)
Q Consensus        12 ~ill-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~   79 (392)
                      +|++     +|||+..|+..|+++|+++|++|+++|+.++....+..+..    . .+..+.+..+..+       .+++
T Consensus         2 ~~~~~~cg~~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~l~   76 (213)
T cd03133           2 AVVLSGCGVYDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTG----E-AEGESRNVLVESARIARGNIKDLA   76 (213)
T ss_pred             EEEEeCCcCCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccc----c-ccccccceeeehhhhhhcCCCchH
Confidence            5665     58999999999999999999999999998764222211111    0 2333444444444       6788


Q ss_pred             CCCCCCccEEEEcCCCCc-ccc----------cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCC--C
Q 016237           80 EIDPSKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--P  146 (392)
Q Consensus        80 ~~~~~~~D~iiipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~--~  146 (392)
                      ++++++||+|+||||+++ ..+          +.++.++++++++++++|+|++||+|+++|+.+.. +||++|+|+  .
T Consensus        77 ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~  155 (213)
T cd03133          77 KLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAG  155 (213)
T ss_pred             HCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHH
Confidence            888889999999999864 222          34889999999999999999999999999999766 999999999  7


Q ss_pred             cHHHHHHCCCeEEcCCCcceeee-cCceEecCCCC---ChHHHHHHHH
Q 016237          147 VKPVLIAAGASWIEPETMAACVV-DGNIITGATYE---GHPEFIRLFL  190 (392)
Q Consensus       147 ~~~~l~~~~~~~~~~~~~~~~v~-dg~iiT~~g~~---s~~~~~~~~i  190 (392)
                      .++.+++.|+.|.+++.+..+|+ |||+|||+...   +..+.++.+-
T Consensus       156 ~~~~l~~aGa~~~d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~~~  203 (213)
T cd03133         156 TAAAIEKMGAEHVNCPVEEIVVDEKNKVVTTPAYMLADSIHEIADGIE  203 (213)
T ss_pred             HHHHHHHCCCEEEeCCCCeEEEECCCCEEeCccccCCCCHHHHHHhHH
Confidence            88899999999997633323443 37999998764   4445555443

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.92  E-value=5.1e-24  Score=186.29  Aligned_cols=167  Identities=20%  Similarity=0.256  Sum_probs=130.7

Q ss_pred             CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-------ccccCCCCCCcCE
Q 016237          209 GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT-------ANFESVDVSGYDA  281 (392)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------~~~~~~~~~~~D~  281 (392)
                      ++++++.|+..|+++|+++|++++++|+.++..+.++....     ..+....+..+..+       ..+++++.++||+
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDa   85 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTG-----EAEGESRNVLVESARIARGNIKDLAKLKAADFDA   85 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccc-----cccccccceeeehhhhhhcCCCchHHCCHhHCCE
Confidence            68999999999999999999999999999886554433221     12222334334333       5778888889999


Q ss_pred             EEEcCCCCh-hhc----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCc--hhHHHHHHcC
Q 016237          282 LVVPGGRAP-EYL----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYP--AVKLNVLLAG  348 (392)
Q Consensus       282 viipgg~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~--~~~~~~~~~~  348 (392)
                      ||||||+++ +.+          +.++.+.+++++|++++|+|+|||+|+++|+.++. +||++|+||  ..+..++++|
T Consensus        86 lviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aG  164 (213)
T cd03133          86 LIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMG  164 (213)
T ss_pred             EEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCC
Confidence            999999874 333          24889999999999999999999999999999876 999999999  8899999999


Q ss_pred             CeeeCCCCCceEEEc--CCeEEccCCC---ChHHHHHHH
Q 016237          349 ASWLEPDPIDRCFTD--GNLVSGAAWP---GHPEFISQL  382 (392)
Q Consensus       349 ~~~~~~~~~~~vv~d--g~lvT~~g~~---~~~~~~~~l  382 (392)
                      +.|.+.... .+|.|  ||+|||+.+.   +..+.++-|
T Consensus       165 a~~~d~~~~-~vvvd~dg~lITs~~~~~~~~~~~~~~~~  202 (213)
T cd03133         165 AEHVNCPVE-EIVVDEKNKVVTTPAYMLADSIHEIADGI  202 (213)
T ss_pred             CEEEeCCCC-eEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence            999865222 35555  7999998864   555555544

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.84  E-value=9.2e-21  Score=157.61  Aligned_cols=113  Identities=25%  Similarity=0.388  Sum_probs=103.9

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+++|||+..|+..++++|+.+|++++++|++++                ++.++.|.++.++.++++.+..+||
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~----------------~v~s~~g~~i~~~~~l~~~~~~~~D   64 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG----------------GVVDSDGKTLEVDQTYAGAPSVLFD   64 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC----------------ceecCCCcEEecceeecCCChhhcC
Confidence            368999999999999999999999999999999999987                5788899999999999988777899


Q ss_pred             EEEEcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCccc
Q 016237           88 GLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  136 (392)
Q Consensus        88 ~iiipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll  136 (392)
                      +|+||||.+... +..++.+.+||+++++++++|+++|+|+++|+++|+|
T Consensus        65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            999999986533 4678999999999999999999999999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.81  E-value=1.8e-19  Score=149.86  Aligned_cols=112  Identities=23%  Similarity=0.442  Sum_probs=102.7

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      +++.++++++++..|+..++++|+.+|++++++|+++++                ++++.|..+.++..+++.+..+||+
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~----------------v~s~~g~~i~~~~~l~~~~~~~~D~   65 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGG----------------VVDSDGKTLEVDQTYAGAPSVLFDA   65 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCc----------------eecCCCcEEecceeecCCChhhcCE
Confidence            579999999999999999999999999999999999875                6778888899998899877778999


Q ss_pred             EEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCC
Q 016237          282 LVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAGVL  329 (392)
Q Consensus       282 viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL  329 (392)
                      |+||||.+... +..++.+.+||+++++++|+|+++|+|+++|+++|+|
T Consensus        66 liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          66 VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            99999987533 5788999999999999999999999999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.64  E-value=7e-16  Score=155.87  Aligned_cols=115  Identities=23%  Similarity=0.268  Sum_probs=106.6

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      ++|||+||++||++..|+..+.++|.++|.++.+++++++                .+.++.|..+.+|.++.+.+...|
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G----------------~V~~s~G~~I~aD~t~~~~~Sv~F  659 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG----------------EVTADDGTVLPIAATFAGAPSLTF  659 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEECCCCCEEecceeeccCCccCC
Confidence            4689999999999999999999999999999999999876                588899999999999999887789


Q ss_pred             cEEEEcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccC
Q 016237           87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK  137 (392)
Q Consensus        87 D~iiipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~  137 (392)
                      |+|+||||. ++..+..++.+++||+++++++|+|+++|+|+.+|+.+||..
T Consensus       660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~  711 (752)
T PRK11249        660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD  711 (752)
T ss_pred             CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence            999999996 556678899999999999999999999999999999999854

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.54  E-value=4e-14  Score=143.24  Aligned_cols=115  Identities=20%  Similarity=0.327  Sum_probs=106.1

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      ..++|+|++.+|++..++..++++|+++|.+++++|+++++                +.+..|..+.++.++++.....|
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~----------------V~~s~G~~I~aD~t~~~~~Sv~F  659 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGE----------------VTADDGTVLPIAATFAGAPSLTF  659 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCe----------------EECCCCCEEecceeeccCCccCC
Confidence            46899999999999999999999999999999999998875                77788999999999999877789


Q ss_pred             CEEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCC
Q 016237          280 DALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLK  330 (392)
Q Consensus       280 D~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~  330 (392)
                      |+|+||||. +...+..++.+++||+++++++|+|+++|+|+++|+++||..
T Consensus       660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~  711 (752)
T PRK11249        660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD  711 (752)
T ss_pred             CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence            999999996 466688899999999999999999999999999999999965

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.30  E-value=2.4e-11  Score=97.79  Aligned_cols=180  Identities=17%  Similarity=0.181  Sum_probs=121.6

Q ss_pred             CCEEEEEe-----cCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCC--CccccCCCCcccccccccCccccCcCcCC
Q 016237            8 KRSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVC--PTAVHQSTGHQTYSETRGHNFALNATFDE   80 (392)
Q Consensus         8 ~~kI~ill-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (392)
                      +|||++++     |||.+..|....+-.+.+.|.++..+.|+..+....  .....-.+.++...++..+.--.-..+.+
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~   80 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ   80 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence            46999998     688899999999999999999999999986432210  00000000011111111111112235666


Q ss_pred             CCCCCccEEEEcCCCCc-ccc----------cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-cccCCeeEe--cCCC
Q 016237           81 IDPSKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCT--AYPP  146 (392)
Q Consensus        81 ~~~~~~D~iiipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-gll~g~~~T--~~~~  146 (392)
                      .++++||++++|||+|+ ..+          .-++++..+.+.+++.|||++-+|.++.+|..- |  .+.+.|  ....
T Consensus        81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g--~~~~~TIGnD~d  158 (217)
T COG3155          81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG--FPLRLTIGNDID  158 (217)
T ss_pred             cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC--CceeEEecCCcc
Confidence            77889999999999985 222          236899999999999999999999999999864 2  223344  4566


Q ss_pred             cHHHHHHCCCeEEcCCCcceeee-cCceEecCCCCChHHHHHHHHHHh
Q 016237          147 VKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       147 ~~~~l~~~~~~~~~~~~~~~~v~-dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                      ..+.++..|+.++.++.+..+++ +++++|.    .+.-++..+-+.-
T Consensus       159 Ta~a~~~mG~eHv~cPvd~iV~D~~~KvvtT----PAYMLA~~IaeAA  202 (217)
T COG3155         159 TAEALEEMGAEHVPCPVDDIVVDEDNKVVTT----PAYMLAQNIAEAA  202 (217)
T ss_pred             HHHHHHHhCcccCCCCccceeecCCCceecC----hHHHHHHHHHHHH
Confidence            78889999999999988766665 4566664    2344455554443

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.26  E-value=3.3e-11  Score=108.57  Aligned_cols=129  Identities=19%  Similarity=0.262  Sum_probs=91.7

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+|+.++|.+  .-....++|+++|+++.+++....                 ..             .+.+..+||+|+
T Consensus         1 v~vl~~pG~n--~~~~~~~al~~aG~~v~~v~~~~~-----------------~~-------------~~~~l~~~d~li   48 (238)
T cd01740           1 VAVLRFPGSN--CDRDMAYAFELAGFEAEDVWHNDL-----------------LA-------------GRKDLDDYDGVV   48 (238)
T ss_pred             CEEEEcCCcC--CHHHHHHHHHHcCCCEEEEeccCC-----------------cc-------------ccCCHhhCCEEE
Confidence            6899999987  444688999999999999876421                 00             011234799999


Q ss_pred             EcCCCCc-cccc-----CCHH-HHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCC
Q 016237           91 IPGGRAP-EYLA-----MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET  163 (392)
Q Consensus        91 ipGG~~~-~~~~-----~~~~-l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~  163 (392)
                      ||||... +.+.     .... +.++|+++++++++|++||.|.++|+++|+|.|+. +.++..+......+ .|++.. 
T Consensus        49 ipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~~-  125 (238)
T cd01740          49 LPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTLR-  125 (238)
T ss_pred             ECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEEE-
Confidence            9999642 2221     1223 88999999999999999999999999999999976 66554432222111 344433 


Q ss_pred             cceeeecCceEecC
Q 016237          164 MAACVVDGNIITGA  177 (392)
Q Consensus       164 ~~~~v~dg~iiT~~  177 (392)
                         ++.+++++|+.
T Consensus       126 ---v~~~~si~t~~  136 (238)
T cd01740         126 ---VENNDSPFTKG  136 (238)
T ss_pred             ---EcCCCCceecC
Confidence               56788999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.23  E-value=5.3e-11  Score=107.29  Aligned_cols=129  Identities=22%  Similarity=0.289  Sum_probs=91.2

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV  283 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi  283 (392)
                      ++|+.++|.+  ......+.|+++|+++.+++....                 ..   +          +.+.++||.|+
T Consensus         1 v~vl~~pG~n--~~~~~~~al~~aG~~v~~v~~~~~-----------------~~---~----------~~~l~~~d~li   48 (238)
T cd01740           1 VAVLRFPGSN--CDRDMAYAFELAGFEAEDVWHNDL-----------------LA---G----------RKDLDDYDGVV   48 (238)
T ss_pred             CEEEEcCCcC--CHHHHHHHHHHcCCCEEEEeccCC-----------------cc---c----------cCCHhhCCEEE
Confidence            4688888887  556788999999999998876421                 00   0          22345899999


Q ss_pred             EcCCCCh-hhcc-----CChH-HHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCC
Q 016237          284 VPGGRAP-EYLA-----LNEN-VIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDP  356 (392)
Q Consensus       284 ipgg~~~-~~~~-----~~~~-l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~  356 (392)
                      ||||... +.+.     .... +.++|+++.+++++|.+||.|.++|+++|+|.|+. |.++..+......+ +|+..  
T Consensus        49 ipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~--  124 (238)
T cd01740          49 LPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTL--  124 (238)
T ss_pred             ECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEE--
Confidence            9999742 2222     1223 88999999999999999999999999999999977 66665443222111 33432  


Q ss_pred             CceEEEcCCeEEcc
Q 016237          357 IDRCFTDGNLVSGA  370 (392)
Q Consensus       357 ~~~vv~dg~lvT~~  370 (392)
                        .++.+++++|+.
T Consensus       125 --~v~~~~si~t~~  136 (238)
T cd01740         125 --RVENNDSPFTKG  136 (238)
T ss_pred             --EEcCCCCceecC
Confidence              356677888876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.21  E-value=9.8e-11  Score=104.05  Aligned_cols=95  Identities=22%  Similarity=0.329  Sum_probs=74.3

Q ss_pred             CEEEEEecCCCCccchHHHHHHHH-hCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +||+|+.++|.+  .-....++|+ .+|+++.++..+.                                 .+  .++||
T Consensus         1 ~~v~Vl~~~G~n--~~~d~~~a~~~~~G~~~~~v~~~~---------------------------------~~--l~~~D   43 (219)
T PRK03619          1 MKVAVIVFPGSN--CDRDMARALRDLLGAEPEYVWHKE---------------------------------TD--LDGVD   43 (219)
T ss_pred             CEEEEEecCCcC--hHHHHHHHHHhcCCCeEEEEecCc---------------------------------CC--CCCCC
Confidence            379999999988  2223378888 8999888875431                                 11  23799


Q ss_pred             EEEEcCCCCc-c-----cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCee
Q 016237           88 GLVIPGGRAP-E-----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  140 (392)
Q Consensus        88 ~iiipGG~~~-~-----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~  140 (392)
                      +|+||||.+. +     ....+..+.+||++++++++++++||+|.++|+++|||+|+-
T Consensus        44 ~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l  102 (219)
T PRK03619         44 AVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL  102 (219)
T ss_pred             EEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence            9999999642 2     123457899999999999999999999999999999999853

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.20  E-value=1.2e-10  Score=105.49  Aligned_cols=100  Identities=23%  Similarity=0.316  Sum_probs=75.0

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+.++|++..  ..+.++|+++|+++.+++....                           .+ ...  +.++||
T Consensus         3 ~~kvaVl~~pG~n~d--~e~~~Al~~aG~~v~~v~~~~~---------------------------~~-~~~--~l~~~D   50 (261)
T PRK01175          3 SIRVAVLRMEGTNCE--DETVKAFRRLGVEPEYVHINDL---------------------------AA-ERK--SVSDYD   50 (261)
T ss_pred             CCEEEEEeCCCCCCH--HHHHHHHHHCCCcEEEEeeccc---------------------------cc-ccc--chhhCC
Confidence            358999999999833  3668999999999999876421                           00 001  234899


Q ss_pred             EEEEcCCCCc-ccccCC--------HHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCe
Q 016237           88 GLVIPGGRAP-EYLAMN--------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  139 (392)
Q Consensus        88 ~iiipGG~~~-~~~~~~--------~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~  139 (392)
                      +|+||||.+. +.+...        +.+.+.|+++.++++++.+||.|.++|+++|+|.|.
T Consensus        51 gLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~  111 (261)
T PRK01175         51 CLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGF  111 (261)
T ss_pred             EEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCC
Confidence            9999999642 322221        234578899999999999999999999999999873

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.14  E-value=2.7e-10  Score=91.79  Aligned_cols=165  Identities=19%  Similarity=0.199  Sum_probs=115.5

Q ss_pred             CccEEEEe-----CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-------
Q 016237          201 DKRILFLC-----GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT-------  268 (392)
Q Consensus       201 ~~~v~ill-----~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------  268 (392)
                      |||+.+++     ++|.+..|-...+-.+.+.|.++.++.|+..     +..+.++-.++....+.+.-+..-       
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-----Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i   75 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-----QVHVINHLTGEAMPETRNVLVESARIARGEI   75 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-----hhhhhhhccccccchhhhHHHHHHHHhhccc
Confidence            57788876     7899999999999999999999999999854     345555544443322222211111       


Q ss_pred             ccccCCCCCCcCEEEEcCCCChhh-c----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceee--
Q 016237          269 ANFESVDVSGYDALVVPGGRAPEY-L----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCT--  335 (392)
Q Consensus       269 ~~~~~~~~~~~D~viipgg~~~~~-~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T--  335 (392)
                      ..+...++++||++++|||+|... +          .-++.+..+.+.|++.|||++-+|.+|.+|...-- ..-+.|  
T Consensus        76 ~~l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g-~~~~~TIG  154 (217)
T COG3155          76 RPLAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG-FPLRLTIG  154 (217)
T ss_pred             cchhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC-CceeEEec
Confidence            134555678999999999998422 2          45789999999999999999999999999987621 233444  


Q ss_pred             cCchhHHHHHHcCCeeeCCCCCceEEEc--CCeEEccCC
Q 016237          336 AYPAVKLNVLLAGASWLEPDPIDRCFTD--GNLVSGAAW  372 (392)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~vv~d--g~lvT~~g~  372 (392)
                      ..+...+.++..|+..++..... +|.|  .+++|.-..
T Consensus       155 nD~dTa~a~~~mG~eHv~cPvd~-iV~D~~~KvvtTPAY  192 (217)
T COG3155         155 NDIDTAEALEEMGAEHVPCPVDD-IVVDEDNKVVTTPAY  192 (217)
T ss_pred             CCccHHHHHHHhCcccCCCCccc-eeecCCCceecChHH
Confidence            35666777777887777654333 4443  578887543

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.09  E-value=9.8e-10  Score=97.66  Aligned_cols=95  Identities=32%  Similarity=0.441  Sum_probs=74.3

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHH-hcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQ-ALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~-~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ++++|+.++|.+  .-....+.|+ .+|+++..++.+.                                   .+.++||
T Consensus         1 ~~v~Vl~~~G~n--~~~d~~~a~~~~~G~~~~~v~~~~-----------------------------------~~l~~~D   43 (219)
T PRK03619          1 MKVAVIVFPGSN--CDRDMARALRDLLGAEPEYVWHKE-----------------------------------TDLDGVD   43 (219)
T ss_pred             CEEEEEecCCcC--hHHHHHHHHHhcCCCeEEEEecCc-----------------------------------CCCCCCC
Confidence            378999999977  3333488888 7898877775420                                   0234799


Q ss_pred             EEEEcCCCCh-h-----hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCce
Q 016237          281 ALVVPGGRAP-E-----YLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKK  333 (392)
Q Consensus       281 ~viipgg~~~-~-----~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~  333 (392)
                      +|+||||... +     .....+.+.+||++++++++++++||+|.++|+++|||+|+-
T Consensus        44 ~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l  102 (219)
T PRK03619         44 AVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL  102 (219)
T ss_pred             EEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence            9999998752 2     123457899999999999999999999999999999999964

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.08  E-value=6.2e-10  Score=100.91  Aligned_cols=100  Identities=24%  Similarity=0.412  Sum_probs=75.0

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      +++|++|+.++|++  +-..+.++|+++|+++.+++....                           .+  . ....++|
T Consensus         2 ~~~kvaVl~~pG~n--~d~e~~~Al~~aG~~v~~v~~~~~---------------------------~~--~-~~~l~~~   49 (261)
T PRK01175          2 ESIRVAVLRMEGTN--CEDETVKAFRRLGVEPEYVHINDL---------------------------AA--E-RKSVSDY   49 (261)
T ss_pred             CCCEEEEEeCCCCC--CHHHHHHHHHHCCCcEEEEeeccc---------------------------cc--c-ccchhhC
Confidence            45689999999998  334668999999999988875310                           00  0 0124589


Q ss_pred             CEEEEcCCCCh-hhccCC--------hHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCC
Q 016237          280 DALVVPGGRAP-EYLALN--------ENVIALVKDFMEAKKPVASICHGQQILAAAGVLKG  331 (392)
Q Consensus       280 D~viipgg~~~-~~~~~~--------~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g  331 (392)
                      |+|+||||.+. +.+...        +.+.+.|+++.+++|+|.+||.|.++|+++|||.|
T Consensus        50 DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg  110 (261)
T PRK01175         50 DCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG  110 (261)
T ss_pred             CEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence            99999999642 332221        23447899999999999999999999999999988

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.08  E-value=3.8e-10  Score=97.20  Aligned_cols=94  Identities=29%  Similarity=0.420  Sum_probs=76.1

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC-Cc
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS-GY  279 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~  279 (392)
                      ++|++|+.++|.+  .-.-.+..|+++|++...+-.                                   .+.... +|
T Consensus         2 ~~kvaVi~fpGtN--~d~d~~~A~~~aG~~~~~V~~-----------------------------------~d~~~~~~~   44 (231)
T COG0047           2 RPKVAVLRFPGTN--CDYDMAAAFERAGFEAEDVWH-----------------------------------SDLLLGRDF   44 (231)
T ss_pred             CceEEEEEcCCcC--chHHHHHHHHHcCCCceEEEe-----------------------------------eecccCCCc
Confidence            5799999999988  777778888888877555522                                   222222 79


Q ss_pred             CEEEEcCCCCh-hhc-----cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCC
Q 016237          280 DALVVPGGRAP-EYL-----ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKG  331 (392)
Q Consensus       280 D~viipgg~~~-~~~-----~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g  331 (392)
                      |+|++|||+.. +++     .....+.+-++++.++|+++.+||+|.++|.++|||.|
T Consensus        45 d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          45 DGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             cEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence            99999999863 333     34488999999999999999999999999999999999

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.06  E-value=7.1e-10  Score=95.49  Aligned_cols=94  Identities=29%  Similarity=0.439  Sum_probs=75.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC-Cc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS-KY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~   86 (392)
                      ++||+|+.+||.+  .-.....+|+++|+++..+--+.                                   .... +|
T Consensus         2 ~~kvaVi~fpGtN--~d~d~~~A~~~aG~~~~~V~~~d-----------------------------------~~~~~~~   44 (231)
T COG0047           2 RPKVAVLRFPGTN--CDYDMAAAFERAGFEAEDVWHSD-----------------------------------LLLGRDF   44 (231)
T ss_pred             CceEEEEEcCCcC--chHHHHHHHHHcCCCceEEEeee-----------------------------------cccCCCc
Confidence            3689999999998  66677788889999887765431                                   1122 69


Q ss_pred             cEEEEcCCCCc-ccc-----cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCC
Q 016237           87 DGLVIPGGRAP-EYL-----AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG  138 (392)
Q Consensus        87 D~iiipGG~~~-~~~-----~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g  138 (392)
                      |+|++|||++- +.+     ..-..+.+-++++.++++++.+||+|.++|.++|||.|
T Consensus        45 d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          45 DGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             cEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence            99999999853 222     23467889999999999999999999999999999999

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.04  E-value=2.1e-09  Score=96.17  Aligned_cols=94  Identities=27%  Similarity=0.430  Sum_probs=72.7

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+.++|.+.  -....++|+++|+++.++.....                                 +  .++||+
T Consensus         1 ~~v~Vl~~~G~n~--~~~~~~al~~~G~~~~~i~~~~~---------------------------------~--l~~~d~   43 (227)
T TIGR01737         1 MKVAVIRFPGTNC--DRDTVYALRLLGVDAEIVWYEDG---------------------------------S--LPDYDG   43 (227)
T ss_pred             CeEEEEeCCCcCc--HHHHHHHHHHCCCeEEEEecCCC---------------------------------C--CCCCCE
Confidence            4899999999873  22335888899999888743210                                 1  236999


Q ss_pred             EEEcCCCCc-cc-----ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCe
Q 016237           89 LVIPGGRAP-EY-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  139 (392)
Q Consensus        89 iiipGG~~~-~~-----~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~  139 (392)
                      |+||||... +.     +..+..+.++|+++.+++++|.+||.|.++|+.+|+|.|.
T Consensus        44 lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        44 VVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             EEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence            999999642 21     2335678899999999999999999999999999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.91  E-value=1.3e-08  Score=91.02  Aligned_cols=94  Identities=28%  Similarity=0.456  Sum_probs=72.4

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      ++|+|+.+++.+  .-....+.|+++|+++.++....                              ..     .+++|+
T Consensus         1 ~~v~Vl~~~G~n--~~~~~~~al~~~G~~~~~i~~~~------------------------------~~-----l~~~d~   43 (227)
T TIGR01737         1 MKVAVIRFPGTN--CDRDTVYALRLLGVDAEIVWYED------------------------------GS-----LPDYDG   43 (227)
T ss_pred             CeEEEEeCCCcC--cHHHHHHHHHHCCCeEEEEecCC------------------------------CC-----CCCCCE
Confidence            478999999886  33334688888998888774320                              00     236999


Q ss_pred             EEEcCCCCh-hh-----ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCc
Q 016237          282 LVVPGGRAP-EY-----LALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGK  332 (392)
Q Consensus       282 viipgg~~~-~~-----~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~  332 (392)
                      |++|||... +.     +..+..+.++|+++.+++++|.+||.|.++|+++|+|.|.
T Consensus        44 lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        44 VVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             EEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence            999998742 21     2335678899999999999999999999999999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.82  E-value=3.8e-08  Score=76.72  Aligned_cols=91  Identities=33%  Similarity=0.580  Sum_probs=75.8

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |++++.+++...++..+.+.|+++++++++++....+                ...             .....+||+|+
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~li   51 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI   51 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEE
Confidence            5788999999999999999999999999999998652                111             12345899999


Q ss_pred             EcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHh
Q 016237           91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL  130 (392)
Q Consensus        91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~L  130 (392)
                      +|||..... ...+..+.+++++...++++++++|.|+++|
T Consensus        52 i~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          52 LPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             ECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            999976433 2247899999999999999999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.76  E-value=1.2e-08  Score=92.26  Aligned_cols=100  Identities=27%  Similarity=0.391  Sum_probs=70.7

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+|+.++|.+  .-.....+|+.+|++++.+..+.-                 .             -.+....+||+
T Consensus         2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~dl-----------------~-------------~~~~~l~~~~~   49 (259)
T PF13507_consen    2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHINDL-----------------L-------------SGESDLDDFDG   49 (259)
T ss_dssp             -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCHH-----------------H-------------TTS--GCC-SE
T ss_pred             CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEec-----------------c-------------cccCchhhCcE
Confidence            589999999998  666778899999999998875420                 0             01113458999


Q ss_pred             EEEcCCCCc-ccc----------cCCHHHHHHHHHHHhC-CCeEEEEchhhHHhhcCcccCCee
Q 016237           89 LVIPGGRAP-EYL----------AMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRK  140 (392)
Q Consensus        89 iiipGG~~~-~~~----------~~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~agll~g~~  140 (392)
                      |++|||.+. +.+          ..+..+.+.|++++++ ++++.+||+|.++|.+.|||.|.+
T Consensus        50 lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~  113 (259)
T PF13507_consen   50 LVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGE  113 (259)
T ss_dssp             EEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT--
T ss_pred             EEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCcc
Confidence            999999753 222          2345678899999999 999999999999999999998843

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.75  E-value=1.7e-08  Score=85.49  Aligned_cols=83  Identities=24%  Similarity=0.348  Sum_probs=65.0

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+||..+|..-.    -..+|++.|+++.++...                                  ++  ..+||+
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~----------------------------------~~--l~~~D~   42 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN----------------------------------ND--FDSIDR   42 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH----------------------------------HH--HhCCCE
Confidence            58999999987643    667888888876665421                                  22  237999


Q ss_pred             EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      |++|||.+..  .+.++..+.+.|+++.+ +|++++||.|+.+|++
T Consensus        43 LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~   87 (179)
T PRK13526         43 LVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK   87 (179)
T ss_pred             EEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence            9999997644  45666779999999885 7899999999999998

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.73  E-value=3e-08  Score=87.18  Aligned_cols=91  Identities=20%  Similarity=0.292  Sum_probs=73.4

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||++++.++........+.+.|++.|+++++...+.                                ..+  ..+||+
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--------------------------------~~~--l~~~d~   46 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--------------------------------PGD--LPDCDA   46 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--------------------------------hHH--hccCCE
Confidence            3799999999998888899999999998887765431                                112  236999


Q ss_pred             EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||.+..  .+..+..+.++|++++++++++.+||.|.++|+.+
T Consensus        47 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         47 LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            9999996432  23344568999999999999999999999999987

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.70  E-value=1.6e-07  Score=73.19  Aligned_cols=91  Identities=34%  Similarity=0.592  Sum_probs=74.9

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV  283 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi  283 (392)
                      +.+++.+++...++..+.+.|+.+++++++++..++.                ...             .....+||+++
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~li   51 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI   51 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEE
Confidence            3567788888888999999999999999999998653                111             22446899999


Q ss_pred             EcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHH
Q 016237          284 VPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQIL  323 (392)
Q Consensus       284 ipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~L  323 (392)
                      +|||..... ...++.+.++++++..++++++++|.|+++|
T Consensus        52 i~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          52 LPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             ECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            999876433 2357999999999999999999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.67  E-value=4.1e-08  Score=84.82  Aligned_cols=84  Identities=26%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      ||+|+..+|...    ...+.|++.|+++.++++..                                  +  .++||+|
T Consensus         1 ~igvl~~qg~~~----e~~~~l~~~g~~~~~v~~~~----------------------------------~--l~~~d~l   40 (184)
T TIGR03800         1 KIGVLALQGAVR----EHARALEALGVEGVEVKRPE----------------------------------Q--LDEIDGL   40 (184)
T ss_pred             CEEEEEccCCHH----HHHHHHHHCCCEEEEECChH----------------------------------H--hccCCEE
Confidence            589999988653    36699999999998886521                                  1  2379999


Q ss_pred             EEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           90 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        90 iipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||||.+..  .+..+..+.+.|++++++++++.+||.|.++|++.
T Consensus        41 iipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        41 IIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             EECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            999997532  24455678899999999999999999999999987

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.64  E-value=4e-08  Score=88.91  Aligned_cols=99  Identities=24%  Similarity=0.375  Sum_probs=71.7

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .|++|+.++|.+  .-.....+|+.+|++++.+..+.                              ..-.+.++++||+
T Consensus         2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~d------------------------------l~~~~~~l~~~~~   49 (259)
T PF13507_consen    2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHIND------------------------------LLSGESDLDDFDG   49 (259)
T ss_dssp             -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCH------------------------------HHTTS--GCC-SE
T ss_pred             CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEe------------------------------cccccCchhhCcE
Confidence            589999999988  78888999999999988876531                              1111124568999


Q ss_pred             EEEcCCCCh-hhc----------cCChHHHHHHHHHHHc-CCcEEEEehHHHHHHHcCCCCCc
Q 016237          282 LVVPGGRAP-EYL----------ALNENVIALVKDFMEA-KKPVASICHGQQILAAAGVLKGK  332 (392)
Q Consensus       282 viipgg~~~-~~~----------~~~~~l~~~l~~~~~~-g~~i~aiC~G~~~La~aglL~g~  332 (392)
                      |+||||++. +++          ..++.+.+.|++|.++ ++++.+||+|.++|.++|||.+.
T Consensus        50 lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~  112 (259)
T PF13507_consen   50 LVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG  112 (259)
T ss_dssp             EEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred             EEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence            999999853 222          2346778999999999 99999999999999999999984

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.61  E-value=2.7e-07  Score=68.54  Aligned_cols=91  Identities=32%  Similarity=0.571  Sum_probs=73.2

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+++..+++...++..+.+.+++.++++++++....+                ...             .....+||+++
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~~~li   51 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI   51 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCc----------------ccc-------------cCCcccCCEEE
Confidence            4678888888889999999999999999999987642                100             22345899999


Q ss_pred             EcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHh
Q 016237           91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL  130 (392)
Q Consensus        91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~L  130 (392)
                      +|||..... ...+..+.+++++.++++++++++|.|++++
T Consensus        52 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          52 LPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             ECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            999976433 2247899999999999999999999998764

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.54  E-value=2.8e-07  Score=80.96  Aligned_cols=91  Identities=23%  Similarity=0.341  Sum_probs=72.6

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      +|+++++..+........+.+.|+..|+++++...+.                                .+  +..+||+
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--------------------------------~~--~l~~~d~   46 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--------------------------------PG--DLPDCDA   46 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--------------------------------hH--HhccCCE
Confidence            3789999999888888888899999998777665420                                01  1236999


Q ss_pred             EEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||||||.+..  .+..+..+.++|+++.++++++.+||.|.++|+.+
T Consensus        47 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         47 LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            9999997632  24455678999999999999999999999999998

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.47  E-value=6.2e-07  Score=77.92  Aligned_cols=85  Identities=24%  Similarity=0.381  Sum_probs=64.8

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+...|-..    ...+.|+.+|+++.++++.                                  .+  .++||+
T Consensus         2 m~~~i~~~~g~~~----~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~dg   41 (189)
T PRK13525          2 MKIGVLALQGAVR----EHLAALEALGAEAVEVRRP----------------------------------ED--LDEIDG   41 (189)
T ss_pred             CEEEEEEcccCHH----HHHHHHHHCCCEEEEeCCh----------------------------------hH--hccCCE
Confidence            5899999876442    3357788899988887531                                  11  237999


Q ss_pred             EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||....  .+..+..+.+++++++++++++.+||.|.++|+.+
T Consensus        42 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         42 LILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             EEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            9999996422  23445667899999999999999999999999975

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.47  E-value=9.4e-07  Score=65.57  Aligned_cols=90  Identities=36%  Similarity=0.577  Sum_probs=70.9

Q ss_pred             EEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEE
Q 016237          205 LFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVV  284 (392)
Q Consensus       205 ~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vii  284 (392)
                      .++..++....++..+.+.|++.++++.+++......                ..             .....+||++++
T Consensus         2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~lii   52 (92)
T cd03128           2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPV----------------ES-------------DVDLDDYDGLIL   52 (92)
T ss_pred             EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcc----------------cc-------------cCCcccCCEEEE
Confidence            4666777777788899999999999999999875530                00             224468999999


Q ss_pred             cCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHH
Q 016237          285 PGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQIL  323 (392)
Q Consensus       285 pgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~L  323 (392)
                      |||..... ...+..+.+++++++.++++++++|.|++++
T Consensus        53 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          53 PGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             CCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            99887433 2357999999999999999999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.46  E-value=7.1e-07  Score=77.11  Aligned_cols=84  Identities=24%  Similarity=0.312  Sum_probs=65.3

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      |+.++...|..    ....+.|++.|+++.++++.                                  ++  .++||++
T Consensus         1 ~igvl~~qg~~----~e~~~~l~~~g~~~~~v~~~----------------------------------~~--l~~~d~l   40 (184)
T TIGR03800         1 KIGVLALQGAV----REHARALEALGVEGVEVKRP----------------------------------EQ--LDEIDGL   40 (184)
T ss_pred             CEEEEEccCCH----HHHHHHHHHCCCEEEEECCh----------------------------------HH--hccCCEE
Confidence            46777777643    33668999999888777541                                  11  2369999


Q ss_pred             EEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +||||.+..  .+..+..+.++|++++++++++.++|.|.++|+++
T Consensus        41 iipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        41 IIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             EECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            999997642  34556778999999999999999999999999998

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.45  E-value=4.6e-07  Score=76.83  Aligned_cols=83  Identities=23%  Similarity=0.317  Sum_probs=62.2

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .++.|+...|...    .-...|++.|+++.++..                                  .++  ..+||.
T Consensus         3 ~~igVLalqG~~~----Eh~~al~~lG~~v~~v~~----------------------------------~~~--l~~~D~   42 (179)
T PRK13526          3 QKVGVLAIQGGYQ----KHADMFKSLGVEVKLVKF----------------------------------NND--FDSIDR   42 (179)
T ss_pred             cEEEEEECCccHH----HHHHHHHHcCCcEEEECC----------------------------------HHH--HhCCCE
Confidence            5788888887542    266777787776554431                                  111  237899


Q ss_pred             EEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237          282 LVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAA  325 (392)
Q Consensus       282 viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~  325 (392)
                      ||+|||.+..  .+..+..+.+.|+++.+ +|++.++|.|+++|++
T Consensus        43 LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~   87 (179)
T PRK13526         43 LVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK   87 (179)
T ss_pred             EEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence            9999997654  45566779999999885 7899999999999999

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.42  E-value=1.3e-06  Score=76.62  Aligned_cols=79  Identities=29%  Similarity=0.386  Sum_probs=62.1

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCc---cc
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAP---EY   99 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~---~~   99 (392)
                      =+..-++.|+++|.++.++++..+                                +++  .+||+||+|||...   ..
T Consensus        12 ~y~e~~~~l~~~G~~v~~~s~~~~--------------------------------~~l--~~~D~lilPGG~~~~~~~~   57 (198)
T cd03130          12 YYPENLELLEAAGAELVPFSPLKD--------------------------------EEL--PDADGLYLGGGYPELFAEE   57 (198)
T ss_pred             ccHHHHHHHHHCCCEEEEECCCCC--------------------------------CCC--CCCCEEEECCCchHHHHHH
Confidence            355567888899999999886421                                112  24999999999643   34


Q ss_pred             ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237          100 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV  135 (392)
Q Consensus       100 ~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl  135 (392)
                      +.++..+.+.|+++.+++++|.+||.|.++|++...
T Consensus        58 L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~~   93 (198)
T cd03130          58 LSANQSMRESIRAFAESGGPIYAECGGLMYLGESLD   93 (198)
T ss_pred             HHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHhh
Confidence            666778999999999999999999999999998643

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.41  E-value=1.7e-06  Score=75.75  Aligned_cols=85  Identities=22%  Similarity=0.316  Sum_probs=65.1

Q ss_pred             CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCC
Q 016237          210 DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRA  289 (392)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~  289 (392)
                      |..-..-+..-++.|+++|.++.++++..+                                ++  ..++|+||+|||..
T Consensus         6 d~aF~f~y~e~~~~l~~~G~~v~~~s~~~~--------------------------------~~--l~~~D~lilPGG~~   51 (198)
T cd03130           6 DEAFNFYYPENLELLEAAGAELVPFSPLKD--------------------------------EE--LPDADGLYLGGGYP   51 (198)
T ss_pred             cCccccccHHHHHHHHHCCCEEEEECCCCC--------------------------------CC--CCCCCEEEECCCch
Confidence            433444566678889999999988876311                                11  22489999999864


Q ss_pred             h---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCC
Q 016237          290 P---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGV  328 (392)
Q Consensus       290 ~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~agl  328 (392)
                      .   ..+..+..+.+.|+++.++|++|.+||.|.++|++...
T Consensus        52 ~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~~   93 (198)
T cd03130          52 ELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESLD   93 (198)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHhh
Confidence            3   34667778999999999999999999999999998743

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.32  E-value=6e-06  Score=74.15  Aligned_cols=95  Identities=26%  Similarity=0.232  Sum_probs=71.3

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      ||+++.++-....+  .+..+.+.|++.|++++++.+..+.                        .    ...  +..+|
T Consensus         1 ~m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~------------------------~----~~~--~~~~~   48 (234)
T PRK07053          1 MMKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD------------------------L----ETL--DALEP   48 (234)
T ss_pred             CCceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc------------------------c----CCC--CccCC
Confidence            46777777666555  7778899999999998888664221                        0    011  23479


Q ss_pred             CEEEEcCCCCh--h--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          280 DALVVPGGRAP--E--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       280 D~viipgg~~~--~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |.|||+||...  +  ..+.-..+.++|+++.+.++|+.+||.|.++|+.+
T Consensus        49 d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         49 DLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             CEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            99999998642  1  13445688899999999999999999999999988

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.32  E-value=5.4e-06  Score=74.58  Aligned_cols=93  Identities=17%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+....++..+.  ..+.++++|+++++.....+                       ..      +.. +..+||+
T Consensus         1 m~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g-----------------------~~------~p~-~~~~~d~   48 (235)
T PRK08250          1 MRVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAG-----------------------EA------LPE-NADGFDL   48 (235)
T ss_pred             CeEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCC-----------------------CC------CCC-CccccCE
Confidence            4799999999995555  45777889998888654321                       01      110 2347999


Q ss_pred             EEEcCCCC-ccc-ccCC-----HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRA-PEY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~-~~~-~~~~-----~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |||.||.. +.. ....     ....+||++++++++++.+||.|.++|+.+
T Consensus        49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            99999953 221 1112     466899999999999999999999999986

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.31  E-value=1.9e-06  Score=77.18  Aligned_cols=87  Identities=25%  Similarity=0.386  Sum_probs=66.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      |+||+||..+|...    ...+.|+++|.++.+++..                                  +++  .++|
T Consensus         1 ~m~igVLa~qG~~~----e~~~aL~~lG~ev~~v~~~----------------------------------~~L--~~~D   40 (248)
T PLN02832          1 MMAIGVLALQGSFN----EHIAALRRLGVEAVEVRKP----------------------------------EQL--EGVS   40 (248)
T ss_pred             CcEEEEEeCCCchH----HHHHHHHHCCCcEEEeCCH----------------------------------HHh--ccCC
Confidence            35899999998653    3368888899888776542                                  222  2689


Q ss_pred             EEEEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        88 ~iiipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      .||+|||.+.  ..+.....+.+.|+++.++++++.++|.|..+|++..
T Consensus        41 gLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~   89 (248)
T PLN02832         41 GLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERA   89 (248)
T ss_pred             EEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence            9999998753  2244444688999999999999999999999999874

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.30  E-value=3.6e-06  Score=73.16  Aligned_cols=86  Identities=24%  Similarity=0.358  Sum_probs=63.7

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ++++.++...+..    ....+.|+..|+++..+++.                                  +  +.++||
T Consensus         1 ~m~~~i~~~~g~~----~~~~~~l~~~g~~~~~~~~~----------------------------------~--~l~~~d   40 (189)
T PRK13525          1 MMKIGVLALQGAV----REHLAALEALGAEAVEVRRP----------------------------------E--DLDEID   40 (189)
T ss_pred             CCEEEEEEcccCH----HHHHHHHHHCCCEEEEeCCh----------------------------------h--HhccCC
Confidence            3567777766533    33357788888887776431                                  1  134799


Q ss_pred             EEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .|++|||....  .+..+..+.+++|+++++++||.+||.|.++|+.+
T Consensus        41 giii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         41 GLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             EEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            99999997532  24556777899999999999999999999999985

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.30  E-value=6.5e-06  Score=73.92  Aligned_cols=94  Identities=22%  Similarity=0.165  Sum_probs=69.9

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ||+|+|+-....+  .+....+.|++.|++++++....+.                            ....+  ..+||
T Consensus         2 m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~----------------------------~~~~~--~~~~d   49 (234)
T PRK07053          2 MKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD----------------------------LETLD--ALEPD   49 (234)
T ss_pred             CceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc----------------------------cCCCC--ccCCC
Confidence            4689988876666  5666789999999999988764321                            00112  23799


Q ss_pred             EEEEcCCC-Cccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGR-APEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~-~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|||+||. ++..   ...-..+.++|+++.++++++.+||.|.++|+.+
T Consensus        50 ~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         50 LLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             EEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            99999986 3321   1223478899999999999999999999999987

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.29  E-value=2.3e-06  Score=75.09  Aligned_cols=87  Identities=23%  Similarity=0.267  Sum_probs=65.6

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+||=+..-   .+....+.|+++|+++.+++..                                  .++  .+||+
T Consensus         1 ~~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~~--~~~d~   41 (200)
T PRK13143          1 MMIVIIDYGVG---NLRSVSKALERAGAEVVITSDP----------------------------------EEI--LDADG   41 (200)
T ss_pred             CeEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH----------------------------------HHH--ccCCE
Confidence            36888876643   4567789999999998887421                                  112  37999


Q ss_pred             EEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           89 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        89 iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      |++|||.... .+...+.+.++|+++.++++|+.+||.|.++|+++.
T Consensus        42 iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~   88 (200)
T PRK13143         42 IVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFESS   88 (200)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence            9999964322 234456789999999999999999999999999864

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.28  E-value=2.7e-06  Score=74.28  Aligned_cols=86  Identities=15%  Similarity=0.212  Sum_probs=65.8

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+++.++...  .+......+...|+++.++++..                                  +  +.++|+|+
T Consensus         1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~----------------------------------~--~~~~d~li   42 (194)
T cd01750           1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE----------------------------------G--LGDADLII   42 (194)
T ss_pred             CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC----------------------------------C--CCCCCEEE
Confidence            4677776544  56777788888999999987642                                  1  23789999


Q ss_pred             EcCCCCc-cccc--CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           91 IPGGRAP-EYLA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        91 ipGG~~~-~~~~--~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      +|||... ..+.  ++..+.+.|+++.+++++|.+||.|.++|++.-
T Consensus        43 lpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          43 LPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             ECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence            9999743 2222  245689999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.23  E-value=1.4e-05  Score=71.99  Aligned_cols=93  Identities=18%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      ++++++....++  +.....+.+++.|+++++..+..+                       ..+      .+ +.++||+
T Consensus         1 m~i~vi~h~~~e--~~g~~~~~~~~~g~~~~~~~~~~g-----------------------~~~------p~-~~~~~d~   48 (235)
T PRK08250          1 MRVHFIIHESFE--APGAYLKWAENRGYDISYSRVYAG-----------------------EAL------PE-NADGFDL   48 (235)
T ss_pred             CeEEEEecCCCC--CchHHHHHHHHCCCeEEEEEccCC-----------------------CCC------CC-CccccCE
Confidence            367888888888  566677888889988888654311                       011      10 2357999


Q ss_pred             EEEcCCCCh-hh----ccCC--hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAP-EY----LALN--ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~-~~----~~~~--~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |||.||... ..    .+.-  ....+||++++++++|+.+||.|.++|+.+
T Consensus        49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            999999642 21    1111  467899999999999999999999999988

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.18  E-value=7.3e-06  Score=88.38  Aligned_cols=108  Identities=18%  Similarity=0.207  Sum_probs=78.9

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC--CCCC
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--DPSK   85 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~   85 (392)
                      .+||+|+.++|.+  .=.....+|.++|+++..+..+.-.                 ...    +.  .++.++  +..+
T Consensus       977 kpkvaIl~~pGtN--ce~d~a~Af~~aG~~~~~v~~~dl~-----------------~~~----i~--~s~~~~~~~l~~ 1031 (1239)
T TIGR01857       977 KPRVVIPVFPGTN--SEYDSAKAFEKEGAEVNLVIFRNLN-----------------EEA----LV--ESVETMVDEIDK 1031 (1239)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEEecCc-----------------ccc----cc--cchhhhhccccc
Confidence            5799999999998  5566677888899998888754210                 000    00  011111  2348


Q ss_pred             ccEEEEcCCCCc-cc----------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCee
Q 016237           86 YDGLVIPGGRAP-EY----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  140 (392)
Q Consensus        86 ~D~iiipGG~~~-~~----------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~  140 (392)
                      |++|++|||++. +.          +..++.+.+-+++++++++++.+||+|.++|.+.|||.+.+
T Consensus      1032 ~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~ 1097 (1239)
T TIGR01857      1032 SQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGN 1097 (1239)
T ss_pred             CcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCcc
Confidence            999999999852 22          24567899999999999999999999999999999998543

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.17  E-value=8.5e-06  Score=71.55  Aligned_cols=85  Identities=19%  Similarity=0.220  Sum_probs=63.5

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      |+.|+-+..-   ......+.|++.|+++.+++..                                  .+  .++||++
T Consensus         2 ~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--~~~~d~i   42 (200)
T PRK13143          2 MIVIIDYGVG---NLRSVSKALERAGAEVVITSDP----------------------------------EE--ILDADGI   42 (200)
T ss_pred             eEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH----------------------------------HH--HccCCEE
Confidence            4555555433   4677889999999887776320                                  11  2379999


Q ss_pred             EEcCCCCh-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +||||..+ +.+...+.+.++|+++.++++|+.+||.|.++|+++
T Consensus        43 ii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~   87 (200)
T PRK13143         43 VLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES   87 (200)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            99996443 234556778899999999999999999999999986

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.15  E-value=1e-05  Score=87.94  Aligned_cols=101  Identities=18%  Similarity=0.265  Sum_probs=78.1

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+|+.++|.+  .-.....+|..+||++..+..+.                  +.+            ......+|+
T Consensus      1037 ~pkVaVl~~pGtN--~~~e~~~Af~~aGf~~~~V~~~d------------------l~~------------~~~~L~~~~ 1084 (1307)
T PLN03206       1037 KPKVAIIREEGSN--GDREMAAAFYAAGFEPWDVTMSD------------------LLN------------GRISLDDFR 1084 (1307)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeee------------------ccc------------cccccccee
Confidence            5799999999998  55667788889999987776542                  000            011234799


Q ss_pred             EEEEcCCCCc-c----------cccCCHHHHHHHHHHHh-CCCeEEEEchhhHHhhcCcccCCee
Q 016237           88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRK  140 (392)
Q Consensus        88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~~-~~~~i~aic~G~~~La~agll~g~~  140 (392)
                      +|++|||++. +          .+..++.+.+-++++++ +++++.+||+|.++|.+.|||.|-+
T Consensus      1085 glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206       1085 GIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred             EEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence            9999999742 1          23567889999999995 5999999999999999999998754

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.14  E-value=1.1e-05  Score=70.39  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=63.3

Q ss_pred             EEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEE
Q 016237          205 LFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVV  284 (392)
Q Consensus       205 ~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vii  284 (392)
                      +++.++...  .+......++..|++++++++..                             +       +.++|+||+
T Consensus         2 ~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~-----------------------------~-------~~~~d~lil   43 (194)
T cd01750           2 AVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE-----------------------------G-------LGDADLIIL   43 (194)
T ss_pred             EeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC-----------------------------C-------CCCCCEEEE
Confidence            445555433  56677777888888888887630                             1       347899999


Q ss_pred             cCCCCh-hhccC--ChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          285 PGGRAP-EYLAL--NENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       285 pgg~~~-~~~~~--~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      |||... ..+..  +..+.+.|+++.++|+||.++|.|.++|++.-
T Consensus        44 pGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          44 PGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             CCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence            999753 22322  55789999999999999999999999999875

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=98.13  E-value=3.9e-06  Score=72.56  Aligned_cols=83  Identities=28%  Similarity=0.418  Sum_probs=63.5

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+++..+|...    ...+.|++.|+++..+++..                                  +  ..+||+|+
T Consensus         1 igvl~~qg~~~----e~~~~l~~~g~~v~~v~~~~----------------------------------~--l~~~dgii   40 (183)
T cd01749           1 IGVLALQGDFR----EHIRALERLGVEVIEVRTPE----------------------------------D--LEGIDGLI   40 (183)
T ss_pred             CEEEEecCCcH----HHHHHHHHCCCeEEEECCHH----------------------------------H--hccCCEEE
Confidence            57788777664    22389999999998887631                                  1  23799999


Q ss_pred             EcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           91 IPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        91 ipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|||...  .....+..+.++|+++.++++++.++|.|..+|+++
T Consensus        41 i~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~   85 (183)
T cd01749          41 IPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE   85 (183)
T ss_pred             ECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            9999642  113344567899999999999999999999999976

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK06490 glutamine amidotransferase; Provisional

Probab=98.10  E-value=3e-05  Score=69.86  Aligned_cols=97  Identities=19%  Similarity=0.206  Sum_probs=72.4

Q ss_pred             CCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237          198 TGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS  277 (392)
Q Consensus       198 ~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  277 (392)
                      ...+++++++...+.+  ......+.|+..|+++++..+..+.                             .+.+ +.+
T Consensus         4 ~~~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~~-----------------------------~~p~-~l~   51 (239)
T PRK06490          4 ARDKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLGD-----------------------------PLPD-TLE   51 (239)
T ss_pred             cCCCceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCCC-----------------------------CCCC-ccc
Confidence            3457788888777666  6777899999999998888654220                             0111 234


Q ss_pred             CcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +||.++|.||...  +..+....+.+||+++.+.++|+.+||-|.++|+.+
T Consensus        52 ~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         52 DHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             ccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            7999999998753  223334567899999999999999999999999998

>PRK06490 glutamine amidotransferase; Provisional

Probab=98.07  E-value=3.4e-05  Score=69.56  Aligned_cols=94  Identities=24%  Similarity=0.208  Sum_probs=69.5

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+||...+++  ......+.|++.|+++++..+..+.                       .+     .++  ..+||
T Consensus         7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~~-----------------------~~-----p~~--l~~~d   54 (239)
T PRK06490          7 KRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLGD-----------------------PL-----PDT--LEDHA   54 (239)
T ss_pred             CceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCCC-----------------------CC-----CCc--ccccC
Confidence            5789999977776  5556779999999999987654220                       00     122  33799


Q ss_pred             EEEEcCCCC-ccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRA-PEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~-~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +++|.||.. +.. ..-...+.+||++++++++++.+||-|.++|+.+
T Consensus        55 gvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         55 GAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             EEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            999999864 221 1112457899999999999999999999999987

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.06  E-value=1.4e-05  Score=87.36  Aligned_cols=100  Identities=15%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+|+.++|.+  .=.....+|..+||++..+..+.-                              .-...+.++|+
T Consensus      1055 ~p~vail~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl------------------------------~~~~~~l~~~~ 1102 (1310)
T TIGR01735      1055 RPKVAILREQGVN--GDREMAAAFDRAGFEAWDVHMSDL------------------------------LAGRVHLDEFR 1102 (1310)
T ss_pred             CceEEEEECCCCC--CHHHHHHHHHHhCCCcEEEEEecc------------------------------ccCCcchhhee
Confidence            3699999999998  555666788899999888775420                              01111234799


Q ss_pred             EEEEcCCCCc-c----------cccCCHHHHHHHHHHH-hCCCeEEEEchhhHHhh-cCcccCCe
Q 016237           88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR  139 (392)
Q Consensus        88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~-~~~~~i~aic~G~~~La-~agll~g~  139 (392)
                      +|++|||++- +          .+..++.+.+-+++++ ++++++.+||+|.++|. ..|||.|.
T Consensus      1103 ~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1103 GLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             EEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence            9999999731 1          1456788999999999 78999999999999999 88999873

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.06  E-value=2.1e-05  Score=77.78  Aligned_cols=90  Identities=22%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+|.-.+-|+. -+..=++.|++.|.++.++++-..                                ++  ..+||+
T Consensus       246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~--------------------------------~~--l~~~D~  290 (451)
T PRK01077        246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD--------------------------------EA--LPDCDG  290 (451)
T ss_pred             ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC--------------------------------CC--CCCCCE
Confidence            4899998885553 233345778889999999886321                                11  227999


Q ss_pred             EEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||...   ..+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus       291 lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        291 LYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             EEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            999999742   336677889999999999999999999999999876

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=98.06  E-value=1.4e-05  Score=70.39  Aligned_cols=86  Identities=16%  Similarity=0.203  Sum_probs=62.6

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+-+..-+   +....++|++.|+++.+++..                                  +++  .++|.
T Consensus         2 ~~v~iid~~~GN---~~sl~~al~~~g~~v~vv~~~----------------------------------~~l--~~~d~   42 (210)
T CHL00188          2 MKIGIIDYSMGN---LHSVSRAIQQAGQQPCIINSE----------------------------------SEL--AQVHA   42 (210)
T ss_pred             cEEEEEEcCCcc---HHHHHHHHHHcCCcEEEEcCH----------------------------------HHh--hhCCE
Confidence            589999887554   466678888899988887431                                  111  25899


Q ss_pred             EEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++||+..+.   ....+..+.+.|++++++++++.+||.|.++|++.
T Consensus        43 iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~   90 (210)
T CHL00188         43 LVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFET   90 (210)
T ss_pred             EEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhc
Confidence            9999954322   11222356678888899999999999999999875

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.04  E-value=2.3e-05  Score=86.06  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+.++|.+  .-.....+|..+||++..+..+.-                 .         .    .+....+|+
T Consensus      1035 ~pkv~il~~pG~N--~~~e~~~Af~~aG~~~~~v~~~dl-----------------~---------~----~~~~l~~~~ 1082 (1290)
T PRK05297       1035 RPKVAILREQGVN--SHVEMAAAFDRAGFDAIDVHMSDL-----------------L---------A----GRVTLEDFK 1082 (1290)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCCeEEEEeecC-----------------c---------C----CCCChhhCc
Confidence            4699999999998  556677888899999888775420                 0         0    001244899


Q ss_pred             EEEEcCCCCc-c----------cccCCHHHHHHHHHHH-hCCCeEEEEchhhHHhhcCc-ccCC
Q 016237           88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG  138 (392)
Q Consensus        88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~-~~~~~i~aic~G~~~La~ag-ll~g  138 (392)
                      +|++|||++. +          .+..|+.+.+-+++++ ++++++.+||+|.++|.+.| ++.|
T Consensus      1083 ~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1083 GLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             EEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence            9999999642 1          1345788999999987 67999999999999999997 6654

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=98.02  E-value=3.5e-05  Score=67.00  Aligned_cols=91  Identities=27%  Similarity=0.370  Sum_probs=65.5

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCC---CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      ||+|+..+....  .....+.|+++|   +++++.......                            . ..+  ..+|
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~----------------------------~-~~~--~~~~   47 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGE----------------------------L-LPD--LDDY   47 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCC----------------------------C-CCC--cccC
Confidence            577887765553  666778888887   677776554321                            0 122  3489


Q ss_pred             cEEEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           87 DGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        87 D~iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |+|+++||....   .....+.+.++|+++.++++++.+||.|.++|+.+
T Consensus        48 dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          48 DGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             CEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            999999997422   12223678999999999999999999999999876

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=97.99  E-value=2.9e-05  Score=69.69  Aligned_cols=86  Identities=26%  Similarity=0.356  Sum_probs=64.7

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+++.|+.+.|..    ....+.|+++|.++.+++..                                  ++  ..++|
T Consensus         1 ~m~igVLa~qG~~----~e~~~aL~~lG~ev~~v~~~----------------------------------~~--L~~~D   40 (248)
T PLN02832          1 MMAIGVLALQGSF----NEHIAALRRLGVEAVEVRKP----------------------------------EQ--LEGVS   40 (248)
T ss_pred             CcEEEEEeCCCch----HHHHHHHHHCCCcEEEeCCH----------------------------------HH--hccCC
Confidence            4579999988744    34468888888776665431                                  12  23689


Q ss_pred             EEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+|||...  ..+.....+.+.|+++.++|+|+.++|.|-++|++.
T Consensus        41 gLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~   88 (248)
T PLN02832         41 GLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER   88 (248)
T ss_pred             EEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            9999998753  224444568999999999999999999999999976

>PHA03366 FGAM-synthase; Provisional

Probab=97.98  E-value=3.4e-05  Score=84.54  Aligned_cols=97  Identities=21%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ..||+|+.++|.+  .-.....+|..+||++..+..+.-                          .    -... .++|+
T Consensus      1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dL--------------------------~----~~~~-l~~f~ 1074 (1304)
T PHA03366       1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEEL--------------------------K----DGTF-LDEFS 1074 (1304)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeecC--------------------------C----CCCc-cccce
Confidence            4699999999998  556677888899999988876521                          0    0111 34799


Q ss_pred             EEEEcCCCCc-c----------cccCCHHHHHHHHHHHh-CCCeEEEEch-hhHHhhcCcccC
Q 016237           88 GLVIPGGRAP-E----------YLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVK  137 (392)
Q Consensus        88 ~iiipGG~~~-~----------~~~~~~~l~~~l~~~~~-~~~~i~aic~-G~~~La~agll~  137 (392)
                      .|++|||++. +          .+..|+.+.+.++++++ +++.+.+||+ |.++|.+.|+|.
T Consensus      1075 glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1075 GLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             EEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence            9999999853 1          14578899999999995 5999999999 999999999994

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.94  E-value=5.8e-05  Score=81.65  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=80.1

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCC--CCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESV--DVS  277 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~  277 (392)
                      ...|++|+.++|.+  .-.-....|+++|+++..+..+.-.                    .+. +  ...++++  +..
T Consensus       976 ~kpkvaIl~~pGtN--ce~d~a~Af~~aG~~~~~v~~~dl~--------------------~~~-i--~~s~~~~~~~l~ 1030 (1239)
T TIGR01857       976 EKPRVVIPVFPGTN--SEYDSAKAFEKEGAEVNLVIFRNLN--------------------EEA-L--VESVETMVDEID 1030 (1239)
T ss_pred             CCCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEEecCc--------------------ccc-c--ccchhhhhcccc
Confidence            35799999999998  7777788888899988777654210                    000 0  0111111  245


Q ss_pred             CcCEEEEcCCCCh-hhc----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCc
Q 016237          278 GYDALVVPGGRAP-EYL----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGK  332 (392)
Q Consensus       278 ~~D~viipgg~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~  332 (392)
                      +|++|++|||++. +.+          ..++.+.+-+++|.++++++.+||+|-++|.+.|||.+.
T Consensus      1031 ~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1031 KSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred             cCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence            8999999999853 222          345889999999999999999999999999999999853

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.93  E-value=6.3e-05  Score=74.45  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=68.0

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .+|+|.-.+ ..-..+..-++.|++.|.++..+++...                                  .+.++||+
T Consensus       246 ~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~~~----------------------------------~~l~~~D~  290 (451)
T PRK01077        246 VRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPLAD----------------------------------EALPDCDG  290 (451)
T ss_pred             ceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCcCC----------------------------------CCCCCCCE
Confidence            467776666 3333344456888888989888876311                                  11237899


Q ss_pred             EEEcCCCC---hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRA---PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~---~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||+|||..   ...+..+..+.+.|+++.++|++|.|+|.|.++|++.
T Consensus       291 lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        291 LYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             EEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            99999974   2446778889999999999999999999999999977

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.92  E-value=8e-05  Score=64.72  Aligned_cols=90  Identities=30%  Similarity=0.389  Sum_probs=63.9

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcC---CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALE---CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ++++..+...  +.....+.+++++   +++++.-+..+.                            . ..  +..+||
T Consensus         2 i~il~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~~----------------------------~-~~--~~~~~d   48 (188)
T cd01741           2 ILILQHDTPE--GPGLFEDLLREAGAETIEIDVVDVYAGE----------------------------L-LP--DLDDYD   48 (188)
T ss_pred             EEEEECCCCC--CcchHHHHHHhcCCCCceEEEEecCCCC----------------------------C-CC--CcccCC
Confidence            5555555444  3667778888877   566666543210                            0 11  345899


Q ss_pred             EEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .|+++||....   ..+..+.+.++|+++.++++++.+||.|.++|+.+
T Consensus        49 gvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          49 GLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             EEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            99999997532   23344779999999999999999999999999987

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.91  E-value=2.4e-05  Score=68.97  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+|+-+.   ......+.+.|++.|.+++++...                                  .+  ..+||+||
T Consensus         2 i~~~d~~---~~~~~~i~~~l~~~G~~v~~~~~~----------------------------------~~--l~~~d~ii   42 (205)
T PRK13141          2 IAIIDYG---MGNLRSVEKALERLGAEAVITSDP----------------------------------EE--ILAADGVI   42 (205)
T ss_pred             EEEEEcC---CchHHHHHHHHHHCCCeEEEECCH----------------------------------HH--hccCCEEE
Confidence            4555444   334578889999999998886421                                  12  23799999


Q ss_pred             EcCCCCcc-cc--cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           91 IPGGRAPE-YL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        91 ipGG~~~~-~~--~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||||.... .+  ...+.+.++|++++++++++.+||.|.++|+..
T Consensus        43 ipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         43 LPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             ECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence            99974322 11  122357899999999999999999999999986

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.87  E-value=1.9e-05  Score=66.01  Aligned_cols=49  Identities=31%  Similarity=0.617  Sum_probs=42.8

Q ss_pred             CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..|+||||||.++.  .+.....+.+-|+++..+|+|+.+.|.|..+||+-
T Consensus        38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake   88 (194)
T COG0311          38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE   88 (194)
T ss_pred             cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence            68999999998753  26667788999999999999999999999999964

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=97.83  E-value=6.1e-05  Score=66.05  Aligned_cols=75  Identities=24%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc---
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY---   99 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~---   99 (392)
                      .+....+.|++.|+++++++..                                  .+  ..+||+|+|||+.....   
T Consensus        10 ~~~~~~~~l~~~g~~v~v~~~~----------------------------------~~--l~~~d~iiipG~~~~~~~~~   53 (198)
T cd01748          10 NLRSVANALERLGAEVIITSDP----------------------------------EE--ILSADKLILPGVGAFGDAMA   53 (198)
T ss_pred             hHHHHHHHHHHCCCeEEEEcCh----------------------------------HH--hccCCEEEECCCCcHHHHHH
Confidence            5667789999999998887632                                  11  23699999999743321   


Q ss_pred             ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          100 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       100 ~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ...+..+.++++++.+++++|.+||.|.++|+.+
T Consensus        54 ~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~   87 (198)
T cd01748          54 NLRERGLIEALKEAIASGKPFLGICLGMQLLFES   87 (198)
T ss_pred             HHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence            1223457899999999999999999999999997

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=97.82  E-value=8.6e-05  Score=81.09  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ..||+|+.++|.+  .-.....+|..+||++..+..+.-                          .....     .++|+
T Consensus       929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl--------------------------~~~~~-----l~~f~  975 (1202)
T TIGR01739       929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITEL--------------------------KKTDF-----LDTFS  975 (1202)
T ss_pred             CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEeccC--------------------------CCCCc-----hhheE
Confidence            4689999999998  556677888899999988876531                          00011     23799


Q ss_pred             EEEEcCCCCc-----------ccccCCHHHHHHHHHHHh-CCCeEEEEch-hhHHhhcCcccCC
Q 016237           88 GLVIPGGRAP-----------EYLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVKG  138 (392)
Q Consensus        88 ~iiipGG~~~-----------~~~~~~~~l~~~l~~~~~-~~~~i~aic~-G~~~La~agll~g  138 (392)
                      .|++|||.+-           ..+..++.+.+.++++++ +++++.+||+ |.++|.+.|++..
T Consensus       976 glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       976 GLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred             EEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence            9999998752           114568899999999995 5999999999 9999999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.82  E-value=8.4e-05  Score=65.68  Aligned_cols=88  Identities=19%  Similarity=0.183  Sum_probs=57.5

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCe--EEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS--VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~--v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |||+|+=|..-+   +......|++.|++  +.+.+.                                  .+++  .++
T Consensus         2 ~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~~----------------------------------~~~l--~~~   42 (209)
T PRK13146          2 MTVAIIDYGSGN---LRSAAKALERAGAGADVVVTAD----------------------------------PDAV--AAA   42 (209)
T ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCCccEEEECC----------------------------------HHHh--cCC
Confidence            589988776554   45556888888884  333321                                  2222  379


Q ss_pred             cEEEEcCCCCcc----cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237           87 DGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV  135 (392)
Q Consensus        87 D~iiipGG~~~~----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl  135 (392)
                      |.|||||+....    .+........+++..+++++|+.+||.|.++|++++.
T Consensus        43 d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~   95 (209)
T PRK13146         43 DRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGL   95 (209)
T ss_pred             CEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhccc
Confidence            999999974321    1222222334455556789999999999999999753

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.82  E-value=0.00011  Score=80.24  Aligned_cols=100  Identities=15%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..|++|+.++|.+  .-......|..+||++..+..+.-                 .   .+          .....+|+
T Consensus      1037 ~pkVaVl~~pGtN--~~~e~~~Af~~aGf~~~~V~~~dl-----------------~---~~----------~~~L~~~~ 1084 (1307)
T PLN03206       1037 KPKVAIIREEGSN--GDREMAAAFYAAGFEPWDVTMSDL-----------------L---NG----------RISLDDFR 1084 (1307)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeeec-----------------c---cc----------ccccccee
Confidence            5799999999998  777888889999998776654310                 0   00          12245899


Q ss_pred             EEEEcCCCCh-h----------hccCChHHHHHHHHHHH-cCCcEEEEehHHHHHHHcCCCCCc
Q 016237          281 ALVVPGGRAP-E----------YLALNENVIALVKDFME-AKKPVASICHGQQILAAAGVLKGK  332 (392)
Q Consensus       281 ~viipgg~~~-~----------~~~~~~~l~~~l~~~~~-~g~~i~aiC~G~~~La~aglL~g~  332 (392)
                      .|++|||++. +          .+..++.+.+.+++|++ +++++.+||+|-++|.+.|||.|.
T Consensus      1085 glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~ 1148 (1307)
T PLN03206       1085 GIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGP 1148 (1307)
T ss_pred             EEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCC
Confidence            9999999842 1          23456889999999995 599999999999999999999875

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.81  E-value=5.8e-05  Score=65.26  Aligned_cols=70  Identities=31%  Similarity=0.550  Sum_probs=55.6

Q ss_pred             HHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh--hhccCChHH
Q 016237          222 QSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP--EYLALNENV  299 (392)
Q Consensus       222 ~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~--~~~~~~~~l  299 (392)
                      +.|++.|+++..+++.                                  .  +.+++|.+|+|||...  .....+..+
T Consensus        15 ~~l~~~g~~v~~v~~~----------------------------------~--~l~~~dgiii~Gg~~~~~~~~~~~~~~   58 (183)
T cd01749          15 RALERLGVEVIEVRTP----------------------------------E--DLEGIDGLIIPGGESTTIGKLLRRTGL   58 (183)
T ss_pred             HHHHHCCCeEEEECCH----------------------------------H--HhccCCEEEECCchHHHHHHHHHhCCH
Confidence            8888999888887652                                  0  1347899999998752  224456678


Q ss_pred             HHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          300 IALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       300 ~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      .++|+++.++++|+.++|.|.++|+.+-
T Consensus        59 ~~~i~~~~~~g~PvlGiC~G~qlL~~~~   86 (183)
T cd01749          59 LDPLREFIRAGKPVFGTCAGLILLAKEV   86 (183)
T ss_pred             HHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence            9999999999999999999999999773

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.80  E-value=6.9e-05  Score=64.02  Aligned_cols=88  Identities=24%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      |++|+|+=|.--   .+.....+|+++|+++.+.+.                                  .+++  ...|
T Consensus         1 m~~i~IIDyg~G---NL~Sv~~Aler~G~~~~vs~d----------------------------------~~~i--~~AD   41 (204)
T COG0118           1 MMMVAIIDYGSG---NLRSVKKALERLGAEVVVSRD----------------------------------PEEI--LKAD   41 (204)
T ss_pred             CCEEEEEEcCcc---hHHHHHHHHHHcCCeeEEecC----------------------------------HHHH--hhCC
Confidence            357888876544   577788889999988766432                                  1222  3689


Q ss_pred             EEEEcCCCC---cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           88 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        88 ~iiipGG~~---~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      .||+||=-.   ++.-.+...+.+.|++....++|+.+||-|.++|.+.+
T Consensus        42 ~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~S   91 (204)
T COG0118          42 KLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFERS   91 (204)
T ss_pred             EEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence            999999422   23323344899999999999999999999999998754

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=97.80  E-value=7.5e-05  Score=65.01  Aligned_cols=87  Identities=14%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+=  ..+ .......+.|++.|++++++..+..                              ..+++  .+||+
T Consensus         2 ~~iliid--~~d-sf~~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~l--~~~d~   46 (190)
T PRK06895          2 TKLLIIN--NHD-SFTFNLVDLIRKLGVPMQVVNVEDL------------------------------DLDEV--ENFSH   46 (190)
T ss_pred             cEEEEEe--CCC-chHHHHHHHHHHcCCcEEEEECCcc------------------------------ChhHh--ccCCE
Confidence            4566664  333 3444588999999999999875421                              12222  36999


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |||.||.+...  ..+.+.++|++ +++++|+.+||-|.++|+.+
T Consensus        47 iIi~gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         47 ILISPGPDVPR--AYPQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             EEECCCCCChH--HhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            99999876322  24567888886 78899999999999999987

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.79  E-value=0.0001  Score=80.93  Aligned_cols=101  Identities=13%  Similarity=0.155  Sum_probs=78.0

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      +..+++|+.++|.+  .-......|..+||++..+..+.                              ..-...+.++|
T Consensus      1054 ~~p~vail~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d------------------------------l~~~~~~l~~~ 1101 (1310)
T TIGR01735      1054 VRPKVAILREQGVN--GDREMAAAFDRAGFEAWDVHMSD------------------------------LLAGRVHLDEF 1101 (1310)
T ss_pred             CCceEEEEECCCCC--CHHHHHHHHHHhCCCcEEEEEec------------------------------cccCCcchhhe
Confidence            35789999999998  67777778989998877765431                              11111234579


Q ss_pred             CEEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEehHHHHHH-HcCCCCCc
Q 016237          280 DALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICHGQQILA-AAGVLKGK  332 (392)
Q Consensus       280 D~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~~La-~aglL~g~  332 (392)
                      +.|++|||+.. +.          +..++.+.+.+++|+ ++++++.+||+|-++|. ..|||.|.
T Consensus      1102 ~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1102 RGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             eEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence            99999999742 11          345788999999999 88999999999999999 99999874

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.78  E-value=8.5e-05  Score=63.94  Aligned_cols=75  Identities=27%  Similarity=0.381  Sum_probs=56.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN  298 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~  298 (392)
                      ...+.+++.|+++.++..+..                               .++....+||.|+++||.+..  ...+.
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgiil~GG~~~~--~~~~~   57 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD-------------------------------AEEILKLDPDGIFLSNGPGDP--ALLDE   57 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEECCCCCCh--hHhHH
Confidence            357788888888888765411                               111223479999999997521  12467


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          299 VIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       299 l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++++++.++++|+.+||.|.++|+.+
T Consensus        58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~   85 (178)
T cd01744          58 AIKTVRKLLGKKIPIFGICLGHQLLALA   85 (178)
T ss_pred             HHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence            8889999999999999999999999987

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.78  E-value=6.4e-05  Score=64.72  Aligned_cols=75  Identities=29%  Similarity=0.362  Sum_probs=56.4

Q ss_pred             HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCHH
Q 016237           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDS  105 (392)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~~  105 (392)
                      ...+.|+++|.++.++..+..                               .++.+..+||+|+++||.+..  .....
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgiil~GG~~~~--~~~~~   57 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD-------------------------------AEEILKLDPDGIFLSNGPGDP--ALLDE   57 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEECCCCCCh--hHhHH
Confidence            357788889998888865421                               112223379999999997421  12367


Q ss_pred             HHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          106 VIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       106 l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..++++++.++++|+.+||.|.++|+.+
T Consensus        58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~   85 (178)
T cd01744          58 AIKTVRKLLGKKIPIFGICLGHQLLALA   85 (178)
T ss_pred             HHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence            8889999999999999999999999975

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=97.77  E-value=0.00011  Score=63.87  Aligned_cols=75  Identities=13%  Similarity=0.283  Sum_probs=55.6

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .....+.|++.|++++++..+..                              ..++  ...||.|||.||.+...  ..
T Consensus        14 ~~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~--l~~~d~iIi~gGp~~~~--~~   59 (190)
T PRK06895         14 TFNLVDLIRKLGVPMQVVNVEDL------------------------------DLDE--VENFSHILISPGPDVPR--AY   59 (190)
T ss_pred             HHHHHHHHHHcCCcEEEEECCcc------------------------------ChhH--hccCCEEEECCCCCChH--Hh
Confidence            33489999999999888865411                              0112  23689999999887322  23


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.+.++|++ +++++|+.+||.|.++|+.+
T Consensus        60 ~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         60 PQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             hHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            567788876 67899999999999999988

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.76  E-value=9.5e-05  Score=65.22  Aligned_cols=75  Identities=20%  Similarity=0.337  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh-hhc-
Q 016237          216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP-EYL-  293 (392)
Q Consensus       216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~-~~~-  293 (392)
                      ....+.+.|++.|.+++++..                               +   ++  ..+||.|||||+... +.. 
T Consensus        11 ~~~~i~~~l~~~G~~v~~~~~-------------------------------~---~~--l~~~d~iiipG~~~~~~~~~   54 (205)
T PRK13141         11 NLRSVEKALERLGAEAVITSD-------------------------------P---EE--ILAADGVILPGVGAFPDAMA   54 (205)
T ss_pred             hHHHHHHHHHHCCCeEEEECC-------------------------------H---HH--hccCCEEEECCCCchHHHHH
Confidence            467889999999988777531                               0   11  236999999996432 211 


Q ss_pred             -cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          294 -ALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       294 -~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                       .....+.++|+++.++++|+.+||.|.++|+.+
T Consensus        55 ~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         55 NLRERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             HHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence             123357899999999999999999999999996

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.74  E-value=0.00013  Score=64.27  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=65.9

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+++.|+-+..-+   +......|++.|+++.+++..                                  ++  ..++|
T Consensus         1 ~~~v~iid~~~GN---~~sl~~al~~~g~~v~vv~~~----------------------------------~~--l~~~d   41 (210)
T CHL00188          1 MMKIGIIDYSMGN---LHSVSRAIQQAGQQPCIINSE----------------------------------SE--LAQVH   41 (210)
T ss_pred             CcEEEEEEcCCcc---HHHHHHHHHHcCCcEEEEcCH----------------------------------HH--hhhCC
Confidence            3467777776444   677788888889888777421                                  01  13589


Q ss_pred             EEEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc---------CCCCCce
Q 016237          281 ALVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA---------GVLKGKK  333 (392)
Q Consensus       281 ~viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a---------glL~g~~  333 (392)
                      .||+||+..+..   ...+..+.+.|+++.++++|+.+||.|-++|++.         |+++|+-
T Consensus        42 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v  106 (210)
T CHL00188         42 ALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV  106 (210)
T ss_pred             EEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence            999999543221   1122356778899999999999999999999986         4666644

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.73  E-value=0.00018  Score=64.87  Aligned_cols=50  Identities=28%  Similarity=0.523  Sum_probs=40.2

Q ss_pred             CCccEEEEcCCCCc-cc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+||+|||.||... .. ..--..+.+||+++.++++||.+||.|.++|+.+
T Consensus        53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            47999999999642 11 1122567999999999999999999999999976

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.72  E-value=5.4e-05  Score=63.80  Aligned_cols=54  Identities=24%  Similarity=0.359  Sum_probs=47.2

Q ss_pred             CCCCcCEEEEcCCCCh---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCC
Q 016237          275 DVSGYDALVVPGGRAP---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGV  328 (392)
Q Consensus       275 ~~~~~D~viipgg~~~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~agl  328 (392)
                      .++++|+||||||...   ..+..+..+.+.|+++.++|.+|.|+|.|-++|.+.=.
T Consensus         4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            4568999999999863   33677889999999999999999999999999998854

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.65  E-value=0.00026  Score=77.93  Aligned_cols=99  Identities=14%  Similarity=0.242  Sum_probs=76.4

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..|++|+.++|.+  .-......|+.+||++..+..+.-                    ..+          .....+|+
T Consensus      1035 ~pkv~il~~pG~N--~~~e~~~Af~~aG~~~~~v~~~dl--------------------~~~----------~~~l~~~~ 1082 (1290)
T PRK05297       1035 RPKVAILREQGVN--SHVEMAAAFDRAGFDAIDVHMSDL--------------------LAG----------RVTLEDFK 1082 (1290)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCCeEEEEeecC--------------------cCC----------CCChhhCc
Confidence            4689999999998  777888889999999877755411                    001          01345899


Q ss_pred             EEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEehHHHHHHHcC-CCCC
Q 016237          281 ALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICHGQQILAAAG-VLKG  331 (392)
Q Consensus       281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~~La~ag-lL~g  331 (392)
                      ++++|||+.. +.          +..++.+.+.+++|+ ++++++.+||+|.++|.+.| |+.+
T Consensus      1083 ~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1083 GLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             EEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence            9999999742 11          245678999999977 77899999999999999998 7765

>PRK05665 amidotransferase; Provisional

Probab=97.65  E-value=0.00042  Score=62.47  Aligned_cols=50  Identities=18%  Similarity=0.371  Sum_probs=40.5

Q ss_pred             CCccEEEEcCCC-Cccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGR-APEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~-~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+||++||.||. ++.. ..--..+.+||++++++++++.+||.|.++||.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            379999999995 3321 1122578999999999999999999999999987

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.65  E-value=0.00043  Score=66.06  Aligned_cols=91  Identities=21%  Similarity=0.312  Sum_probs=73.0

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+|..-.-|+. =.-.-++.|++.|+++.++||-.+                                +++ |++.|+
T Consensus       246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D--------------------------------~~l-P~~~D~  291 (451)
T COG1797         246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLAD--------------------------------EEL-PPDVDA  291 (451)
T ss_pred             ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCC--------------------------------CCC-CCCCCE
Confidence            5898877555553 455667899999999999998542                                111 235899


Q ss_pred             EEEcCCCC---cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~---~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |+||||.-   +..|.++..+++.|++++..|++|.+-|.|-..|.+.
T Consensus       292 vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~  339 (451)
T COG1797         292 VYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES  339 (451)
T ss_pred             EEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence            99999973   3458889999999999999999999999999999875

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.63  E-value=0.00029  Score=62.23  Aligned_cols=88  Identities=20%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCe--EEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECH--VDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~--v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      ++|+.|+-+..-+   +......|++.|++  +.+.+                                  +.++  .++
T Consensus         1 ~~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~----------------------------------~~~~--l~~   41 (209)
T PRK13146          1 MMTVAIIDYGSGN---LRSAAKALERAGAGADVVVTA----------------------------------DPDA--VAA   41 (209)
T ss_pred             CCeEEEEECCCCh---HHHHHHHHHHcCCCccEEEEC----------------------------------CHHH--hcC
Confidence            3567766665444   56677888888873  22221                                  1122  247


Q ss_pred             cCEEEEcCCCChh----hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          279 YDALVVPGGRAPE----YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       279 ~D~viipgg~~~~----~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      +|.|||||+....    .+........+++..+++++|+.++|.|.++|++++
T Consensus        42 ~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~   94 (209)
T PRK13146         42 ADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG   94 (209)
T ss_pred             CCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence            9999999965422    123222233445555679999999999999999984

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.63  E-value=0.00024  Score=70.31  Aligned_cols=90  Identities=21%  Similarity=0.293  Sum_probs=69.4

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+|+-.+-|+..= ..=++.|++.|.++..+++-.+                                +++  +++|+
T Consensus       245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d--------------------------------~~l--~~~d~  289 (449)
T TIGR00379       245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED--------------------------------TEL--PDVDA  289 (449)
T ss_pred             cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC--------------------------------CCC--CCCCE
Confidence            489999887666521 3445677788999999887421                                112  26899


Q ss_pred             EEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |+||||...   ..+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus       290 l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       290 VYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             EEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            999999842   235567889999999999999999999999999976

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=97.62  E-value=0.00024  Score=62.33  Aligned_cols=75  Identities=24%  Similarity=0.322  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh---
Q 016237          216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY---  292 (392)
Q Consensus       216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~---  292 (392)
                      .+....+.|++.|++++++...                                  ++  ..+||.|||||+..+..   
T Consensus        10 ~~~~~~~~l~~~g~~v~v~~~~----------------------------------~~--l~~~d~iiipG~~~~~~~~~   53 (198)
T cd01748          10 NLRSVANALERLGAEVIITSDP----------------------------------EE--ILSADKLILPGVGAFGDAMA   53 (198)
T ss_pred             hHHHHHHHHHHCCCeEEEEcCh----------------------------------HH--hccCCEEEECCCCcHHHHHH
Confidence            5677788899999888877531                                  01  23689999999644322   


Q ss_pred             ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          293 LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       293 ~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ......+.++++++.++++||.++|.|.++|+.+
T Consensus        54 ~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~   87 (198)
T cd01748          54 NLRERGLIEALKEAIASGKPFLGICLGMQLLFES   87 (198)
T ss_pred             HHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence            1234467899999999999999999999999997

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.61  E-value=0.00043  Score=62.41  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=42.6

Q ss_pred             CCcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+||.|||.||...  +..+....+.+||+++.++++||.+||.|.++|+.+
T Consensus        53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            47999999998753  224445778999999999999999999999999988

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.59  E-value=6.5e-05  Score=63.29  Aligned_cols=52  Identities=27%  Similarity=0.474  Sum_probs=45.0

Q ss_pred             CCCCccEEEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           82 DPSKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        82 ~~~~~D~iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .++++|+|++|||...   ..+.++..+.+.|+++.++|++|.++|.|-++|.+.
T Consensus         4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~   58 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGES   58 (158)
T ss_pred             CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence            3568999999999752   236677889999999999999999999999999976

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK05665 amidotransferase; Provisional

Probab=97.59  E-value=0.00048  Score=62.06  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=42.8

Q ss_pred             CCcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++||.+||.||...  +..+.-..+.+||++++++++|+.+||.|.++||.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            47999999999642  224555888999999999999999999999999988

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.50  E-value=0.00041  Score=59.34  Aligned_cols=87  Identities=23%  Similarity=0.283  Sum_probs=62.9

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |++|+|+-+.--+   +......|+++|+++.+.+.                                  .+++  ..+|
T Consensus         1 m~~i~IIDyg~GN---L~Sv~~Aler~G~~~~vs~d----------------------------------~~~i--~~AD   41 (204)
T COG0118           1 MMMVAIIDYGSGN---LRSVKKALERLGAEVVVSRD----------------------------------PEEI--LKAD   41 (204)
T ss_pred             CCEEEEEEcCcch---HHHHHHHHHHcCCeeEEecC----------------------------------HHHH--hhCC
Confidence            4556666555444   77778888888877555432                                  2222  3689


Q ss_pred             EEEEcC-CCC--h-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          281 ALVVPG-GRA--P-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       281 ~viipg-g~~--~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      .||+|| |..  . ..+... .+.+.|++....++|+.+||.|-++|.+.+
T Consensus        42 ~liLPGVGaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGIClGMQlLfe~S   91 (204)
T COG0118          42 KLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFLGICLGMQLLFERS   91 (204)
T ss_pred             EEEecCCCCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence            999999 442  2 224444 899999999999999999999999999773

>PRK00784 cobyric acid synthase; Provisional

Probab=97.49  E-value=0.00031  Score=70.30  Aligned_cols=87  Identities=20%  Similarity=0.338  Sum_probs=65.1

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHh-CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .||+|+-+|...-.   .=++.|++ +|+++.++++..                                  ++  +++|
T Consensus       252 ~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~----------------------------------~l--~~~d  292 (488)
T PRK00784        252 LRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE----------------------------------PL--PDAD  292 (488)
T ss_pred             eEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc----------------------------------cc--ccCC
Confidence            48999887743322   44567776 888888887631                                  22  2689


Q ss_pred             EEEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           88 GLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        88 ~iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      +|++|||....   .+..+..+.+.|+++.++|+++.++|.|.++|++.-
T Consensus       293 ~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        293 LVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             EEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence            99999997422   234556689999999999999999999999999864

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=97.49  E-value=0.00039  Score=60.41  Aligned_cols=77  Identities=22%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccC
Q 016237          216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLAL  295 (392)
Q Consensus       216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~  295 (392)
                      -.......|++.|++++++..+.                               +.++++.-++|.||||||....+   
T Consensus        10 ~~~~l~~~l~~~g~~~~~~~~~~-------------------------------~~~~~~~~~~~glii~Gg~~~~~---   55 (188)
T TIGR00888        10 YTQLIARRLRELGVYSELVPNTT-------------------------------PLEEIREKNPKGIILSGGPSSVY---   55 (188)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCC-------------------------------CHHHHhhcCCCEEEECCCCCCcC---
Confidence            45567788888898888775531                               11111112467999999976422   


Q ss_pred             ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          296 NENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       296 ~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.....++++..++++|+.+||.|.++|+.+
T Consensus        56 ~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        56 AENAPRADEKIFELGVPVLGICYGMQLMAKQ   86 (188)
T ss_pred             cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence            2235688999999999999999999999987

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PHA03366 FGAM-synthase; Provisional

Probab=97.48  E-value=0.00064  Score=74.85  Aligned_cols=97  Identities=15%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..||+|+.++|.+  .-......|.++||++..+..+.-                              .-... .++|+
T Consensus      1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dL------------------------------~~~~~-l~~f~ 1074 (1304)
T PHA03366       1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEEL------------------------------KDGTF-LDEFS 1074 (1304)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeecC------------------------------CCCCc-cccce
Confidence            5799999999998  777788888899999887765411                              01111 45799


Q ss_pred             EEEEcCCCCh-hh----------ccCChHHHHHHHHHHH-cCCcEEEEeh-HHHHHHHcCCCC
Q 016237          281 ALVVPGGRAP-EY----------LALNENVIALVKDFME-AKKPVASICH-GQQILAAAGVLK  330 (392)
Q Consensus       281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~~-~g~~i~aiC~-G~~~La~aglL~  330 (392)
                      .|++|||++. +.          +..++.+.+.+++|++ ++..+.+||+ |-++|.+.|+|.
T Consensus      1075 glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1075 GLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             EEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence            9999999863 22          2468899999999995 5899999999 999999999994

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=97.45  E-value=0.00031  Score=60.92  Aligned_cols=87  Identities=22%  Similarity=0.300  Sum_probs=58.4

Q ss_pred             EEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEc
Q 016237           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIP   92 (392)
Q Consensus        13 ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiip   92 (392)
                      ||+-|.++... ....+.|++.|.++.++..+..                              +++++...+||+||+.
T Consensus         2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils   50 (187)
T PRK08007          2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL------------------------------TLADIDALKPQKIVIS   50 (187)
T ss_pred             EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCEEEEc
Confidence            45556666322 2377888889999988765421                              1222222368999999


Q ss_pred             CCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        93 GG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||.+...  +......++++ +.+++|+.+||-|.++|+.+
T Consensus        51 ~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         51 PGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             CCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            9986322  22334566665 56889999999999999976

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=97.44  E-value=0.00043  Score=60.03  Aligned_cols=87  Identities=16%  Similarity=0.248  Sum_probs=58.3

Q ss_pred             EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237          206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP  285 (392)
Q Consensus       206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip  285 (392)
                      +++.|++... .....+.|++.|.++.++..+..                              .++++...+||.||+.
T Consensus         2 il~idn~Dsf-t~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils   50 (187)
T PRK08007          2 ILLIDNYDSF-TWNLYQYFCELGADVLVKRNDAL------------------------------TLADIDALKPQKIVIS   50 (187)
T ss_pred             EEEEECCCcc-HHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCEEEEc
Confidence            4455555522 23377888888988888755311                              1222222368999999


Q ss_pred             CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||++...  .......++++ +..++||.+||-|.++|+.+
T Consensus        51 ~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         51 PGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             CCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            9997433  23345566665 56789999999999999988

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.44  E-value=0.0004  Score=60.71  Aligned_cols=75  Identities=24%  Similarity=0.217  Sum_probs=53.7

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc---
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY---   99 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~---   99 (392)
                      .+....+.|+..|.+++++..+                                  .+  .+++|+|++||+.....   
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~----------------------------------~~--l~~~d~lii~G~~~~~~~~~   53 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDS----------------------------------KE--AELADKLILPGVGAFGAAMA   53 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCH----------------------------------HH--hccCCEEEECCCCCHHHHHH
Confidence            6778888999999888887522                                  11  23699999999543211   


Q ss_pred             -ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237          100 -LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus       100 -~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                       +.... ...+++++++.+++|.++|.|.++|+++.
T Consensus        54 ~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~~   88 (196)
T TIGR01855        54 RLRENG-LDLFVELVVRLGKPVLGICLGMQLLFERS   88 (196)
T ss_pred             HHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhcc
Confidence             22222 34455888899999999999999999983

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.44  E-value=0.00045  Score=65.91  Aligned_cols=90  Identities=23%  Similarity=0.328  Sum_probs=72.0

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      ||++ +.|..-..-+-.-++.|++.|+++.++||-.+.                             .+    +++.|+|
T Consensus       247 rIAV-A~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~-----------------------------~l----P~~~D~v  292 (451)
T COG1797         247 RIAV-ARDAAFNFYYPENLELLREAGAELVFFSPLADE-----------------------------EL----PPDVDAV  292 (451)
T ss_pred             eEEE-EecchhccccHHHHHHHHHCCCEEEEeCCcCCC-----------------------------CC----CCCCCEE
Confidence            4444 455555556777899999999999999985321                             11    2358999


Q ss_pred             EEcCCCC---hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRA---PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~---~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +||||+-   ...|..++...+.|+++++.|++|-|=|.|-.+|.++
T Consensus       293 YlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~  339 (451)
T COG1797         293 YLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES  339 (451)
T ss_pred             EeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence            9999985   3558999999999999999999999999999999977

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.41  E-value=0.00035  Score=61.12  Aligned_cols=82  Identities=21%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      ||+|+=+-.-+   +......|++.|+++.++...                                  +++  .++|.|
T Consensus         2 ~i~iid~g~gn---~~s~~~~l~~~g~~~~~v~~~----------------------------------~~~--~~~d~i   42 (196)
T PRK13170          2 NVVIIDTGCAN---LSSVKFAIERLGYEPVVSRDP----------------------------------DVI--LAADKL   42 (196)
T ss_pred             eEEEEeCCCch---HHHHHHHHHHCCCeEEEECCH----------------------------------HHh--CCCCEE
Confidence            57776554333   445566888889888887422                                  122  257899


Q ss_pred             EEcCC-CCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           90 VIPGG-RAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        90 iipGG-~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |+||+ .....  ......+.+.+++   .++||.+||.|.++|+.+
T Consensus        43 IlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         43 FLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER   86 (196)
T ss_pred             EECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence            99994 32111  1111234455544   589999999999999987

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=97.41  E-value=0.00043  Score=60.13  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=55.7

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAM  102 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~  102 (392)
                      -+....+.|++.|++++++..+..                               .++++.-+||+||+|||.+...   
T Consensus        10 ~~~~l~~~l~~~g~~~~~~~~~~~-------------------------------~~~~~~~~~~glii~Gg~~~~~---   55 (188)
T TIGR00888        10 YTQLIARRLRELGVYSELVPNTTP-------------------------------LEEIREKNPKGIILSGGPSSVY---   55 (188)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCCC-------------------------------HHHHhhcCCCEEEECCCCCCcC---
Confidence            455677889999999988765421                               1211111367999999965322   


Q ss_pred             CHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          103 NDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       103 ~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +.....+++++.++++|+.+||.|.++|+.+
T Consensus        56 ~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        56 AENAPRADEKIFELGVPVLGICYGMQLMAKQ   86 (188)
T ss_pred             cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence            2235678899999999999999999999976

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=97.41  E-value=0.00049  Score=59.96  Aligned_cols=87  Identities=18%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237          206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP  285 (392)
Q Consensus       206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip  285 (392)
                      +++.|+.. +=....++.|++.|++++++..+..                              .++++...++|.||+.
T Consensus         2 il~id~~d-sf~~nl~~~l~~~~~~~~v~~~~~~------------------------------~~~~~~~~~~~~iils   50 (191)
T PRK06774          2 LLLIDNYD-SFTYNLYQYFCELGTEVMVKRNDEL------------------------------QLTDIEQLAPSHLVIS   50 (191)
T ss_pred             EEEEECCC-chHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCeEEEc
Confidence            34444444 1233478888889999988865421                              1222222368999999


Q ss_pred             CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||++...  .......+++. +++++||.+||.|.++|+.+
T Consensus        51 gGP~~~~--~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~   88 (191)
T PRK06774         51 PGPCTPN--EAGISLAVIRH-FADKLPILGVCLGHQALGQA   88 (191)
T ss_pred             CCCCChH--hCCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            9986322  22334566654 57789999999999999988

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.40  E-value=0.00091  Score=60.46  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=36.0

Q ss_pred             CCCccEEEEcCCCC-cccc--cCCH-------HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           83 PSKYDGLVIPGGRA-PEYL--AMND-------SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        83 ~~~~D~iiipGG~~-~~~~--~~~~-------~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ...||+|||.||.. +..-  ...+       .+.++++...++++||.+||.|.++|+.+
T Consensus        49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            34799999999963 2211  1122       23345555568999999999999999987

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.38  E-value=0.00073  Score=59.89  Aligned_cols=80  Identities=19%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .....+.|++.|+++.++..+...                        ..   ...+. ..+||.|||.||++...  ..
T Consensus        13 ~~~~~~~l~~~G~~~~~~~~~~~~------------------------~~---~~~~~-~~~~dgliisGGp~~~~--~~   62 (214)
T PRK07765         13 VFNLVQYLGQLGVEAEVWRNDDPR------------------------LA---DEAAV-AAQFDGVLLSPGPGTPE--RA   62 (214)
T ss_pred             HHHHHHHHHHcCCcEEEEECCCcC------------------------HH---HHHHh-hcCCCEEEECCCCCChh--hc
Confidence            345677888899999888664110                        00   11111 23699999999986322  23


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ....+|++++.++++||.+||.|.++|+.+
T Consensus        63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a   92 (214)
T PRK07765         63 GASIDMVRACAAAGTPLLGVCLGHQAIGVA   92 (214)
T ss_pred             chHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence            456689999999999999999999999988

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=97.37  E-value=0.00043  Score=60.30  Aligned_cols=85  Identities=21%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             EEecCCCCccchHH-HHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237           13 LLCGDYMEDYEAMV-PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI   91 (392)
Q Consensus        13 ill~~g~~~~e~~~-~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii   91 (392)
                      ||+-|.++  .++. ..+.|++.|.+++++..+..                              +++++....+|+||+
T Consensus         2 il~id~~d--sf~~nl~~~l~~~~~~~~v~~~~~~------------------------------~~~~~~~~~~~~iil   49 (191)
T PRK06774          2 LLLIDNYD--SFTYNLYQYFCELGTEVMVKRNDEL------------------------------QLTDIEQLAPSHLVI   49 (191)
T ss_pred             EEEEECCC--chHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCeEEE
Confidence            34445555  3333 77888899999998876521                              122222236899999


Q ss_pred             cCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           92 PGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        92 pGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .||.+ +..   ......++++ +++++||.+||.|.++|+.+
T Consensus        50 sgGP~~~~~---~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~   88 (191)
T PRK06774         50 SPGPCTPNE---AGISLAVIRH-FADKLPILGVCLGHQALGQA   88 (191)
T ss_pred             cCCCCChHh---CCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            99975 332   2234455554 57799999999999999987

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.37  E-value=0.00097  Score=65.98  Aligned_cols=90  Identities=19%  Similarity=0.267  Sum_probs=66.7

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .+|++.-.+-++. -+..=++.|++.|.++..+++..+                             .     +.+++|+
T Consensus       245 ~~Iava~d~afnF-y~~~~~~~L~~~g~~~~~~~~~~d-----------------------------~-----~l~~~d~  289 (449)
T TIGR00379       245 VRIAVAQDQAFNF-YYQDNLDALTHNAAELVPFSPLED-----------------------------T-----ELPDVDA  289 (449)
T ss_pred             cEEEEEechhhce-eHHHHHHHHHHCCCEEEEECCccC-----------------------------C-----CCCCCCE
Confidence            3566666554442 234556778888888888876311                             1     1226899


Q ss_pred             EEEcCCCCh---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAP---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |+||||...   ..+..+..+.+.|+++.++|.+|.|+|.|-++|++.
T Consensus       290 l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       290 VYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             EEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            999999852   235667889999999999999999999999999976

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.34  E-value=0.0016  Score=56.83  Aligned_cols=55  Identities=33%  Similarity=0.466  Sum_probs=44.7

Q ss_pred             cCCCCCCcCEEEEcCCCChhhccC--ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          272 ESVDVSGYDALVVPGGRAPEYLAL--NENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       272 ~~~~~~~~D~viipgg~~~~~~~~--~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +..+...+|++||.||+..-+...  .+...++|++....+++|.+||.|.++||.+
T Consensus        39 ~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          39 EELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA   95 (198)
T ss_pred             ccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence            333444569999999985434344  7899999999999999999999999999987

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.34  E-value=0.00014  Score=61.60  Aligned_cols=49  Identities=35%  Similarity=0.651  Sum_probs=38.8

Q ss_pred             CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCC-CeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~-~~i~aic~G~~~La~a  133 (392)
                      ..|+||||||.++.  .+.....+.+-|+++.++| +||.+.|.|..+||+.
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~   84 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE   84 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence            68999999998742  2566678999999999998 9999999999999974

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.33  E-value=0.00074  Score=59.85  Aligned_cols=79  Identities=19%  Similarity=0.366  Sum_probs=56.5

Q ss_pred             HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND  104 (392)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~  104 (392)
                      ....+.|++.|+++.++..+...                        + +  ...+. ..+||+|||.||.+..  .+..
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~~~~------------------------~-~--~~~~~-~~~~dgliisGGp~~~--~~~~   63 (214)
T PRK07765         14 FNLVQYLGQLGVEAEVWRNDDPR------------------------L-A--DEAAV-AAQFDGVLLSPGPGTP--ERAG   63 (214)
T ss_pred             HHHHHHHHHcCCcEEEEECCCcC------------------------H-H--HHHHh-hcCCCEEEECCCCCCh--hhcc
Confidence            34567888899999988765210                        0 0  01111 2369999999997522  2234


Q ss_pred             HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ...++++++.++++||.+||.|.++|+.+
T Consensus        64 ~~~~~i~~~~~~~~PiLGIC~G~Qlla~a   92 (214)
T PRK07765         64 ASIDMVRACAAAGTPLLGVCLGHQAIGVA   92 (214)
T ss_pred             hHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence            56789999999999999999999999976

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=97.33  E-value=0.00081  Score=58.39  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE  297 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~  297 (392)
                      ....+.|++.|+++.++..+..                              .++++...++|.||+.||++...  ...
T Consensus        13 ~~~~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iilsgGpg~p~--~~~   60 (188)
T TIGR00566        13 YNLVQYFCELGAEVVVKRNDSL------------------------------TLQEIEALLPLLIVISPGPCTPN--EAG   60 (188)
T ss_pred             HHHHHHHHHcCCceEEEECCCC------------------------------CHHHHHhcCCCEEEEcCCCCChh--hcc
Confidence            3467778888888887765411                              11222223589999999987422  223


Q ss_pred             HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          298 NVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ...++++++ .+++||.+||.|-++|+.+
T Consensus        61 ~~~~~i~~~-~~~~PvLGIC~G~Qll~~~   88 (188)
T TIGR00566        61 ISLEAIRHF-AGKLPILGVCLGHQAMGQA   88 (188)
T ss_pred             hhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence            347888887 6789999999999999988

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.31  E-value=0.0013  Score=65.95  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=62.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .++|+|+=|-.-   .+......|++.|+++.++...                                  .+  ..++|
T Consensus         6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~~----------------------------------~~--l~~~D   46 (538)
T PLN02617          6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQTP----------------------------------ED--ILNAD   46 (538)
T ss_pred             CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECCh----------------------------------hh--hccCC
Confidence            568887755433   4556678888899988766421                                  12  23799


Q ss_pred             EEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+||+.....   ...+..+.+.|+++.++++|+.+||.|.++|+++
T Consensus        47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            999999754321   1223347788999999999999999999999974

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.30  E-value=0.00092  Score=57.62  Aligned_cols=76  Identities=20%  Similarity=0.311  Sum_probs=51.3

Q ss_pred             hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 016237           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN  103 (392)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~  103 (392)
                      .....+.|++.|.++.++..+..                               .++.+..+||+||+|||.+.......
T Consensus        11 ~~~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~~   59 (181)
T cd01742          11 THLIARRVRELGVYSEILPNTTP-------------------------------LEEIKLKNPKGIILSGGPSSVYEEDA   59 (181)
T ss_pred             HHHHHHHHHhcCceEEEecCCCC-------------------------------hhhhcccCCCEEEECCCccccccccc
Confidence            45578889999998888765421                               11122347999999999642211112


Q ss_pred             HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +.+   .++..+.++|+.+||.|.++|+.+
T Consensus        60 ~~~---~~~~~~~~~PilGIC~G~Qll~~~   86 (181)
T cd01742          60 PRV---DPEIFELGVPVLGICYGMQLIAKA   86 (181)
T ss_pred             chh---hHHHHhcCCCEEEEcHHHHHHHHh
Confidence            233   344455699999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.29  E-value=0.00064  Score=59.61  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=38.2

Q ss_pred             CccEEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ++|.||+||+.....   ......+.++|+++.++++|+.+||.|.++|+.+
T Consensus        37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            689999999643211   1122346788999999999999999999999987

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=97.27  E-value=0.0014  Score=71.95  Aligned_cols=98  Identities=12%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..||+|+.++|.+  .-......|..+||++..+..+.-.                    .+.           ..++|+
T Consensus       929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl~--------------------~~~-----------~l~~f~  975 (1202)
T TIGR01739       929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITELK--------------------KTD-----------FLDTFS  975 (1202)
T ss_pred             CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEeccCC--------------------CCC-----------chhheE
Confidence            4579999999998  7778888899999998888654210                    010           123789


Q ss_pred             EEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEeh-HHHHHHHcCCCCC
Q 016237          281 ALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICH-GQQILAAAGVLKG  331 (392)
Q Consensus       281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~-G~~~La~aglL~g  331 (392)
                      .|+++||++. +.          +..++.+.+.+++|+ +++.++.+||+ |-++|.+.|+|..
T Consensus       976 glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       976 GLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred             EEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence            9999998752 11          245789999999999 45999999999 9999999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.27  E-value=0.0017  Score=58.74  Aligned_cols=51  Identities=18%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             CCCcCEEEEcCCCChhh------ccCChHHH----HHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEY------LALNENVI----ALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~------~~~~~~l~----~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .++||.|||.||....+      .+.-..+.    ++++...++++||.+||.|.++|+.+
T Consensus        49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            45799999999975321      11112233    44555558999999999999999988

>PRK05637 anthranilate synthase component II; Provisional

Probab=97.27  E-value=0.0014  Score=57.86  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .....+.|++.|++++++..+-                               .++++....||.||+.||++...  ..
T Consensus        14 ~~nl~~~l~~~g~~~~v~~~~~-------------------------------~~~~l~~~~~~~iIlsgGPg~~~--d~   60 (208)
T PRK05637         14 VYNLVDAFAVAGYKCTVFRNTV-------------------------------PVEEILAANPDLICLSPGPGHPR--DA   60 (208)
T ss_pred             HHHHHHHHHHCCCcEEEEeCCC-------------------------------CHHHHHhcCCCEEEEeCCCCCHH--Hh
Confidence            3457888999999988886531                               11222223689999999887432  12


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ....++++++. .++||.+||.|.++|+.+
T Consensus        61 ~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         61 GNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             hHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence            23346665543 579999999999999988

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.26  E-value=0.0014  Score=56.54  Aligned_cols=76  Identities=20%  Similarity=0.338  Sum_probs=51.0

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .....+.|++.|+++.++..+..                               .++.+..+||.||+|||.........
T Consensus        11 ~~~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~~   59 (181)
T cd01742          11 THLIARRVRELGVYSEILPNTTP-------------------------------LEEIKLKNPKGIILSGGPSSVYEEDA   59 (181)
T ss_pred             HHHHHHHHHhcCceEEEecCCCC-------------------------------hhhhcccCCCEEEECCCccccccccc
Confidence            44567888888988887765311                               11223457999999998763221112


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+   .++..+.++|+.+||.|.++|+.+
T Consensus        60 ~~~---~~~~~~~~~PilGIC~G~Qll~~~   86 (181)
T cd01742          60 PRV---DPEIFELGVPVLGICYGMQLIAKA   86 (181)
T ss_pred             chh---hHHHHhcCCCEEEEcHHHHHHHHh
Confidence            223   344455699999999999999986

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=97.26  E-value=0.00085  Score=59.44  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=65.1

Q ss_pred             CCccEEEEeCCCCCcch-hHHHHHHHHhc-CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccccc-ccCCCC
Q 016237          200 SDKRILFLCGDYMEDYE-VAVPFQSLQAL-ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTAN-FESVDV  276 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e-~~~~~~~~~~~-~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~-~~~~~~  276 (392)
                      ..++++++-.-.....+ .......|++. |++++.+....                             +.. .+.  .
T Consensus        30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-----------------------------~~~~~~~--l   78 (212)
T cd03146          30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-----------------------------TEDPLDA--L   78 (212)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-----------------------------cccHHHH--H
Confidence            45567777655443223 45577788888 88877665420                             111 222  2


Q ss_pred             CCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+|+|++|||.-...  ..+...+.+.|++.+++|++++++|.|++++.+.
T Consensus        79 ~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            4789999999853211  2233478888999999999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.24  E-value=0.00054  Score=59.68  Aligned_cols=80  Identities=30%  Similarity=0.473  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccC
Q 016237          216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLAL  295 (392)
Q Consensus       216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~  295 (392)
                      -.......|++.|.+++++..+..                            .....+ ...+||.++|+||.+...  .
T Consensus         9 ~~~~l~~~l~~~~~~~~v~~~~~~----------------------------~~~~~~-~~~~~d~iii~Gg~~~~~--d   57 (192)
T PF00117_consen    9 FTHSLVRALRELGIDVEVVRVDSD----------------------------FEEPLE-DLDDYDGIIISGGPGSPY--D   57 (192)
T ss_dssp             THHHHHHHHHHTTEEEEEEETTGG----------------------------HHHHHH-HTTTSSEEEEECESSSTT--S
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCc----------------------------hhhhhh-hhcCCCEEEECCcCCccc--c
Confidence            355677888999988888876411                            000111 245899999999987422  1


Q ss_pred             ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          296 NENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       296 ~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+...++++++.++++|+.+||.|.++|+.+
T Consensus        58 ~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   58 IEGLIELIREARERKIPILGICLGHQILAHA   88 (192)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred             ccccccccccccccceEEEEEeehhhhhHHh
Confidence            5788899999999999999999999999988

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK05637 anthranilate synthase component II; Provisional

Probab=97.21  E-value=0.0011  Score=58.46  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=58.0

Q ss_pred             CEEEEEec-CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         9 ~kI~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +||+++=+ |+|    .....+.|++.|+.++++..+.                               +++++...+||
T Consensus         2 ~~il~iD~~dsf----~~nl~~~l~~~g~~~~v~~~~~-------------------------------~~~~l~~~~~~   46 (208)
T PRK05637          2 THVVLIDNHDSF----VYNLVDAFAVAGYKCTVFRNTV-------------------------------PVEEILAANPD   46 (208)
T ss_pred             CEEEEEECCcCH----HHHHHHHHHHCCCcEEEEeCCC-------------------------------CHHHHHhcCCC
Confidence            47665543 333    2457788999999998887542                               12222223689


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .|||.||.+...  +.....+++++.. .++||.+||.|.++|+.+
T Consensus        47 ~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         47 LICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             EEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence            999988875321  2233456665543 579999999999999987

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=97.19  E-value=0.00048  Score=56.46  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=61.8

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +-|+++...|.-..........+.+..|.+.+-                              +.+-.+-.|  ..+.|+
T Consensus        12 ~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~------------------------------~~tVKT~~D--~aq~Da   59 (226)
T KOG3210|consen   12 VVIGVLALQGAFIEHVNHVEKCIVENRYEIKLS------------------------------VMTVKTKND--LAQCDA   59 (226)
T ss_pred             eEEeeeehhhHHHHHHHHHHHhhccCcceEEEE------------------------------EEeecCHHH--HhhCCE
Confidence            458888888876555555444444444443321                              111112333  347999


Q ss_pred             EEEcCCCCcc-c-ccCCHHHHHHHHHHHhCC-CeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPE-Y-LAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~-~-~~~~~~l~~~l~~~~~~~-~~i~aic~G~~~La~a  133 (392)
                      +|||||.+.. . +.+-..+.+-|.++..++ +++.+.|.|..+|.+.
T Consensus        60 LIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q  107 (226)
T KOG3210|consen   60 LIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ  107 (226)
T ss_pred             EEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence            9999998743 2 445556889999998887 9999999999888753

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.17  E-value=0.003  Score=55.04  Aligned_cols=54  Identities=31%  Similarity=0.495  Sum_probs=42.1

Q ss_pred             CCCCCCccEEEEcCCCCcccccC--CHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           80 EIDPSKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        80 ~~~~~~~D~iiipGG~~~~~~~~--~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +++..++|+|||.||...-....  .+...++|++....+++|.+||.|.++||.+
T Consensus        40 ~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          40 ELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA   95 (198)
T ss_pred             cccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence            33334569999999973212223  6789999999999999999999999999965

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=97.16  E-value=0.0012  Score=57.22  Aligned_cols=85  Identities=20%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             EecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEc
Q 016237           14 LCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIP   92 (392)
Q Consensus        14 ll~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiip   92 (392)
                      ++-|.++  .++ ...+.|++.|+++.++..+..                              .++++....+|.|||.
T Consensus         3 l~id~~d--sft~~~~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils   50 (188)
T TIGR00566         3 LMIDNYD--SFTYNLVQYFCELGAEVVVKRNDSL------------------------------TLQEIEALLPLLIVIS   50 (188)
T ss_pred             EEEECCc--CHHHHHHHHHHHcCCceEEEECCCC------------------------------CHHHHHhcCCCEEEEc
Confidence            4444444  333 366777788998887765421                              1222222258999999


Q ss_pred             CCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        93 GG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||.+...  +.....++++++ .+++||.+||.|.++|+.+
T Consensus        51 gGpg~p~--~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~   88 (188)
T TIGR00566        51 PGPCTPN--EAGISLEAIRHF-AGKLPILGVCLGHQAMGQA   88 (188)
T ss_pred             CCCCChh--hcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence            9985321  223346777777 6789999999999999976

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.15  E-value=0.0017  Score=56.86  Aligned_cols=74  Identities=24%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChh-h--
Q 016237          216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPE-Y--  292 (392)
Q Consensus       216 e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~-~--  292 (392)
                      .+....+.|+..|.+++++..+                                  +  +.+++|.||+||+..+. .  
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~----------------------------------~--~l~~~d~lii~G~~~~~~~~~   53 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDS----------------------------------K--EAELADKLILPGVGAFGAAMA   53 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCH----------------------------------H--HhccCCEEEECCCCCHHHHHH
Confidence            5777888888888777666421                                  0  12368999999954321 1  


Q ss_pred             -ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          293 -LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       293 -~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                       +.... ...+++++.+.++||.++|.|.++|+.+
T Consensus        54 ~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~   87 (196)
T TIGR01855        54 RLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER   87 (196)
T ss_pred             HHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence             22222 3444488889999999999999999998

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.12  E-value=0.002  Score=56.36  Aligned_cols=82  Identities=18%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      +++++-+..-+   +......|++.|++++++...                                  +++  .++|.|
T Consensus         2 ~i~iid~g~gn---~~s~~~~l~~~g~~~~~v~~~----------------------------------~~~--~~~d~i   42 (196)
T PRK13170          2 NVVIIDTGCAN---LSSVKFAIERLGYEPVVSRDP----------------------------------DVI--LAADKL   42 (196)
T ss_pred             eEEEEeCCCch---HHHHHHHHHHCCCeEEEECCH----------------------------------HHh--CCCCEE
Confidence            44544443333   555666888888887777321                                  111  257899


Q ss_pred             EEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |+||...+..   ......+.+.+++   .++||.+||.|.++|+.+
T Consensus        43 IlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         43 FLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER   86 (196)
T ss_pred             EECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence            9999433211   1112235555554   489999999999999988

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.10  E-value=0.0021  Score=62.80  Aligned_cols=87  Identities=20%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      +|+|. .|..--.-+..-++.|+++ .++..+||-..                             .     ..+++|+|
T Consensus       235 ~iavA-~D~AF~FyY~enl~~L~~~-aelv~fSPl~~-----------------------------~-----~lp~~D~l  278 (433)
T PRK13896        235 TVAVA-RDAAFCFRYPATIERLRER-ADVVTFSPVAG-----------------------------D-----PLPDCDGV  278 (433)
T ss_pred             eEEEE-EcCccceeCHHHHHHHHhc-CcEEEEcCCCC-----------------------------C-----CCCCCCEE
Confidence            44443 3444444566677888888 89888888421                             1     12268999


Q ss_pred             EEcCCCCh---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRAP---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|||...   ..+..+... +.|+++.++|++|.|+|.|-++|++.
T Consensus       279 ~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        279 YLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             EeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            99999842   225555555 89999999999999999999999986

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.09  E-value=0.0015  Score=56.59  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+|+=|..-+   +.....+|++.|.++.++...                                  +++  .++|.||
T Consensus         2 i~iidyg~gN---~~s~~~al~~~g~~~~~v~~~----------------------------------~~l--~~~D~lI   42 (192)
T PRK13142          2 IVIVDYGLGN---ISNVKRAIEHLGYEVVVSNTS----------------------------------KII--DQAETII   42 (192)
T ss_pred             EEEEEcCCcc---HHHHHHHHHHcCCCEEEEeCH----------------------------------HHh--ccCCEEE
Confidence            6777665554   566667777888888776422                                  222  2589999


Q ss_pred             EcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           91 IPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        91 ipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      +||+-...   ...+...+.+.|++  ..++++.+||.|.++|++..
T Consensus        43 lPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~   87 (192)
T PRK13142         43 LPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS   87 (192)
T ss_pred             ECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence            99984422   11223346777877  56899999999999999875

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=97.07  E-value=0.0015  Score=57.00  Aligned_cols=87  Identities=16%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237          206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP  285 (392)
Q Consensus       206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip  285 (392)
                      +++.|+... =.....+.|++.|+++.++..+..                              .++++...+||.||+.
T Consensus         2 il~idn~ds-ft~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iIls   50 (195)
T PRK07649          2 ILMIDNYDS-FTFNLVQFLGELGQELVVKRNDEV------------------------------TISDIENMKPDFLMIS   50 (195)
T ss_pred             EEEEeCCCc-cHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHhhCCCCEEEEC
Confidence            344444441 233488889999999888864311                              1112222368999999


Q ss_pred             CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||++...  ........+++ +..++|+.+||-|.++|+.+
T Consensus        51 gGP~~p~--~~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~   88 (195)
T PRK07649         51 PGPCSPN--EAGISMEVIRY-FAGKIPIFGVCLGHQSIAQV   88 (195)
T ss_pred             CCCCChH--hCCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            9987422  12234555554 35789999999999999988

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.06  E-value=0.0014  Score=56.96  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=38.2

Q ss_pred             CCccEEEEcCCCCccc---------------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~---------------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..+|.||+|||.+...               ...+....++++++.++++||.+||.|.++|+.+
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            3699999999964211               1112244788999999999999999999999875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>CHL00101 trpG anthranilate synthase component 2

Probab=97.05  E-value=0.0014  Score=56.92  Aligned_cols=76  Identities=14%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE  297 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~  297 (392)
                      ....+.|++.|.++.++..+..                              .+++....++|.|||.||.+...   +.
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dgiiisgGpg~~~---~~   59 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEI------------------------------DLSKIKNLNIRHIIISPGPGHPR---DS   59 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCC------------------------------CHHHHhhCCCCEEEECCCCCChH---HC
Confidence            4477888888888877754311                              11122223689999999987422   12


Q ss_pred             HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          298 NVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+...+.+.+++++|+.+||-|.++|+.+
T Consensus        60 ~~~~~i~~~~~~~~PiLGIClG~Qlla~~   88 (190)
T CHL00101         60 GISLDVISSYAPYIPILGVCLGHQSIGYL   88 (190)
T ss_pred             cchHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence            23344445677899999999999999987

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.05  E-value=0.00087  Score=58.35  Aligned_cols=79  Identities=29%  Similarity=0.516  Sum_probs=58.9

Q ss_pred             hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 016237           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN  103 (392)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~  103 (392)
                      .......|++.|.+++++......                           ....+  +..+||+|+|+||.+...  +.
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~~---------------------------~~~~~--~~~~~d~iii~Gg~~~~~--d~   58 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSDF---------------------------EEPLE--DLDDYDGIIISGGPGSPY--DI   58 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGGH---------------------------HHHHH--HTTTSSEEEEECESSSTT--SH
T ss_pred             HHHHHHHHHHCCCeEEEEECCCch---------------------------hhhhh--hhcCCCEEEECCcCCccc--cc
Confidence            345678888999999988765210                           00011  234899999999975322  25


Q ss_pred             HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ....++++++.++++|+.+||.|.++|+.+
T Consensus        59 ~~~~~~i~~~~~~~~PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   59 EGLIELIREARERKIPILGICLGHQILAHA   88 (192)
T ss_dssp             HHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred             cccccccccccccceEEEEEeehhhhhHHh
Confidence            788899999999999999999999999976

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.04  E-value=0.0031  Score=61.69  Aligned_cols=88  Identities=20%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+|.--.-|+. =+-.-++.|+++ .++..+||-.+                                +++  +++|+
T Consensus       234 ~~iavA~D~AF~F-yY~enl~~L~~~-aelv~fSPl~~--------------------------------~~l--p~~D~  277 (433)
T PRK13896        234 PTVAVARDAAFCF-RYPATIERLRER-ADVVTFSPVAG--------------------------------DPL--PDCDG  277 (433)
T ss_pred             CeEEEEEcCccce-eCHHHHHHHHhc-CcEEEEcCCCC--------------------------------CCC--CCCCE
Confidence            4788776554543 344456778888 89999988421                                112  26899


Q ss_pred             EEEcCCCCc---ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~---~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||...   ..+..+..+ +-|+++.++|++|.++|.|-++|++.
T Consensus       278 l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        278 VYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             EEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            999999742   235555555 88999999999999999999999975

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=97.04  E-value=0.0029  Score=54.71  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .....+.|++.|+++.++..+...                            ....  +..+||.||+.||.+...   +
T Consensus        11 ~~~~~~~l~~~G~~~~~~~~~~~~----------------------------~~~~--~~~~~dgvil~gG~~~~~---~   57 (184)
T cd01743          11 TYNLVQYLRELGAEVVVVRNDEIT----------------------------LEEL--ELLNPDAIVISPGPGHPE---D   57 (184)
T ss_pred             HHHHHHHHHHcCCceEEEeCCCCC----------------------------HHHH--hhcCCCEEEECCCCCCcc---c
Confidence            445678888999999888775221                            0011  224699999988776421   2


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ......+++...+++|+.+||.|.++|+.+
T Consensus        58 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~   87 (184)
T cd01743          58 AGISLEIIRALAGKVPILGVCLGHQAIAEA   87 (184)
T ss_pred             chhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence            224556666677889999999999999988

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.04  E-value=0.0043  Score=62.30  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=60.7

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .+++.++=+-.-   .+......|++.|+++.++..                                  .++  ..++|
T Consensus         6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~----------------------------------~~~--l~~~D   46 (538)
T PLN02617          6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQT----------------------------------PED--ILNAD   46 (538)
T ss_pred             CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECC----------------------------------hhh--hccCC
Confidence            455665554433   466678888888888755532                                  011  24789


Q ss_pred             EEEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+||+..+..   ......+.+.|+++.+.++|+.+||.|.++|+.+
T Consensus        47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            999999655322   1223357888999999999999999999999975

>PRK05670 anthranilate synthase component II; Provisional

Probab=97.04  E-value=0.002  Score=55.98  Aligned_cols=79  Identities=22%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             chhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhcc
Q 016237          215 YEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLA  294 (392)
Q Consensus       215 ~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~  294 (392)
                      +-.....+.|++.|++++++..+...                           ...++.   .++|.||+.||.+...  
T Consensus        10 ~f~~~i~~~l~~~g~~~~v~~~~~~~---------------------------~~~~~~---~~~dglIlsgGpg~~~--   57 (189)
T PRK05670         10 SFTYNLVQYLGELGAEVVVYRNDEIT---------------------------LEEIEA---LNPDAIVLSPGPGTPA--   57 (189)
T ss_pred             chHHHHHHHHHHCCCcEEEEECCCCC---------------------------HHHHHh---CCCCEEEEcCCCCChH--
Confidence            34556788889999999888764210                           001222   2489999999886322  


Q ss_pred             CChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          295 LNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       295 ~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ......++++++ .+++|+.+||.|.++|+.+
T Consensus        58 d~~~~~~~l~~~-~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         58 EAGISLELIREF-AGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             HcchHHHHHHHh-cCCCCEEEECHHHHHHHHH
Confidence            123456677764 5779999999999999988

>PRK13566 anthranilate synthase; Provisional

Probab=97.03  E-value=0.0028  Score=65.96  Aligned_cols=90  Identities=16%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      .++||+|+=+..   .-.....+.|++.|++|.++......                            ..++   ..+|
T Consensus       525 ~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~----------------------------~~~~---~~~~  570 (720)
T PRK13566        525 EGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAE----------------------------EMLD---RVNP  570 (720)
T ss_pred             CCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCCh----------------------------hHhh---hcCC
Confidence            357888777652   34667888999999999998765310                            0111   2368


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |.|||.||.+..   .+..+..+++++.++++||.+||.|.++|+.+
T Consensus       571 DgVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        571 DLVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             CEEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence            999998876532   22347899999999999999999999999987

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=97.01  E-value=0.0017  Score=57.54  Aligned_cols=96  Identities=14%  Similarity=0.098  Sum_probs=64.2

Q ss_pred             CCEEEEEecCCCCccc-hHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            8 KRSVLLLCGDYMEDYE-AMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e-~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      .+||+++-.-.....| .......|.+. |+++..+.....                            ....+.  ..+
T Consensus        31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~----------------------------~~~~~~--l~~   80 (212)
T cd03146          31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDT----------------------------EDPLDA--LLE   80 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCc----------------------------ccHHHH--Hhc
Confidence            4678888765443333 45566777778 877766543210                            001222  237


Q ss_pred             ccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           86 YDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        86 ~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|+|++|||.-..  ...+...+.+.|++.++++++++++|.|+.++.+.
T Consensus        81 ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          81 ADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             CCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            9999999985321  12233468889999999999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=97.00  E-value=0.0026  Score=55.44  Aligned_cols=87  Identities=18%  Similarity=0.283  Sum_probs=56.8

Q ss_pred             EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237          206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP  285 (392)
Q Consensus       206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip  285 (392)
                      |++.|+.... .....+.|++.|++++++..+...                        ..   .+.+   .++|.+++.
T Consensus         2 il~id~~dsf-t~~~~~~l~~~g~~~~~~~~~~~~------------------------~~---~~~~---~~~~~iils   50 (193)
T PRK08857          2 LLMIDNYDSF-TYNLYQYFCELGAQVKVVRNDEID------------------------ID---GIEA---LNPTHLVIS   50 (193)
T ss_pred             EEEEECCCCc-HHHHHHHHHHCCCcEEEEECCCCC------------------------HH---HHhh---CCCCEEEEe
Confidence            4444544422 233788899999999888664110                        00   1222   247899999


Q ss_pred             CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||++...  .+.....++++ .++++|+.+||.|.++|+.+
T Consensus        51 gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         51 PGPCTPN--EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             CCCCChH--HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            9875322  23334567765 57899999999999999988

>PRK05670 anthranilate synthase component II; Provisional

Probab=97.00  E-value=0.0022  Score=55.69  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCC-ccccc
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLA  101 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~-~~~~~  101 (392)
                      =.....+.|++.|+++.++..+...                           ...+++   .++|+||+.||.+ +..  
T Consensus        11 f~~~i~~~l~~~g~~~~v~~~~~~~---------------------------~~~~~~---~~~dglIlsgGpg~~~d--   58 (189)
T PRK05670         11 FTYNLVQYLGELGAEVVVYRNDEIT---------------------------LEEIEA---LNPDAIVLSPGPGTPAE--   58 (189)
T ss_pred             hHHHHHHHHHHCCCcEEEEECCCCC---------------------------HHHHHh---CCCCEEEEcCCCCChHH--
Confidence            4456678888899999998765210                           001122   2489999998875 322  


Q ss_pred             CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       102 ~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                       ......++++ ..+++|+.+||-|.++|+.+
T Consensus        59 -~~~~~~~l~~-~~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         59 -AGISLELIRE-FAGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             -cchHHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence             2345667776 46789999999999999977

>CHL00101 trpG anthranilate synthase component 2

Probab=97.00  E-value=0.0018  Score=56.35  Aligned_cols=76  Identities=13%  Similarity=0.065  Sum_probs=51.6

Q ss_pred             HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND  104 (392)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~  104 (392)
                      ....+.|++.|.++.++..+..                              .+.++...++|+|||.||.+...  +. 
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dgiiisgGpg~~~--~~-   59 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEI------------------------------DLSKIKNLNIRHIIISPGPGHPR--DS-   59 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCC------------------------------CHHHHhhCCCCEEEECCCCCChH--HC-
Confidence            4477888899988887765421                              12222223689999999976321  11 


Q ss_pred             HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+...+.+.+++++|+.+||-|.++|+.+
T Consensus        60 ~~~~~i~~~~~~~~PiLGIClG~Qlla~~   88 (190)
T CHL00101         60 GISLDVISSYAPYIPILGVCLGHQSIGYL   88 (190)
T ss_pred             cchHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence            23334445677899999999999999985

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.99  E-value=0.0021  Score=61.26  Aligned_cols=75  Identities=24%  Similarity=0.401  Sum_probs=56.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN  298 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~  298 (392)
                      ...+.|.+.|+++.++..+.                               .++++...++|.|+++||++...  ..+.
T Consensus       190 nivr~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~DGIvLSgGPgdp~--~~~~  236 (360)
T PRK12564        190 NILRELAERGCRVTVVPATT-------------------------------TAEEILALNPDGVFLSNGPGDPA--ALDY  236 (360)
T ss_pred             HHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHHhcCCCEEEEeCCCCChH--HHHH
Confidence            47788888899988886541                               11222122689999999986322  2367


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          299 VIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       299 l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++++++.++++||.+||.|.++|+.+
T Consensus       237 ~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        237 AIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             HHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            7899999998899999999999999987

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=96.96  E-value=0.0022  Score=56.01  Aligned_cols=85  Identities=21%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             EEecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237           13 LLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI   91 (392)
Q Consensus        13 ill~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii   91 (392)
                      ||+-|.++  .++ ...+.|++.|+++.++..+..                              .+++++..+||+||+
T Consensus         2 il~idn~d--sft~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iIl   49 (195)
T PRK07649          2 ILMIDNYD--SFTFNLVQFLGELGQELVVKRNDEV------------------------------TISDIENMKPDFLMI   49 (195)
T ss_pred             EEEEeCCC--ccHHHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHhhCCCCEEEE
Confidence            34445555  333 377889999999988875421                              112222236899999


Q ss_pred             cCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           92 PGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        92 pGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .||.+ +..   .......+++ +.+++|+.+||-|.++|+.+
T Consensus        50 sgGP~~p~~---~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~   88 (195)
T PRK07649         50 SPGPCSPNE---AGISMEVIRY-FAGKIPIFGVCLGHQSIAQV   88 (195)
T ss_pred             CCCCCChHh---CCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            99975 332   2224455554 45789999999999999975

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.96  E-value=0.00082  Score=58.95  Aligned_cols=49  Identities=31%  Similarity=0.504  Sum_probs=38.7

Q ss_pred             CcCEEEEcCCCChhh-c--cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPEY-L--ALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||+||+..+.. .  .....+.++|+++.++++|+.++|.|.++|+.+
T Consensus        37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            689999999654321 1  122357789999999999999999999999997

>PRK00784 cobyric acid synthase; Provisional

Probab=96.95  E-value=0.003  Score=63.26  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=41.3

Q ss_pred             CcCEEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||+|||....   .+..+..+.+.|+++.++|++|.++|.|-++|++.
T Consensus       290 ~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~  341 (488)
T PRK00784        290 DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR  341 (488)
T ss_pred             cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence            68999999998532   23456668999999999999999999999999985

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.95  E-value=0.0018  Score=61.70  Aligned_cols=87  Identities=24%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+++=+ |+.    ......|.+.|.++.++..+.                               +++++...++|+
T Consensus       178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~DG  221 (360)
T PRK12564        178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT-------------------------------TAEEILALNPDG  221 (360)
T ss_pred             CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHHhcCCCE
Confidence            46666544 332    357778888899888876542                               122222226999


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |+++||.+-.  .+.....++++++.++++||.+||.|.++|+.+
T Consensus       222 IvLSgGPgdp--~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        222 VFLSNGPGDP--AALDYAIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             EEEeCCCCCh--HHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            9999997522  123677899999998899999999999999865

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.95  E-value=0.0022  Score=56.36  Aligned_cols=76  Identities=18%  Similarity=0.169  Sum_probs=51.3

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc---
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY---   99 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~---   99 (392)
                      -+....+.|++.|+++.++...                                  +++  ..+|.||+||+..+..   
T Consensus        11 n~~~v~~~l~~~g~~~~~~~~~----------------------------------~~l--~~~d~lilPG~g~~~~~~~   54 (201)
T PRK13152         11 NLNSVAKAFEKIGAINFIAKNP----------------------------------KDL--QKADKLLLPGVGSFKEAMK   54 (201)
T ss_pred             cHHHHHHHHHHCCCeEEEECCH----------------------------------HHH--cCCCEEEECCCCchHHHHH
Confidence            4566778888888887775422                                  112  2589999999865322   


Q ss_pred             ccCCHHHHHHHHHH-HhCCCeEEEEchhhHHhhcCc
Q 016237          100 LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus       100 ~~~~~~l~~~l~~~-~~~~~~i~aic~G~~~La~ag  134 (392)
                      ......+...|++. +++++|+.+||.|.++|+.++
T Consensus        55 ~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~   90 (201)
T PRK13152         55 NLKELGFIEALKEQVLVQKKPILGICLGMQLFLERG   90 (201)
T ss_pred             HHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcc
Confidence            11111234555554 588999999999999999873

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=96.95  E-value=0.0022  Score=57.31  Aligned_cols=96  Identities=10%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CCEEEEEecCCC--Cccc-hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237            8 KRSVLLLCGDYM--EDYE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS   84 (392)
Q Consensus         8 ~~kI~ill~~g~--~~~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   84 (392)
                      .+||+++-+-..  +..+ +....+.|++.|+++..+.....                              ..+.  ..
T Consensus        31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d------------------------------~~~~--l~   78 (233)
T PRK05282         31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD------------------------------PVAA--IE   78 (233)
T ss_pred             CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh------------------------------hHHH--Hh
Confidence            467888776331  1122 34466777788887665532210                              0111  23


Q ss_pred             CccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcc
Q 016237           85 KYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV  135 (392)
Q Consensus        85 ~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agl  135 (392)
                      +.|+|+|+||.....  ......+.+.|++++++|+++++.|.|+.+++....
T Consensus        79 ~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282         79 NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence            789999999975322  344556888999999999999999999999887543

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=96.93  E-value=0.00079  Score=56.55  Aligned_cols=50  Identities=28%  Similarity=0.575  Sum_probs=43.6

Q ss_pred             CCcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++.|.+|||||-..  ..+.....+.+-|+++..+|+|+.+.|+|..+||+-
T Consensus        37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake   88 (194)
T COG0311          37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE   88 (194)
T ss_pred             ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence            36899999999863  337778889999999999999999999999999963

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=96.92  E-value=0.0039  Score=64.76  Aligned_cols=89  Identities=21%  Similarity=0.220  Sum_probs=64.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+=+.   ........+.|++.|+++.++.....                            ...++   ..+||
T Consensus       516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~----------------------------~~~~~---~~~~D  561 (717)
T TIGR01815       516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA----------------------------EAAFD---ERRPD  561 (717)
T ss_pred             CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC----------------------------hhhhh---hcCCC
Confidence            5788888643   23466788999999999988764311                            00011   23699


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .|||.||.+...   +....+++++.+++++|+.+||.|.++|+.+
T Consensus       562 gLILsgGPGsp~---d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       562 LVVLSPGPGRPA---DFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             EEEEcCCCCCch---hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence            999988765321   2345778899999999999999999999987

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK13566 anthranilate synthase; Provisional

Probab=96.91  E-value=0.0054  Score=63.86  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=65.0

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|+++-+..   .-.....+.|++.|+++.++......                            ..++   ..++|
T Consensus       526 g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~----------------------------~~~~---~~~~D  571 (720)
T PRK13566        526 GKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAE----------------------------EMLD---RVNPD  571 (720)
T ss_pred             CCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCCh----------------------------hHhh---hcCCC
Confidence            45665555442   34677888999999999988764210                            0111   23689


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+.||.+..   .+..+.++++++.++++||.+||.|.++|+.+
T Consensus       572 gVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        572 LVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             EEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence            99998887642   23457899999999999999999999999988

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=96.91  E-value=0.0027  Score=55.32  Aligned_cols=85  Identities=20%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             EEecCCCCccchH-HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237           13 LLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI   91 (392)
Q Consensus        13 ill~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii   91 (392)
                      |++-|.++  .++ ...+.|++.|+.++++..+...                              +.++...++|+|++
T Consensus         2 il~id~~d--sft~~~~~~l~~~g~~~~~~~~~~~~------------------------------~~~~~~~~~~~iil   49 (193)
T PRK08857          2 LLMIDNYD--SFTYNLYQYFCELGAQVKVVRNDEID------------------------------IDGIEALNPTHLVI   49 (193)
T ss_pred             EEEEECCC--CcHHHHHHHHHHCCCcEEEEECCCCC------------------------------HHHHhhCCCCEEEE
Confidence            34445555  333 3778889999999998765210                              11111125889999


Q ss_pred             cCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           92 PGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        92 pGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      -||.+ +.   ++.....++++ .++++|+.+||.|.++|+.+
T Consensus        50 sgGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         50 SPGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             eCCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            99864 32   22334566665 57899999999999999975

>PLN02335 anthranilate synthase

Probab=96.90  E-value=0.0033  Score=56.05  Aligned_cols=88  Identities=15%  Similarity=0.235  Sum_probs=58.1

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+  |..+ .-...+.+.|++.|++++++..+..                              +++++....||+
T Consensus        19 ~~ilvi--D~~d-sft~~i~~~L~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~d~   65 (222)
T PLN02335         19 GPIIVI--DNYD-SFTYNLCQYMGELGCHFEVYRNDEL------------------------------TVEELKRKNPRG   65 (222)
T ss_pred             CcEEEE--ECCC-CHHHHHHHHHHHCCCcEEEEECCCC------------------------------CHHHHHhcCCCE
Confidence            578877  4322 2345678889999999999865421                              112112235899


Q ss_pred             EEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |||.||.+ +..   .....+++++ ....+||.+||.|.++|+.+
T Consensus        66 iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         66 VLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             EEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence            99999976 432   1223455544 45679999999999999964

>PRK00758 GMP synthase subunit A; Validated

Probab=96.90  E-value=0.0026  Score=55.05  Aligned_cols=69  Identities=25%  Similarity=0.441  Sum_probs=47.9

Q ss_pred             HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc-cEEEEcCCCCcccccCCH
Q 016237           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY-DGLVIPGGRAPEYLAMND  104 (392)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-D~iiipGG~~~~~~~~~~  104 (392)
                      ...+.|++.|.++.++..+.                               ..+++  .++ |+|+++||.....   ..
T Consensus        14 ~i~~~l~~~g~~~~~~~~~~-------------------------------~~~~l--~~~~dgivi~Gg~~~~~---~~   57 (184)
T PRK00758         14 LIHRTLRYLGVDAKIIPNTT-------------------------------PVEEI--KAFEDGLILSGGPDIER---AG   57 (184)
T ss_pred             HHHHHHHHcCCcEEEEECCC-------------------------------CHHHH--hhcCCEEEECCCCChhh---cc
Confidence            35678888898877765432                               11222  246 9999999974322   23


Q ss_pred             HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+.+|++   +.++||.+||.|.++|+.+
T Consensus        58 ~~~~~l~---~~~~PilGIC~G~Q~L~~a   83 (184)
T PRK00758         58 NCPEYLK---ELDVPILGICLGHQLIAKA   83 (184)
T ss_pred             ccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence            4566665   4589999999999999987

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.90  E-value=0.0017  Score=50.99  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=58.1

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      +|+|.--+|.....+......|+..- +++.++.+.                  +        . +..+.    .++|.|
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~------------------I--------~-~~~~~----~~ad~l   48 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE------------------L--------A-VGPWE----SKTALL   48 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH------------------H--------h-cCchh----hCCCEE
Confidence            46777778888777777777777643 444444321                  0        0 11112    379999


Q ss_pred             EEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHh
Q 016237           90 VIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  130 (392)
Q Consensus        90 iipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~L  130 (392)
                      |+|||...  +.-..... .+.|+++.++++++.+||.|+.+-
T Consensus        49 VlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          49 VVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             EECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence            99998632  22122233 788888889999999999999765

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=96.90  E-value=0.0049  Score=59.13  Aligned_cols=88  Identities=20%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+++=+ |+.    ..+...|++.|+++.++..+.                               +.+++...++|
T Consensus       192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~d  235 (382)
T CHL00197        192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS-------------------------------PYQDILSYQPD  235 (382)
T ss_pred             CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC-------------------------------CHHHHhccCCC
Confidence            357777655 444    347888889999998885431                               12222223689


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|+++||.+-..  ......+.++++.+.+.||.+||.|-++|+.+
T Consensus       236 gIilSgGPg~p~--~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        236 GILLSNGPGDPS--AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             EEEEcCCCCChh--HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence            999999976321  23456777888877789999999999999976

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=96.89  E-value=0.0037  Score=54.01  Aligned_cols=76  Identities=18%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND  104 (392)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~  104 (392)
                      ....+.|++.|++++++..+..+                            ..+.+  ..+||+||+.||.+...  ++ 
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~~----------------------------~~~~~--~~~~dgvil~gG~~~~~--~~-   58 (184)
T cd01743          12 YNLVQYLRELGAEVVVVRNDEIT----------------------------LEELE--LLNPDAIVISPGPGHPE--DA-   58 (184)
T ss_pred             HHHHHHHHHcCCceEEEeCCCCC----------------------------HHHHh--hcCCCEEEECCCCCCcc--cc-
Confidence            34557888899999998875321                            00112  24799999988765321  12 


Q ss_pred             HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .....+++...+++|+.+||.|.++|+.+
T Consensus        59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~   87 (184)
T cd01743          59 GISLEIIRALAGKVPILGVCLGHQAIAEA   87 (184)
T ss_pred             hhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence            24455556667889999999999999986

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.86  E-value=0.003  Score=55.70  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+|+=|-.-   .+......|+..++++.+++..                                  +++  .++|.||
T Consensus         2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~~----------------------------------~~l--~~~d~iI   42 (210)
T PRK14004          2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSDP----------------------------------ETI--ENSKALI   42 (210)
T ss_pred             EEEEECCCc---hHHHHHHHHHHcCCeEEEECCH----------------------------------HHh--ccCCEEE
Confidence            555544322   5677778888888877665332                                  222  2789999


Q ss_pred             EcCCCCcc----cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           91 IPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        91 ipGG~~~~----~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+....    .+. ...+.++|+++.++++++.+||.|.++|+++
T Consensus        43 lPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         43 LPGDGHFDKAMENLN-STGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             ECCCCchHHHHHHHH-HcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            99986321    132 3368899999999999999999999999986

>PLN02335 anthranilate synthase

Probab=96.84  E-value=0.0054  Score=54.69  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=57.5

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|+++  |. .+.-...+.+.|++.|++++++..+..                              .+++....++|
T Consensus        18 ~~~ilvi--D~-~dsft~~i~~~L~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~d   64 (222)
T PLN02335         18 NGPIIVI--DN-YDSFTYNLCQYMGELGCHFEVYRNDEL------------------------------TVEELKRKNPR   64 (222)
T ss_pred             cCcEEEE--EC-CCCHHHHHHHHHHHCCCcEEEEECCCC------------------------------CHHHHHhcCCC
Confidence            3455555  32 222345578888899999998854311                              11111123689


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .|||.||++...  ......+++++ ....+||.+||.|.++|+.+
T Consensus        65 ~iVisgGPg~p~--d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         65 GVLISPGPGTPQ--DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             EEEEcCCCCChh--hccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence            999999988433  11233555554 35678999999999999987

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.82  E-value=0.0034  Score=49.29  Aligned_cols=45  Identities=27%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             CCcCEEEEcCCCChh---hccCChHHHHHHHHHHHcCCcEEEEehHHHHH
Q 016237          277 SGYDALVVPGGRAPE---YLALNENVIALVKDFMEAKKPVASICHGQQIL  323 (392)
Q Consensus       277 ~~~D~viipgg~~~~---~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~L  323 (392)
                      .++|.||+|||....   .+... . .+.|+++.++|+++.+||.|+.+.
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~~~-g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALNGK-G-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHHhh-C-cHHHHHHHHCCCcEEEEecCccce
Confidence            378999999976432   23332 3 888999889999999999998755

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PRK00758 GMP synthase subunit A; Validated

Probab=96.81  E-value=0.0055  Score=52.96  Aligned_cols=43  Identities=35%  Similarity=0.630  Sum_probs=33.2

Q ss_pred             Cc-CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GY-DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~-D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++ |.||++||....   ....+.+|++   +.++||.+||.|.++|+.+
T Consensus        40 ~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a   83 (184)
T PRK00758         40 AFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA   83 (184)
T ss_pred             hcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence            45 999999987432   2334556665   4589999999999999988

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=96.80  E-value=0.002  Score=55.99  Aligned_cols=50  Identities=30%  Similarity=0.490  Sum_probs=39.0

Q ss_pred             CCcCEEEEcCCCChhh---------------ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEY---------------LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~---------------~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+|.||+|||.....               ...+....++++++.+.++||.++|.|.++|+.+
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            3689999999975211               0112345789999999999999999999999987

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.77  E-value=0.0093  Score=50.86  Aligned_cols=96  Identities=23%  Similarity=0.327  Sum_probs=65.8

Q ss_pred             EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237          206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP  285 (392)
Q Consensus       206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip  285 (392)
                      +++.|++.. =...+++.|++.|.++.++-.+.                              .+.++++..++|.|+|.
T Consensus         4 IL~IDNyDS-FtyNLv~yl~~lg~~v~V~rnd~------------------------------~~~~~~~~~~pd~iviS   52 (191)
T COG0512           4 ILLIDNYDS-FTYNLVQYLRELGAEVTVVRNDD------------------------------ISLELIEALKPDAIVIS   52 (191)
T ss_pred             EEEEECccc-hHHHHHHHHHHcCCceEEEECCc------------------------------cCHHHHhhcCCCEEEEc
Confidence            344444442 23457788888887777774430                              11123333468999998


Q ss_pred             CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc---------CCCCCceee
Q 016237          286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA---------GVLKGKKCT  335 (392)
Q Consensus       286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a---------glL~g~~~T  335 (392)
                      -|+|...  +.....+.|+++ ....||.+||.|-+.++++         -+.+||.-.
T Consensus        53 PGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~  108 (191)
T COG0512          53 PGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSI  108 (191)
T ss_pred             CCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeee
Confidence            8887433  456688899988 6678999999999999988         267787754

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=96.73  E-value=0.011  Score=52.79  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=73.1

Q ss_pred             CChHHHHHHHHHHhcCCcCCCCccEEEEeCCCC-C-cch-hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCcc
Q 016237          180 EGHPEFIRLFLKALGGTITGSDKRILFLCGDYM-E-DYE-VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT  256 (392)
Q Consensus       180 ~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~-~-~~e-~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~  256 (392)
                      .+.++-....+..+.+    ..++|+++-+-.. . ..+ +....+.|++.|++++.+-...                  
T Consensus        14 ~~~l~~~~~~~~~~~~----~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~------------------   71 (233)
T PRK05282         14 TGYLEHALPLIAELLA----GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA------------------   71 (233)
T ss_pred             CchHHHHHHHHHHHHc----CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch------------------
Confidence            4555666666665543    3456777765331 1 112 3447778888898876653210                  


Q ss_pred             ccCCCCCcccccccccCCCCCCcCEEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          257 YSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       257 ~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                                 + ..+  ...+.|+|+|+||....  .......+.+.|++++++|+++++.|.|+.+++...
T Consensus        72 -----------d-~~~--~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i  130 (233)
T PRK05282         72 -----------D-PVA--AIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI  130 (233)
T ss_pred             -----------h-hHH--HHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence                       0 011  12468999999997532  234566788899999999999999999999988753

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=96.72  E-value=0.009  Score=62.15  Aligned_cols=89  Identities=22%  Similarity=0.273  Sum_probs=63.3

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|+++-+.   +.......+.|++.|+++.++.....                            ...+   +..++|
T Consensus       516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~----------------------------~~~~---~~~~~D  561 (717)
T TIGR01815       516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA----------------------------EAAF---DERRPD  561 (717)
T ss_pred             CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC----------------------------hhhh---hhcCCC
Confidence            4555555443   33467788999999999887754310                            0001   123689


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+.||.+..   .+....++|++..+.++|+.+||.|.++|+.+
T Consensus       562 gLILsgGPGsp---~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       562 LVVLSPGPGRP---ADFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             EEEEcCCCCCc---hhcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence            99998887742   23456789999999999999999999999998

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.72  E-value=0.012  Score=51.59  Aligned_cols=48  Identities=29%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             CcCEEEEcCCCChhh----ccCChHHHHHHHHH-HHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPEY----LALNENVIALVKDF-MEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~~----~~~~~~l~~~l~~~-~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||+||+..+..    +... .+...|+++ +++++||.+||.|.++|+.+
T Consensus        37 ~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         37 KADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             CCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            589999999765322    2222 245556554 58899999999999999987

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.65  E-value=0.0078  Score=52.12  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=55.3

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV  283 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi  283 (392)
                      +.|+-+..-+   +......|++.|.++.++...                                  +++  .++|.||
T Consensus         2 i~iidyg~gN---~~s~~~al~~~g~~~~~v~~~----------------------------------~~l--~~~D~lI   42 (192)
T PRK13142          2 IVIVDYGLGN---ISNVKRAIEHLGYEVVVSNTS----------------------------------KII--DQAETII   42 (192)
T ss_pred             EEEEEcCCcc---HHHHHHHHHHcCCCEEEEeCH----------------------------------HHh--ccCCEEE
Confidence            4555454444   667777788888776665321                                  122  3589999


Q ss_pred             EcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          284 VPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       284 ipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      +||+..+..   ......+.+.|++  ..++|+.+||.|-++|++..
T Consensus        43 lPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~   87 (192)
T PRK13142         43 LPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS   87 (192)
T ss_pred             ECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence            999754211   1223346778887  57899999999999999773

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.64  E-value=0.003  Score=62.42  Aligned_cols=44  Identities=39%  Similarity=0.643  Sum_probs=33.0

Q ss_pred             CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ++|+||+|||....  .+  ...+.+.|+++   +++|.+||.|-++|++.
T Consensus        36 ~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         36 DLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             cCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            79999999985221  12  24455666555   99999999999999976

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=96.63  E-value=0.001  Score=56.51  Aligned_cols=49  Identities=31%  Similarity=0.617  Sum_probs=38.9

Q ss_pred             CcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcC-CcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAP--EYLALNENVIALVKDFMEAK-KPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g-~~i~aiC~G~~~La~a  326 (392)
                      +.|.+|||||-..  ..+.....+.+.||++..+| +||-+.|+|..+||+.
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~   84 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE   84 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence            6899999999863  23566779999999999998 9999999999999974

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=96.59  E-value=0.0074  Score=57.53  Aligned_cols=86  Identities=23%  Similarity=0.319  Sum_probs=59.5

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+++=+ |+.    ......|.+.|+++.++..+.                               +++++....+|.
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~pDG  217 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT-------------------------------DAEEIKKYNPDG  217 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC-------------------------------CHHHHHhhCCCE
Confidence            35666543 433    357788889999988875431                               122222224699


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |||+||.+-.  .......++++++.+ ++||.+||.|.++|+.+
T Consensus       218 IiLSgGPgdp--~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       218 IFLSNGPGDP--AAVEPAIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             EEECCCCCCH--HHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            9999997522  234567788888887 89999999999999975

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=96.56  E-value=0.0079  Score=57.70  Aligned_cols=87  Identities=20%  Similarity=0.314  Sum_probs=59.7

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      ++|+++=+ ++.    ....+.|++.|+++.++..+-                               ..+++...++|.
T Consensus       193 ~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~dg  236 (382)
T CHL00197        193 LKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS-------------------------------PYQDILSYQPDG  236 (382)
T ss_pred             CEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC-------------------------------CHHHHhccCCCE
Confidence            45555544 322    347888888899988884431                               122222236899


Q ss_pred             EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |+++||++...  ......+.++++.+.++||.+||.|-++|+.+
T Consensus       237 IilSgGPg~p~--~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        237 ILLSNGPGDPS--AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             EEEcCCCCChh--HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence            99999987322  23456677777777789999999999999987

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.46  E-value=0.0082  Score=60.43  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE  297 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~  297 (392)
                      ....+.|++.|+++.+++.+-.                           .+..++++...++|.||+.||++...   +.
T Consensus        15 ~nl~~~lr~~g~~v~V~~~~~~---------------------------~~~~~~~l~~~~~~~IIlSpGPg~p~---d~   64 (531)
T PRK09522         15 YNLADQLRSNGHNVVIYRNHIP---------------------------AQTLIERLATMSNPVLMLSPGPGVPS---EA   64 (531)
T ss_pred             HHHHHHHHHCCCCEEEEECCCC---------------------------CccCHHHHHhcCcCEEEEcCCCCChh---hC
Confidence            4477888888999988875410                           01122232223578999999988432   11


Q ss_pred             HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          298 NVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ....++.+....++||.+||.|.++|+.+
T Consensus        65 ~~~~~i~~~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         65 GCMPELLTRLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             CCCHHHHHHHhcCCCEEEEcHHHHHHHHh
Confidence            22334444445789999999999999988

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=96.44  E-value=0.0071  Score=60.26  Aligned_cols=50  Identities=20%  Similarity=0.446  Sum_probs=41.5

Q ss_pred             CCccEEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .++|+|++|||.....   +.++..+.+.|+++.++|++|.++|.|-++|.+.
T Consensus       283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~  335 (475)
T TIGR00313       283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE  335 (475)
T ss_pred             ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence            3789999999985322   3355668899999999999999999999999985

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.43  E-value=0.0063  Score=57.89  Aligned_cols=46  Identities=26%  Similarity=0.439  Sum_probs=37.1

Q ss_pred             CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+|.||++||.+-.  .+.....++++++.++ +|+.+||.|.++|+.+
T Consensus       208 ~~DGIiLsgGPgdp--~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        208 NPDGIVLSNGPGDP--KELQPYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             CCCEEEEcCCCCCh--HHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            69999999997521  2234567888888877 9999999999999975

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=96.43  E-value=0.0079  Score=57.32  Aligned_cols=74  Identities=26%  Similarity=0.391  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN  298 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~  298 (392)
                      ..+..|.+.|+++.++..+.                               .++++....+|.||++||++...  ..+.
T Consensus       186 ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~pDGIiLSgGPgdp~--~~~~  232 (358)
T TIGR01368       186 NILRRLVKRGCEVTVVPYDT-------------------------------DAEEIKKYNPDGIFLSNGPGDPA--AVEP  232 (358)
T ss_pred             HHHHHHHHCCCEEEEEcCCC-------------------------------CHHHHHhhCCCEEEECCCCCCHH--HHHH
Confidence            57788888899988875431                               12222212469999999986322  2456


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          299 VIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       299 l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++++++.+ ++||.+||.|.++|+.+
T Consensus       233 ~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       233 AIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             HHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            7788888887 89999999999999987

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.41  E-value=0.0087  Score=56.95  Aligned_cols=75  Identities=21%  Similarity=0.364  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE  297 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~  297 (392)
                      ....+.|.+.|+++.++..+..                               .+++....+|.|+++||++...  ...
T Consensus       179 ~ni~~~L~~~G~~v~vvp~~~~-------------------------------~~~i~~~~~DGIiLsgGPgdp~--~~~  225 (354)
T PRK12838        179 KSILRSLSKRGCKVTVLPYDTS-------------------------------LEEIKNLNPDGIVLSNGPGDPK--ELQ  225 (354)
T ss_pred             HHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEEcCCCCChH--HhH
Confidence            5577778888999888854311                               1111113689999999986321  234


Q ss_pred             HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          298 NVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ...++++++.++ +|+.+||.|.++|+.+
T Consensus       226 ~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        226 PYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             HHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            567888888877 9999999999999977

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.30  E-value=0.0049  Score=54.36  Aligned_cols=48  Identities=31%  Similarity=0.501  Sum_probs=39.3

Q ss_pred             CcCEEEEcCCCCh----hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAP----EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~----~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||+||+..+    ..+. ...+.++|+++.++++|+.++|.|.++|+++
T Consensus        37 ~~d~iIlPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         37 NSKALILPGDGHFDKAMENLN-STGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             cCCEEEECCCCchHHHHHHHH-HcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            6899999997532    1133 3468899999999999999999999999986

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.15  E-value=0.025  Score=48.26  Aligned_cols=88  Identities=24%  Similarity=0.398  Sum_probs=60.4

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      +|+++  |.++.. .....+.|++.|.++.++..+.                              .+..+++...+|+|
T Consensus         3 ~IL~I--DNyDSF-tyNLv~yl~~lg~~v~V~rnd~------------------------------~~~~~~~~~~pd~i   49 (191)
T COG0512           3 MILLI--DNYDSF-TYNLVQYLRELGAEVTVVRNDD------------------------------ISLELIEALKPDAI   49 (191)
T ss_pred             eEEEE--ECccch-HHHHHHHHHHcCCceEEEECCc------------------------------cCHHHHhhcCCCEE
Confidence            45444  444421 3456788888888887765541                              11223334468999


Q ss_pred             EEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|.-|.|...  +.....+.|+++ .+..||.+||-|-+.++++
T Consensus        50 viSPGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~   90 (191)
T COG0512          50 VISPGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEA   90 (191)
T ss_pred             EEcCCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHH
Confidence            9988877443  445678888888 6778999999999999876

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=96.13  E-value=0.012  Score=52.93  Aligned_cols=48  Identities=31%  Similarity=0.448  Sum_probs=39.5

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++|.|+++||.+...   .+....+++++.++++|+.+||.|.++|+.+
T Consensus        53 l~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~  100 (235)
T cd01746          53 LKGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE  100 (235)
T ss_pred             hccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence            34799999999986433   3466788999999999999999999998755

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.10  E-value=0.026  Score=53.76  Aligned_cols=93  Identities=22%  Similarity=0.285  Sum_probs=67.0

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHh---CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLA---FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~---ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      |+|+|.-.+|.....+...++.|++   ..|.|..++.+.                          +..+ .+.    ..
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~--------------------------l~~~-pw~----~~   49 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE--------------------------LLNE-PWQ----SK   49 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH--------------------------hhcC-ccc----cC
Confidence            3689999999999899999999985   357777776531                          1111 122    36


Q ss_pred             ccEEEEcCCCCccccc-CCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           86 YDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~-~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      ++++|+|||....... -+..-.+.||++.++|+.-.++|.|+.+-.+
T Consensus        50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            8999999997533311 2455678899999999999999999876543

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PLN02347 GMP synthetase

Probab=96.07  E-value=0.032  Score=56.25  Aligned_cols=90  Identities=14%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      +|+++-+...   -.......+++.|..+.++..+.                               +.+++...++|.|
T Consensus        12 ~IlIID~G~~---~t~~I~r~lrelgv~~~v~p~~~-------------------------------~~~~i~~~~~dgI   57 (536)
T PLN02347         12 VVLILDYGSQ---YTHLITRRVRELGVYSLLLSGTA-------------------------------SLDRIASLNPRVV   57 (536)
T ss_pred             EEEEEECCCc---HHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhcCCCCEE
Confidence            4554444322   24556777888888877775431                               1222222368999


Q ss_pred             EEcCCCChhhccCChHHH-HHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRAPEYLALNENVI-ALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~~~~~~~~~~l~-~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |++||++..+....+.+. .+++...+.++||.+||.|.++|+.+
T Consensus        58 ILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         58 ILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             EECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            999997643322222222 23333446789999999999999988

>PLN02347 GMP synthetase

Probab=96.07  E-value=0.025  Score=57.02  Aligned_cols=91  Identities=15%  Similarity=0.181  Sum_probs=56.7

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .+|+|+=+-. .  -.......|++.|..+.++..+.                               +.+++...++|+
T Consensus        11 ~~IlIID~G~-~--~t~~I~r~lrelgv~~~v~p~~~-------------------------------~~~~i~~~~~dg   56 (536)
T PLN02347         11 DVVLILDYGS-Q--YTHLITRRVRELGVYSLLLSGTA-------------------------------SLDRIASLNPRV   56 (536)
T ss_pred             CEEEEEECCC-c--HHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhcCCCCE
Confidence            3677664422 1  23556788889998888775442                               122222236899


Q ss_pred             EEEcCCCCcccccCCHHHH-HHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~-~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||++||.+.......+.+. .+++...+.++||.+||.|.++|+.+
T Consensus        57 IILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         57 VILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             EEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            9999997532222223222 23333445789999999999999976

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.03  E-value=0.033  Score=53.07  Aligned_cols=93  Identities=24%  Similarity=0.323  Sum_probs=67.4

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhc---CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQAL---ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~---~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      ++|+|+--+|.....+...++.|++.   .|.|..++.+.                          +..+. +.    ..
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~--------------------------l~~~p-w~----~~   49 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE--------------------------LLNEP-WQ----SK   49 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH--------------------------hhcCc-cc----cC
Confidence            46778888888888888899888763   46666664420                          11111 21    36


Q ss_pred             cCEEEEcCCCChhhc-cCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237          279 YDALVVPGGRAPEYL-ALNENVIALVKDFMEAKKPVASICHGQQILAA  325 (392)
Q Consensus       279 ~D~viipgg~~~~~~-~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~  325 (392)
                      ++++|+|||.+..+. .-+..-.+.||+|.++|....++|.|+.+-..
T Consensus        50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            899999999874442 33566788999999999999999999876664

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=95.81  E-value=0.014  Score=52.41  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..||.|+++||.+...   ......+++++.++++|+.+||.|.++|+.+
T Consensus        54 ~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~  100 (235)
T cd01746          54 KGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE  100 (235)
T ss_pred             ccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence            4799999999976433   3456788999999999999999999988754

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=95.79  E-value=0.014  Score=58.28  Aligned_cols=51  Identities=25%  Similarity=0.466  Sum_probs=42.2

Q ss_pred             CCCcCEEEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+++|+|++|||.....   +..+..+.+.|+++.++|.+|.|+|.|-++|.+.
T Consensus       282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~  335 (475)
T TIGR00313       282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE  335 (475)
T ss_pred             cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence            34789999999985322   3356668899999999999999999999999983

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=95.79  E-value=0.031  Score=53.95  Aligned_cols=76  Identities=21%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      -...++.|++.|+++.++..+.                               ..+++...++|.||+.||+|...  ..
T Consensus       251 K~nIlr~L~~~G~~v~VvP~~~-------------------------------~~~ei~~~~pDGIiLSnGPGDP~--~~  297 (415)
T PLN02771        251 KHNILRRLASYGCKITVVPSTW-------------------------------PASEALKMKPDGVLFSNGPGDPS--AV  297 (415)
T ss_pred             HHHHHHHHHHcCCeEEEECCCC-------------------------------CHHHHhhcCCCEEEEcCCCCChh--Hh
Confidence            4667788888899988886531                               11122123689999999987322  23


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +...+.+++.. .++||.+||.|-++|+.+
T Consensus       298 ~~~ie~ik~l~-~~iPIlGICLGhQlLa~A  326 (415)
T PLN02771        298 PYAVETVKELL-GKVPVFGICMGHQLLGQA  326 (415)
T ss_pred             hHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence            45667777765 478999999999999988

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=95.77  E-value=0.026  Score=54.50  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             hHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 016237           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMN  103 (392)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~  103 (392)
                      -..+...|++.|+++.++..+.                               +.+++...++|.||+.||.+-.  ...
T Consensus       251 K~nIlr~L~~~G~~v~VvP~~~-------------------------------~~~ei~~~~pDGIiLSnGPGDP--~~~  297 (415)
T PLN02771        251 KHNILRRLASYGCKITVVPSTW-------------------------------PASEALKMKPDGVLFSNGPGDP--SAV  297 (415)
T ss_pred             HHHHHHHHHHcCCeEEEECCCC-------------------------------CHHHHhhcCCCEEEEcCCCCCh--hHh
Confidence            4667778888888888875542                               1222222368999999997522  133


Q ss_pred             HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +...+.+++.. .++||.+||.|.++|+.+
T Consensus       298 ~~~ie~ik~l~-~~iPIlGICLGhQlLa~A  326 (415)
T PLN02771        298 PYAVETVKELL-GKVPVFGICMGHQLLGQA  326 (415)
T ss_pred             hHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence            55677777766 478999999999999976

>PRK00074 guaA GMP synthase; Reviewed

Probab=95.72  E-value=0.039  Score=55.52  Aligned_cols=88  Identities=18%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .+|+||=+ |..  -.......|++.|....++..+..                               .+++...++|+
T Consensus         4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~-------------------------------~~~l~~~~~dg   49 (511)
T PRK00074          4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS-------------------------------AEEIRAFNPKG   49 (511)
T ss_pred             CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhccCCCE
Confidence            47887766 444  445667889999988888754321                               12222125799


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||+|||...-.-...+.+   .+..++.++||.+||.|.++|+.+
T Consensus        50 IIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         50 IILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             EEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence            999999752111112333   345566899999999999999875

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=95.70  E-value=0.028  Score=56.71  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGL   89 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~i   89 (392)
                      ||+|+  |.++- =.....+.|++.|+++.+++.+-.                           .+..++++...+||.|
T Consensus         3 ~iLiI--Dn~ds-ft~nl~~~lr~~g~~v~V~~~~~~---------------------------~~~~~~~l~~~~~~~I   52 (531)
T PRK09522          3 DILLL--DNIDS-FTYNLADQLRSNGHNVVIYRNHIP---------------------------AQTLIERLATMSNPVL   52 (531)
T ss_pred             eEEEE--eCCCh-HHHHHHHHHHHCCCCEEEEECCCC---------------------------CccCHHHHHhcCcCEE
Confidence            55444  33331 224477888889999988875410                           0112333322358899


Q ss_pred             EEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           90 VIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        90 iipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |+.||.+ +......+    ++.+.+.+++||.+||.|.++|+.+
T Consensus        53 IlSpGPg~p~d~~~~~----~i~~~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         53 MLSPGPGVPSEAGCMP----ELLTRLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             EEcCCCCChhhCCCCH----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence            9999976 33222222    3333345689999999999999976

>TIGR00337 PyrG CTP synthase

Probab=95.61  E-value=0.064  Score=53.36  Aligned_cols=48  Identities=31%  Similarity=0.470  Sum_probs=38.5

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++|.|++|||+|...   .+.....++.+.+++.|+.+||.|.++++.+
T Consensus       341 L~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~  388 (525)
T TIGR00337       341 LKGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVIE  388 (525)
T ss_pred             hcCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            34689999999987533   3455667888888999999999999988644

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=95.60  E-value=0.03  Score=56.68  Aligned_cols=47  Identities=19%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+|.||+.||++...  ++....++++.+ ..++||.+||.|.++|+.+
T Consensus        43 ~~~d~vIlsgGP~~p~--~~~~~~~li~~~-~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         43 LNPSHIVISPGPGRPE--EAGISVEVIRHF-SGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             cCCCEEEECCCCCChh--hCCccHHHHHHh-hcCCCEEEEcHHHHHHHHH
Confidence            3689999999998432  123345677764 6789999999999999988

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=95.53  E-value=0.12  Score=45.51  Aligned_cols=115  Identities=13%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             ChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC
Q 016237          181 GHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE  259 (392)
Q Consensus       181 s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~  259 (392)
                      ...++...+++...    ....++.++..-.....+ .....+.|++.|.++..+....                    .
T Consensus        13 ~~~~~~~~~~~~~~----~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--------------------~   68 (210)
T cd03129          13 HARPILQDFLARAG----GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--------------------T   68 (210)
T ss_pred             ChHHHHHHHHHHcC----CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--------------------C
Confidence            44555666665543    234567777655433223 4456778888887766553310                    0


Q ss_pred             CCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          260 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       260 ~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                            ..+..+.+ .....|+|+++||.-...  ......+.+.|++.+.+|.++++.|.|+.++...
T Consensus        69 ------~~~~~~~~-~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          69 ------ANDPDVVA-RLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             ------CCCHHHHH-HHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence                  00111111 234789999999875422  2334446666777777999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PRK00074 guaA GMP synthase; Reviewed

Probab=95.37  E-value=0.056  Score=54.42  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=56.1

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .+|+|+-+ |..  -.......+++.|...+++..+..                            ...+.+   .++|.
T Consensus         4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~----------------------------~~~l~~---~~~dg   49 (511)
T PRK00074          4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS----------------------------AEEIRA---FNPKG   49 (511)
T ss_pred             CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC----------------------------HHHHhc---cCCCE
Confidence            45665555 323  455677888889988777754310                            011222   25799


Q ss_pred             EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||+|||+...+-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        50 IIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         50 IILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             EEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence            999999763221112222   344567899999999999999987

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=95.28  E-value=0.026  Score=51.44  Aligned_cols=49  Identities=27%  Similarity=0.466  Sum_probs=38.7

Q ss_pred             CcCEEEEcCCC-Chh--hc-----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGR-APE--YL-----------ALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~-~~~--~~-----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+|.|+++||. ...  .+           ..+....++++.++++++||.+||-|.++|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            58999999984 331  01           122456789999999999999999999999988

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=95.26  E-value=0.05  Score=47.11  Aligned_cols=50  Identities=22%  Similarity=0.355  Sum_probs=38.4

Q ss_pred             CCccEEEEcCCCCccc--ccCC-HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEY--LAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~--~~~~-~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +.||++++-||..-+.  ..++ ..-..-|+++.++++|+.+||.|.++|.+.
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            4799999988864222  2223 445667899999999999999999999865

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=95.20  E-value=0.022  Score=51.88  Aligned_cols=49  Identities=24%  Similarity=0.340  Sum_probs=37.9

Q ss_pred             CccEEEEcCCC-Ccc--------c-----ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGR-APE--------Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~-~~~--------~-----~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+|+|+++||. ...        .     ...+....++++.++++++||.+||-|.++|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            59999999984 331        0     0112345789999999999999999999999876

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=95.17  E-value=0.023  Score=35.08  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=21.1

Q ss_pred             CEEEEEecC-----------CCCccchHHHHHHHHhCC
Q 016237            9 RSVLLLCGD-----------YMEDYEAMVPFQALLAFG   35 (392)
Q Consensus         9 ~kI~ill~~-----------g~~~~e~~~~~~~l~~ag   35 (392)
                      |||+|++..           |+...|++.|+++|.++|
T Consensus         1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen    1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence            589999954           888899999999999987

>PLN02327 CTP synthase

Probab=95.14  E-value=0.12  Score=51.68  Aligned_cols=48  Identities=35%  Similarity=0.459  Sum_probs=38.3

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++|.|++|||+|...   .+.....++.+.++++|+.+||.|-++++-.
T Consensus       360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~vie  407 (557)
T PLN02327        360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAVIE  407 (557)
T ss_pred             hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            45899999999987533   2344667788888999999999999988754

>PRK06186 hypothetical protein; Validated

Probab=95.08  E-value=0.034  Score=49.37  Aligned_cols=48  Identities=21%  Similarity=0.326  Sum_probs=39.9

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHH--HHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQI--LAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~--La~a  326 (392)
                      ..++|.|+||||+|.   +.-+--+..++.+.++++|+.+||-|.++  +.-+
T Consensus        51 l~~~dgilvpgGfg~---rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~a  100 (229)
T PRK06186         51 LAGFDGIWCVPGSPY---RNDDGALTAIRFARENGIPFLGTCGGFQHALLEYA  100 (229)
T ss_pred             HhhCCeeEeCCCCCc---ccHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHH
Confidence            457899999999985   34567788899999999999999999994  5544

>PRK05380 pyrG CTP synthetase; Validated

Probab=95.01  E-value=0.039  Score=54.90  Aligned_cols=48  Identities=29%  Similarity=0.462  Sum_probs=39.8

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ...+|.|++|||+|...   .+....+++.+.++++|+.+||.|.++++-+
T Consensus       341 L~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~va  388 (533)
T PRK05380        341 LKGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVIE  388 (533)
T ss_pred             hhcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHHH
Confidence            35799999999988533   3456788999999999999999999988753

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=94.98  E-value=0.023  Score=56.23  Aligned_cols=47  Identities=30%  Similarity=0.540  Sum_probs=34.3

Q ss_pred             CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .++|+||+|||.....-.-...+.++|+++   |+||.+||.|-++|++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSLTDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchHHHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            478999999974211100134566666666   99999999999999987

>PRK06186 hypothetical protein; Validated

Probab=94.93  E-value=0.037  Score=49.16  Aligned_cols=48  Identities=21%  Similarity=0.301  Sum_probs=38.9

Q ss_pred             CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHH--hhcC
Q 016237           83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI--LAAA  133 (392)
Q Consensus        83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~--La~a  133 (392)
                      ...+|.|+||||.|.+   .-+-.+..++.+.++++|+.+||-|.++  +..+
T Consensus        51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~a  100 (229)
T PRK06186         51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQHALLEYA  100 (229)
T ss_pred             HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHH
Confidence            3479999999998854   3456778899999999999999999984  4444

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=94.71  E-value=0.061  Score=54.51  Aligned_cols=87  Identities=16%  Similarity=0.285  Sum_probs=54.6

Q ss_pred             EEecCCCCccchHHHHHHHHhCCCe-EEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEE
Q 016237           13 LLCGDYMEDYEAMVPFQALLAFGVS-VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVI   91 (392)
Q Consensus        13 ill~~g~~~~e~~~~~~~l~~ag~~-v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iii   91 (392)
                      ||+-|.++.. .....+.|++.|.. +.++.+...                              +++++....+|+||+
T Consensus         2 il~idn~dsf-t~nl~~~l~~~g~~~v~~~~~~~~------------------------------~~~~~~~~~~d~vIl   50 (534)
T PRK14607          2 IILIDNYDSF-TYNIYQYIGELGPEEIEVVRNDEI------------------------------TIEEIEALNPSHIVI   50 (534)
T ss_pred             EEEEECchhH-HHHHHHHHHHcCCCeEEEECCCCC------------------------------CHHHHHhcCCCEEEE
Confidence            3444544422 23466788888874 666654421                              122222236899999


Q ss_pred             cCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           92 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        92 pGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .||.+...  ++....++++. ..+++||.+||-|.++|+.+
T Consensus        51 sgGP~~p~--~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         51 SPGPGRPE--EAGISVEVIRH-FSGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             CCCCCChh--hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence            99986321  12234566666 46789999999999999875

>PRK05380 pyrG CTP synthetase; Validated

Probab=94.68  E-value=0.048  Score=54.27  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=38.4

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      ..+|.|++|||.|...   .+..+.+++.+.++++|+.+||.|.++++-
T Consensus       342 ~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v  387 (533)
T PRK05380        342 KGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI  387 (533)
T ss_pred             hcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence            4799999999987543   235678889999999999999999998874

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.68  E-value=0.016  Score=48.49  Aligned_cols=80  Identities=16%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccc--ccCC
Q 016237           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEY--LAMN  103 (392)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~--~~~~  103 (392)
                      ...+.|++.|++++.+......                          .....+.  ..+.|+|++.||.-...  ...+
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~~--------------------------~~~~~~~--i~~ad~I~~~GG~~~~l~~~l~~   55 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDRN--------------------------DADILEA--IREADAIFLGGGDTFRLLRQLKE   55 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSCG--------------------------HHHHHHH--HHHSSEEEE--S-HHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeccCCC--------------------------hHHHHHH--HHhCCEEEECCCCHHHHHHHHHh
Confidence            4578899999998887765310                          0011121  23689999999974322  3455


Q ss_pred             HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       104 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..+.+.|++.+++|+++++...|+.++...
T Consensus        56 t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~   85 (154)
T PF03575_consen   56 TGLDEAIREAYRKGGVIIGTSAGAMILGPS   85 (154)
T ss_dssp             TTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred             CCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence            679999999999999999999999887554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=94.55  E-value=0.099  Score=48.85  Aligned_cols=75  Identities=25%  Similarity=0.388  Sum_probs=57.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN  298 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~  298 (392)
                      ..+..|.+.|+++.++..+                               .+.+++-..++|.|++.-|+|-.  ..-+.
T Consensus       192 nIlr~L~~rg~~vtVVP~~-------------------------------t~~eeIl~~~pDGiflSNGPGDP--~~~~~  238 (368)
T COG0505         192 NILRELVKRGCRVTVVPAD-------------------------------TSAEEILALNPDGIFLSNGPGDP--APLDY  238 (368)
T ss_pred             HHHHHHHHCCCeEEEEcCC-------------------------------CCHHHHHhhCCCEEEEeCCCCCh--hHHHH
Confidence            4666777788888888553                               22344333468999999999832  23467


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          299 VIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       299 l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .++.+|+.....+|+.+||.|-++||.|
T Consensus       239 ~i~~ik~l~~~~iPifGICLGHQllalA  266 (368)
T COG0505         239 AIETIKELLGTKIPIFGICLGHQLLALA  266 (368)
T ss_pred             HHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence            8889999999999999999999999988

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=94.50  E-value=0.21  Score=52.63  Aligned_cols=47  Identities=32%  Similarity=0.487  Sum_probs=34.8

Q ss_pred             CCcCEEEEcCCCChhhccCChHHHHHHHHHHHc----CCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEA----KKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~----g~~i~aiC~G~~~La~a  326 (392)
                      ..||.|||.||+|...   ++.-..++++..+.    .+||.+||.|.++|+.+
T Consensus        52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            4799999999988432   23334455555544    48999999999999988

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=94.49  E-value=0.37  Score=42.76  Aligned_cols=118  Identities=11%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             CChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCCe-EEEEcCCCCCCCCCCCcccCCCCCccc
Q 016237          180 EGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALECH-VDAVCPKKKAGDSCPTAVHDFEGDQTY  257 (392)
Q Consensus       180 ~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~~-v~~~s~~~~~~~~~~~~~~~~~~~~~~  257 (392)
                      ....++..++++...+    ...++.++-+-.....+ .......|++.|++ ++++..+...                 
T Consensus        12 ~~~~~i~~~~~~~ag~----~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~-----------------   70 (217)
T cd03145          12 YDNRAILQRFVARAGG----AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSRE-----------------   70 (217)
T ss_pred             cCHHHHHHHHHHHcCC----CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChH-----------------
Confidence            3555667777776542    34567777665433333 33366677887864 5555332110                 


Q ss_pred             cCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          258 SEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       258 ~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                             -..+..+.+ ...+.|+|++.||.-...  ......+.+.|++.+++|.++++..+|+.++...
T Consensus        71 -------~a~~~~~~~-~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          71 -------AANDPEVVA-RLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             -------HcCCHHHHH-HHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence                   001111111 134689999999875422  3456688899999999999999999999998765

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=94.46  E-value=0.18  Score=44.72  Aligned_cols=50  Identities=20%  Similarity=0.367  Sum_probs=40.8

Q ss_pred             CCccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+.|+|++.||.-..  .......+.+.|++.+++|.++++...|+.++.+.
T Consensus        82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            478999999997432  23455678899999999999999999999998764

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=94.26  E-value=0.14  Score=50.23  Aligned_cols=49  Identities=16%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             CccEEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +.|++++||-...-.   ..+..-+-.-|.++.+++.+|.+||.|-++|.+.
T Consensus       290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~  341 (486)
T COG1492         290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR  341 (486)
T ss_pred             CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence            489999999865321   1223334556677777799999999999999864

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=94.25  E-value=0.05  Score=47.13  Aligned_cols=50  Identities=32%  Similarity=0.470  Sum_probs=39.4

Q ss_pred             CCcCEEEEcCCCChh-hc-cCC-hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPE-YL-ALN-ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~-~~-~~~-~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.||++++.||-.-+ .+ ..+ ..-.+-|++..++++|+.+||.|.++|.+.
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            479999998876532 22 333 455678999999999999999999999865

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=94.24  E-value=0.13  Score=45.33  Aligned_cols=50  Identities=18%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             CCccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+.|+|+++||.-...  ......+.+.|++.+.+|.++++.|.|+.++.+.
T Consensus        79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            4789999999974322  2233346666677777999999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=94.11  E-value=0.16  Score=52.68  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+||-.+|.+  .-......|.+|||+..=++.+.-                         +.-+     ...++|-.
T Consensus      1059 PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmtDl-------------------------L~G~-----~~ld~frG 1106 (1320)
T KOG1907|consen 1059 PKVAILREEGVN--GDREMAAAFYAAGFETVDVTMTDL-------------------------LAGR-----HHLDDFRG 1106 (1320)
T ss_pred             CceEEeeccccc--cHHHHHHHHHHcCCceeeeeeehh-------------------------hcCc-----eeHhHhcc
Confidence            499999999998  567778899999998766654420                         1112     23346889


Q ss_pred             EEEcCCCC-c----------ccccCCHHHHHHHHHHHhC-CCeEEEEchhhHHhhcCcccCCeeEecCCCc
Q 016237           89 LVIPGGRA-P----------EYLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPV  147 (392)
Q Consensus        89 iiipGG~~-~----------~~~~~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~agll~g~~~T~~~~~  147 (392)
                      |+.+||++ +          .....++.++.-..+|+++ ...-.+||+|.++++..|.+- -.+-.+|..
T Consensus      1107 laf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~-p~~~~~p~~ 1176 (1320)
T KOG1907|consen 1107 LAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG-PEVGKWPDV 1176 (1320)
T ss_pred             eeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC-ccccCCCce
Confidence            99999863 1          2256688888888888876 566889999999999988663 344444443

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=94.05  E-value=0.25  Score=45.99  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             CCEEEEEe-cCCCCccchHHHHHHHHhC--CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237            8 KRSVLLLC-GDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS   84 (392)
Q Consensus         8 ~~kI~ill-~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   84 (392)
                      +.||+||= .|.-..+|. .....|...  .++++++.+...+               .-.++..+--.--.+++++...
T Consensus        35 pl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h~---------------~~~~~~~hl~~~y~~~~~i~~~   98 (302)
T PRK05368         35 PLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSHE---------------SKNTPAEHLENFYCTFEDIKDE   98 (302)
T ss_pred             CccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCcC---------------CCCCCHHHHHHhccCHHHhccC
Confidence            56888875 344443333 333444332  3667777765432               0000111101111356666667


Q ss_pred             CccEEEEcCCCCc-ccccC---CHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAP-EYLAM---NDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~-~~~~~---~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .||++||.|..-. ...-+   =.++.+++....++.+++.+||-|.++++.+
T Consensus        99 ~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a  151 (302)
T PRK05368         99 KFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH  151 (302)
T ss_pred             CCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            8999999997522 11111   1234444444445689999999999998865

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=93.97  E-value=0.13  Score=48.00  Aligned_cols=55  Identities=27%  Similarity=0.410  Sum_probs=43.4

Q ss_pred             CcCCCCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           77 TFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        77 ~~~~~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +.+++-.-++|.||+.-|.|-.  ..-+..++.+++.....+|+.+||-|-++|+-|
T Consensus       212 ~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA  266 (368)
T COG0505         212 SAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA  266 (368)
T ss_pred             CHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence            3444433479999999998732  234678899999999999999999999999966

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=93.68  E-value=0.22  Score=41.06  Aligned_cols=85  Identities=24%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             EEEEEec--CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237           10 SVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus        10 kI~ill~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      |++|+-.  +|-.-.-...+..-|++.|++|++.-...                                ..+.+..+||
T Consensus         2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~--------------------------------~~~~~l~~yd   49 (175)
T COG4635           2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHA--------------------------------VEEPALEDYD   49 (175)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhh--------------------------------hhccChhhCc
Confidence            4555543  33332233445566778889888865542                                2333456899


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEchhhH
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL  128 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~G~~  128 (392)
                      +|+|..  .......++.+.+|++++..  +.+|.+..|.+..
T Consensus        50 avVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~   90 (175)
T COG4635          50 AVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT   90 (175)
T ss_pred             eEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence            999933  45555678899999999988  5899999997653

>TIGR02069 cyanophycinase cyanophycinase

Probab=93.60  E-value=0.19  Score=45.57  Aligned_cols=101  Identities=15%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             CEEEEEecCCCCccc-hHHHHHHHHhCCC-eEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            9 RSVLLLCGDYMEDYE-AMVPFQALLAFGV-SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         9 ~kI~ill~~g~~~~e-~~~~~~~l~~ag~-~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      .||+|+-.-..+..+ .....+.|++.|+ ++.++......                  ..     ..+...+-  ..+.
T Consensus        29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~------------------~a-----~~~~~~~~--l~~a   83 (250)
T TIGR02069        29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRERE------------------DA-----SDENAIAL--LSNA   83 (250)
T ss_pred             ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChH------------------Hc-----cCHHHHHH--HhhC
Confidence            588888764433333 3345567788887 46666543210                  00     00000111  2368


Q ss_pred             cEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           87 DGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        87 D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      |+|++.||.-..  .......+.+.|++.+++|.++++...|+.++...-
T Consensus        84 d~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~~  133 (250)
T TIGR02069        84 TGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDTM  133 (250)
T ss_pred             CEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccce
Confidence            999999997432  234667788999999999999999999999887653

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=93.58  E-value=0.062  Score=44.36  Aligned_cols=51  Identities=24%  Similarity=0.397  Sum_probs=41.2

Q ss_pred             CCCcCEEEEcCCCCh-hh-ccCChHHHHHHHHHHHcC-CcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAP-EY-LALNENVIALVKDFMEAK-KPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~-~~-~~~~~~l~~~l~~~~~~g-~~i~aiC~G~~~La~a  326 (392)
                      ..+.|++|||||... .. +.+...|.+-|.++..++ +++=+.|.|-.+|.+.
T Consensus        54 ~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q  107 (226)
T KOG3210|consen   54 LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ  107 (226)
T ss_pred             HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence            347899999999863 22 455566889999998888 8999999999888765

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=93.53  E-value=0.66  Score=45.33  Aligned_cols=43  Identities=33%  Similarity=0.458  Sum_probs=36.6

Q ss_pred             cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237          279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA  324 (392)
Q Consensus       279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La  324 (392)
                      +|.++||||+|.   +.-+--+..++.+.+++.|..+||.|-++..
T Consensus       344 ~dgIlVPGGFG~---RG~eGkI~Ai~yAREn~iP~lGIClGmQ~av  386 (533)
T COG0504         344 VDGILVPGGFGY---RGVEGKIAAIRYARENNIPFLGICLGMQLAV  386 (533)
T ss_pred             CCEEEeCCCCCc---CchHHHHHHHHHHHhcCCCEEEEchhHHHHH
Confidence            899999999995   3356677788888899999999999998654

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=93.42  E-value=0.29  Score=52.17  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             CCcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..||.|||.+|+|... ........+.|+++  .+.||.+||.|-++|+.+
T Consensus       130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~  178 (918)
T PLN02889        130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV  178 (918)
T ss_pred             cCCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence            4689999999998422 11222334555543  579999999999999987

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=93.24  E-value=0.36  Score=50.84  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhC----CCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~----~~~i~aic~G~~~La~a  133 (392)
                      ..||+|||.||.|...   +..-..+++++.+.    .+||.+||.|.++|+.+
T Consensus        52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            3799999999976432   22223445555543    49999999999999976

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=93.15  E-value=0.17  Score=44.84  Aligned_cols=50  Identities=28%  Similarity=0.475  Sum_probs=39.8

Q ss_pred             CCcCEEEEcCCCCh--hh-------------ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAP--EY-------------LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~--~~-------------~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +..|.|+++||...  ..             ..+|.--+.+||++.++++||.+||=|.++|.-+
T Consensus        59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa  123 (243)
T COG2071          59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA  123 (243)
T ss_pred             hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHH
Confidence            45799999999431  11             1356677889999999999999999999999865

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=93.02  E-value=0.42  Score=41.07  Aligned_cols=49  Identities=33%  Similarity=0.554  Sum_probs=38.8

Q ss_pred             CCCccEEEEcCCCC-cccccCC---HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           83 PSKYDGLVIPGGRA-PEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        83 ~~~~D~iiipGG~~-~~~~~~~---~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+.||+++|.|... +.  .+.   .+|.+++++.....+.|.+||-|-+++|++
T Consensus        57 l~ky~gfvIsGS~~dAf--~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   57 LEKYDGFVISGSKHDAF--SDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             hhhhceEEEeCCccccc--ccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            44799999999742 21  122   368889999888889999999999999986

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=93.01  E-value=0.18  Score=44.62  Aligned_cols=50  Identities=28%  Similarity=0.483  Sum_probs=38.2

Q ss_pred             CCccEEEEcCCCCcc--c-------------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~--~-------------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +..|.|+++||....  .             ..+|.--..+|+++.++++||.+||=|.++|.-+
T Consensus        59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa  123 (243)
T COG2071          59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA  123 (243)
T ss_pred             hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHH
Confidence            468999999994321  1             1133345789999999999999999999999754

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.84  E-value=0.053  Score=45.34  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCC
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALN  296 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~  296 (392)
                      ...+.|++.|++++.+......                          .....+.  ...+|+|++.||.-...  ..++
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~~--------------------------~~~~~~~--i~~ad~I~~~GG~~~~l~~~l~~   55 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDRN--------------------------DADILEA--IREADAIFLGGGDTFRLLRQLKE   55 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSCG--------------------------HHHHHHH--HHHSSEEEE--S-HHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeccCCC--------------------------hHHHHHH--HHhCCEEEECCCCHHHHHHHHHh
Confidence            4678899999998777654210                          0111111  13689999999875432  3456


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      ..+.+.|++.+++|+++++...|+.++...+
T Consensus        56 t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~~   86 (154)
T PF03575_consen   56 TGLDEAIREAYRKGGVIIGTSAGAMILGPSI   86 (154)
T ss_dssp             TTHHHHHHHHHHTTSEEEEETHHHHCTSSBS
T ss_pred             CCHHHHHHHHHHCCCEEEEEChHHhhccCce
Confidence            7799999999999999999999998865543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PLN02327 CTP synthase

Probab=92.78  E-value=0.17  Score=50.56  Aligned_cols=47  Identities=21%  Similarity=0.291  Sum_probs=36.6

Q ss_pred             CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      ..++|.|++|||.+...   ....+..++.+.++++|+.+||.|.++++-
T Consensus       360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~vi  406 (557)
T PLN02327        360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAVI  406 (557)
T ss_pred             hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence            34899999999986433   223456677778899999999999998864

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=92.58  E-value=0.48  Score=41.24  Aligned_cols=125  Identities=17%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             ecCCCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch---hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCC
Q 016237          175 TGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE---VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDF  251 (392)
Q Consensus       175 T~~g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e---~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~  251 (392)
                      -|+|..+..+........+........++|+++-+-+.....   ..-.+++|+..|.++.-++....+           
T Consensus         6 Ls~~~~~~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~-----------   74 (224)
T COG3340           6 LSSSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP-----------   74 (224)
T ss_pred             ecCCCcccchhhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC-----------
Confidence            344334444433333333332222235577777654433322   344778888889887777654221           


Q ss_pred             CCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          252 EGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       252 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                                      ...++. ...+.|+|+|.||....-  ..+...+.+.||+..++|.+.++..+|+.+-...+
T Consensus        75 ----------------~~~Ie~-~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          75 ----------------LAAIEN-KLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             ----------------HHHHHH-hhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence                            112222 223579999999875422  46678899999999999999999988877655554

>TIGR00337 PyrG CTP synthase

Probab=92.51  E-value=0.18  Score=50.16  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      ..+|.|++|||.+...   ....+..++.+.+++.|+.+||.|.++++-
T Consensus       342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i  387 (525)
T TIGR00337       342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVI  387 (525)
T ss_pred             cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence            3699999999987533   234456777788899999999999988864

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=92.43  E-value=0.24  Score=45.56  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             CCcCEEEEcCCC-Chhh---ccCChHHHHHHHHHHHcC--CcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGR-APEY---LALNENVIALVKDFMEAK--KPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~-~~~~---~~~~~~l~~~l~~~~~~g--~~i~aiC~G~~~La~a  326 (392)
                      ..+|.|++|||. ....   +.....+.++..+..++|  .||-++|.|.++|+.+
T Consensus        53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~  108 (273)
T cd01747          53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL  108 (273)
T ss_pred             hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence            468999999985 3321   222233444444444445  7999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=92.32  E-value=0.34  Score=51.69  Aligned_cols=88  Identities=20%  Similarity=0.259  Sum_probs=53.7

Q ss_pred             EEecCCCCccchHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCC-----CCCc
Q 016237           13 LLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID-----PSKY   86 (392)
Q Consensus        13 ill~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~   86 (392)
                      +|+-|.++-.-. .+++.|++. |.++.++..+.-                              +++++.     ...|
T Consensus        84 iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~------------------------------~~~~~~~~~~~~~~~  132 (918)
T PLN02889         84 TLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW------------------------------TWEEVYHYLYEEKAF  132 (918)
T ss_pred             EEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC------------------------------CHHHHHhhhhcccCC
Confidence            566677763322 256667666 777777665421                              122211     2368


Q ss_pred             cEEEEcCCCCccccc-CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           87 DGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        87 D~iiipGG~~~~~~~-~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |.|||.+|.|..... +-....++|++.  .+.||.+||.|-++|+.+
T Consensus       133 d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~  178 (918)
T PLN02889        133 DNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV  178 (918)
T ss_pred             CEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence            999999998733211 112234555543  479999999999999875

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=92.13  E-value=0.21  Score=45.96  Aligned_cols=50  Identities=16%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             CCccEEEEcCCC-CcccccCCHHHHHHHHHHH---hCC--CeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSG--KTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~-~~~~~~~~~~l~~~l~~~~---~~~--~~i~aic~G~~~La~a  133 (392)
                      ..+|.|++|||. .......-+....+++.+.   ++|  .||.++|.|..+|+.+
T Consensus        53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~  108 (273)
T cd01747          53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL  108 (273)
T ss_pred             hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence            378999999995 3321111223344444444   444  7999999999999863

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR02069 cyanophycinase cyanophycinase

Probab=92.08  E-value=0.46  Score=43.12  Aligned_cols=113  Identities=13%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCC-eEEEEcCCCCCCCCCCCcccCCCCCccccCCCC
Q 016237          185 FIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALEC-HVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG  262 (392)
Q Consensus       185 ~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~-~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g  262 (392)
                      ...++++...+..    .+|.++..-.....+ .....+.|++.|+ +++++......                   .  
T Consensus        16 i~~~~~~lag~~~----~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~-------------------~--   70 (250)
T TIGR02069        16 ILREFVSRAGGED----AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRERE-------------------D--   70 (250)
T ss_pred             HHHHHHHHhCCCC----ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChH-------------------H--
Confidence            4555555544432    467777653333223 3346678888887 46666543110                   0  


Q ss_pred             CcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          263 HNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       263 ~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                         ..+..+.+ .....|+|++.||.-...  ......+.+.|++.+++|.++++..+|+.++...
T Consensus        71 ---a~~~~~~~-~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~  132 (250)
T TIGR02069        71 ---ASDENAIA-LLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT  132 (250)
T ss_pred             ---ccCHHHHH-HHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence               00111111 123689999999875322  3467788899999999999999999999977644

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=91.98  E-value=0.3  Score=45.45  Aligned_cols=111  Identities=13%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             CCccEEEEe-CCCCCcchhHHHHHHHHhcC--CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC
Q 016237          200 SDKRILFLC-GDYMEDYEVAVPFQSLQALE--CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV  276 (392)
Q Consensus       200 ~~~~v~ill-~~~~~~~e~~~~~~~~~~~~--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~  276 (392)
                      +..+|+|+- .+.-..+|. .+...|....  ++++++.+..-+..               .+....--.....++++..
T Consensus        34 rpl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h~~~---------------~~~~~hl~~~y~~~~~i~~   97 (302)
T PRK05368         34 RPLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSHESK---------------NTPAEHLENFYCTFEDIKD   97 (302)
T ss_pred             CCccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCcCCC---------------CCCHHHHHHhccCHHHhcc
Confidence            356777764 455444443 3444444433  56777665432200               0011111122346777766


Q ss_pred             CCcCEEEEcCCCCh-hhccC---ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAP-EYLAL---NENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~-~~~~~---~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+||.+||.|..-. ..+..   =+++.+.++...++.+++.++|-|.++++.+
T Consensus        98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a  151 (302)
T PRK05368         98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH  151 (302)
T ss_pred             CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            79999999997632 11111   1224444444445689999999999999876

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=91.48  E-value=0.25  Score=42.35  Aligned_cols=52  Identities=33%  Similarity=0.498  Sum_probs=41.7

Q ss_pred             CCCCcCEEEEcCCCC--hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          275 DVSGYDALVVPGGRA--PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       275 ~~~~~D~viipgg~~--~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.+.||.++|.|...  ......-..|.+++++.....+.|.+||-|-+++|++
T Consensus        56 Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   56 DLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             hhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            456799999998642  1223445788889999888889999999999999988

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=91.43  E-value=0.35  Score=42.06  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      +-|+|+|.||.--.  .......+.+.|++..++|++.++...|+.+-...+
T Consensus        84 ~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          84 KADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             hccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence            47899998886321  234566789999999999999999999987666553

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=90.39  E-value=0.64  Score=48.83  Aligned_cols=47  Identities=34%  Similarity=0.586  Sum_probs=38.6

Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +||.+++..|+|...+  -+.+..-+++....++||.+||.|-++||.+
T Consensus       210 ~yDGlflSNGPGdPe~--~~~~v~~vr~lL~~~~PvfGIClGHQllA~A  256 (1435)
T KOG0370|consen  210 EYDGLFLSNGPGDPEL--CPLLVQNVRELLESNVPVFGICLGHQLLALA  256 (1435)
T ss_pred             ccceEEEeCCCCCchh--hHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence            7999999999984332  2466677777777789999999999999987

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=90.01  E-value=0.55  Score=45.90  Aligned_cols=43  Identities=23%  Similarity=0.419  Sum_probs=35.6

Q ss_pred             ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhh
Q 016237           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La  131 (392)
                      +|+|+||||+|.+-   -+--+.-++.+.+++.|..+||.|.++..
T Consensus       344 ~dgIlVPGGFG~RG---~eGkI~Ai~yAREn~iP~lGIClGmQ~av  386 (533)
T COG0504         344 VDGILVPGGFGYRG---VEGKIAAIRYARENNIPFLGICLGMQLAV  386 (533)
T ss_pred             CCEEEeCCCCCcCc---hHHHHHHHHHHHhcCCCEEEEchhHHHHH
Confidence            89999999998543   35566777888889999999999998664

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=89.64  E-value=0.58  Score=49.11  Aligned_cols=48  Identities=29%  Similarity=0.515  Sum_probs=39.2

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+||.||+..|.|-..  .-+.+.+-+++...+++||.+||.|-++||.+
T Consensus       209 ~~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A  256 (1435)
T KOG0370|consen  209 EEYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA  256 (1435)
T ss_pred             cccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence            3899999999987433  23667777788888789999999999999975

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.64  E-value=0.31  Score=43.23  Aligned_cols=49  Identities=31%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             CCccEEEEcCCC-Ccc--ccc-------------CCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           84 SKYDGLVIPGGR-APE--YLA-------------MNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        84 ~~~D~iiipGG~-~~~--~~~-------------~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      +..|.|++|||. ...  ...             ++.-=..+++.+.++++||.+||-|.++|.-
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv  121 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV  121 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence            368999999998 331  110             1111256667777789999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=87.23  E-value=0.9  Score=42.12  Aligned_cols=49  Identities=27%  Similarity=0.457  Sum_probs=37.6

Q ss_pred             CcCEEEEcCCC--Ch-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGR--AP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~--~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..|-+|+||-.  |+ ..........+-|++..++|||+++||.|.++|-..
T Consensus        39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~g   90 (541)
T KOG0623|consen   39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDG   90 (541)
T ss_pred             cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcc
Confidence            56889999932  32 112345677888999999999999999999988754

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.20  E-value=0.57  Score=41.59  Aligned_cols=49  Identities=31%  Similarity=0.558  Sum_probs=30.0

Q ss_pred             CcCEEEEcCCC-Ch--hhc-------------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGR-AP--EYL-------------ALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~-~~--~~~-------------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..|.|++|||. ..  ..+             .++.--..+++.+.++++||.+||-|.++|.-+
T Consensus        58 ~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~  122 (217)
T PF07722_consen   58 RIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA  122 (217)
T ss_dssp             CSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH
T ss_pred             hcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH
Confidence            57999999998 42  111             122333456667778899999999999999764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=86.47  E-value=3.8  Score=35.76  Aligned_cols=89  Identities=21%  Similarity=0.337  Sum_probs=60.0

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCC---CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      |+|+|.-.+|.....+-...+.|+..-   |.|+.+...-                          +..+. +.+    .
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~--------------------------Li~Ep-W~~----~   49 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQF--------------------------LIKEP-WEE----T   49 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeehe--------------------------eecCc-chh----c
Confidence            368888889999999999999888632   4555554331                          11222 333    3


Q ss_pred             ccEEEEcCCCCcccc-cCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237           86 YDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQL  128 (392)
Q Consensus        86 ~D~iiipGG~~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~  128 (392)
                      --++++|||...... .-++..-+.|..+.++|..-.+||.|..
T Consensus        50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y   93 (253)
T COG4285          50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGY   93 (253)
T ss_pred             eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence            468999999653321 1234455677778889999999999874

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=85.85  E-value=1.1  Score=41.46  Aligned_cols=77  Identities=23%  Similarity=0.279  Sum_probs=56.0

Q ss_pred             CccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCC--C-
Q 016237           20 EDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGR--A-   96 (392)
Q Consensus        20 ~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~--~-   96 (392)
                      ..-.+..+..+|+..||.+..+-..                                  .|+.  ..|-+|+||--  + 
T Consensus        10 ~agn~~si~nal~hlg~~i~~v~~P----------------------------------~DI~--~a~rLIfPGVGnfg~   53 (541)
T KOG0623|consen   10 GAGNVRSIRNALRHLGFSIKDVQTP----------------------------------GDIL--NADRLIFPGVGNFGP   53 (541)
T ss_pred             CCccHHHHHHHHHhcCceeeeccCc----------------------------------hhhc--cCceEeecCcccchH
Confidence            3345677778888888887665432                                  2222  56789999942  3 


Q ss_pred             cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           97 PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        97 ~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      +.+......+.+-|++...++||+.+||.|.+.|-.
T Consensus        54 ~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~   89 (541)
T KOG0623|consen   54 AMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD   89 (541)
T ss_pred             HHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence            233456678889999999999999999999998853

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=85.34  E-value=0.74  Score=39.25  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=40.2

Q ss_pred             ccccCCCCCCcCEEEEcCCCChhhccCC-----hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          269 ANFESVDVSGYDALVVPGGRAPEYLALN-----ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       269 ~~~~~~~~~~~D~viipgg~~~~~~~~~-----~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++++....||.+||.|..- +.++-.     +++.+.+....++...+..+|-|+++.+..
T Consensus        53 ~~~~~i~~~~yDGlIITGApv-e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~  114 (175)
T cd03131          53 ETFDDIRDAKFDGLIVTGAPV-EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYY  114 (175)
T ss_pred             cCHHHccccCCCEEEEeCCCc-ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            467777778999999999653 122222     245555555558889999999999986654

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=84.74  E-value=0.71  Score=39.35  Aligned_cols=55  Identities=22%  Similarity=0.434  Sum_probs=38.3

Q ss_pred             CcCCCCCCCccEEEEcCCCCcccccCC-----HHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           77 TFDEIDPSKYDGLVIPGGRAPEYLAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        77 ~~~~~~~~~~D~iiipGG~~~~~~~~~-----~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      ++++++...||++||.|..- +.+...     +++.+.+.-.-++...+..+|-|+++...
T Consensus        54 ~~~~i~~~~yDGlIITGApv-e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~  113 (175)
T cd03131          54 TFDDIRDAKFDGLIVTGAPV-EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY  113 (175)
T ss_pred             CHHHccccCCCEEEEeCCCc-ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            46666677899999999752 112222     25655555555788999999999987653

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=84.04  E-value=1.1  Score=27.62  Aligned_cols=18  Identities=17%  Similarity=0.056  Sum_probs=14.5

Q ss_pred             CCCcchhHHHHHHHHhcC
Q 016237          211 YMEDYEVAVPFQSLQALE  228 (392)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~  228 (392)
                      |+...|++.|+++|.++|
T Consensus        21 G~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen   21 GFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             -B-HHHHHHHHHHHHHTT
T ss_pred             eeccHHHhhHHHHHHHCc
Confidence            777789999999999876

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=83.98  E-value=2.1  Score=41.26  Aligned_cols=44  Identities=34%  Similarity=0.425  Sum_probs=35.1

Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA  324 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La  324 (392)
                      ..|.|+||||+|.+-   -+--+...+.+.+++.|..+||.|-++-.
T Consensus       363 ~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~Av  406 (585)
T KOG2387|consen  363 SADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLAV  406 (585)
T ss_pred             cCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHHH
Confidence            689999999998633   44556667777889999999999987643

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=83.38  E-value=5.9  Score=34.60  Aligned_cols=90  Identities=23%  Similarity=0.323  Sum_probs=59.3

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcC---CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALE---CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      ++|.|.-..|.+...+-..++.|+.--   |.+..+...                          .+. +..|++    .
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~--------------------------~Li-~EpW~~----~   49 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ--------------------------FLI-KEPWEE----T   49 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh--------------------------eee-cCcchh----c
Confidence            467777788999888888888887532   344444322                          111 222443    3


Q ss_pred             cCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHH
Q 016237          279 YDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQI  322 (392)
Q Consensus       279 ~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~  322 (392)
                      --++++|||..-.+ -.-++..-+-|..+..+|....+||+|..+
T Consensus        50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            47899999987433 223444556667777899999999999764

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=82.62  E-value=2.1  Score=41.23  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=34.6

Q ss_pred             CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhh
Q 016237           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (392)
Q Consensus        85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La  131 (392)
                      ..|.|+||||+|.+-   -.-.+.-.+.+.+++.|..+||-|.++-.
T Consensus       363 ~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~Av  406 (585)
T KOG2387|consen  363 SADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLAV  406 (585)
T ss_pred             cCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHHH
Confidence            589999999998653   24455666777788999999999997643

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=82.52  E-value=4.3  Score=35.63  Aligned_cols=60  Identities=23%  Similarity=0.391  Sum_probs=35.1

Q ss_pred             chHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 016237           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAM  102 (392)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~  102 (392)
                      ++...+..|.+.|+.+++++++.                                  +  .+.|.+||+|.-.     .-
T Consensus        31 ~~~~~y~al~~~gi~vDvv~~~~----------------------------------d--L~~Ykllv~P~~~-----~l   69 (207)
T PF08532_consen   31 QVRGWYRALRELGIPVDVVSPDD----------------------------------D--LSGYKLLVLPSLY-----IL   69 (207)
T ss_dssp             HHHHHHHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES--S-----C-
T ss_pred             HHHHHHHHHHHcCCceEEecCcC----------------------------------C--cccCcEEEEeeEE-----EE
Confidence            56778889999999999998752                                  1  2369999999842     34


Q ss_pred             CHHHHHHHHHHHhCCCeEEEE
Q 016237          103 NDSVIDLVRKFSNSGKTIASI  123 (392)
Q Consensus       103 ~~~l~~~l~~~~~~~~~i~ai  123 (392)
                      +++..+.|+++.++|..+..-
T Consensus        70 ~~~~~~~L~~yV~~GG~li~~   90 (207)
T PF08532_consen   70 SPEFAERLRAYVENGGTLILT   90 (207)
T ss_dssp             -HHH---HHHHHT-SS-EEE-
T ss_pred             ChHHHHHHHHHHHCCCEEEEE
Confidence            688888999999987765543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=82.16  E-value=9.4  Score=35.78  Aligned_cols=87  Identities=20%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             CCEEEEEecCCCCc--cchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            8 KRSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         8 ~~kI~ill~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      ++||+++.-++-..  ..+....+.|++.|+++.+.......                    .+...     ........
T Consensus         3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~--------------------~~~~~-----~~~~~~~~   57 (305)
T PRK02645          3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD--------------------NPYPV-----FLASASEL   57 (305)
T ss_pred             cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh--------------------ccccc-----hhhccccC
Confidence            56899998876432  23455667788899998776543210                    00000     01111236


Q ss_pred             ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch-hh
Q 016237           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQ  127 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~-G~  127 (392)
                      +|.+++.||.|+        +++.++.+...+.|+.+|-. |.
T Consensus        58 ~d~vi~~GGDGT--------~l~~~~~~~~~~~pv~gin~~G~   92 (305)
T PRK02645         58 IDLAIVLGGDGT--------VLAAARHLAPHDIPILSVNVGGH   92 (305)
T ss_pred             cCEEEEECCcHH--------HHHHHHHhccCCCCEEEEecCCc
Confidence            899999999764        33445555567999999997 54

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=81.94  E-value=5.8  Score=32.96  Aligned_cols=46  Identities=28%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             CCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHH--cCCcEEEEehHHH
Q 016237          274 VDVSGYDALVVPGGRAPEYLALNENVIALVKDFME--AKKPVASICHGQQ  321 (392)
Q Consensus       274 ~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~--~g~~i~aiC~G~~  321 (392)
                      .++.+||+|||..  ...+...++.+.+|+++.++  +.+|.+.+|.+..
T Consensus        43 ~~l~~ydavVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~   90 (175)
T COG4635          43 PALEDYDAVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT   90 (175)
T ss_pred             cChhhCceEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence            4567899999944  34445678999999999887  5899999998854

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=80.70  E-value=10  Score=32.41  Aligned_cols=42  Identities=19%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             CCCccEEEEcCCCCcccccCCHHHHHHHHHHHh--CCCeEEEEchh
Q 016237           83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG  126 (392)
Q Consensus        83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~--~~~~i~aic~G  126 (392)
                      ..+||.||+.++--..  ...+.+.+|+++...  ++|+++..|.|
T Consensus        44 l~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~   87 (177)
T PRK11104         44 LSDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN   87 (177)
T ss_pred             HHHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            3479999986643111  235788899887643  68899988877

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=80.50  E-value=10  Score=31.35  Aligned_cols=61  Identities=25%  Similarity=0.389  Sum_probs=46.3

Q ss_pred             cchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCccccc
Q 016237           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLA  101 (392)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~  101 (392)
                      .++...+..|.+.|+.+++++++..                                    ...|++||+|.-.     .
T Consensus        26 ~~~~~~~~~l~~~gi~~d~v~~~~~------------------------------------l~~y~~vi~P~~~-----~   64 (154)
T cd03143          26 DLALALYRALRELGIPVDVVPPDAD------------------------------------LSGYKLVVLPDLY-----L   64 (154)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCC------------------------------------cccCCEEEECchh-----c
Confidence            4778888999999999999875421                                    1279999999863     2


Q ss_pred             CCHHHHHHHHHHHhCCCeEEEE
Q 016237          102 MNDSVIDLVRKFSNSGKTIASI  123 (392)
Q Consensus       102 ~~~~l~~~l~~~~~~~~~i~ai  123 (392)
                      ..+...+.|+++.++|..+.+-
T Consensus        65 ~~~~~~~~l~~~v~~GG~li~~   86 (154)
T cd03143          65 LSDATAAALRAYVENGGTLVAG   86 (154)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEe
Confidence            3468888999999988865553

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=80.41  E-value=7.1  Score=41.21  Aligned_cols=97  Identities=15%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..||+|+--+|++  ........|..+||+..=++.+                              |..-.+...++|-
T Consensus      1058 ~PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmt------------------------------DlL~G~~~ld~fr 1105 (1320)
T KOG1907|consen 1058 APKVAILREEGVN--GDREMAAAFYAAGFETVDVTMT------------------------------DLLAGRHHLDDFR 1105 (1320)
T ss_pred             CCceEEeeccccc--cHHHHHHHHHHcCCceeeeeee------------------------------hhhcCceeHhHhc
Confidence            5678888877777  5555666677888775444332                              1111223456788


Q ss_pred             EEEEcCCCCh-hh----------ccCChHHHHHHHHHHHcCC-cEEEEehHHHHHHHcCCC
Q 016237          281 ALVVPGGRAP-EY----------LALNENVIALVKDFMEAKK-PVASICHGQQILAAAGVL  329 (392)
Q Consensus       281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~~~g~-~i~aiC~G~~~La~aglL  329 (392)
                      .|+.+||+.. +.          ...++.+..-..+|+.+.. .=.+||+|-++++.-|.+
T Consensus      1106 Glaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i 1166 (1320)
T KOG1907|consen 1106 GLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWI 1166 (1320)
T ss_pred             ceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhccc
Confidence            8999998742 21          3567888888888887655 667999999999999854

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=80.31  E-value=24  Score=32.28  Aligned_cols=110  Identities=17%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             CCEEEEEecCCCC---------ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCc
Q 016237            8 KRSVLLLCGDYME---------DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF   78 (392)
Q Consensus         8 ~~kI~ill~~g~~---------~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (392)
                      +++|+|+...|-.         ..........|++. |+|..+...                                 .
T Consensus       146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---------------------------------~  191 (271)
T PF09822_consen  146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---------------------------------N  191 (271)
T ss_pred             CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---------------------------------c
Confidence            4677777754333         34667777777776 776665543                                 2


Q ss_pred             CCCCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCC-eEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCe
Q 016237           79 DEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGAS  157 (392)
Q Consensus        79 ~~~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~-~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~  157 (392)
                      .++ ++++|+++|+|....    -.+.-...|.++..+|. .+..+.....-+..  ...... ...+...+.|..+|-.
T Consensus       192 ~~I-P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~--~~~~~~-~~~~~L~~lL~~~Gi~  263 (271)
T PF09822_consen  192 EEI-PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVELQG--LWAGGA-QRDSNLNDLLEEYGIR  263 (271)
T ss_pred             ccc-CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCccccccc--cccccc-ccccCHHHHHHHcCCE
Confidence            333 458999999885422    23555566666766655 45544443222111  111111 1166677778778754


Q ss_pred             EE
Q 016237          158 WI  159 (392)
Q Consensus       158 ~~  159 (392)
                      +.
T Consensus       264 ~~  265 (271)
T PF09822_consen  264 IN  265 (271)
T ss_pred             eC
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
3uk7_A	396	Crystal Structure Of Arabidopsis Thaliana Dj-1d Len		0.0
3uk7_A	396	Crystal Structure Of Arabidopsis Thaliana Dj-1d Len		4e-62
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		3e-25
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		5e-24
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		7e-23
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		7e-23
1oi4_A	193	Crystal Structure Of Yhbo From Escherichia Coli Len		4e-19
1oi4_A	193	Crystal Structure Of Yhbo From Escherichia Coli Len		4e-16
2vrn_A	190	The Structure Of The Stress Response Protein Dr1199		3e-16
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		8e-14
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		2e-11
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		5e-08
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		2e-05
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		3e-05
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		2e-05
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		4e-05
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		3e-04
3mgk_A	211	Crystal Structure Of Probable ProteaseAMIDASE FROM		3e-04
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		3e-04
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		4e-04
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		4e-04
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		4e-04
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		4e-04
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		6e-04

>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d Length = 396

Iteration: 1
 Score =  630 bits (1624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/389 (76%), Positives = 333/389 (85%)
Query: 4   SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT 63
           S    R+VL+LCGDY EDYE  VPFQAL AFG++V   CPGKK+GD CPTAVH   GHQT
Sbjct: 8   SXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQT 67
Query: 64  YSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123
           Y E+RGHNF LNATFDE+D SKYDGLVIPGGRAPEYLA+  SV++LV++FS SGK IASI
Sbjct: 68  YFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASI 127
Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP 183
            HGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYEGHP
Sbjct: 128 XHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHP 187
Query: 184 EFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDS 243
           EFI+LF+KALGG ITG++KRILFLCGDY EDYEV VPFQSLQAL C VDAVCP+KKAGD 
Sbjct: 188 EFIQLFVKALGGKITGANKRILFLCGDYXEDYEVKVPFQSLQALGCQVDAVCPEKKAGDR 247
Query: 244 CPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALV 303
           CPTA+HDFEGDQTYSEKPGH F LT NF+ +  S YDALV+PGGRAPEYLALNE+V+ +V
Sbjct: 248 CPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIV 307
Query: 304 KDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTD 363
           K+F  ++KPVASI HGQQILAAAGVLKG+KCTAYPAVKLNV+L G +WLEPDPIDRCFTD
Sbjct: 308 KEFXNSEKPVASIXHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTD 367
Query: 364 GNLVSGAAWPGHPEFISQLMALLGIQVLF 392
           GNLV+GAAWPGHPEF+SQL ALLGIQV F
Sbjct: 368 GNLVTGAAWPGHPEFVSQLXALLGIQVSF 396

>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d Length = 396

Iteration: 1
 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/200 (56%), Positives = 140/200 (70%)
Query: 191 KALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD 250
           + +G     + + +L LCGDY EDYEV VPFQ+LQA    V  VCP KKAGDSCPTAVHD
Sbjct: 2   QQMGRGSXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHD 61
Query: 251 FEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAK 310
           F G QTY E  GHNFTL A F+ VD+S YD LV+PGGRAPEYLAL  +V+ LVK+F  + 
Sbjct: 62  FCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSG 121
Query: 311 KPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
           KP+ASI HGQ ILAAA  + G+KCTAY  V  +++ AGA W+EP   D C  DG+L++ A
Sbjct: 122 KPIASIXHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAA 181
Query: 371 AWPGHPEFISQLMALLGIQV 390
            + GHPEFI   +  LG ++
Sbjct: 182 TYEGHPEFIQLFVKALGGKI 201

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 24/184 (13%)
Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            VL L  +  ED E + P+  L   G  V  A                S    T +   G
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHG 45
Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           ++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  I
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQI 105
Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT----YEGHPEF 185
           L +A V++GRK T+YP +K   I AG  W++ E     VVDGN ++       Y    EF
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDXINAGVEWVDAE----VVVDGNWVSSRVPADLYAWXREF 161
Query: 186 IRLF 189
           ++L 
Sbjct: 162 VKLL 165

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 20/166 (12%)
Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262
           ++LFL  +  ED E+  P+  L+  E H                 +  FE   T + K G
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKE-EGH--------------EVYIASFE-RGTITGKHG 45
Query: 263 HNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQI 322
           ++  +   F+ V+   +DALV+PGGRAPE + LNE  +++ +      KPVASICHG QI
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQI 105
Query: 323 LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 368
           L +AGVL+G+K T+YP +K + + AG  W++ + +     DGN VS
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDXINAGVEWVDAEVV----VDGNWVS 147

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSET 67
            VL L  D  ED E + P   +   G  V  A    GK +G                   
Sbjct: 4   KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 45
Query: 68  RGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
            G++  ++ TF+E+DP ++D LV+PGG+APE + +N+  + + R+     K +ASICHG 
Sbjct: 46  HGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105
Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHP 183
            IL +A V+KGR+ T+   ++  +I AGA WI+ E     VVDGN ++    G  Y    
Sbjct: 106 QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----VVVDGNWVSSRHPGDLYAWMR 161
Query: 184 EFIRLF 189
           EF++L 
Sbjct: 162 EFVKLL 167

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 203 RILFLCGDYMEDYEVAVPFQSL--QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEK 260
           ++LFL  D  ED E+  P   +  +  E +V +    K  G                  K
Sbjct: 4   KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 45
Query: 261 PGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320
            G++  +   FE VD   +DALV+PGG+APE + LNE  + + +   E  KPVASICHG 
Sbjct: 46  HGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105
Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS----GAAWPGHP 376
           QIL +A VLKG++ T+   ++ +V+ AGA W++ + +     DGN VS    G  +    
Sbjct: 106 QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVV----VDGNWVSSRHPGDLYAWMR 161
Query: 377 EFISQL 382
           EF+  L
Sbjct: 162 EFVKLL 167

>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli Length = 193

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 25/194 (12%)
Query: 6   GGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS 65
           G  + + +L  D  ED E   P             A   +K+G    T + +  G     
Sbjct: 21  GLSKKIAVLITDEFEDSEFTSP-------------ADEFRKAGHEVIT-IEKQAGKTVKG 66
Query: 66  ETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125
           +    +  ++ + DE+ P+++D L++PGG +P+YL  ++  +   R F NSGK + +ICH
Sbjct: 67  KKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICH 126
Query: 126 GQLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEG 181
           G  +L +ADV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T + 
Sbjct: 127 GPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDD 179
Query: 182 HPEFIRLFLKALGG 195
            P F R  L+ LG 
Sbjct: 180 LPAFNREALRLLGA 193

>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli Length = 193

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYS 258
           G  K+I  L  D  ED E   P    +     V  +  +K+AG             +T  
Sbjct: 21  GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEV--ITIEKQAG-------------KTVK 65
Query: 259 EKPGH-NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASIC 317
            K G  + T+  + + V  + +DAL++PGG +P+YL  +   +   +DF+ + KPV +IC
Sbjct: 66  GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAIC 125
Query: 318 HGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPE 377
           HG Q+L +A V++G+K TA   + ++V  AGA + + + +        LV+       P 
Sbjct: 126 HGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV---VDKDQLVTSRTPDDLPA 182
Query: 378 FISQLMALLG 387
           F  + + LLG
Sbjct: 183 FNREALRLLG 192

>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From Deinococcus Radiodurans: A Member Of The Dj-1 Superfamily Length = 190

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K+I  L  D +E+ E+  P  +++A     + +  +       P  +   +GD     +P
Sbjct: 10  KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLE-------PGEIQSMKGDI----EP 58
Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQ 320
              + +      V VS YD L++PGG   P+ L L E  +  V+D  +A KP+A+I HG 
Sbjct: 59  QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGP 118
Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFIS 380
             L+  G+ +G K T++ ++K  + LAGA W++    + C TD  +V+       P F  
Sbjct: 119 WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD----EECVTDKGVVTSRKPDDLPAFNK 174
Query: 381 QLM 383
           +++
Sbjct: 175 KIV 177

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 3   NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
           ++  GK+ V +L    +ED E ++P   L   G  V                V  S  ++
Sbjct: 5   HNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEV---------------VVLGSRXNE 49
Query: 63  TYSETRGH-NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121
            Y   RG  +   + T  E   S++D +VIPGG AP+    N + +  V++    GK +A
Sbjct: 50  KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLVA 109
Query: 122 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 175
           ++ HG  +L   D+++G++ T +  +      AGA +++     A VVDGN+IT
Sbjct: 110 AVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K++  L    +ED E  +P   L             K+AG      V     ++ Y  K 
Sbjct: 11  KKVAILIEQAVEDTEFIIPCNGL-------------KQAG--FEVVVLGSRXNEKYKGKR 55
Query: 262 GHNFTLTANFESVDV--SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319
           G   +  A+  + +   S +DA+V+PGG AP+    N N +  V++  E  K VA++ HG
Sbjct: 56  GR-LSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLVAAVXHG 114
Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFI 379
            Q+L    +L+GK+ T + A+  +   AGA +L+    +    DGNL++         F 
Sbjct: 115 PQVLIEGDLLRGKQATGFIAISKDXXNAGADYLD----EALVVDGNLITSREPGDLAIFT 170
Query: 380 SQLMALLG 387
           + +++ LG
Sbjct: 171 TAILSRLG 178

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 75  NATFDEIDPSKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILAA 132
           + +  ++   K+D +V+PGG      AM +S  V DL+R   + G  IA+IC    +LA 
Sbjct: 57  DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 133 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 180
             V  G+  T+YP +KP L+    S+++ +T+   V DGN+IT    G  YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
              L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              L A     D    D + +PGG     L  +   +A ++      + V S+C G  +L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
            AAG+L+GK+ T + A    +   GA  +     +R   DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
              L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              L A     D    D + +PGG     L  +   +A ++      + V S+C G  +L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
            AAG+L+GK+ T + A    +   GA  +     +R   DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 46  KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGG-RAPEYLAMND 104
           + G    TA   S G+   + +RG     +A   E+   +YD +V+PGG +  E    + 
Sbjct: 27  RGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST 86
Query: 105 SVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 148
            +++ V++F  SG+ +A+IC     +L   D+      T +P +K
Sbjct: 87  LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK 131

>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM Clostridium Acetobutylicum Atcc 824 Length = 211

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTA 336
           L VPGG        ++N I  + + ++  K + S+C G  +L+ AG+L GK+ T 
Sbjct: 69  LFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATT 123

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
              L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              L A     D    D + +PGG     L  +   +A ++      + V S+  G  +L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
            AAG+L+GK+ T + A    +   GA  +     +R   DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
              L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              L A     D    D + +PGG     L  +   +A ++      + V S+  G  +L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
            AAG+L+GK+ T + A    +   GA  +     +R   DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
              L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVL 110
Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 264 NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQIL 323
              L A     D    D + +PGG     L  +   +A ++      + V S+  G  +L
Sbjct: 51  GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVL 110
Query: 324 AAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSG 369
            AAG+L+GK+ T + A    +   GA  +     +R   DGNL++G
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVH----ERVVRDGNLLTG 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	0.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	2e-84
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	1e-72
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	1e-67
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	5e-70
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-69
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	2e-69
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	5e-68
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	2e-68
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	2e-67
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	1e-42
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	3e-38
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	3e-34
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	3e-30
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	5e-32
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	8e-28
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	7e-32
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	1e-26
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	1e-31
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	4e-30
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	2e-30
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	1e-27
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	4e-29
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	8e-26
2fex_A	188	Conserved hypothetical protein; structural genomic	7e-29
2fex_A	188	Conserved hypothetical protein; structural genomic	5e-28
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	2e-28
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	3e-26
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	3e-27
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	2e-25
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	1e-25
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	4e-23
1u9c_A	224	APC35852; structural genomics, protein structure i	2e-21
1u9c_A	224	APC35852; structural genomics, protein structure i	2e-18
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	8e-21
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	4e-18
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	1e-19
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	7e-17
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	1e-18
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	1e-16
3n7t_A	247	Macrophage binding protein; seattle structural gen	1e-15
3n7t_A	247	Macrophage binding protein; seattle structural gen	5e-13
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	2e-15
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	8e-14
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	7e-13
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	5e-12
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	4e-12
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-10
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-11
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	1e-08
3er6_A	209	Putative transcriptional regulator protein; struct	2e-08
3er6_A	209	Putative transcriptional regulator protein; struct	4e-08
3gra_A	202	Transcriptional regulator, ARAC family; transcript	4e-08
3gra_A	202	Transcriptional regulator, ARAC family; transcript	4e-07
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	2e-05
3m3p_A	250	Glutamine amido transferase; structural genomics,	1e-04
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	2e-04
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	5e-04

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  511 bits (1317), Expect = 0.0
 Identities = 302/392 (77%), Positives = 339/392 (86%), Gaps = 1/392 (0%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
             +    +  VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct: 6   RGSMANSRT-VLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 64

Query: 61  HQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           HQTY E+RGHNF LNATFDE+D SKYDGLVIPGGRAPEYLA+  SV++LV++FS SGK I
Sbjct: 65  HQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPI 124

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           ASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYE
Sbjct: 125 ASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYE 184

Query: 181 GHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKA 240
           GHPEFI+LF+KALGG ITG++KRILFLCGDYMEDYEV VPFQSLQAL C VDAVCP+KKA
Sbjct: 185 GHPEFIQLFVKALGGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKA 244

Query: 241 GDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVI 300
           GD CPTA+HDFEGDQTYSEKPGH F LT NF+ +  S YDALV+PGGRAPEYLALNE+V+
Sbjct: 245 GDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVL 304

Query: 301 ALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC 360
            +VK+FM ++KPVASICHGQQILAAAGVLKG+KCTAYPAVKLNV+L G +WLEPDPIDRC
Sbjct: 305 NIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRC 364

Query: 361 FTDGNLVSGAAWPGHPEFISQLMALLGIQVLF 392
           FTDGNLV+GAAWPGHPEF+SQLMALLGIQV F
Sbjct: 365 FTDGNLVTGAAWPGHPEFVSQLMALLGIQVSF 396

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  261 bits (670), Expect = 2e-84
 Identities = 115/199 (57%), Positives = 141/199 (70%)

Query: 191 KALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD 250
           + +G     + + +L LCGDYMEDYEV VPFQ+LQA    V  VCP KKAGDSCPTAVHD
Sbjct: 2   QQMGRGSMANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHD 61

Query: 251 FEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAK 310
           F G QTY E  GHNFTL A F+ VD+S YD LV+PGGRAPEYLAL  +V+ LVK+F  + 
Sbjct: 62  FCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSG 121

Query: 311 KPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
           KP+ASICHGQ ILAAA  + G+KCTAY  V  +++ AGA W+EP   D C  DG+L++ A
Sbjct: 122 KPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAA 181

Query: 371 AWPGHPEFISQLMALLGIQ 389
            + GHPEFI   +  LG +
Sbjct: 182 TYEGHPEFIQLFVKALGGK 200

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  224 bits (573), Expect = 1e-72
 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 23/209 (11%)

Query: 179 YEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKK 238
           +  H E   L+ KA      G  K+I  L  D  ED E   P    +     V  +  + 
Sbjct: 7   HHHHLESTSLYKKA------GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQA 60

Query: 239 KAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN 298
                         G     +K   + T+  + + V  + +DAL++PGG +P+YL  +  
Sbjct: 61  --------------GKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNR 106

Query: 299 VIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID 358
            +   +DF+ + KPV +ICHG Q+L +A V++G+K TA   + ++V  AGA + +    +
Sbjct: 107 FVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYD---QE 163

Query: 359 RCFTDGNLVSGAAWPGHPEFISQLMALLG 387
                  LV+       P F  + + LLG
Sbjct: 164 VVVDKDQLVTSRTPDDLPAFNREALRLLG 192

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  211 bits (539), Expect = 1e-67
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 19/186 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           + +L  D  ED E   P       G  V                     G     +    
Sbjct: 26  IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQA--------------GKTVKGKKGEA 71

Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
           +  ++ + DE+ P+++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L
Sbjct: 72  SVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLL 131

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLF 189
            +ADV++GRK TA  P+   +  AGA + + E     VVD + ++T  T +  P F R  
Sbjct: 132 ISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREA 187

Query: 190 LKALGG 195
           L+ LG 
Sbjct: 188 LRLLGA 193

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  216 bits (553), Expect = 5e-70
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 20/187 (10%)

Query: 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE 259
           +  ++LFL  D  ED E+  P   ++     V     ++                   + 
Sbjct: 1   ASMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG----------------KITG 44

Query: 260 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319
           K G++  +   FE VD   +DALV+PGG+APE + LNE  + + +   E  KPVASICHG
Sbjct: 45  KHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHG 104

Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFI 379
            QIL +A VLKG++ T+   ++ +V+ AGA W++         DGN VS         ++
Sbjct: 105 PQILISAKVLKGRRGTSTITIRDDVINAGAEWID----AEVVVDGNWVSSRHPGDLYAWM 160

Query: 380 SQLMALL 386
            + + LL
Sbjct: 161 REFVKLL 167

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  215 bits (550), Expect = 2e-69
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 21/187 (11%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
             + VL L  D  ED E + P   +   G  V  A   +                   + 
Sbjct: 2   SMK-VLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG----------------KITG 44

Query: 67  TRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
             G++  ++ TF+E+DP ++D LV+PGG+APE + +N+  + + R+     K +ASICHG
Sbjct: 45  KHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHG 104

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
             IL +A V+KGR+ T+   ++  +I AGA WI+    A  VVDGN ++         ++
Sbjct: 105 PQILISAKVLKGRRGTSTITIRDDVINAGAEWID----AEVVVDGNWVSSRHPGDLYAWM 160

Query: 187 RLFLKAL 193
           R F+K L
Sbjct: 161 REFVKLL 167

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  215 bits (551), Expect = 2e-69
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
            A    GK+ + +L  D +E+ E   P  A+ A G + +               +    G
Sbjct: 3   KAKDLTGKK-IAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-------EIQSMKG 54

Query: 61  HQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKT 119
                      + ++    E+  S YDGL++PGG   P+ L + +  +  VR   ++GK 
Sbjct: 55  DIEP----QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKP 110

Query: 120 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 179
           IA+ICHG   L+   + +G K T++  +K  L  AGA W++      CV D  ++T    
Sbjct: 111 IAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD----EECVTDKGVVTSRKP 166

Query: 180 EGHPEFIRLFLKALGGTITGSDKR 203
           +  P F +  ++        S ++
Sbjct: 167 DDLPAFNKKIVEEFAEGDHSSRRK 190

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  212 bits (542), Expect = 5e-68
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE 259
           + K+I  L  D +E+ E+  P  +++A     + +  +          +   +GD     
Sbjct: 8   TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGE-------IQSMKGDI---- 56

Query: 260 KPGHNFTLTANFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICH 318
           +P   + +      V VS YD L++PGG   P+ L L E  +  V+D  +A KP+A+ICH
Sbjct: 57  EPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICH 116

Query: 319 GQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEF 378
           G   L+  G+ +G K T++ ++K  + LAGA W++    + C TD  +V+       P F
Sbjct: 117 GPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD----EECVTDKGVVTSRKPDDLPAF 172

Query: 379 ISQLMALLG 387
             +++    
Sbjct: 173 NKKIVEEFA 181

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  219 bits (560), Expect = 2e-68
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 21/198 (10%)

Query: 3   NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
           N+ G K+ V +L    +ED E ++P   L   G  V                       +
Sbjct: 6   NNSGKKK-VAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN---------------E 49

Query: 63  TYSETRGH-NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121
            Y   RG  +   + T  E   S++D +VIPGG AP+ +  N + +  V++    GK +A
Sbjct: 50  KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVA 109

Query: 122 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181
           ++CHG  +L   D+++G++ T +  +   ++ AGA +++     A VVDGN+IT      
Sbjct: 110 AVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLD----EALVVDGNLITSREPGD 165

Query: 182 HPEFIRLFLKALGGTITG 199
              F    L  LG     
Sbjct: 166 LAIFTTAILSRLGYGGKD 183

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  216 bits (553), Expect = 2e-67
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 20/187 (10%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K++  L    +ED E  +P   L+     V  +                   ++ Y  K 
Sbjct: 11  KKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGS---------------RMNEKYKGKR 55

Query: 262 GH-NFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320
           G  +            S +DA+V+PGG AP+ +  N N +  V++ ME  K VA++CHG 
Sbjct: 56  GRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP 115

Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFIS 380
           Q+L    +L+GK+ T + A+  +++ AGA +L+    +    DGNL++         F +
Sbjct: 116 QVLIEGDLLRGKQATGFIAISKDMMNAGADYLD----EALVVDGNLITSREPGDLAIFTT 171

Query: 381 QLMALLG 387
            +++ LG
Sbjct: 172 AILSRLG 178

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  146 bits (370), Expect = 1e-42
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 30/195 (15%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
            K+ V +L  + +         +A    G+S                        +    
Sbjct: 2   AKK-VAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDT---------------KEIKT 45

Query: 67  TRGHNFALNATFDEI--DPSKYDGLVIPGGRAP------EYLAMNDSVIDLVRKFSNSGK 118
             G    ++     +     ++D LV   G A            N  ++++++ F   GK
Sbjct: 46  NSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGK 105

Query: 119 TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT 178
            +   C G ++     + KG+K   +P  KP +    A+           +DGN  T   
Sbjct: 106 MMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATD------EKSEIDGNFFTAQD 159

Query: 179 YEGHPEFIRLFLKAL 193
                  +   ++AL
Sbjct: 160 ENTIWTMLPKVIEAL 174

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  134 bits (340), Expect = 3e-38
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 29/193 (15%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K++  L  + +    +    ++                               +      
Sbjct: 3   KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAV---------------SDTKEIKTNS 47

Query: 262 GHNFTLTANFESV--DVSGYDALVVPGGRAP------EYLALNENVIALVKDFMEAKKPV 313
           G    +     ++      +DALV   G A            N +++ ++K F E  K +
Sbjct: 48  GMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMM 107

Query: 314 ASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWP 373
              C G  +    G+ KGKK   +P  K  +    A+       ++   DGN  +     
Sbjct: 108 IGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATD------EKSEIDGNFFTAQDEN 161

Query: 374 GHPEFISQLMALL 386
                + +++  L
Sbjct: 162 TIWTMLPKVIEAL 174

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  124 bits (314), Expect = 3e-34
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
            +S L++     E+ E ++    L   G+ V  A                  G +    +
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGL---------------NGGEAVKCS 49

Query: 68  RGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
           R      + +  ++   K+D +V+PGG      +  +  V DL+R   + G  IA+IC  
Sbjct: 50  RDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAA 109

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
             +LA   V  G+  T+YP +KP L+   +   +       V DGN+IT        EF 
Sbjct: 110 PTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDD----KTVVKDGNLITSRGPGTAYEFA 165

Query: 187 RLFLKALGG 195
               + L G
Sbjct: 166 LKIAEELAG 174

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  114 bits (287), Expect = 3e-30
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 26/190 (13%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K  L +     E+ E  +    L+     V                     G +      
Sbjct: 6   KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGL---------------NGGEAVKCS- 49

Query: 262 GHNFTLTA--NFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICH 318
             +  +    +   V    +D +V+PGG      +  +  V  L++        +A+IC 
Sbjct: 50  -RDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICA 108

Query: 319 GQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGH-PE 377
              +LA  GV  GK  T+YP++K  ++   +   +         DGNL++    PG   E
Sbjct: 109 APTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDD----KTVVKDGNLITSRG-PGTAYE 163

Query: 378 FISQLMALLG 387
           F  ++   L 
Sbjct: 164 FALKIAEELA 173

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score =  120 bits (301), Expect = 5e-32
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 20/193 (10%)

Query: 7   GKRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
              S ++L G    D  E  EA++    L    V+     P K    V      +S G  
Sbjct: 23  ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEV 82

Query: 63  TYSETRGHNFALNAT--FDEIDPSKYDGLVIPGGR------------APEYLAMNDSVID 108
                     A  +    ++I   ++D LVIPGG               E   +     +
Sbjct: 83  RNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKN 142

Query: 109 LVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167
            VR+F N+ K I ++C    ++ A    +   K T       ++   G   ++  T+ + 
Sbjct: 143 AVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSV 202

Query: 168 VV-DGNIITGATY 179
                 I + + Y
Sbjct: 203 KDDVNRIFSCSAY 215

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score =  108 bits (272), Expect = 8e-28
 Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 18/187 (9%)

Query: 204 ILFLCG--DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           IL  CG  D  E  E  +    L     +     P K           +  G+       
Sbjct: 29  ILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVE 88

Query: 262 GHNFTL--TANFESVDVSGYDALVVPGGR------------APEYLALNENVIALVKDFM 307
                     + E + V  +D LV+PGG               E   +       V++F 
Sbjct: 89  SARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFY 148

Query: 308 EAKKPVASICHGQQILAAA-GVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCF-TDGN 365
            AKKP+ ++C    ++ A    +   K T        +   G   ++   I         
Sbjct: 149 NAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNR 208

Query: 366 LVSGAAW 372
           + S +A+
Sbjct: 209 IFSCSAY 215

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  118 bits (299), Expect = 7e-32
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 22/172 (12%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
            KR +L+      E+ E ++    L+  G  V  A                         
Sbjct: 9   SKR-ILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAV---------------GDKLQVQG 52

Query: 67  TRGHNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICH 125
           +RG       T +      +D L +PGG    +  A + +++ L+  FS  GK +A+IC 
Sbjct: 53  SRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICA 112

Query: 126 G-QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
              L+ A      G + T +P     + +   S              +++T 
Sbjct: 113 TPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQR----VCYYATQHLLTS 160

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  105 bits (263), Expect = 1e-26
 Identities = 40/190 (21%), Positives = 65/190 (34%), Gaps = 27/190 (14%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           KRIL       E+ E  +   +L      V           +                  
Sbjct: 10  KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMA--------AV-------GDKLQVQGS- 53

Query: 262 GHNFTLTA--NFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICH 318
                LTA    E+     +DAL +PGG    +  A +  ++AL+  F +  K VA+IC 
Sbjct: 54  -RGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICA 112

Query: 319 GQQI-LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGH-P 376
              +  A      G + T +P    ++     S          +   +L++    PG   
Sbjct: 113 TPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQR----VCYYATQHLLTSQG-PGTAL 167

Query: 377 EFISQLMALL 386
           EF   ++ALL
Sbjct: 168 EFALAMIALL 177

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  118 bits (297), Expect = 1e-31
 Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 23/177 (12%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
            +   L   + M D+E       L                 D+ P  V       T    
Sbjct: 5   TKKAFLYVFNTMSDWEYGYLIAEL---------NSGRYFKKDLAPLKVI------TVGAN 49

Query: 68  RG-----HNFALNA--TFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           +          +    + DE      D L++PGG       ++  +++ + +    G  +
Sbjct: 50  KEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIV 108

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           A+IC     LA    +  RK T+       ++       +   +   V D N++T +
Sbjct: 109 AAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTAS 165

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  114 bits (287), Expect = 4e-30
 Identities = 29/194 (14%), Positives = 62/194 (31%), Gaps = 24/194 (12%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K+      + M D+E       L     +      K  A     T               
Sbjct: 6   KKAFLYVFNTMSDWEYGYLIAEL-----NSGRYFKKDLAPLKVITV----------GANK 50

Query: 262 G-----HNFTLTAN--FESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVA 314
                     +  +   +   +   D L++PGG       +++ ++  +   ++    VA
Sbjct: 51  EMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVA 109

Query: 315 SICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPG 374
           +IC     LA  G L  +K T+       ++       +   +    +D NLV+ +    
Sbjct: 110 AICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASG-IA 168

Query: 375 HPEFISQLMALLGI 388
             EF  +++  + +
Sbjct: 169 PLEFAMEVLKKIDV 182

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  114 bits (288), Expect = 2e-30
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
            KR  L++     E+ E ++P   +   G+ V  A                  G      
Sbjct: 3   SKR-ALVILAKGAEEMETVIPVDVMRRAGIKVTVAGL---------------AGKDPVQC 46

Query: 67  TRGHNFALNATFDEIDP-SKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASIC 124
           +R      +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+IC
Sbjct: 47  SRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATIC 106

Query: 125 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            G   L A ++  G K T +P  K  ++  G              DG I+T 
Sbjct: 107 AGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---RVEKDGLILTS 155

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  107 bits (269), Expect = 1e-27
 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 26/192 (13%)

Query: 200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE 259
           + KR L +     E+ E  +P   ++     V                     G      
Sbjct: 2   ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVA--------GL-------AGKDPVQC 46

Query: 260 KPGHNFTLTANF---ESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVAS 315
               +  +  +    ++     YD +V+PGG    + L+ +  V  ++K+    K  +A+
Sbjct: 47  S--RDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAT 104

Query: 316 ICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGH 375
           IC G   L A  +  G K T +P  K  ++  G      + ++    DG +++    PG 
Sbjct: 105 ICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVE---KDGLILTSRG-PGT 160

Query: 376 -PEFISQLMALL 386
             EF   ++  L
Sbjct: 161 SFEFALAIVEAL 172

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  111 bits (279), Expect = 4e-29
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 25/173 (14%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           V L   D  ++ E   P+       + +D             +        +    +R  
Sbjct: 7   VCLFVADGTDEIEFSAPWGIFKRAEIPID-------------SVYVGENKDRLVKMSRDV 53

Query: 71  NFALNATFDEIDPS-----KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNS-GKTIASI 123
               N ++ EI  +     +YD  +IPGG    + L+    V  +V++F     K I  I
Sbjct: 54  EMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMI 113

Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           C G  + A    +  ++ T +P V+  L   G  +++       V++ N+IT 
Sbjct: 114 CAG-TLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD----QPVVLEENLITS 161

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  102 bits (256), Expect = 8e-26
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 31/195 (15%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
            ++     D  ++ E + P                 K+A     +       D+      
Sbjct: 5   VKVCLFVADGTDEIEFSAP----------WGIF---KRAEIPIDSVYVGENKDRLVKMS- 50

Query: 262 GHNFTLTA-------NFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEA-KKP 312
             +  + A                YD  ++PGG    + L+    V  +VK+F +   K 
Sbjct: 51  -RDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKW 109

Query: 313 VASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAW 372
           +  IC G  + A    L  K+ T +P+V+  +   G  +L+         + NL++    
Sbjct: 110 IGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD----QPVVLEENLITSQG- 163

Query: 373 PGH-PEFISQLMALL 386
           PG    F  +L+  +
Sbjct: 164 PGTAMLFGLKLLEQV 178

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  110 bits (276), Expect = 7e-29
 Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 23/188 (12%)

Query: 11  VLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           + +       D+E  +   A     GV +  A P           V              
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-------PVTSM----------- 45

Query: 70  HNFALNA--TFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
               +    ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC   
Sbjct: 46  GGLKVTPDTSYDALDPVDIDALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAA 104

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
             L    V+     T           A             V DG ++T A       F  
Sbjct: 105 SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAV 163

Query: 188 LFLKALGG 195
             LK+LG 
Sbjct: 164 EILKSLGL 171

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  107 bits (270), Expect = 5e-28
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 29/193 (15%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSL-QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEK 260
            RI         D+E A+   +    L   +    P      S                 
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSM---------------- 45

Query: 261 PGHNFTLTA--NFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICH 318
                 +T   +++++D    DALV+PGG + E      ++  LVK F +  + VA IC 
Sbjct: 46  --GGLKVTPDTSYDALDPVDIDALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICA 102

Query: 319 GQQILAAAGVLKGKKCTAYPAVKL---NVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGH 375
               L   GVL     T                A + +     R  +DG +V+ AA    
Sbjct: 103 AASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRD---QPRAVSDGGVVT-AAGSAP 158

Query: 376 PEFISQLMALLGI 388
             F  +++  LG+
Sbjct: 159 VSFAVEILKSLGL 171

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  109 bits (275), Expect = 2e-28
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 23/171 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           S L+      E+ EA+     L+  G+ V  A                  G+   + +RG
Sbjct: 4   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASD-------------GNLAITCSRG 50

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG-Q 127
                +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC    
Sbjct: 51  VKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPA 110

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNI--ITG 176
            +L   D+      T +P +K  +      W++       V D  +  +T 
Sbjct: 111 TVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLD----KRVVWDARVKLLTS 155

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  103 bits (259), Expect = 3e-26
 Identities = 37/192 (19%), Positives = 58/192 (30%), Gaps = 29/192 (15%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
              L       E+ E       L      V          D                   
Sbjct: 3   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVA---SDGNLAITCS----------- 48

Query: 262 GHNFTLTA--NFESVDVSGYDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICH 318
                L A      V    YD +V+PGG    E    +  ++  VK F  + + VA+IC 
Sbjct: 49  -RGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICA 107

Query: 319 G-QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDG--NLVSGAAWPGH 375
               +L    +      T +P +K    +    WL+     R   D    L++    PG 
Sbjct: 108 APATVLVPHDIFPIGNMTGFPTLKDK--IPAEQWLD----KRVVWDARVKLLTSQG-PGT 160

Query: 376 -PEFISQLMALL 386
             +F  +++ LL
Sbjct: 161 AIDFGLKIIDLL 172

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  106 bits (266), Expect = 3e-27
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
           +  L L  D   D+E +    AL      SV                V            
Sbjct: 4   KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--------VSSI--------- 46

Query: 68  RGHNFALNA-TFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
               F  +      ++P+ ++ LV+ GG    +   N  ++  V+        IA+IC  
Sbjct: 47  --GGFKTSVDYIIGLEPANFNLLVMIGG--DSWSNDNKKLLHFVKTAFQKNIPIAAICGA 102

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGNIITGATYEGHP 183
              LA   ++     T                +S++E       V D N++T        
Sbjct: 103 VDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVE----KQAVRDKNLVTANGT-API 157

Query: 184 EFIRLFLKALGG 195
           EF  L L+ +  
Sbjct: 158 EFTNLILEMIDF 169

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  101 bits (254), Expect = 2e-25
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 31/192 (16%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSL-QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEK 260
           K+ LFL  D   D+E      +L Q  +  V  V                          
Sbjct: 4   KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSI----------------- 46

Query: 261 PGHNFTLTANFE-SVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHG 319
               F  + ++   ++ + ++ LV+ GG    +   N+ ++  VK   +   P+A+IC  
Sbjct: 47  --GGFKTSVDYIIGLEPANFNLLVMIGG--DSWSNDNKKLLHFVKTAFQKNIPIAAICGA 102

Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVL---LAGASWLEPDPIDRCFTDGNLVSGAAWPGHP 376
              LA  G+L     T                +S++E     +   D NLV+        
Sbjct: 103 VDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVE----KQAVRDKNLVTANG-TAPI 157

Query: 377 EFISQLMALLGI 388
           EF + ++ ++  
Sbjct: 158 EFTNLILEMIDF 169

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score =  102 bits (255), Expect = 1e-25
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 19/192 (9%)

Query: 7   GKRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
            K+  ++L G    D  E +EA++   A+   G       P K+  DV      ++    
Sbjct: 6   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 65

Query: 63  TYSETRGHNFALNAT--FDEIDPSKYDGLVIPGGRAP-----------EYLAMNDSVIDL 109
                              + D ++ D L++PGG                  ++  +  L
Sbjct: 66  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 125

Query: 110 VRKFSNSGKTIASICHGQLILAAADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACV 168
            +    +GK +  +C    +L        R           VL   GA  +        V
Sbjct: 126 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 185

Query: 169 -VDGNIITGATY 179
             D  I+T   Y
Sbjct: 186 DEDNKIVTTPAY 197

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 95.9 bits (238), Expect = 4e-23
 Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 20/191 (10%)

Query: 202 KRILFL---CG--DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT 256
           K+I  +   CG  D  E +E  +   ++           P K+  D       +   +  
Sbjct: 7   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETR 66

Query: 257 YSEKPGHNFTL--TANFESVDVSGYDALVVPGGRAP-----------EYLALNENVIALV 303
                    T          D +  DAL+VPGG                  ++  + AL 
Sbjct: 67  NVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALA 126

Query: 304 KDFMEAKKPVASICHGQQILAAAGVLKGK-KCTAYPAVKLNVLLAGASWLEPDPIDRCF- 361
           +   +A KP+  +C    +L        +            +   GA  +     D    
Sbjct: 127 QAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVD 186

Query: 362 TDGNLVSGAAW 372
            D  +V+  A+
Sbjct: 187 EDNKIVTTPAY 197

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 90.9 bits (226), Expect = 2e-21
 Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82
           E  VP+      G  V  A    + G+V       +    +++E         A   + D
Sbjct: 30  EFAVPYLVFQEKGYDVKVASI--QGGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKDD 86

Query: 83  PSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------V 135
              +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L  A       +
Sbjct: 87  AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPI 146

Query: 136 VKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGATY 179
           VKG+  T++                 ++  L   GA+++         V DGN+ITG   
Sbjct: 147 VKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNP 206

Query: 180 EGHPEFIRLFLKAL 193
           +         + AL
Sbjct: 207 QSSRSTAEKVVAAL 220

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 36/201 (17%)

Query: 202 KRILFLC--GDYMEDY--------EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDF 251
           KR+L +      + D         E AVP+   Q     V     +   G   P      
Sbjct: 6   KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQ---GGEVPLDPRSI 62

Query: 252 EGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAK 310
                   +       TA     D  G+DA+ +PGG    +    NE +  +++ F E  
Sbjct: 63  NEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDG 122

Query: 311 KPVASICHGQQILAAAG------VLKGKKCTAYP-----AVKLNVLL----------AGA 349
           + +A++CHG   L  A       ++KGK  T++       V L+V +           GA
Sbjct: 123 RIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGA 182

Query: 350 SWLEPDPI-DRCFTDGNLVSG 369
           +++      D    DGNL++G
Sbjct: 183 NFVRGGKWTDFSVRDGNLITG 203

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 90.5 bits (224), Expect = 8e-21
 Identities = 33/211 (15%), Positives = 62/211 (29%), Gaps = 30/211 (14%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAV-HQSTGHQTYSETRGHNFALNATFDEI 81
           E ++P   L A G   + A            A+ H+      + E     F       ++
Sbjct: 77  ETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADV 136

Query: 82  DP-----SKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD- 134
                  S+Y  + +PGG      L  +  V   ++    + + + S+CHG     A   
Sbjct: 137 VASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH 196

Query: 135 ---VVKGRKCTAYPP-------------------VKPVLIAAGASWIEPETMAACVVDGN 172
               + G    A+P                        L   G + I  +       D  
Sbjct: 197 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRK 256

Query: 173 IITGATYEGHPEFIRLFLKALGGTITGSDKR 203
           ++TG +        +L  + +     G +  
Sbjct: 257 LLTGDSPFAANALGKLAAQEMLAAYAGLEHH 287

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 83.1 bits (205), Expect = 4e-18
 Identities = 39/215 (18%), Positives = 63/215 (29%), Gaps = 44/215 (20%)

Query: 199 GSDKRILFLC--GDYMEDY------------EVAVPFQSLQALECHVDAVCPKKKAGDSC 244
               +IL +     Y+               E  +P   L A     +            
Sbjct: 46  RGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFE 105

Query: 245 PTAV-HDFEGDQTYSEKPGHNFTLTANFESVD-----VSGYDALVVPGGRAPEY-LALNE 297
             A+ H  E    + E+    F        V       S Y A+ VPGG      L  ++
Sbjct: 106 YWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQ 165

Query: 298 NVIALVKDFMEAKKPVASICHGQQILAAA----GVLKGKKCTAYP-----AVKLNVLL-- 346
           +V A ++  ++  + V S+CHG     A       L G    A+P            +  
Sbjct: 166 DVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPG 225

Query: 347 ------------AGASWLEPDPIDRCFTDGNLVSG 369
                        G + +  D   R   D  L++G
Sbjct: 226 HLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTG 260

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 76  ATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135
               E+     D ++I  G      A+ D       K   S + I SIC G  +L    +
Sbjct: 73  GHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDPSRQLIGSICAGSFVLHELGL 130

Query: 136 VKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           +KG+K T  P  K VL   G    +       V++GNI T  
Sbjct: 131 LKGKKLTTNPDAKAVLQGMGGDVQD----LPLVIEGNIATAG 168

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 263 HNFTLTANFESVDVSGYDALVVPGG-RAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
              T+  +    +V   D +++  G R       +EN ++ +K    +++ + SIC G  
Sbjct: 65  LGMTVKTDGHVSEVKEQDVVLITSGYRGIPAALQDENFMSALK-LDPSRQLIGSICAGSF 123

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGA 370
           +L   G+LKGKK T  P  K  +   G    +         +GN+ +  
Sbjct: 124 VLHELGLLKGKKLTTNPDAKAVLQGMGGDVQD----LPLVIEGNIATAG 168

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 83.5 bits (206), Expect = 1e-18
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 37/213 (17%)

Query: 16  GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQTYSETRGHN 71
           G ++   EA+ PF      G  VD      K G     +    ++        ++    N
Sbjct: 25  GVFVV--EALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82

Query: 72  FALNAT--FDEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQL 128
             L       E++   Y       G    +       + D+  +   +G  +A++CHG  
Sbjct: 83  KTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA 142

Query: 129 ILAAA-------DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPE 162
           I            +++G+  T +                     V+ V    GA ++ P 
Sbjct: 143 IFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPV 202

Query: 163 TMAAC--VVDGNIITGATYEGHPEFIRLFLKAL 193
                  + DG ++TG             + AL
Sbjct: 203 GPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 235

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 77.7 bits (191), Expect = 1e-16
 Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 51/219 (23%)

Query: 200 SDKRILFLC--------------GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCP 245
           + K++L                 G ++   E   PF + +     VD V    K G    
Sbjct: 2   APKKVLLALTSYNDVFYSDGAKTGVFVV--EALHPFNTFRKEGFEVDFVSETGKFGWDEH 59

Query: 246 TAVHDFEGDQT------YSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNEN 298
           +   DF   Q                      + V+   Y       G    +     ++
Sbjct: 60  SLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKD 119

Query: 299 VIALVKDFMEAKKPVASICHGQQILAAAG-------VLKGKKCTAYP-----AVKLNVLL 346
           +  +  +       VA++CHG  I            +++GK  T +       + ++ +L
Sbjct: 120 LQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSIL 179

Query: 347 --------------AGASWLEPDPIDRCF--TDGNLVSG 369
                          GA +L P      +  TDG LV+G
Sbjct: 180 KAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTG 218

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 75.1 bits (184), Expect = 1e-15
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 35/210 (16%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQTYSETRGHNFALNAT- 77
           EA+ PF  L A G  VD A      G     +    + +      +SE       +N   
Sbjct: 36  EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQV 95

Query: 78  --FDEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134
               ++ P  Y  + + GG    Y       + ++ +     G  I ++CHG  +L    
Sbjct: 96  FKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIH 155

Query: 135 ------VVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAA--C 167
                 V+K +  T +                     +  +   A A ++ PE      C
Sbjct: 156 DENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFC 215

Query: 168 VVDGNIITGATYEGHPEFIRLFLKALGGTI 197
            VDG I+TGA  +      R  +K   G +
Sbjct: 216 KVDGRIVTGANPQSATNTARDTIKVYEGIV 245

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 67.4 bits (164), Expect = 5e-13
 Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 50/218 (22%)

Query: 200 SDKRILFLC-------------GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPT 246
             K +L +              G +    E   PF  L A    VD        G    +
Sbjct: 9   PRKALLAITSAHPPFWPDGKRTGLFFS--EALHPFNELTAAGFEVDVASETGTFGWDEHS 66

Query: 247 AVHDFEGDQT-------YSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNEN 298
              ++   +        ++               +    Y  + V GG    Y     ++
Sbjct: 67  LTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKH 126

Query: 299 VIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAYP-----AVKLNVLL- 346
           +  + +D  +    + ++CHG  +L          V+K K  T +       +K+   + 
Sbjct: 127 LQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMR 186

Query: 347 -------------AGASWLEPDPIDRCF--TDGNLVSG 369
                        A A ++ P+     F   DG +V+G
Sbjct: 187 EDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTG 224

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 41/209 (19%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCP---------TAVHQSTGHQTYSETRGHNFA 73
           E +  F      G  VD       +G                      +T +       A
Sbjct: 30  EILRSFDTFEKHGFEVDFVSE---TGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALA 86

Query: 74  LNATFDEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132
              T +E++ S Y       G    +      ++ D+  K   +G  IA+ICHG L+   
Sbjct: 87  RIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDG 146

Query: 133 A-------DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAA 166
                    +++G+  T +P                    V+ V    GA ++ P     
Sbjct: 147 LIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWD 206

Query: 167 C--VVDGNIITGATYEGHPEFIRLFLKAL 193
              + DG ++TG             + AL
Sbjct: 207 DYSITDGKLVTGVNANSSYSTTIRAINAL 235

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 69.7 bits (170), Expect = 8e-14
 Identities = 39/217 (17%), Positives = 65/217 (29%), Gaps = 47/217 (21%)

Query: 200 SDKRILFLCGDYMEDY------------EVAVPFQSLQALECHVDAVCPKKKAGDSCPTA 247
           + KR L     Y   +            E+   F + +     VD V      G      
Sbjct: 2   TPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYL 61

Query: 248 VHDFEGDQ------TYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNENVI 300
              F G +      T +               V+ S Y       G    +     +N+ 
Sbjct: 62  PKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQ 121

Query: 301 ALVKDFMEAKKPVASICHGQQILAAA-------GVLKGKKCTAYP-----AVKLNVLL-- 346
            +          +A+ICHG  +            +++GK  T +P     A+ ++ +L  
Sbjct: 122 DIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRS 181

Query: 347 ------------AGASWLEPDPIDRCF--TDGNLVSG 369
                        GA +L P      +  TDG LV+G
Sbjct: 182 RKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTG 218

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 66.4 bits (163), Expect = 7e-13
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 62  QTYSETRG-----HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS 116
              S   G         +  +    D +    L +PGG        +D+ I+ +      
Sbjct: 37  NFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTREKVNDDNFINFIGNMVKE 96

Query: 117 GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            K I S+C G  +L+ A ++ G++ T        +       +     A  V DGNI T 
Sbjct: 97  SKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNED-VLWVKEARWVKDGNIYTS 155

Query: 177 A 177
           +
Sbjct: 156 S 156

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 30/133 (22%)

Query: 255 QTYSEKPG-----HNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEA 309
              S   G         +  +  + D +    L VPGG        ++N I  + + ++ 
Sbjct: 37  NFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTREKVNDDNFINFIGNMVKE 96

Query: 310 KKPVASICHGQQILAAAGVLKGKKCT-----------AYPAVKLNVLLAGASWLEPDPID 358
            K + S+C G  +L+ AG+L GK+ T               V              +   
Sbjct: 97  SKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVL----------WVKEAR- 145

Query: 359 RCFT-DGNLVSGA 370
             +  DGN+ + +
Sbjct: 146 --WVKDGNIYTSS 156

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 72  FALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111

Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           AA +++G++ T +     +L   GA  I        V DGN++TG 
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGA--IPVH--ERVVRDGNLLTGG 153

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 265 FTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA 324
             L A     D    D + +PGG     L  +   +A ++      + V S+  G  +L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111

Query: 325 AAGVLKGKKCTAYPAVKLNVLLAGASWLEP----DPIDRCFTDGNLVSGA 370
           AAG+L+GK+ T + A            L P       +R   DGNL++G 
Sbjct: 112 AAGLLQGKRATTHWAY--------HELLAPLGAIPVHERVVRDGNLLTGG 153

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 76  ATFDEIDPSKYDGLVIPGGRAPEYLAMND-SVIDLVRKFSNSGKTIASICHGQLILAAAD 134
           ATF    P     L  PGG      A +D   +  +       K I S+C G LIL AA 
Sbjct: 76  ATFGTC-PRDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAG 134

Query: 135 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           ++KG K T++   +  L   GA  I  E  A  V D N ITGA
Sbjct: 135 LLKGYKATSHWSCRDALAGFGA--IPTE--ARVVRDRNRITGA 173

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 27/104 (25%)

Query: 279 YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCT-- 335
              L  PGG       A +   +A + D     K + S+C G  IL AAG+LKG K T  
Sbjct: 85  LTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSH 144

Query: 336 --------AYPAVKLNVLLAGASWLEPDPIDRCFT-DGNLVSGA 370
                    + A+              +        D N ++GA
Sbjct: 145 WSCRDALAGFGAI------------PTEAR---VVRDRNRITGA 173

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 27/120 (22%)

Query: 265 FTLTANFESVDVSGYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQI 322
            ++    +       + L++     P      ++  +   +++       + +I  G  +
Sbjct: 61  ISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFV 120

Query: 323 LAAAGVLKGKKCT-----------AYPAVKLNVLLAGASWLEPDPIDRCFT-DGNLVSGA 370
           +A AG+L+  K              +P +           L  +        DGN+   +
Sbjct: 121 VAKAGLLQQNKAVMHSYFAHLFGELFPEIM----------LMTEQK---ALIDGNVYLSS 167

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 72  FALNATFDEIDPSKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
            ++  T         + L+I     P      ++ ++ D +R+    G  I +I  G  +
Sbjct: 61  ISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFV 120

Query: 130 LAAADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           +A A +++  K              +P +           +  E     ++DGN+   +
Sbjct: 121 VAKAGLLQQNKAVMHSYFAHLFGELFPEIM----------LMTEQK--ALIDGNVYLSS 167

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 82  DPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 141
              + D LV+ GG           +  L+   +  G  +  + +G   L  A V+    C
Sbjct: 68  ALKELDLLVVCGGLRTP--LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGC 125

Query: 142 T-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           +             P  +          I P +     +D + ++ A
Sbjct: 126 SIHPEQRASLSERSPQTR----------ITPASF---TLDRDRLSAA 159

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 275 DVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKC 334
            +   D LVV GG           +  L+ D       +  + +G   L  AGVL    C
Sbjct: 68  ALKELDLLVVCGGLRTP--LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGC 125

Query: 335 T-----------AYPAVKL 342
           +             P  ++
Sbjct: 126 SIHPEQRASLSERSPQTRI 144

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} Length = 213

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 275 DVSGYDALVVPGG-------RAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG 327
            +  Y+ +++PGG       R    +A  E +   +    E  K +  IC+G QIL   G
Sbjct: 38  KLDDYELIILPGGFSYGDYLRPGA-VAAREKIAFEIAKAAERGKLIMGICNGFQILIEMG 96

Query: 328 VLKG 331
           +LKG
Sbjct: 97  LLKG 100

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 275 DVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
           ++     L + GG       L     ++AL++D +  + PV   C G Q+LA A
Sbjct: 45  EIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA 98

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 275 DVSGYDALVVPGGRA----PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA 326
            +  Y  +V+ GG       E     +    L+++ ++ + P   IC G Q+LA  
Sbjct: 54  PLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV 109

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 275 DVSGYDALVVPGGRA------PEYLALN-ENVIALVKDFMEAKKPVASICHGQQILAAAG 327
           D+  +D L++ GG         E+   + +  + L++   +++K +  +C G Q++  A 
Sbjct: 42  DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA- 100

Query: 328 VLKGK 332
                
Sbjct: 101 -YGAD 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
1u9c_A	224	APC35852; structural genomics, protein structure i	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	99.98
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.98
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.98
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	99.97
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.97
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.97
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	99.97
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.97
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.97
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.97
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.97
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.97
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.97
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.97
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.97
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.97
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.97
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.96
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.96
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.95
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.95
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.95
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.85
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.82
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.77
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.69
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.61
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.56
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.51
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.44
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.06
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.01
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.42
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.4
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.4
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.36
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.3
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.28
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.25
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.22
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.2
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.13
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	98.13
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.09
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	98.05
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	98.04
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	97.99
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.95
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	97.94
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	97.93
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.91
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.86
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.85
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.84
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.78
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.7
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.58
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.55
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.55
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.53
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.48
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.44
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.41
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.41
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.4
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.4
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.32
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.29
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.24
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.17
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.15
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.14
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.06
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	97.03
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.02
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	97.0
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	96.81
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.79
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	96.72
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.7
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	96.67
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	96.56
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.48
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	96.45
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.43
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	96.34
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.28
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.26
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	96.23
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	96.22
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	96.21
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	96.11
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.09
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.92
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	95.57
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	95.49
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.47
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	95.4
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	95.35
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	95.28
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	95.12
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	94.83
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	94.8
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	94.73
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	94.23
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	94.13
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	93.95
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	93.4
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	92.59
2zuv_A	759	Lacto-N-biose phosphorylase; beta-alpha-barrel, TI	83.07
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	82.53
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	81.47

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=9e-71  Score=533.96  Aligned_cols=385  Identities=79%  Similarity=1.346  Sum_probs=345.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +|||+|+++|||+..|+..|+++|+++|++++++|++++|.++...+..+..+.+.+.++.|..+.++.+++++++.+||
T Consensus        12 ~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   91 (396)
T 3uk7_A           12 SRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYD   91 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred             CCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCC
Confidence            57999999999999999999999999999999999987665443333333333345778889999999999999888999


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~  167 (392)
                      +|+||||.++..+..++.+++||+++++++++|+++|+|+++|+++|||+||++|+||...+.|++.|+.|++.+.+..+
T Consensus        92 ~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~  171 (396)
T 3uk7_A           92 GLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVC  171 (396)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCE
T ss_pred             EEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcce
Confidence            99999998876678899999999999999999999999999999999999999999999999999988899887655558


Q ss_pred             eecCceEecCCCCChHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCc
Q 016237          168 VVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTA  247 (392)
Q Consensus       168 v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~  247 (392)
                      |.|||+|||+|+.++.+|++++++.+.++...++++++++++++++..|+..++++|+++||+++++|+++++.+..+.+
T Consensus       172 v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~  251 (396)
T 3uk7_A          172 VVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTA  251 (396)
T ss_dssp             EEETTEEEESSGGGHHHHHHHHHHHTTCEEECCCCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEE
T ss_pred             EecCCEEEecCcccHHHHHHHHHHHHhccchhccceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccc
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999875554444


Q ss_pred             ccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          248 VHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       248 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      +.++.+...++++.|..+.++..+++.+..+||+|+||||.+++.+..++.+.+||+++++++|+|+++|+|+++|+++|
T Consensus       252 ~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aG  331 (396)
T 3uk7_A          252 IHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAG  331 (396)
T ss_dssp             EEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTT
T ss_pred             cccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcC
Confidence            44444555667788999999999999887899999999999877788899999999999999999999999999999999


Q ss_pred             CCCCceeecCchhHHHHHHcCCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhcccccC
Q 016237          328 VLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVLF  392 (392)
Q Consensus       328 lL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~~~  392 (392)
                      ||+||++|+||...+.+++++++|++++++.++|.|||+|||+|+.++.||++++|++|.+++.|
T Consensus       332 lL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~~~~d~~l~li~~l~~~~~~  396 (396)
T 3uk7_A          332 VLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALLGIQVSF  396 (396)
T ss_dssp             TTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSGGGHHHHHHHHHHHHTCEEEC
T ss_pred             CcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCchhHHHHHHHHHHHhcccccC
Confidence            99999999999999999999999987643223899999999999999999999999999999887

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=3.6e-39  Score=275.58  Aligned_cols=173  Identities=19%  Similarity=0.241  Sum_probs=160.3

Q ss_pred             CCCCCCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCC
Q 016237            3 NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID   82 (392)
Q Consensus         3 ~m~~~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (392)
                      +|.+.+++|+|++.+||++.|+..|+++|+++|++|+++|++++                .++++.|.++.+|..+++++
T Consensus         3 ~m~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~----------------~v~~~~G~~v~~d~~l~~v~   66 (177)
T 4hcj_A            3 AMGKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG----------------TAQGKLGGMTNIDLLFSEVD   66 (177)
T ss_dssp             --CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEEETTSCEEEECEEGGGCC
T ss_pred             ccccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEeeCCCCEEecCccHHHCC
Confidence            45543466778888999999999999999999999999999887                58899999999999999999


Q ss_pred             CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCC
Q 016237           83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE  162 (392)
Q Consensus        83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~  162 (392)
                      +.+||+|+||||+++..+..++.+++||+++++++|+|++||+|+++|+++|||+||++|+||..++.+++.++.|.+.+
T Consensus        67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~  146 (177)
T 4hcj_A           67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSEN  146 (177)
T ss_dssp             GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSS
T ss_pred             HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCC
Confidence            99999999999999888899999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CcceeeecCceEecCCCCChHHHHHHHHHHhcC
Q 016237          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (392)
Q Consensus       163 ~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~  195 (392)
                          +|+|||+|||+|+.++.+|++++++.|..
T Consensus       147 ----vV~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          147 ----VVVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             ----EEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             ----EEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence                89999999999999999999999998864

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=1.5e-37  Score=265.56  Aligned_cols=168  Identities=21%  Similarity=0.242  Sum_probs=158.8

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++++|++.++|++.|+..|+++|+++||+|+++|+++++                ++++.|..+.+|..++++++.+||
T Consensus         8 ~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~----------------v~~~~G~~v~~d~~l~~v~~~~yD   71 (177)
T 4hcj_A            8 NNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGT----------------AQGKLGGMTNIDLLFSEVDAVEFD   71 (177)
T ss_dssp             CEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEE----------------EEETTSCEEEECEEGGGCCGGGCS
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCe----------------EeeCCCCEEecCccHHHCCHhHCC
Confidence            4567788899999999999999999999999999998775                788899999999999999999999


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceE
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC  360 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~v  360 (392)
                      +|+||||+++..+..++.+.+||+++++++|+|++||+|+++|+++|||+||++|+||..++++++++++|.+..    +
T Consensus        72 ~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~----v  147 (177)
T 4hcj_A           72 AVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSEN----V  147 (177)
T ss_dssp             EEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSS----E
T ss_pred             EEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCC----E
Confidence            999999999888999999999999999999999999999999999999999999999999999999999998765    8


Q ss_pred             EEcCCeEEccCCCChHHHHHHHHHHhcc
Q 016237          361 FTDGNLVSGAAWPGHPEFISQLMALLGI  388 (392)
Q Consensus       361 v~dg~lvT~~g~~~~~~~~~~li~~l~~  388 (392)
                      |.|||+|||+|+.++.+|++++++.|..
T Consensus       148 V~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          148 VVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             EEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             EEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999864

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=1.4e-36  Score=259.19  Aligned_cols=166  Identities=36%  Similarity=0.621  Sum_probs=154.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +|||+|+++|||+..|+..|+++|+++||+++++|++++                ++.++.|.++.++.+++++++.+||
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D   65 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG----------------KITGKHGYSVNVDLTFEEVDPDEFD   65 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCS
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC----------------EEecCCCcEEeccCChhHCCHhhCC
Confidence            579999999999999999999999999999999999876                5888999999999999998877899


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~  167 (392)
                      +|+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.|++.+..+++..    +
T Consensus        66 ~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~----~  141 (168)
T 3l18_A           66 ALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----V  141 (168)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS----C
T ss_pred             EEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCC----E
Confidence            999999987766778999999999999999999999999999999999999999999999999999777775433    8


Q ss_pred             eecCceEecCCCCChHHHHHHHHHHh
Q 016237          168 VVDGNIITGATYEGHPEFIRLFLKAL  193 (392)
Q Consensus       168 v~dg~iiT~~g~~s~~~~~~~~i~~l  193 (392)
                      |.|||+|||+|+.++.+|++++++.|
T Consensus       142 v~dg~iiT~~g~~~~~d~~l~li~~l  167 (168)
T 3l18_A          142 VVDGNWVSSRHPGDLYAWMREFVKLL  167 (168)
T ss_dssp             EEETTEEEECSGGGHHHHHHHHGGGC
T ss_pred             EEeCCEEEcCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999876

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=6.3e-36  Score=263.70  Aligned_cols=177  Identities=15%  Similarity=0.161  Sum_probs=155.3

Q ss_pred             CCCCCCCCCEEEEEecCCCCccchHHHHHHHHhCC-------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccc
Q 016237            1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA   73 (392)
Q Consensus         1 m~~m~~~~~kI~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   73 (392)
                      |+.|+++++||+|+++|||+..|+..|+++|+.+|       |+++++|++++                ++.++.|+++.
T Consensus         1 m~~~~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~v~   64 (209)
T 3er6_A            1 MSLTNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR----------------PLIGRGGISVQ   64 (209)
T ss_dssp             ------CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS----------------CEEETTTEEEE
T ss_pred             CCCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC----------------ceecCCCeEEe
Confidence            66677678999999999999999999999999875       99999999876                58889999999


Q ss_pred             cCcCcCCCCCCCccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHH
Q 016237           74 LNATFDEIDPSKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVL  151 (392)
Q Consensus        74 ~~~~~~~~~~~~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l  151 (392)
                      +|..+++++  +||+||||||.++..  +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|
T Consensus        65 ~d~~~~~~~--~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l  142 (209)
T 3er6_A           65 PTAQWQSFD--FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLF  142 (209)
T ss_dssp             CSSCGGGCS--CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHH
T ss_pred             CCcCccccC--CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHH
Confidence            999999864  899999999987644  3679999999999999999999999999999999999999999999999999


Q ss_pred             HH-CCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          152 IA-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       152 ~~-~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      ++ +|...+..+.  .+|+|||+|||+|+.+++||++++++++.++.
T Consensus       143 ~~~~p~~~~~~~~--~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~~  187 (209)
T 3er6_A          143 GELFPEIMLMTEQ--KALIDGNVYLSSGPYSHSSVMLEIVEEYFGKH  187 (209)
T ss_dssp             HHHCTTSEECTTC--SEEEETTEEEECCSSCCHHHHHHHHHHHHCHH
T ss_pred             HHHCCCcEEecCC--EEEEeCCEEECCcHHHHHHHHHHHHHHHhCHH
Confidence            87 7776554432  38999999999999999999999999988875

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=8.1e-36  Score=261.58  Aligned_cols=169  Identities=15%  Similarity=0.206  Sum_probs=154.3

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCC------CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCC
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFG------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE   80 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (392)
                      .++||+|+++|||+..|+..|+++|+.+|      |+++++|++++                ++.++.|+++.++ ++++
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d-~l~~   66 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD----------------RVLSDLGLELVAT-ELSA   66 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS----------------EEEBTTSCEEECE-ECCS
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC----------------ceEcCCCCEEECC-Cccc
Confidence            36899999999999999999999999987      99999999876                6889999999999 9998


Q ss_pred             CCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEE
Q 016237           81 IDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI  159 (392)
Q Consensus        81 ~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~  159 (392)
                      ++..+||+||||||.+.... . +.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ +|...+
T Consensus        67 ~~~~~~D~livpGG~~~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~  144 (202)
T 3gra_A           67 AALKELDLLVVCGGLRTPLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRI  144 (202)
T ss_dssp             GGGTTCSEEEEECCTTCCSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEE
T ss_pred             ccCCCCCEEEEeCCCchhhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEe
Confidence            76779999999999876543 4 89999999999999999999999999999999999999999999999987 777766


Q ss_pred             cCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       160 ~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      ..+.   +|.|||+|||+|+.+++||++++++++.++.
T Consensus       145 ~~~~---~v~dg~iiTs~G~~a~~dlal~li~~~~G~~  179 (202)
T 3gra_A          145 TPAS---FTLDRDRLSAASPNGAMELMLGLVRRLYGDG  179 (202)
T ss_dssp             CSSS---EEEETTEEEESSHHHHHHHHHHHHHHHHCHH
T ss_pred             cCCe---EEEeCCEEECCCHHHHHHHHHHHHHHHhCHH
Confidence            5554   9999999999999999999999999988875

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=3.7e-35  Score=255.58  Aligned_cols=171  Identities=27%  Similarity=0.552  Sum_probs=154.3

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccc-----cccCccccCcCcCCCC
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE-----TRGHNFALNATFDEID   82 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~   82 (392)
                      ++||+|+++|||+..|+..|+++|+++||++++++++++                ++.+     +.|.++.++.++++++
T Consensus         9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~~~~~~g~~v~~~~~~~~~~   72 (190)
T 2vrn_A            9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG----------------EIQSMKGDIEPQEKYRVDHVVSEVQ   72 (190)
T ss_dssp             TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS----------------EEEEEETTTEEEEEEECSEEGGGCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC----------------ccccccccccCCcEEeCCCChhhCC
Confidence            689999999999999999999999999999999999876                3444     6788999999999987


Q ss_pred             CCCccEEEEcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcC
Q 016237           83 PSKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP  161 (392)
Q Consensus        83 ~~~~D~iiipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~  161 (392)
                      +.+||+||||||. ++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++.+..+++.
T Consensus        73 ~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~  152 (190)
T 2vrn_A           73 VSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDE  152 (190)
T ss_dssp             GGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCC
T ss_pred             hhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECC
Confidence            7799999999997 555567899999999999999999999999999999999999999999999999999977777766


Q ss_pred             CCcceeeecCceEecCCCCChHHHHHHHHHHh-cCCcC
Q 016237          162 ETMAACVVDGNIITGATYEGHPEFIRLFLKAL-GGTIT  198 (392)
Q Consensus       162 ~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l-~~~~~  198 (392)
                      .    +++|||+|||+|+.++.+|++++++.+ .++..
T Consensus       153 ~----~v~Dg~iiTs~g~~s~~~~~l~li~~l~~g~~~  186 (190)
T 2vrn_A          153 E----CVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHS  186 (190)
T ss_dssp             S----CEEETTEEECSSGGGHHHHHHHHHHHHHHCCCG
T ss_pred             C----EEEcCCEEEcCChhhHHHHHHHHHHHHhccccc
Confidence            5    566999999999999999999999998 66653

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=5e-35  Score=264.20  Aligned_cols=168  Identities=24%  Similarity=0.274  Sum_probs=156.2

Q ss_pred             CEEEEEecCCCCccchHHHHHHH-HhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQAL-LAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l-~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +||+|+++|||+..|+.+|+++| +.+||+|+++|++++                ++.++.|+++.++..+++++. .||
T Consensus        24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~----------------~V~~~~G~~i~~d~~l~~~~~-~yD   86 (253)
T 3ewn_A           24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD----------------PVTSDAGLAIVPTATFGTCPR-DLT   86 (253)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS----------------CEECTTSCEECCSEETTTSCS-SCS
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------eEEcCCCCEEeCCcCHHHcCC-CCC
Confidence            79999999999999999999999 578999999999976                588889999999999998863 799


Q ss_pred             EEEEcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237           88 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (392)
Q Consensus        88 ~iiipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~  166 (392)
                      +||||||. ++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|+++|..+++..    
T Consensus        87 ~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~----  162 (253)
T 3ewn_A           87 VLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEAR----  162 (253)
T ss_dssp             EEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSS----
T ss_pred             EEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCc----
Confidence            99999998 7766788999999999999999999999999999999999999999999999999988998886543    


Q ss_pred             eeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          167 CVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +|.|||+|||+|+.+++||++++++++.++.
T Consensus       163 vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~  193 (253)
T 3ewn_A          163 VVRDRNRITGAGVTAGLDFGLSMVAELRDQT  193 (253)
T ss_dssp             EEEETTEEEECSTTHHHHHHHHHHHHHSCHH
T ss_pred             EEEECCEEECCCHHHHHHHHHHHHHHHcCHH
Confidence            8999999999999999999999999998876

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=3.4e-35  Score=262.59  Aligned_cols=167  Identities=20%  Similarity=0.286  Sum_probs=155.9

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHh-CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +||+|+++|||+..|+.+|+++|+. ++|+++++|++++                ++.++.|+++.++.++++++  +||
T Consensus         6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~l~~~~--~~D   67 (231)
T 3noq_A            6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG----------------PVVASSGLVLQATTSFADCP--PLD   67 (231)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE----------------EEECTTSCEEEECEETTTCC--CCS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC----------------cEEcCCCCEEecccChhHCC--cCC
Confidence            7999999999999999999999999 8999999999876                58889999999999999874  799


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~  167 (392)
                      +||||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|+++|..+++..    +
T Consensus        68 ~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~----v  143 (231)
T 3noq_A           68 VICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHER----V  143 (231)
T ss_dssp             EEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSS----E
T ss_pred             EEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCc----E
Confidence            999999988766788999999999999999999999999999999999999999999999999988998886443    8


Q ss_pred             eecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          168 VVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       168 v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      |.|||+|||+|+.+++||++++++++.++.
T Consensus       144 V~Dg~iiTs~G~~a~~d~aL~li~~~~G~~  173 (231)
T 3noq_A          144 VRDGNLLTGGGITAGIDFALTLAAELFDAA  173 (231)
T ss_dssp             EEETTEEEECSTTHHHHHHHHHHHHHSCHH
T ss_pred             EEeCCEEECCCHHHHHHHHHHHHHHHcCHH
Confidence            999999999999999999999999998876

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=2.9e-35  Score=256.13  Aligned_cols=170  Identities=26%  Similarity=0.418  Sum_probs=153.6

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+++|||+..|+..|+++|+++|++++++|++++.               ++.++.|.++.++..++++++.+||+
T Consensus         6 kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~---------------~v~~~~g~~i~~d~~l~~~~~~~~D~   70 (190)
T 4e08_A            6 KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGE---------------AVKCSRDVQILPDTSLAQVASDKFDV   70 (190)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSS---------------CEECTTSCEEECSEETGGGTTCCCSE
T ss_pred             cEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCc---------------ceecCCCcEEECCCCHHHCCcccCCE
Confidence            799999999999999999999999999999999998721               58889999999999999988778999


Q ss_pred             EEEcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237           89 LVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (392)
Q Consensus        89 iiipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~  167 (392)
                      |+||||. +...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ +..+++.+   .+
T Consensus        71 livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~---~~  146 (190)
T 4e08_A           71 VVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDK---TV  146 (190)
T ss_dssp             EEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSC---SE
T ss_pred             EEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCC---cE
Confidence            9999996 4445678999999999999999999999999999999999999999999999888876 33455433   38


Q ss_pred             eecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          168 VVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       168 v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      |.|||+|||+|+.+++||++++++++.++.
T Consensus       147 v~dg~iiTs~g~~a~~d~al~li~~~~g~~  176 (190)
T 4e08_A          147 VKDGNLITSRGPGTAYEFALKIAEELAGKE  176 (190)
T ss_dssp             EEETTEEEECSGGGHHHHHHHHHHHHHCHH
T ss_pred             EEECCEEECCChHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999998865

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=1e-34  Score=247.70  Aligned_cols=167  Identities=35%  Similarity=0.599  Sum_probs=155.3

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .+++.++++++++..|+..++++|+++||+++++|+++++                +.++.|..+.++..+++++..+||
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~----------------v~~~~g~~i~~~~~~~~~~~~~~D   65 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGK----------------ITGKHGYSVNVDLTFEEVDPDEFD   65 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEE----------------EECTTSCEEEECEEGGGCCGGGCS
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCE----------------EecCCCcEEeccCChhHCCHhhCC
Confidence            4689999999999999999999999999999999998764                778889999999999998777899


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceE
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRC  360 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~v  360 (392)
                      +|+||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++||||...+.++..+.++.+.    .+
T Consensus        66 ~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~----~~  141 (168)
T 3l18_A           66 ALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDA----EV  141 (168)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCS----SC
T ss_pred             EEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecC----CE
Confidence            99999999876778899999999999999999999999999999999999999999999999999888888654    48


Q ss_pred             EEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          361 FTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       361 v~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      |.|||+|||+|+.++.+|+++++++|.
T Consensus       142 v~dg~iiT~~g~~~~~d~~l~li~~l~  168 (168)
T 3l18_A          142 VVDGNWVSSRHPGDLYAWMREFVKLLH  168 (168)
T ss_dssp             EEETTEEEECSGGGHHHHHHHHGGGCC
T ss_pred             EEeCCEEEcCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999873

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=6.8e-35  Score=253.94  Aligned_cols=172  Identities=22%  Similarity=0.345  Sum_probs=152.5

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC----
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP----   83 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----   83 (392)
                      |+||+|+++|||+..|+..|+++|+++|++++++++..++.             ..+.++.|.++.+|..+++++.    
T Consensus         4 M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~-------------~~v~~~~g~~v~~d~~~~~~~~~d~~   70 (194)
T 4gdh_A            4 MVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKD-------------RLVKMSRDVEMYANRSYKEIPSADDF   70 (194)
T ss_dssp             -CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTT-------------CEEECTTSCEEECSEEGGGSCCHHHH
T ss_pred             CCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCC-------------ceEecCCCceeeccccHhhCCccccc
Confidence            46999999999999999999999999999999998764321             1578889999999999988764    


Q ss_pred             -CCccEEEEcCCC-CcccccCCHHHHHHHHHHHhC-CCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEc
Q 016237           84 -SKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE  160 (392)
Q Consensus        84 -~~~D~iiipGG~-~~~~~~~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~  160 (392)
                       ++||+|+||||. ++..+..++.+++||++++++ +|+++++|+|+ +|+.+|+|+||++|+||..++.|++.+..|++
T Consensus        71 ~~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d  149 (194)
T 4gdh_A           71 AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD  149 (194)
T ss_dssp             HHHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECC
T ss_pred             cccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeec
Confidence             369999999996 466688999999999999875 79999999998 46678889999999999999999999999987


Q ss_pred             CCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          161 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       161 ~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      ..    +|+|||+|||+|+.+++||++++++.+.+++
T Consensus       150 ~~----vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~  182 (194)
T 4gdh_A          150 QP----VVLEENLITSQGPGTAMLFGLKLLEQVASKD  182 (194)
T ss_dssp             SS----EEEETTEEEECSGGGHHHHHHHHHHHHSCHH
T ss_pred             ce----EEEcCCEEECCCHhHHHHHHHHHHHHHcCHH
Confidence            65    8999999999999999999999999999876

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=8.5e-35  Score=256.71  Aligned_cols=169  Identities=16%  Similarity=0.223  Sum_probs=154.5

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhC--CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      ++||+|+++|||+..|+..|+++|+.+  +|+++++|++++                ++.++.|+++.+|..+++.+  .
T Consensus         4 ~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~~~~~~--~   65 (211)
T 3mgk_A            4 SYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG----------------LVESSQKVRVETSLYTRDEN--I   65 (211)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE----------------EEECTTCCEEEEBCCCCCSS--S
T ss_pred             ceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC----------------eEecCCCcEEEeccchhhCC--C
Confidence            579999999999999999999999998  599999999876                58889999999999998865  6


Q ss_pred             ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEE-cCCC
Q 016237           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI-EPET  163 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~-~~~~  163 (392)
                      ||+|+||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ ++...+ ....
T Consensus        66 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~  145 (211)
T 3mgk_A           66 EKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEAR  145 (211)
T ss_dssp             EEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCS
T ss_pred             CCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCe
Confidence            99999999987766778999999999999999999999999999999999999999999999999998 565544 3443


Q ss_pred             cceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          164 MAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       164 ~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                         +|.|||+|||+|+.+++||++++++++.++.
T Consensus       146 ---~v~Dg~iiTs~G~~a~~dlal~lv~~~~G~~  176 (211)
T 3mgk_A          146 ---WVKDGNIYTSSGVSAGIDMTLGFIEDLIGKE  176 (211)
T ss_dssp             ---EEEETTEEEECSHHHHHHHHHHHHHHHHCHH
T ss_pred             ---EEEeCCEEECCCHHHHHHHHHHHHHHHhCHH
Confidence               9999999999999999999999999998876

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=2.9e-34  Score=250.15  Aligned_cols=169  Identities=33%  Similarity=0.575  Sum_probs=155.0

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccC-ccccCcCcCCCCCCC
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPSK   85 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~   85 (392)
                      .++||+|+++|||+..|+..|+++|+++|++++++++++++               .+.++.|. ++.++..++++++.+
T Consensus        22 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~~v~~~~~l~~~~~~~   86 (193)
T 1oi4_A           22 LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAE   86 (193)
T ss_dssp             CCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGG
T ss_pred             cCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCc---------------ceecCCCCeEEECCCChHHCCccc
Confidence            35799999999999999999999999999999999998762               27788898 999999999887779


Q ss_pred             ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      ||+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|+|+||++|+||...+.|++.+..+.+..   
T Consensus        87 ~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~---  163 (193)
T 1oi4_A           87 FDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---  163 (193)
T ss_dssp             CSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS---
T ss_pred             CCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCC---
Confidence            99999999987666677899999999999999999999999999999999999999999999999998877777654   


Q ss_pred             eeeecCc-eEecCCCCChHHHHHHHHHHhc
Q 016237          166 ACVVDGN-IITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       166 ~~v~dg~-iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                       +|+||| +|||+|+.++.||++++++.+.
T Consensus       164 -~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          164 -VVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             -CEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             -EEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence             688999 9999999999999999999875

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=3.5e-34  Score=269.70  Aligned_cols=172  Identities=30%  Similarity=0.507  Sum_probs=158.8

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccC-ccccCcCcCCCCCCC
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPSK   85 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~   85 (392)
                      .++||+|+++|||+..|+..|+++|+.+||+++++|+++++               .+.++.|+ ++.++..++++++.+
T Consensus         9 ~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~---------------~V~ss~G~~~i~~d~~l~~v~~~~   73 (365)
T 3fse_A            9 GKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNE---------------KYKGKRGRLSTQADGTTTEAIASE   73 (365)
T ss_dssp             --CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSC---------------CEECTTSCCEECCSEETTTCCGGG
T ss_pred             CceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCc---------------eeecCCCceEEeCCCCHhhCCCcC
Confidence            46899999999999999999999999999999999999863               38888999 999999999988778


Q ss_pred             ccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        86 ~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      ||+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.|++.+..+.+..   
T Consensus        74 ~DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~---  150 (365)
T 3fse_A           74 FDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEA---  150 (365)
T ss_dssp             CSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS---
T ss_pred             CCEEEEECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCc---
Confidence            99999999998766788999999999999999999999999999999999999999999999999999777776543   


Q ss_pred             eeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                       +|+|||+|||+|+.++.+|++++++.+.+..
T Consensus       151 -vV~DGniITs~G~~a~~d~al~lIe~L~g~~  181 (365)
T 3fse_A          151 -LVVDGNLITSREPGDLAIFTTAILSRLGYGG  181 (365)
T ss_dssp             -CEEETTEEEECSGGGHHHHHHHHHHHTTCCC
T ss_pred             -EEEECCEEECCCHHHHHHHHHHHHHHhcCch
Confidence             8999999999999999999999999999886

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=3.8e-34  Score=249.00  Aligned_cols=171  Identities=21%  Similarity=0.289  Sum_probs=154.8

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCC-CCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKK-KAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS  277 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  277 (392)
                      .|+++++++++++++..|+..|+++|+++||+++++|+++ ++                ++++.|..+.++..+++++..
T Consensus         3 ~m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~----------------v~~~~g~~i~~d~~l~~~~~~   66 (190)
T 4e08_A            3 HMSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEA----------------VKCSRDVQILPDTSLAQVASD   66 (190)
T ss_dssp             -CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSC----------------EECTTSCEEECSEETGGGTTC
T ss_pred             CCCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcc----------------eecCCCcEEECCCCHHHCCcc
Confidence            3678999999999999999999999999999999999987 44                778889999999999998878


Q ss_pred             CcCEEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCC
Q 016237          278 GYDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDP  356 (392)
Q Consensus       278 ~~D~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~  356 (392)
                      +||+||||||. +...+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.++. +..++++. 
T Consensus        67 ~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~-  144 (190)
T 4e08_A           67 KFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDK-  144 (190)
T ss_dssp             CCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSC-
T ss_pred             cCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCC-
Confidence            89999999996 4555788999999999999999999999999999999999999999999999888765 45666534 


Q ss_pred             CceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          357 IDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       357 ~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                        .+|.|||+|||+|+.++.||++++|+++.|+
T Consensus       145 --~~v~dg~iiTs~g~~a~~d~al~li~~~~g~  175 (190)
T 4e08_A          145 --TVVKDGNLITSRGPGTAYEFALKIAEELAGK  175 (190)
T ss_dssp             --SEEEETTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             --cEEEECCEEECCChHHHHHHHHHHHHHhcCH
Confidence              5999999999999999999999999999875

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=8.7e-34  Score=250.01  Aligned_cols=170  Identities=13%  Similarity=0.146  Sum_probs=155.5

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcC-------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccc
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALE-------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANF  271 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  271 (392)
                      .+++++.++++++++..|+..++++|+.+|       |+++++|+++++                ++++.|..+.+|..+
T Consensus         6 ~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~----------------v~~~~G~~v~~d~~~   69 (209)
T 3er6_A            6 KKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRP----------------LIGRGGISVQPTAQW   69 (209)
T ss_dssp             -CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSC----------------EEETTTEEEECSSCG
T ss_pred             CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCc----------------eecCCCeEEeCCcCc
Confidence            357899999999999999999999999875       999999998775                788899999999999


Q ss_pred             cCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--Hc
Q 016237          272 ESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LA  347 (392)
Q Consensus       272 ~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~  347 (392)
                      +++  ++||+||||||.++..  +..++.+.+||+++++++++|++||+|+++|+++|||+||++||||...+.++  +|
T Consensus        70 ~~~--~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p  147 (209)
T 3er6_A           70 QSF--DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLFGELFP  147 (209)
T ss_dssp             GGC--SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHHHHHCT
T ss_pred             ccc--CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHHHHHCC
Confidence            886  4899999999987654  46799999999999999999999999999999999999999999999998887  68


Q ss_pred             CCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          348 GASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       348 ~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      ++++.++.   .+|.|||+|||+|+.++.||++++|+++.|+
T Consensus       148 ~~~~~~~~---~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~  186 (209)
T 3er6_A          148 EIMLMTEQ---KALIDGNVYLSSGPYSHSSVMLEIVEEYFGK  186 (209)
T ss_dssp             TSEECTTC---SEEEETTEEEECCSSCCHHHHHHHHHHHHCH
T ss_pred             CcEEecCC---EEEEeCCEEECCcHHHHHHHHHHHHHHHhCH
Confidence            99998765   5999999999999999999999999999875

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=2e-34  Score=252.26  Aligned_cols=171  Identities=24%  Similarity=0.365  Sum_probs=153.3

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC-CCCCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI-DPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~   86 (392)
                      ++||+|+++|||+..|+..|+++|+++|++++++|++++.               ++.++.|+++.++.+++++ ++.+|
T Consensus         3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~l~~~~~~~~~   67 (197)
T 2rk3_A            3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGPY   67 (197)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHTTCCC
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCC---------------ccccCCCCEEeCCcCHHHcCCccCC
Confidence            3699999999999999999999999999999999998752               4788899999999999987 66799


Q ss_pred             cEEEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCCeEEcCCCc
Q 016237           87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETM  164 (392)
Q Consensus        87 D~iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~~~~~~~~~  164 (392)
                      |+|+||||.+ ...+..++.+++||+++++++++|++||+|+++|+++|+|+||++|+||...+.+++ ++..+.+ .  
T Consensus        68 D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~-~--  144 (197)
T 2rk3_A           68 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSE-N--  144 (197)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECC-C--
T ss_pred             CEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCC-C--
Confidence            9999999974 445678999999999999999999999999999999999999999999999999986 4433433 3  


Q ss_pred             ceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          165 AACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       165 ~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                       .+|.|||+|||+|+.+++||++++++.+.++.
T Consensus       145 -~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~~  176 (197)
T 2rk3_A          145 -RVEKDGLILTSRGPGTSFEFALAIVEALNGKE  176 (197)
T ss_dssp             -SEEEETTEEEECSGGGHHHHHHHHHHHHHCHH
T ss_pred             -CEEEeCCEEECCCHHHHHHHHHHHHHHhcCHH
Confidence             38999999999999999999999999998876

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=3.5e-34  Score=251.19  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=152.4

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcC------CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALE------CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFES  273 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~  273 (392)
                      +++++.++++++++..|+..++++|+.+|      |+++++|+++++                ++++.|..+.++ .+++
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~----------------v~~~~G~~i~~d-~l~~   66 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDR----------------VLSDLGLELVAT-ELSA   66 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSE----------------EEBTTSCEEECE-ECCS
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCc----------------eEcCCCCEEECC-Cccc
Confidence            57899999999999999999999999986      999999998764                788899999999 9998


Q ss_pred             CCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCee
Q 016237          274 VDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASW  351 (392)
Q Consensus       274 ~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~  351 (392)
                      .+.++||+||||||.+.... . +.+.+||+++++++++|++||+|+++|+++|||+||++||||...+.++  +|++++
T Consensus        67 ~~~~~~D~livpGG~~~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~  144 (202)
T 3gra_A           67 AALKELDLLVVCGGLRTPLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRI  144 (202)
T ss_dssp             GGGTTCSEEEEECCTTCCSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEE
T ss_pred             ccCCCCCEEEEeCCCchhhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEe
Confidence            76779999999999876543 3 8999999999999999999999999999999999999999999998886  689998


Q ss_pred             eCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          352 LEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       352 ~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      .++    .+|.|||+|||+|+.++.||++++|+++.|+
T Consensus       145 ~~~----~~v~dg~iiTs~G~~a~~dlal~li~~~~G~  178 (202)
T 3gra_A          145 TPA----SFTLDRDRLSAASPNGAMELMLGLVRRLYGD  178 (202)
T ss_dssp             CSS----SEEEETTEEEESSHHHHHHHHHHHHHHHHCH
T ss_pred             cCC----eEEEeCCEEECCCHHHHHHHHHHHHHHHhCH
Confidence            754    4999999999999999999999999999875

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-33  Score=249.07  Aligned_cols=169  Identities=20%  Similarity=0.239  Sum_probs=150.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHH--------hCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcC
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALL--------AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFD   79 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~--------~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (392)
                      |+||+|+++|||+..|+..|+++|+        +++|+++++|++++                ++.++.|+++.+|..++
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d~~~~   68 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE----------------MITTMGGLRIKPDISLD   68 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC----------------CEECTTCCEECCSEEGG
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC----------------eEEcCCCCEEecCcCHH
Confidence            5799999999999999999999999        78899999999876                58889999999999999


Q ss_pred             CCCCCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCC-CcHHHHHH-CCCe
Q 016237           80 EIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP-PVKPVLIA-AGAS  157 (392)
Q Consensus        80 ~~~~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~-~~~~~l~~-~~~~  157 (392)
                      ++++.+||+|+||||.+.. +..++.+++||+++++++++|++||+|+++|+++|||+||++|+|| ...+.+++ ++..
T Consensus        69 ~~~~~~~D~livpGG~~~~-~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~  147 (212)
T 3efe_A           69 ECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGE  147 (212)
T ss_dssp             GCCCCTTCEEEECCCSCTT-SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCT
T ss_pred             HCCccCCCEEEECCCCccc-cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCc
Confidence            9888899999999998754 4678999999999999999999999999999999999999999997 67777765 6543


Q ss_pred             -EEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          158 -WIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       158 -~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                       +....   .+|+|||+|||+|+. ++||++++++.+.++.
T Consensus       148 ~~~~~~---~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~~  184 (212)
T 3efe_A          148 KFYELG---PAVSDANLVTASGIA-PLEFAMEVLKKIDVFT  184 (212)
T ss_dssp             TTBCCC---SEEEETTEEEECTTC-HHHHHHHHHHHHTCSC
T ss_pred             cccCCC---cEEEECCEEECCCch-HHHHHHHHHHHhcCCC
Confidence             22223   389999999999985 9999999999998864

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=2.4e-33  Score=250.62  Aligned_cols=168  Identities=23%  Similarity=0.305  Sum_probs=153.4

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHh-cCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQA-LECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~-~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      |+++|.++++++++..|+..|+++|++ .+|+++++|+++++                +.++.|..+.++..+++++  +
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~----------------V~~~~G~~v~~d~~l~~~~--~   65 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGP----------------VVASSGLVLQATTSFADCP--P   65 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEE----------------EECTTSCEEEECEETTTCC--C
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCc----------------EEcCCCCEEecccChhHCC--c
Confidence            568999999999999999999999999 78999999998775                7788899999999998864  7


Q ss_pred             cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237          279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID  358 (392)
Q Consensus       279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~  358 (392)
                      ||+||||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|||+||++||||...+.++..+..+.++    
T Consensus        66 ~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~----  141 (231)
T 3noq_A           66 LDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHE----  141 (231)
T ss_dssp             CSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCS----
T ss_pred             CCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCC----
Confidence            9999999999887788899999999999999999999999999999999999999999999998887555556543    


Q ss_pred             eEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          359 RCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       359 ~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      ++|.|||+|||+|++++.||++++|+++.|+
T Consensus       142 ~vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~  172 (231)
T 3noq_A          142 RVVRDGNLLTGGGITAGIDFALTLAAELFDA  172 (231)
T ss_dssp             SEEEETTEEEECSTTHHHHHHHHHHHHHSCH
T ss_pred             cEEEeCCEEECCCHHHHHHHHHHHHHHHcCH
Confidence            5999999999999999999999999999875

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.5e-33  Score=248.74  Aligned_cols=169  Identities=19%  Similarity=0.267  Sum_probs=154.8

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhc--CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQAL--ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS  277 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~--~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  277 (392)
                      ..+++.++++++++..|+..++++|+++  +|+++++|+++++                ++++.|..+.++..+++.+  
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~----------------V~~~~G~~v~~d~~~~~~~--   64 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGL----------------VESSQKVRVETSLYTRDEN--   64 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEE----------------EECTTCCEEEEBCCCCCSS--
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCe----------------EecCCCcEEEeccchhhCC--
Confidence            4578999999999999999999999998  4999999998764                7788999999999888764  


Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCCeeeCCC
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGASWLEPD  355 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~~~~~~~  355 (392)
                      +||+||||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++||||...+.++  +|++++..+.
T Consensus        65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~  144 (211)
T 3mgk_A           65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEA  144 (211)
T ss_dssp             SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSC
T ss_pred             CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCC
Confidence            69999999998877778899999999999999999999999999999999999999999999999987  5888887665


Q ss_pred             CCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          356 PIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       356 ~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                         .+|.|||+|||+|+.++.||++++|+++.|+
T Consensus       145 ---~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G~  175 (211)
T 3mgk_A          145 ---RWVKDGNIYTSSGVSAGIDMTLGFIEDLIGK  175 (211)
T ss_dssp             ---SEEEETTEEEECSHHHHHHHHHHHHHHHHCH
T ss_pred             ---eEEEeCCEEECCCHHHHHHHHHHHHHHHhCH
Confidence               6999999999999999999999999999875

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1.9e-33  Score=244.75  Aligned_cols=170  Identities=29%  Similarity=0.562  Sum_probs=152.7

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccC-----CCCCcccccccccCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSE-----KPGHNFTLTANFESV  274 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~i~~~~~~~~~  274 (392)
                      +++++.++++++++..|+..|+++|+++||+++++|+++++                +.+     +.|..+.++..+++.
T Consensus         8 ~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~----------------v~~~~~~~~~g~~v~~~~~~~~~   71 (190)
T 2vrn_A            8 TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGE----------------IQSMKGDIEPQEKYRVDHVVSEV   71 (190)
T ss_dssp             TTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSE----------------EEEEETTTEEEEEEECSEEGGGC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCc----------------cccccccccCCcEEeCCCChhhC
Confidence            46789999999999999999999999999999999998775                333     457778888889988


Q ss_pred             CCCCcCEEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeC
Q 016237          275 DVSGYDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLE  353 (392)
Q Consensus       275 ~~~~~D~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~  353 (392)
                      +..+||+||||||. +...+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++||||...+.++..++++.+
T Consensus        72 ~~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~  151 (190)
T 2vrn_A           72 QVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD  151 (190)
T ss_dssp             CGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECC
T ss_pred             ChhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEEC
Confidence            77789999999998 55557889999999999999999999999999999999999999999999999999988899987


Q ss_pred             CCCCceEEEcCCeEEccCCCChHHHHHHHHHHh-ccc
Q 016237          354 PDPIDRCFTDGNLVSGAAWPGHPEFISQLMALL-GIQ  389 (392)
Q Consensus       354 ~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l-~~~  389 (392)
                      +.    ++.|||+|||+|+.++.+|++++++++ .|+
T Consensus       152 ~~----~v~Dg~iiTs~g~~s~~~~~l~li~~l~~g~  184 (190)
T 2vrn_A          152 EE----CVTDKGVVTSRKPDDLPAFNKKIVEEFAEGD  184 (190)
T ss_dssp             CS----CEEETTEEECSSGGGHHHHHHHHHHHHHHCC
T ss_pred             CC----EEEcCCEEEcCChhhHHHHHHHHHHHHhccc
Confidence            65    567999999999999999999999999 554

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=7.2e-34  Score=250.54  Aligned_cols=169  Identities=21%  Similarity=0.348  Sum_probs=150.0

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+++|||+..|+..|+++|+++||+++++|+++..               ++.++.|+++.++..++++++.+||
T Consensus         9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~---------------~v~~~~G~~v~~d~~l~~~~~~~~D   73 (208)
T 3ot1_A            9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL---------------QVQGSRGVWLTAEQTLEACSAEAFD   73 (208)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS---------------EEECTTSCEEECSEEGGGCCGGGCS
T ss_pred             CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc---------------ceecCCCcEEeCCCCHHHCCCcCCC
Confidence            4799999999999999999999999999999999998521               5888999999999999998878999


Q ss_pred             EEEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhh-HHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        88 ~iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      +||||||.+ +..+..++.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.|.  ...|.+..   
T Consensus        74 ~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~--~~~~~~~~---  148 (208)
T 3ot1_A           74 ALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIP--SERLSRQR---  148 (208)
T ss_dssp             EEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSC--TTTBCCSS---
T ss_pred             EEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHcc--CCccccCc---
Confidence            999999974 5557789999999999999999999999999 9999999999999999999887662  23344333   


Q ss_pred             eeee--cCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          166 ACVV--DGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       166 ~~v~--dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                       ++.  |||+|||+|+.+++||++++++.+.++.
T Consensus       149 -vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~  181 (208)
T 3ot1_A          149 -VCYYATQHLLTSQGPGTALEFALAMIALLAGVE  181 (208)
T ss_dssp             -EEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHH
T ss_pred             -EEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHH
Confidence             555  5699999999999999999999998876

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=8.2e-33  Score=241.01  Aligned_cols=170  Identities=31%  Similarity=0.552  Sum_probs=155.2

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCC-cccccccccCCCCC
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH-NFTLTANFESVDVS  277 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~  277 (392)
                      .+++++.++++++++..|+..++++|+++||+++++|+++++               .+.++.|. .+.++..+++.+..
T Consensus        21 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~~v~~~~~l~~~~~~   85 (193)
T 1oi4_A           21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPA   85 (193)
T ss_dssp             TCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGG
T ss_pred             ccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCc---------------ceecCCCCeEEECCCChHHCCcc
Confidence            357799999999999999999999999999999999998763               25667787 88889999988777


Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCC
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI  357 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~  357 (392)
                      +||+||||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.++..++++.++.  
T Consensus        86 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~--  163 (193)
T 1oi4_A           86 EFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE--  163 (193)
T ss_dssp             GCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS--
T ss_pred             cCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCC--
Confidence            899999999987766778999999999999999999999999999999999999999999999999988799998765  


Q ss_pred             ceEEEcCC-eEEccCCCChHHHHHHHHHHhc
Q 016237          358 DRCFTDGN-LVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       358 ~~vv~dg~-lvT~~g~~~~~~~~~~li~~l~  387 (392)
                        +|.||| +|||+|+.++.||++++|++|.
T Consensus       164 --~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          164 --VVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             --CEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             --EEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence              789999 9999999999999999999985

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=1e-32  Score=243.74  Aligned_cols=169  Identities=20%  Similarity=0.295  Sum_probs=151.5

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHH--------hcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQ--------ALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANF  271 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~--------~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~  271 (392)
                      +|++++++++++++..|+..++++|+        +.+|+++++|+++++                +.++.|..+.+|..+
T Consensus         4 ~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~----------------v~~~~G~~i~~d~~~   67 (212)
T 3efe_A            4 QTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEM----------------ITTMGGLRIKPDISL   67 (212)
T ss_dssp             -CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCC----------------EECTTCCEECCSEEG
T ss_pred             cccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCe----------------EEcCCCCEEecCcCH
Confidence            47899999999999999999999999        778999999998775                778889999999999


Q ss_pred             cCCCCCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCc-hhHHHHH--HcC
Q 016237          272 ESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYP-AVKLNVL--LAG  348 (392)
Q Consensus       272 ~~~~~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~-~~~~~~~--~~~  348 (392)
                      ++++..+||+||||||.+.. +..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+|| .+.+.++  +|+
T Consensus        68 ~~~~~~~~D~livpGG~~~~-~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~  146 (212)
T 3efe_A           68 DECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKG  146 (212)
T ss_dssp             GGCCCCTTCEEEECCCSCTT-SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCC
T ss_pred             HHCCccCCCEEEECCCCccc-cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCC
Confidence            99888899999999998753 5788999999999999999999999999999999999999999996 7777775  577


Q ss_pred             CeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          349 ASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       349 ~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      +.+..+.   .+|.|||+|||+|+. +.||++++|+++.+.
T Consensus       147 ~~~~~~~---~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~  183 (212)
T 3efe_A          147 EKFYELG---PAVSDANLVTASGIA-PLEFAMEVLKKIDVF  183 (212)
T ss_dssp             TTTBCCC---SEEEETTEEEECTTC-HHHHHHHHHHHHTCS
T ss_pred             ccccCCC---cEEEECCEEECCCch-HHHHHHHHHHHhcCC
Confidence            6544444   599999999999985 999999999999885

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=5.1e-33  Score=251.05  Aligned_cols=169  Identities=25%  Similarity=0.295  Sum_probs=154.1

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHH-HhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSL-QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~-~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      ++++|.++++++++..|+..++++| +..+|+++++|+++++                +.++.|..+.++..++++. ..
T Consensus        22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~----------------V~~~~G~~i~~d~~l~~~~-~~   84 (253)
T 3ewn_A           22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDP----------------VTSDAGLAIVPTATFGTCP-RD   84 (253)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSC----------------EECTTSCEECCSEETTTSC-SS
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCe----------------EEcCCCCEEeCCcCHHHcC-CC
Confidence            5689999999999999999999999 5779999999999875                7788899999999999876 48


Q ss_pred             cCEEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCC
Q 016237          279 YDALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI  357 (392)
Q Consensus       279 ~D~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~  357 (392)
                      ||+||||||. ++..+..++.+++||+++++++++|++||+|+++|+++|||+||++||||...+.++..+..+.++   
T Consensus        85 yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~---  161 (253)
T 3ewn_A           85 LTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEA---  161 (253)
T ss_dssp             CSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCS---
T ss_pred             CCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCC---
Confidence            9999999998 776788899999999999999999999999999999999999999999999998888555666644   


Q ss_pred             ceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          358 DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       358 ~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                       .+|.|||+|||+|++++.||+++||+++.|+
T Consensus       162 -~vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~  192 (253)
T 3ewn_A          162 -RVVRDRNRITGAGVTAGLDFGLSMVAELRDQ  192 (253)
T ss_dssp             -SEEEETTEEEECSTTHHHHHHHHHHHHHSCH
T ss_pred             -cEEEECCEEECCCHHHHHHHHHHHHHHHcCH
Confidence             5999999999999999999999999999885

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=5.2e-33  Score=261.71  Aligned_cols=173  Identities=28%  Similarity=0.485  Sum_probs=158.6

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCC-cccccccccCCCCC
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGH-NFTLTANFESVDVS  277 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~  277 (392)
                      .++++|+++++++++..|+..|+++|+.+||+++++|+++++               .+.++.|. .+.++..++++++.
T Consensus         8 ~~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~---------------~V~ss~G~~~i~~d~~l~~v~~~   72 (365)
T 3fse_A            8 SGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNE---------------KYKGKRGRLSTQADGTTTEAIAS   72 (365)
T ss_dssp             ---CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSC---------------CEECTTSCCEECCSEETTTCCGG
T ss_pred             CCceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCc---------------eeecCCCceEEeCCCCHhhCCCc
Confidence            467899999999999999999999999999999999998764               25677888 89999999998777


Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCC
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI  357 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~  357 (392)
                      +||+||||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|||+||++||||...+.++++++++.+.   
T Consensus        73 ~~DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~---  149 (365)
T 3fse_A           73 EFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDE---  149 (365)
T ss_dssp             GCSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCS---
T ss_pred             CCCEEEEECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecC---
Confidence            89999999999877778999999999999999999999999999999999999999999999999999999999864   


Q ss_pred             ceEEEcCCeEEccCCCChHHHHHHHHHHhcccc
Q 016237          358 DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQV  390 (392)
Q Consensus       358 ~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~  390 (392)
                       .+|.|||+|||+|+.++.||++++|++|.|+.
T Consensus       150 -~vV~DGniITs~G~~a~~d~al~lIe~L~g~~  181 (365)
T 3fse_A          150 -ALVVDGNLITSREPGDLAIFTTAILSRLGYGG  181 (365)
T ss_dssp             -SCEEETTEEEECSGGGHHHHHHHHHHHTTCCC
T ss_pred             -cEEEECCEEECCCHHHHHHHHHHHHHHhcCch
Confidence             48999999999999999999999999999863

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=4.5e-33  Score=243.68  Aligned_cols=171  Identities=23%  Similarity=0.297  Sum_probs=152.8

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCC-CCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESV-DVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~  278 (392)
                      |++++.++++++++..|+..|+++|+++||+++++|++++.               .+.++.|..+.++..+++. +..+
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~l~~~~~~~~   66 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGP   66 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHTTCC
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCC---------------ccccCCCCEEeCCcCHHHcCCccC
Confidence            46789999999999999999999999999999999998752               2677888889999888887 6679


Q ss_pred             cCEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcC-CeeeCCCC
Q 016237          279 YDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAG-ASWLEPDP  356 (392)
Q Consensus       279 ~D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~-~~~~~~~~  356 (392)
                      ||+||||||.+ ...+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.++..+ .++.+.  
T Consensus        67 ~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~--  144 (197)
T 2rk3_A           67 YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN--  144 (197)
T ss_dssp             CSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC--
T ss_pred             CCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCC--
Confidence            99999999974 45578899999999999999999999999999999999999999999999999887433 455443  


Q ss_pred             CceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          357 IDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       357 ~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                        .+|.|||+|||+|+.++.||++++|+++.|+
T Consensus       145 --~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~  175 (197)
T 2rk3_A          145 --RVEKDGLILTSRGPGTSFEFALAIVEALNGK  175 (197)
T ss_dssp             --SEEEETTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             --CEEEeCCEEECCCHHHHHHHHHHHHHHhcCH
Confidence              5999999999999999999999999999875

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=3.7e-33  Score=243.01  Aligned_cols=172  Identities=19%  Similarity=0.317  Sum_probs=152.4

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCC---
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDV---  276 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~---  276 (392)
                      .|+||++++++|+++.|+..|+++|+++|++++++++..+.             ...++++.|..+.+|..++++..   
T Consensus         3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~-------------~~~v~~~~g~~v~~d~~~~~~~~~d~   69 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENK-------------DRLVKMSRDVEMYANRSYKEIPSADD   69 (194)
T ss_dssp             --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCT-------------TCEEECTTSCEEECSEEGGGSCCHHH
T ss_pred             CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCC-------------CceEecCCCceeeccccHhhCCcccc
Confidence            58899999999999999999999999999999999986542             23467788999999998888754   


Q ss_pred             --CCcCEEEEcCCC-ChhhccCChHHHHHHHHHHHc-CCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeee
Q 016237          277 --SGYDALVVPGGR-APEYLALNENVIALVKDFMEA-KKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWL  352 (392)
Q Consensus       277 --~~~D~viipgg~-~~~~~~~~~~l~~~l~~~~~~-g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~  352 (392)
                        ++||+|+||||. +++.+..++.+.+|||+++++ +|+++++|+|+ +|+.+|+|+||++||||..++++++.+++|.
T Consensus        70 ~~~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~  148 (194)
T 4gdh_A           70 FAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYL  148 (194)
T ss_dssp             HHHHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEEC
T ss_pred             ccccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeee
Confidence              369999999997 466789999999999999975 78999999998 5778899999999999999999999999998


Q ss_pred             CCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          353 EPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       353 ~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      +++    +|.|||+|||+|+.++.||+++++++|.|+
T Consensus       149 d~~----vV~Dg~iiTs~g~~~~~d~al~lve~l~G~  181 (194)
T 4gdh_A          149 DQP----VVLEENLITSQGPGTAMLFGLKLLEQVASK  181 (194)
T ss_dssp             CSS----EEEETTEEEECSGGGHHHHHHHHHHHHSCH
T ss_pred             cce----EEEcCCEEECCCHhHHHHHHHHHHHHHcCH
Confidence            764    999999999999999999999999999885

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=1.6e-33  Score=248.35  Aligned_cols=168  Identities=21%  Similarity=0.271  Sum_probs=152.3

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCC-CCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKK-KAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      |++++.++++++++..|+..++++|+++||+++++|+++ ++                +.++.|..+.++..+++++..+
T Consensus         8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~----------------v~~~~G~~v~~d~~l~~~~~~~   71 (208)
T 3ot1_A            8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQ----------------VQGSRGVWLTAEQTLEACSAEA   71 (208)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSE----------------EECTTSCEEECSEEGGGCCGGG
T ss_pred             cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcc----------------eecCCCcEEeCCCCHHHCCCcC
Confidence            578999999999999999999999999999999999985 33                7788899999999999987789


Q ss_pred             cCEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHH-HHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCC
Q 016237          279 YDALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQ-QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDP  356 (392)
Q Consensus       279 ~D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~  356 (392)
                      ||+||||||.+ ...+..++.+.+||+++++++|+|+++|+|+ ++|+++|||+||++|+||...+.+  |+++|.++. 
T Consensus        72 ~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l--~~~~~~~~~-  148 (208)
T 3ot1_A           72 FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHI--PSERLSRQR-  148 (208)
T ss_dssp             CSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGS--CTTTBCCSS-
T ss_pred             CCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHc--cCCccccCc-
Confidence            99999999974 5567889999999999999999999999999 999999999999999999998776  778887654 


Q ss_pred             CceEEE--cCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          357 IDRCFT--DGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       357 ~~~vv~--dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                         +|.  |||+|||+|+.++.||++++|+++.|+
T Consensus       149 ---vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~  180 (208)
T 3ot1_A          149 ---VCYYATQHLLTSQGPGTALEFALAMIALLAGV  180 (208)
T ss_dssp             ---EEEEGGGTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             ---EEEeCCCCEEECCCHHHHHHHHHHHHHHhcCH
Confidence               565  569999999999999999999999875

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=3.8e-33  Score=242.27  Aligned_cols=169  Identities=22%  Similarity=0.327  Sum_probs=148.7

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHh-CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |+||+|+++|||+..|+..|+++|++ ++|+++++|++++                ++.++.|.++.++.+++++++.+|
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~----------------~v~~~~g~~v~~~~~~~~~~~~~~   64 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDI   64 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTC
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC----------------ceeeCCCcEEeccccHHHCCcccC
Confidence            36999999999999999999999999 9999999999876                477888999999999999887799


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH-CCC--eEEcCCC
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA--SWIEPET  163 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~-~~~--~~~~~~~  163 (392)
                      |+|+||||.+.. +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ ++.  .+.+..+
T Consensus        65 D~livpGG~~~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~  143 (188)
T 2fex_A           65 DALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPR  143 (188)
T ss_dssp             SEEEECCBSHHH-HTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSS
T ss_pred             CEEEECCCCccc-ccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCC
Confidence            999999998654 457889999999999999999999999999999999999999999976555544 554  2443332


Q ss_pred             cceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          164 MAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       164 ~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                         +|.|||+|||+|+. ++||++++++.+.+..
T Consensus       144 ---~v~Dg~iiTs~g~~-~~d~al~lv~~l~~~~  173 (188)
T 2fex_A          144 ---AVSDGGVVTAAGSA-PVSFAVEILKSLGLFG  173 (188)
T ss_dssp             ---CEEETTEEEECTTC-HHHHHHHHHHHTTCCS
T ss_pred             ---EEEECCEEECCCcc-HHHHHHHHHHHccCCC
Confidence               89999999999985 8999999999998765

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=100.00  E-value=2.8e-32  Score=243.58  Aligned_cols=180  Identities=23%  Similarity=0.373  Sum_probs=150.4

Q ss_pred             CEEEEEec----------CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCccccccccc-----Cccc
Q 016237            9 RSVLLLCG----------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG-----HNFA   73 (392)
Q Consensus         9 ~kI~ill~----------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~   73 (392)
                      |||+|+++          +||+..|+..|+++|+++||+++++|+++++......++.+        ...+     .++.
T Consensus         6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~--------~~~~~~~~~~~i~   77 (224)
T 1u9c_A            6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINE--------KDPSWAEAEAALK   77 (224)
T ss_dssp             CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSS--------CCGGGHHHHHHTT
T ss_pred             ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCcccccc--------HHHHHhhhhHhhc
Confidence            69999999          99999999999999999999999999998642111000000        0113     5688


Q ss_pred             cCcCcCCCCCCCccEEEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc------ccCCeeEecCCC
Q 016237           74 LNATFDEIDPSKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPP  146 (392)
Q Consensus        74 ~~~~~~~~~~~~~D~iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag------ll~g~~~T~~~~  146 (392)
                      ++..++++++.+||+||||||++.. .+..++.+++||+++++++|+|++||+|+++|+++|      ||+||++|+||.
T Consensus        78 ~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~~  157 (224)
T 1u9c_A           78 HTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTD  157 (224)
T ss_dssp             SBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCH
T ss_pred             CCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCCC
Confidence            8989998877799999999999864 478899999999999999999999999999999999      999999999998


Q ss_pred             cHH---------------HHHHCCCeEEcCCCc-ceeeecCceEecCCCCChHHHHHHHHHHhcCC
Q 016237          147 VKP---------------VLIAAGASWIEPETM-AACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (392)
Q Consensus       147 ~~~---------------~l~~~~~~~~~~~~~-~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~  196 (392)
                      ..+               .|++.+..+.+.+.+ ..+|+|||+|||+|+.++++|++++++.+.++
T Consensus       158 ~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          158 EEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             HHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             HHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence            655               466677788766421 24899999999999999999999999998875

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.98  E-value=2.9e-32  Score=236.68  Aligned_cols=168  Identities=24%  Similarity=0.365  Sum_probs=149.1

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHh-cCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQA-LECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~-~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      |+++.+++++++++.|+..++++|++ .+|+++++|+++++                +.++.|..+.++..+++.+..+|
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~----------------v~~~~g~~v~~~~~~~~~~~~~~   64 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMP----------------VTSMGGLKVTPDTSYDALDPVDI   64 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSC----------------EECTTCCEEECSEEGGGCCTTTC
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCc----------------eeeCCCcEEeccccHHHCCcccC
Confidence            57899999999999999999999999 99999999998775                67788999999999998877799


Q ss_pred             CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH--HcCC-eeeCCCC
Q 016237          280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL--LAGA-SWLEPDP  356 (392)
Q Consensus       280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~--~~~~-~~~~~~~  356 (392)
                      |+||||||.+.. +..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||.....++  +|++ .+.++. 
T Consensus        65 D~livpGG~~~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~-  142 (188)
T 2fex_A           65 DALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP-  142 (188)
T ss_dssp             SEEEECCBSHHH-HTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS-
T ss_pred             CEEEECCCCccc-ccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCC-
Confidence            999999998753 46789999999999999999999999999999999999999999998666543  6776 455432 


Q ss_pred             CceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          357 IDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       357 ~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                        ++|.|||+|||+|++ +.||++++|+++.+.
T Consensus       143 --~~v~Dg~iiTs~g~~-~~d~al~lv~~l~~~  172 (188)
T 2fex_A          143 --RAVSDGGVVTAAGSA-PVSFAVEILKSLGLF  172 (188)
T ss_dssp             --SCEEETTEEEECTTC-HHHHHHHHHHHTTCC
T ss_pred             --CEEEECCEEECCCcc-HHHHHHHHHHHccCC
Confidence              289999999999985 899999999999875

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.98  E-value=2.2e-32  Score=245.56  Aligned_cols=189  Identities=19%  Similarity=0.271  Sum_probs=150.0

Q ss_pred             CCEEEEEecC------------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccC----CCCccccc---ccc
Q 016237            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQ----STGHQTYS---ETR   68 (392)
Q Consensus         8 ~~kI~ill~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~----~~~~~~~~---~~~   68 (392)
                      |+||+|++.+            ||+..|+..|+++|+++|++|+++|+++++. .+..++..    ....+.+.   ++.
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~-~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFG-WDEHYLPKSFIGGEDKMNFETKNSAF   81 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCC-BCTTC--------------------C
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCC-cCCccccccccCHHHHHHHHHhhHHH
Confidence            5799999973            7888999999999999999999999987641 21111110    00111121   234


Q ss_pred             cCccccCcCcCCCCCCCccEEEEcCCCCc-ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-------cccCCee
Q 016237           69 GHNFALNATFDEIDPSKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRK  140 (392)
Q Consensus        69 g~~~~~~~~~~~~~~~~~D~iiipGG~~~-~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-------gll~g~~  140 (392)
                      +.++.++.+++++++.+||+||||||+++ ..+..++.+.+||+++++++|+|++||+|+++|+++       |||+||+
T Consensus        82 ~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~  161 (244)
T 3kkl_A           82 NKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKA  161 (244)
T ss_dssp             HHHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred             HHHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCce
Confidence            56789999999999899999999999986 457899999999999999999999999999999999       9999999


Q ss_pred             EecCCCcH-------------------HHHHHCCCeEEcC--CCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          141 CTAYPPVK-------------------PVLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       141 ~T~~~~~~-------------------~~l~~~~~~~~~~--~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +|+||..+                   +.|++.|+.|.+.  +.+..+|+|||+|||+|+.++.++++++++.+..-+
T Consensus       162 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~  239 (244)
T 3kkl_A          162 ITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE  239 (244)
T ss_dssp             ECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred             ecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence            99999874                   3455678899874  112349999999999999999999999999987643

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.98  E-value=3.2e-32  Score=238.95  Aligned_cols=163  Identities=21%  Similarity=0.232  Sum_probs=142.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhC-CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |+||+|+++|||+..|+..|.++|+++ +|+++++|++++                 +.++.|+++.++.+++++ +.+|
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~-----------------V~~~~G~~v~~d~~l~~~-~~~~   64 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI-----------------VSSIGGFKTSVDYIIGLE-PANF   64 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE-----------------EEBTTSCEEECSEETTSS-CSCC
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC-----------------EEecCCcEEecCcChhhC-CcCC
Confidence            579999999999999999999999998 999999999862                 667889999999999987 4689


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHH----C-CCeEEcC
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA----A-GASWIEP  161 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~----~-~~~~~~~  161 (392)
                      |+|+||||.++..  .++.+++||+++++++++|++||+|+++|+++|||+||++|+||.  +.+++    + +..+.+ 
T Consensus        65 D~livpGG~~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~--~~~~~~~~~~~~~~~~~-  139 (206)
T 3f5d_A           65 NLLVMIGGDSWSN--DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFV--YLWKDYKQYKPISSFVE-  139 (206)
T ss_dssp             SEEEECCBSCCCC--CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCG--GGGTTCTTCCCSSCBCC-
T ss_pred             CEEEEcCCCChhh--cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCH--HHhhhhHhhcCCCeEcc-
Confidence            9999999987764  889999999999999999999999999999999999999999994  23332    2 344543 


Q ss_pred             CCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       162 ~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +   .+|+|||+|||+|+. ++||++++++.+..+.
T Consensus       140 ~---~~V~Dg~iiTs~G~a-~id~al~li~~l~~~~  171 (206)
T 3f5d_A          140 K---QAVRDKNLVTANGTA-PIEFTNLILEMIDFDT  171 (206)
T ss_dssp             S---SEEEETTEEEECTTC-HHHHHHHHHHHTTCSC
T ss_pred             C---CEEEECCEEECCCch-HHHHHHHHHHHhCcch
Confidence            3   389999999999985 9999999999887544

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=99.97  E-value=1.9e-32  Score=241.07  Aligned_cols=171  Identities=19%  Similarity=0.276  Sum_probs=151.5

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      |++++.++++++++..|+..|+++|+++||+++++|++++..             ..+.++.|..+.++..+++++..+|
T Consensus         1 M~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~-------------~~v~~~~g~~v~~~~~l~~~~~~~~   67 (205)
T 2ab0_A            1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEY   67 (205)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCC
T ss_pred             CCcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCC-------------ceeecCCCeEEecCCCHHHCCcccC
Confidence            457899999999999999999999999999999999987610             0267788888999988998877799


Q ss_pred             CEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHH-HHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCC
Q 016237          280 DALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQ-QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI  357 (392)
Q Consensus       280 D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~  357 (392)
                      |+||||||.+ +..+..++.+.+||+++++++|+|+++|+|+ ++|+++|||+||++||||..++.+  +++++.++   
T Consensus        68 D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~--~~~~~~~~---  142 (205)
T 2ab0_A           68 DVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLDK---  142 (205)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGS--CTTTBCCC---
T ss_pred             CEEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHc--cCCEEecC---
Confidence            9999999974 5557789999999999999999999999999 999999999999999999977644  66777765   


Q ss_pred             ceEEEcCCe--EEccCCCChHHHHHHHHHHhccc
Q 016237          358 DRCFTDGNL--VSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       358 ~~vv~dg~l--vT~~g~~~~~~~~~~li~~l~~~  389 (392)
                       .+|.|||+  |||+|+.++.||++++++++.|.
T Consensus       143 -~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~  175 (205)
T 2ab0_A          143 -RVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGR  175 (205)
T ss_dssp             -SEEEETTTTEEEECSGGGHHHHHHHHHHHHTCH
T ss_pred             -CEEEeCCcCeEECcChhhHHHHHHHHHHHhcCh
Confidence             48899999  99999999999999999999875

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.97  E-value=5.3e-32  Score=244.30  Aligned_cols=187  Identities=19%  Similarity=0.290  Sum_probs=148.4

Q ss_pred             CCEEEEEec------------CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCC----CCcccc---cccc
Q 016237            8 KRSVLLLCG------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS----TGHQTY---SETR   68 (392)
Q Consensus         8 ~~kI~ill~------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~----~~~~~~---~~~~   68 (392)
                      |+||+|++.            +|++..|+..|+++|+++||+|+++|+++++. .+..++...    ...+.+   .++.
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~~~-~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFG-WDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCC-BCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCCCC-cCcccccccccChHHHHHHHhhhHHH
Confidence            469999997            68888999999999999999999999987631 111111000    000000   1134


Q ss_pred             cCccccCcCcCCCCCCCccEEEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc-------ccCCee
Q 016237           69 GHNFALNATFDEIDPSKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-------VVKGRK  140 (392)
Q Consensus        69 g~~~~~~~~~~~~~~~~~D~iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag-------ll~g~~  140 (392)
                      |.++.++..++++++.+||+||||||+++. .+..++.+++||+++++++++|++||+|+++|+++|       ||+||+
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~  161 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKS  161 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcE
Confidence            667888999999888899999999999864 477899999999999999999999999999999999       999999


Q ss_pred             EecCCCcHHH-------------------HHHCCCeEEcC--CCcceeeecCceEecCCCCChHHHHHHHHHHhcC
Q 016237          141 CTAYPPVKPV-------------------LIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (392)
Q Consensus       141 ~T~~~~~~~~-------------------l~~~~~~~~~~--~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~  195 (392)
                      +|+||..++.                   |++.++.+...  +.+..+|+|||+|||+|+.++++|++++++.+..
T Consensus       162 ~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          162 ITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             EeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            9999986554                   55567888742  1123499999999999999999999999997753

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.97  E-value=1.3e-31  Score=234.97  Aligned_cols=164  Identities=23%  Similarity=0.283  Sum_probs=144.3

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhc-CCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQAL-ECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~-~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      +|+++.++++++++..|+..+.++|+++ +|+++++|++++                 ++++.|..+.++..++++ +.+
T Consensus         2 ~m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~-----------------V~~~~G~~v~~d~~l~~~-~~~   63 (206)
T 3f5d_A            2 SLKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI-----------------VSSIGGFKTSVDYIIGLE-PAN   63 (206)
T ss_dssp             -CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE-----------------EEBTTSCEEECSEETTSS-CSC
T ss_pred             CccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC-----------------EEecCCcEEecCcChhhC-CcC
Confidence            4789999999999999999999999998 999999999753                 567789999999999987 468


Q ss_pred             cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHH---HHHcCCeeeCCC
Q 016237          279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLN---VLLAGASWLEPD  355 (392)
Q Consensus       279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~---~~~~~~~~~~~~  355 (392)
                      ||+|+||||.++..  .++.+.+||+++++++++|++||+|+++|+++|||+||++||||.....   ..++++++.+. 
T Consensus        64 ~D~livpGG~~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~-  140 (206)
T 3f5d_A           64 FNLLVMIGGDSWSN--DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEK-  140 (206)
T ss_dssp             CSEEEECCBSCCCC--CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCS-
T ss_pred             CCEEEEcCCCChhh--cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccC-
Confidence            99999999998655  8999999999999999999999999999999999999999999943211   12468888754 


Q ss_pred             CCceEEEcCCeEEccCCCChHHHHHHHHHHhcc
Q 016237          356 PIDRCFTDGNLVSGAAWPGHPEFISQLMALLGI  388 (392)
Q Consensus       356 ~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~  388 (392)
                         .+|.|||+|||+|+. +.||++++|++|..
T Consensus       141 ---~~V~Dg~iiTs~G~a-~id~al~li~~l~~  169 (206)
T 3f5d_A          141 ---QAVRDKNLVTANGTA-PIEFTNLILEMIDF  169 (206)
T ss_dssp             ---SEEEETTEEEECTTC-HHHHHHHHHHHTTC
T ss_pred             ---CEEEECCEEECCCch-HHHHHHHHHHHhCc
Confidence               499999999999985 99999999998874

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=99.97  E-value=8.7e-33  Score=243.17  Aligned_cols=170  Identities=24%  Similarity=0.394  Sum_probs=148.9

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+++|||+..|+..|+++|+++||+++++|++++..             .++.++.|.++.++.+++++++.+||+
T Consensus         3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~-------------~~v~~~~g~~v~~~~~l~~~~~~~~D~   69 (205)
T 2ab0_A            3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEYDV   69 (205)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCCSE
T ss_pred             cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCC-------------ceeecCCCeEEecCCCHHHCCcccCCE
Confidence            6999999999999999999999999999999999987510             037778899999999999887779999


Q ss_pred             EEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhh-HHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237           89 LVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (392)
Q Consensus        89 iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~  166 (392)
                      ||||||.+ +..+..++.+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||..++.+.+  ..+.+ +.   
T Consensus        70 livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~--~~~~~-~~---  143 (205)
T 2ab0_A           70 IVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA--EQWLD-KR---  143 (205)
T ss_dssp             EEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCT--TTBCC-CS---
T ss_pred             EEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccC--CEEec-CC---
Confidence            99999974 5556789999999999999999999999999 99999999999999999987654432  23433 32   


Q ss_pred             eeecCce--EecCCCCChHHHHHHHHHHhcCCc
Q 016237          167 CVVDGNI--ITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       167 ~v~dg~i--iT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +|+|||+  |||+|+.++.|+++++++.+.++.
T Consensus       144 vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~~  176 (205)
T 2ab0_A          144 VVWDARVKLLTSQGPGTAIDFGLKIIDLLVGRE  176 (205)
T ss_dssp             EEEETTTTEEEECSGGGHHHHHHHHHHHHTCHH
T ss_pred             EEEeCCcCeEECcChhhHHHHHHHHHHHhcChH
Confidence            7889999  999999999999999999998876

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.97  E-value=1.7e-32  Score=245.05  Aligned_cols=167  Identities=20%  Similarity=0.249  Sum_probs=149.1

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCC--CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS   84 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   84 (392)
                      +++||+|+++|||+..|+..|+++|+.++  |+++++| +++                ++.++.|+.+.++..+++  ..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~----------------~V~ss~G~~v~~d~~l~~--~~   79 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP----------------EHHSQLGMTVKTDGHVSE--VK   79 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS----------------EEEBTTCCEEECSEEGGG--GG
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC----------------cEEecCCcEEecCccccc--cc
Confidence            46799999999999999999999999976  8999999 765                578889999999998887  45


Q ss_pred             CccEEEEcCC-CCcccccCCHHHHHHHHHHHhCCC-eEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCC
Q 016237           85 KYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE  162 (392)
Q Consensus        85 ~~D~iiipGG-~~~~~~~~~~~l~~~l~~~~~~~~-~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~  162 (392)
                      +||+|||||| .++..+..++.+++||  ++++++ +|++||+|+++|+++|||+||++|+||...+.|++.+..+.+. 
T Consensus        80 ~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~-  156 (236)
T 3bhn_A           80 EQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDL-  156 (236)
T ss_dssp             GCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSS-
T ss_pred             CCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCC-
Confidence            8999999999 6766577899999999  667777 9999999999999999999999999999999999866666333 


Q ss_pred             CcceeeecCceEecCCCCChHHHHHHHHHHhcCCcC
Q 016237          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  198 (392)
Q Consensus       163 ~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~~  198 (392)
                         .+|+|||+|||+|+.+++||++++++.+.++..
T Consensus       157 ---~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~~  189 (236)
T 3bhn_A          157 ---PLVIEGNIATAGGCLSLLYLVGWLAERLFDSVK  189 (236)
T ss_dssp             ---SEEEETTEEEECSGGGHHHHHHHHHHHHSCHHH
T ss_pred             ---cEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHH
Confidence               389999999999999999999999999988863

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=6.8e-32  Score=261.21  Aligned_cols=190  Identities=58%  Similarity=1.085  Sum_probs=167.3

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+++|||+..|+..|+++|+++|++++++|++++++..+..++.+..+.+.+.++.|..+.++..++++++.+||
T Consensus       205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  284 (396)
T 3uk7_A          205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYD  284 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred             cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCC
Confidence            57999999999999999999999999999999999998764433333333344446778899999999999999888999


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCccee
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~  167 (392)
                      +|+||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++..+..|++.+....+
T Consensus       285 ~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~  364 (396)
T 3uk7_A          285 ALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRC  364 (396)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCE
T ss_pred             EEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeE
Confidence            99999998776678899999999999999999999999999999999999999999999999998888888876521128


Q ss_pred             eecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          168 VVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       168 v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      |.|||+|||+|+.++.||++++++.+.++.
T Consensus       365 v~Dg~iiTs~g~~~~~d~~l~li~~l~~~~  394 (396)
T 3uk7_A          365 FTDGNLVTGAAWPGHPEFVSQLMALLGIQV  394 (396)
T ss_dssp             EEETTEEEESSGGGHHHHHHHHHHHHTCEE
T ss_pred             EEcCCEEECCCchhHHHHHHHHHHHhcccc
Confidence            999999999999999999999999998754

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=1.4e-31  Score=239.00  Aligned_cols=182  Identities=25%  Similarity=0.388  Sum_probs=152.0

Q ss_pred             CCccEEEEeC----------CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCC-----Cc
Q 016237          200 SDKRILFLCG----------DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG-----HN  264 (392)
Q Consensus       200 ~~~~v~ill~----------~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~  264 (392)
                      |+++|+++++          +|++..|+..|+++|+++||+++++|+++++......++.        ....+     ..
T Consensus         4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~--------~~~~~~~~~~~~   75 (224)
T 1u9c_A            4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSIN--------EKDPSWAEAEAA   75 (224)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSS--------SCCGGGHHHHHH
T ss_pred             CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccc--------cHHHHHhhhhHh
Confidence            4579999999          9999999999999999999999999999876321110000        00012     45


Q ss_pred             ccccccccCCCCCCcCEEEEcCCCChh-hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC------CCCCceeecC
Q 016237          265 FTLTANFESVDVSGYDALVVPGGRAPE-YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAY  337 (392)
Q Consensus       265 i~~~~~~~~~~~~~~D~viipgg~~~~-~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag------lL~g~~~T~~  337 (392)
                      +.++..+++++..+||+||||||++.. .+..++.+.+||+++++++|+|++||+|+++|+++|      ||+||++|+|
T Consensus        76 i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~  155 (224)
T 1u9c_A           76 LKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSF  155 (224)
T ss_dssp             TTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCS
T ss_pred             hcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecC
Confidence            777888888777789999999999864 478899999999999999999999999999999999      9999999999


Q ss_pred             chhHH---------------HHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          338 PAVKL---------------NVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       338 ~~~~~---------------~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      |...+               .++..++++.+..++ ..+|.|||+|||+|+.++.+|++++|+++.|+
T Consensus       156 ~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          156 TDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             CHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CCHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence            98665               356678888766422 25999999999999999999999999999875

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.97  E-value=1.1e-31  Score=240.93  Aligned_cols=187  Identities=22%  Similarity=0.323  Sum_probs=149.7

Q ss_pred             CCEEEEEecC------------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCC--CC--cccccc---cc
Q 016237            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS--TG--HQTYSE---TR   68 (392)
Q Consensus         8 ~~kI~ill~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~--~~--~~~~~~---~~   68 (392)
                      |+||+|++.+            ||+..|+..|+++|+++|++|+++|+.+++ ..+..++...  .+  .+.+..   ..
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~   87 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTF-GWDEHSLTQEYLSKEDEKVLHSEHNHF   87 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCC-CBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCc-ccCcccccccccCHHHHHHHHhhhHHH
Confidence            5799999986            788999999999999999999999998754 1111111100  00  001111   12


Q ss_pred             cCcccc-CcCcCCCCCCCccEEEEcCCCCc-ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC------cccCCee
Q 016237           69 GHNFAL-NATFDEIDPSKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA------DVVKGRK  140 (392)
Q Consensus        69 g~~~~~-~~~~~~~~~~~~D~iiipGG~~~-~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a------gll~g~~  140 (392)
                      +..+.+ +..++++++.+||+||||||+++ ..+..++.+++||+++++++|+|++||+|+++|+++      |||+||+
T Consensus        88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred             HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence            334666 88899999999999999999987 457899999999999999999999999999999999      9999999


Q ss_pred             EecCCCcHH-------------------HHHHCCCeEEcC--CCcceeeecCceEecCCCCChHHHHHHHHHHhcC
Q 016237          141 CTAYPPVKP-------------------VLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (392)
Q Consensus       141 ~T~~~~~~~-------------------~l~~~~~~~~~~--~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~  195 (392)
                      +|+||..++                   .|++.|+.|++.  +.+..+|+|||+|||+|+.++.++++++++.|..
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~  243 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEG  243 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHH
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhh
Confidence            999998743                   356678999874  1123499999999999999999999999998864

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.97  E-value=9.1e-32  Score=230.95  Aligned_cols=159  Identities=19%  Similarity=0.345  Sum_probs=140.3

Q ss_pred             CEEEEEecC---C---CCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCC-
Q 016237            9 RSVLLLCGD---Y---MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI-   81 (392)
Q Consensus         9 ~kI~ill~~---g---~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-   81 (392)
                      +||+|+++|   |   |+..|+..      +++|+++++|++++.               ++.++.|+++.++..++++ 
T Consensus         3 ~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~~~~~~   61 (175)
T 3cne_A            3 KKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTK---------------EIKTNSGMVLIVDDVIANLK   61 (175)
T ss_dssp             CEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSS---------------EEEBTTSCEEECSEEGGGGT
T ss_pred             cEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCC---------------ceecCCCeEEEeccCHHHhc
Confidence            699999999   8   77766665      789999999998532               5888899999999999987 


Q ss_pred             -CCCCccEEEEcCC--C-Cccccc---CCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHC
Q 016237           82 -DPSKYDGLVIPGG--R-APEYLA---MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA  154 (392)
Q Consensus        82 -~~~~~D~iiipGG--~-~~~~~~---~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~  154 (392)
                       ++.+||+|+||||  . ++..+.   .++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ 
T Consensus        62 ~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~-  140 (175)
T 3cne_A           62 GHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQN-  140 (175)
T ss_dssp             TCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCS-
T ss_pred             cCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhc-
Confidence             6779999999999  6 665555   7889999999999999999999999999999999999999999999888876 


Q ss_pred             CCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhc
Q 016237          155 GASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       155 ~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                       ..+.+..    +|.|||+|||+|+.+++||++++++.+.
T Consensus       141 -~~~~~~~----~v~Dg~iiTs~g~~~~~d~al~li~~l~  175 (175)
T 3cne_A          141 -GIATDEK----SEIDGNFFTAQDENTIWTMLPKVIEALK  175 (175)
T ss_dssp             -SEEESSS----EEEETTEEEESSGGGGGGTHHHHHHHHC
T ss_pred             -CEEeCCC----EEEeCCEEeCCChHHHHHHHHHHHHHhC
Confidence             5665433    8999999999999999999999999863

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.97  E-value=3.8e-31  Score=244.03  Aligned_cols=188  Identities=17%  Similarity=0.229  Sum_probs=152.7

Q ss_pred             CCEEEEEecC--------------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccc---cC
Q 016237            8 KRSVLLLCGD--------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR---GH   70 (392)
Q Consensus         8 ~~kI~ill~~--------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---g~   70 (392)
                      +|||+|++.+              ||+..|+..|+++|+++||+|+++|+++++...+.+++...  ...+.+..   |.
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~--~~~~~~~~~~~g~  125 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHK--DEKVMPFFEQHKS  125 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTT--CTTHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcccccccccccc--cHHHHHHHHhccc
Confidence            4799999985              79999999999999999999999999987643333332110  11122222   77


Q ss_pred             ccccCcCcCCC-----CCCCccEEEEcCCCCcc-cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc----ccCCee
Q 016237           71 NFALNATFDEI-----DPSKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGRK  140 (392)
Q Consensus        71 ~~~~~~~~~~~-----~~~~~D~iiipGG~~~~-~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag----ll~g~~  140 (392)
                      .+.++..++++     ++.+||+||||||+++. .+..++.+++||+++++++++|++||+|+++|+.++    ||+||+
T Consensus       126 ~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          126 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             eecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCE
Confidence            88888888874     56789999999999877 578899999999999999999999999999998874    999999


Q ss_pred             EecCCCcHHHH-------------------HHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          141 CTAYPPVKPVL-------------------IAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       141 ~T~~~~~~~~l-------------------~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +|+||...+.+                   ++.++.+.+.+.+..+|+|||+|||+|+.++++|++++++.+.++.
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~  281 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAY  281 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCch
Confidence            99999987654                   3446777732222349999999999999999999999999988765

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.97  E-value=6.3e-31  Score=234.91  Aligned_cols=165  Identities=19%  Similarity=0.217  Sum_probs=148.2

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcC--CeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALE--CHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS  277 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  277 (392)
                      +++++.++++++++..|+..|+++|+.++  |+++++| ++++                +.++.|..+.++..+++  ..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~----------------V~ss~G~~v~~d~~l~~--~~   79 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPE----------------HHSQLGMTVKTDGHVSE--VK   79 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSE----------------EEBTTCCEEECSEEGGG--GG
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCc----------------EEecCCcEEecCccccc--cc
Confidence            46789999999999999999999999876  8999999 7664                67788888999988887  45


Q ss_pred             CcCEEEEcCC-CChhhccCChHHHHHHHHHHHcCC-cEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCC
Q 016237          278 GYDALVVPGG-RAPEYLALNENVIALVKDFMEAKK-PVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPD  355 (392)
Q Consensus       278 ~~D~viipgg-~~~~~~~~~~~l~~~l~~~~~~g~-~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~  355 (392)
                      +||+|||||| .++..+..++.+.+||  ++++++ +|+++|+|+++|+++|||+||++||||...+.++..+.++.+. 
T Consensus        80 ~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~-  156 (236)
T 3bhn_A           80 EQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDL-  156 (236)
T ss_dssp             GCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSS-
T ss_pred             CCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCC-
Confidence            8999999999 6776678899999999  677777 9999999999999999999999999999999999888888543 


Q ss_pred             CCceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          356 PIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       356 ~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                         .+|.|||+|||+|+.++.||++++|+++.|+
T Consensus       157 ---~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~  187 (236)
T 3bhn_A          157 ---PLVIEGNIATAGGCLSLLYLVGWLAERLFDS  187 (236)
T ss_dssp             ---SEEEETTEEEECSGGGHHHHHHHHHHHHSCH
T ss_pred             ---cEEEeCCEEECCCHHHHHHHHHHHHHHhcCH
Confidence               5999999999999999999999999999875

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.97  E-value=2.6e-30  Score=232.10  Aligned_cols=190  Identities=18%  Similarity=0.255  Sum_probs=151.5

Q ss_pred             CccEEEEeCC------------CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccC-CCCC---ccccCC---C
Q 016237          201 DKRILFLCGD------------YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD-FEGD---QTYSEK---P  261 (392)
Q Consensus       201 ~~~v~ill~~------------~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~-~~~~---~~~~~~---~  261 (392)
                      |+||++++.+            |++..|+..|+++|+++|++|+++|+.|+. ..++.+... +.++   ......   .
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~   87 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTF-GWDEHSLTQEYLSKEDEKVLHSEHNHF   87 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCC-CBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCc-ccCcccccccccCHHHHHHHHhhhHHH
Confidence            5789999876            778999999999999999999999998875 222222110 0000   001111   1


Q ss_pred             CCcccc-cccccCCCCCCcCEEEEcCCCCh-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc------CCCCCce
Q 016237          262 GHNFTL-TANFESVDVSGYDALVVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA------GVLKGKK  333 (392)
Q Consensus       262 g~~i~~-~~~~~~~~~~~~D~viipgg~~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a------glL~g~~  333 (392)
                      +..+.. +..+++++..+||+||||||+++ ..++.++.+.+||+++++++|+|++||+|+++|+++      |||+||+
T Consensus        88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~  167 (247)
T 3n7t_A           88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT  167 (247)
T ss_dssp             HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred             HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence            223555 77899998899999999999997 458899999999999999999999999999999999      9999999


Q ss_pred             eecCchhHH-------------------HHHHcCCeeeCC-CCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhccccc
Q 016237          334 CTAYPAVKL-------------------NVLLAGASWLEP-DPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQVL  391 (392)
Q Consensus       334 ~T~~~~~~~-------------------~~~~~~~~~~~~-~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~~  391 (392)
                      +|+||..++                   .+++.|++|.+. .++ ..+|.|||+|||+|+.++.+|++++|+.|...++
T Consensus       168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~~~  246 (247)
T 3n7t_A          168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVN  246 (247)
T ss_dssp             ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhhcc
Confidence            999999754                   355689999874 112 2699999999999999999999999999987543

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.97  E-value=1.8e-30  Score=233.05  Aligned_cols=187  Identities=19%  Similarity=0.241  Sum_probs=149.3

Q ss_pred             CccEEEEeCC------------CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCC----CCCcccc---CCC
Q 016237          201 DKRILFLCGD------------YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDF----EGDQTYS---EKP  261 (392)
Q Consensus       201 ~~~v~ill~~------------~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~----~~~~~~~---~~~  261 (392)
                      |+||++++.+            |++..|+..|+++|+++|++|+++|+.|++ ..++.+....    .......   ++.
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGF-GWDEHYLPKSFIGGEDKMNFETKNSAF   81 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCC-CBCTTC--------------------C
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCC-CcCCccccccccCHHHHHHHHHhhHHH
Confidence            6788888863            777899999999999999999999999775 2332221100    0111111   123


Q ss_pred             CCcccccccccCCCCCCcCEEEEcCCCCh-hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc-------CCCCCce
Q 016237          262 GHNFTLTANFESVDVSGYDALVVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA-------GVLKGKK  333 (392)
Q Consensus       262 g~~i~~~~~~~~~~~~~~D~viipgg~~~-~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a-------glL~g~~  333 (392)
                      +..+..+..+++++..+||+||||||+++ ..+..++.+.+||+++++++|+|++||+|+++|+++       |||+||+
T Consensus        82 ~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~  161 (244)
T 3kkl_A           82 NKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKA  161 (244)
T ss_dssp             HHHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred             HHHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCce
Confidence            45678888999998889999999999986 458899999999999999999999999999999999       9999999


Q ss_pred             eecCchhHH-------------------HHHHcCCeeeCC-CCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhcc
Q 016237          334 CTAYPAVKL-------------------NVLLAGASWLEP-DPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGI  388 (392)
Q Consensus       334 ~T~~~~~~~-------------------~~~~~~~~~~~~-~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~  388 (392)
                      +|+||..++                   .++..|++|.+. .++ ..+|.|||+|||+|+.++.+|++++|++|..
T Consensus       162 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~  237 (244)
T 3kkl_A          162 ITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS  237 (244)
T ss_dssp             ECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC
T ss_pred             ecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhh
Confidence            999999754                   345678999873 122 2699999999999999999999999999864

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.97  E-value=1.8e-30  Score=234.24  Aligned_cols=187  Identities=19%  Similarity=0.278  Sum_probs=147.2

Q ss_pred             CccEEEEeC------------CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccC-CCCC---ccc---cCCC
Q 016237          201 DKRILFLCG------------DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHD-FEGD---QTY---SEKP  261 (392)
Q Consensus       201 ~~~v~ill~------------~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~-~~~~---~~~---~~~~  261 (392)
                      |+||++++.            +|++..|+..|+++|+++||+|+++|+++++ ..++.++.. +...   ...   .+..
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKF-GWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCC-CBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCCC-CcCcccccccccChHHHHHHHhhhHHH
Confidence            578999886            5778899999999999999999999999873 222222110 0000   000   0012


Q ss_pred             CCcccccccccCCCCCCcCEEEEcCCCChh-hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC-------CCCCce
Q 016237          262 GHNFTLTANFESVDVSGYDALVVPGGRAPE-YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG-------VLKGKK  333 (392)
Q Consensus       262 g~~i~~~~~~~~~~~~~~D~viipgg~~~~-~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag-------lL~g~~  333 (392)
                      +..+.++..+++++.++||+||||||+++. .+..++.+.+||+++++++|+|++||+|+++|+++|       ||+||+
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~  161 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKS  161 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcE
Confidence            445677888898877899999999999864 478899999999999999999999999999999999       999999


Q ss_pred             eecCchhHHH-------------------HHHcCCeeeCCC-CC-ceEEEcCCeEEccCCCChHHHHHHHHHHhcc
Q 016237          334 CTAYPAVKLN-------------------VLLAGASWLEPD-PI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGI  388 (392)
Q Consensus       334 ~T~~~~~~~~-------------------~~~~~~~~~~~~-~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~  388 (392)
                      +|+||..++.                   +++.++++.+.+ ++ ..+|.|||+|||+|+.++.+|++++|+++..
T Consensus       162 ~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          162 ITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             EeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            9999997665                   444589998420 00 2699999999999999999999999998853

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.97  E-value=9.2e-31  Score=224.66  Aligned_cols=161  Identities=17%  Similarity=0.228  Sum_probs=139.8

Q ss_pred             CCccEEEEeCC---C---CCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccC
Q 016237          200 SDKRILFLCGD---Y---MEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFES  273 (392)
Q Consensus       200 ~~~~v~ill~~---~---~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~  273 (392)
                      |.+++.+++++   +   ++..|+..      +++|+++++|++++.               .++++.|..+.++..+++
T Consensus         1 m~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~~~~   59 (175)
T 3cne_A            1 MAKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTK---------------EIKTNSGMVLIVDDVIAN   59 (175)
T ss_dssp             -CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSS---------------EEEBTTSCEEECSEEGGG
T ss_pred             CCcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCC---------------ceecCCCeEEEeccCHHH
Confidence            35789999999   8   66555544      789999999998531               267788999999999988


Q ss_pred             C--CCCCcCEEEEcCC--C-Chhhcc---CChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHH
Q 016237          274 V--DVSGYDALVVPGG--R-APEYLA---LNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVL  345 (392)
Q Consensus       274 ~--~~~~~D~viipgg--~-~~~~~~---~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~  345 (392)
                      .  ++++||+||||||  . ++..+.   .++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.++
T Consensus        60 ~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~  139 (175)
T 3cne_A           60 LKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQ  139 (175)
T ss_dssp             GTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCC
T ss_pred             hccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhh
Confidence            7  6679999999999  6 665555   789999999999999999999999999999999999999999999988887


Q ss_pred             HcCCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          346 LAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       346 ~~~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      .  +++.+.    .+|.|||+|||+|+.++.||+++++++|.
T Consensus       140 ~--~~~~~~----~~v~Dg~iiTs~g~~~~~d~al~li~~l~  175 (175)
T 3cne_A          140 N--GIATDE----KSEIDGNFFTAQDENTIWTMLPKVIEALK  175 (175)
T ss_dssp             S--SEEESS----SEEEETTEEEESSGGGGGGTHHHHHHHHC
T ss_pred             c--CEEeCC----CEEEeCCEEeCCChHHHHHHHHHHHHHhC
Confidence            6  778754    49999999999999999999999999873

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.96  E-value=3.3e-30  Score=237.79  Aligned_cols=185  Identities=19%  Similarity=0.198  Sum_probs=151.5

Q ss_pred             CccEEEEeCC--------------CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCC---CC
Q 016237          201 DKRILFLCGD--------------YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP---GH  263 (392)
Q Consensus       201 ~~~v~ill~~--------------~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---g~  263 (392)
                      .+||++++.+              |++..|+..|+++|+++||+|+++|+++++...++.++.  ..+..+.+..   |.
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~--~~~~~~~~~~~~~g~  125 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMP--HKDEKVMPFFEQHKS  125 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCC--TTCTTHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcccccccccc--cccHHHHHHHHhccc
Confidence            4689999875              699999999999999999999999999987554433321  0111111112   55


Q ss_pred             cccccccccCC-----CCCCcCEEEEcCCCChh-hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC----CCCCce
Q 016237          264 NFTLTANFESV-----DVSGYDALVVPGGRAPE-YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG----VLKGKK  333 (392)
Q Consensus       264 ~i~~~~~~~~~-----~~~~~D~viipgg~~~~-~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag----lL~g~~  333 (392)
                      .+.++..++++     +.++||+||||||+++. .++.++.+.+||+++++++|+|++||+|+++|++++    ||+||+
T Consensus       126 ~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          126 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             eecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCE
Confidence            67777778773     56799999999999876 588899999999999999999999999999999985    999999


Q ss_pred             eecCchhHHHH-------------------HHcCCeeeC---CCCCceEEEcCCeEEccCCCChHHHHHHHHHHhcccc
Q 016237          334 CTAYPAVKLNV-------------------LLAGASWLE---PDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLGIQV  390 (392)
Q Consensus       334 ~T~~~~~~~~~-------------------~~~~~~~~~---~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~~  390 (392)
                      +|+||...+.+                   +..|+++.+   +.   .+|+|||+|||+|+.++.+|++++|++|.+..
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~---~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~  281 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITG---RVHKDRKLLTGDSPFAANALGKLAAQEMLAAY  281 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSC---CEEEETTEEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCC---CEEEeCCEEECCCHHHHHHHHHHHHHHHhCch
Confidence            99999987654                   344888883   22   59999999999999999999999999998864

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.96  E-value=8.9e-30  Score=228.18  Aligned_cols=178  Identities=20%  Similarity=0.255  Sum_probs=144.7

Q ss_pred             CCEEEEEec-----CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCC-CCccccCCCCcccccccccCccccC------
Q 016237            8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDV-CPTAVHQSTGHQTYSETRGHNFALN------   75 (392)
Q Consensus         8 ~~kI~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~------   75 (392)
                      |+||+|+++     |||+..|+..|+++|+++||+|+++|+++++... +..+     + .++.++.|+.+.++      
T Consensus         6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s-----~-~~~~~~~g~~i~~~~~~~~~   79 (232)
T 1vhq_A            6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLT-----G-EAMTETRNVLIEAARITRGE   79 (232)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTT-----C-CBCSCCCBHHHHHTTTTTTC
T ss_pred             CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCccccccc-----c-cchhhhhhhhHHHHHhhhcC
Confidence            579999999     9999999999999999999999999998764211 1111     1 13456667777666      


Q ss_pred             -cCcCCCCCCCccEEEEcCCCCcc-----------cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccC-CeeEe
Q 016237           76 -ATFDEIDPSKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK-GRKCT  142 (392)
Q Consensus        76 -~~~~~~~~~~~D~iiipGG~~~~-----------~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~-g~~~T  142 (392)
                       ..++++++.+||+||||||+++.           .+..++.+++||+++++++++|++||+|+++|+++  |+ ||++|
T Consensus        80 ~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~T  157 (232)
T 1vhq_A           80 IRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLT  157 (232)
T ss_dssp             CEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEEC
T ss_pred             CCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEe
Confidence             78888877789999999998752           12248999999999999999999999999999999  79 99999


Q ss_pred             cC-C-CcHHHHHHCCCeEEcCCCcceeee-cCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          143 AY-P-PVKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       143 ~~-~-~~~~~l~~~~~~~~~~~~~~~~v~-dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                      +| | ...+.|++.|+.|++...+..+++ |||+|||+    ++++++++++.+.+..
T Consensus       158 th~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~  211 (232)
T 1vhq_A          158 IGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGID  211 (232)
T ss_dssp             CCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHH
Confidence            99 5 567888888888887532223554 59999997    8899999999988765

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.95  E-value=4.8e-29  Score=223.17  Aligned_cols=167  Identities=21%  Similarity=0.241  Sum_probs=136.0

Q ss_pred             CEEEEEec-----CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccC-------c
Q 016237            9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------A   76 (392)
Q Consensus         9 ~kI~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~   76 (392)
                      +||+|++.     |||+..|+..|+++|+++|++|+++|+++++...+.    ...+. ++.++.|+.+.++       .
T Consensus        24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~----~~~g~-~v~~s~g~~v~~d~~~~~~~~   98 (242)
T 3l3b_A           24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVD----HKKKE-SVGEVRNILVESARIARGSVY   98 (242)
T ss_dssp             CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEE----TTTTE-EESCCCBHHHHHHHHTTTCEE
T ss_pred             CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccc----cccCc-cccccCCeEEecchhccccCC
Confidence            79999998     999999999999999999999999999886432211    01111 4566778888777       7


Q ss_pred             CcCCCCCCCccEEEEcCCCCcc-c-----------ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc-ccCCeeEec
Q 016237           77 TFDEIDPSKYDGLVIPGGRAPE-Y-----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTA  143 (392)
Q Consensus        77 ~~~~~~~~~~D~iiipGG~~~~-~-----------~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag-ll~g~~~T~  143 (392)
                      +++++++.+||+||||||.+.. .           +..++.+.+||+++++++|+|++||+|+++|+++| ||+||++|+
T Consensus        99 ~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T~  178 (242)
T 3l3b_A           99 DIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTI  178 (242)
T ss_dssp             EGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEECC
T ss_pred             ChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEEe
Confidence            8999888899999999998642 1           25679999999999999999999999999999999 999999999


Q ss_pred             CCCcHHHHHHCCCeEEcCCCcceeeec--CceEecCCCCC
Q 016237          144 YPPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYEG  181 (392)
Q Consensus       144 ~~~~~~~l~~~~~~~~~~~~~~~~v~d--g~iiT~~g~~s  181 (392)
                      ||...+.++++|+.|++.+. ..+|+|  ||+|||++...
T Consensus       179 ~~~~~~~l~~~Ga~~~~~~~-~~vVvD~~g~liTs~a~~~  217 (242)
T 3l3b_A          179 GEDSNGLIDKMGGVHVDCPT-IKSVKDDVNRIFSCSAYMR  217 (242)
T ss_dssp             CC----CHHHHTCEECCCCT-TCCEEETTTTEEEECGGGS
T ss_pred             cCChHHHHHHCCCEEEcCCC-CeEEEECCCCEEECcCccc
Confidence            99988888889999988531 127778  99999998754

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.95  E-value=1.4e-28  Score=220.09  Aligned_cols=170  Identities=17%  Similarity=0.204  Sum_probs=136.8

Q ss_pred             CCCccEEEEeC-----CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCccccc-----
Q 016237          199 GSDKRILFLCG-----DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLT-----  268 (392)
Q Consensus       199 ~~~~~v~ill~-----~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-----  268 (392)
                      .|+++|++++.     ++++..|+..|+++|+++||+|+++|+++++.+.++.     ..+..+.++.|..+.++     
T Consensus        21 ~M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~-----~~g~~v~~s~g~~v~~d~~~~~   95 (242)
T 3l3b_A           21 SMALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDH-----KKKESVGEVRNILVESARIARG   95 (242)
T ss_dssp             ---CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEET-----TTTEEESCCCBHHHHHHHHTTT
T ss_pred             cccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCccccccc-----ccCccccccCCeEEecchhccc
Confidence            35589999998     9999999999999999999999999999886443221     22334566667777766     


Q ss_pred             --ccccCCCCCCcCEEEEcCCCChh-h-----------ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC-CCCCce
Q 016237          269 --ANFESVDVSGYDALVVPGGRAPE-Y-----------LALNENVIALVKDFMEAKKPVASICHGQQILAAAG-VLKGKK  333 (392)
Q Consensus       269 --~~~~~~~~~~~D~viipgg~~~~-~-----------~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag-lL~g~~  333 (392)
                        ..++++++++||+||||||++.. .           +..++.+.+||+++++++|+|++||+|+++|+++| ||+||+
T Consensus        96 ~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~  175 (242)
T 3l3b_A           96 SVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVK  175 (242)
T ss_dssp             CEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCE
T ss_pred             cCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCE
Confidence              67888888899999999998742 1           25689999999999999999999999999999999 999999


Q ss_pred             eecCchhHHHHHHcCCeeeCCCCCceEEEc--CCeEEccCCCC
Q 016237          334 CTAYPAVKLNVLLAGASWLEPDPIDRCFTD--GNLVSGAAWPG  374 (392)
Q Consensus       334 ~T~~~~~~~~~~~~~~~~~~~~~~~~vv~d--g~lvT~~g~~~  374 (392)
                      +|+||.....+++.|++|++... ..+|.|  ||+|||+++..
T Consensus       176 ~T~~~~~~~~l~~~Ga~~~~~~~-~~vVvD~~g~liTs~a~~~  217 (242)
T 3l3b_A          176 VTIGEDSNGLIDKMGGVHVDCPT-IKSVKDDVNRIFSCSAYMR  217 (242)
T ss_dssp             ECCCC----CHHHHTCEECCCCT-TCCEEETTTTEEEECGGGS
T ss_pred             EEecCChHHHHHHCCCEEEcCCC-CeEEEECCCCEEECcCccc
Confidence            99999988888888999987421 147888  99999998753

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.95  E-value=6.6e-28  Score=216.01  Aligned_cols=178  Identities=17%  Similarity=0.193  Sum_probs=143.6

Q ss_pred             CCccEEEEeC-----CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCC-CCCcccCCCCCccccCCCCCccccc-----
Q 016237          200 SDKRILFLCG-----DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDS-CPTAVHDFEGDQTYSEKPGHNFTLT-----  268 (392)
Q Consensus       200 ~~~~v~ill~-----~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i~~~-----  268 (392)
                      .|++++++++     ++++..|+..|+++|+++||+++++|+++++.+. ++.+      +..+.+..|..+.++     
T Consensus         5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s------~~~~~~~~g~~i~~~~~~~~   78 (232)
T 1vhq_A            5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLT------GEAMTETRNVLIEAARITRG   78 (232)
T ss_dssp             -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTT------CCBCSCCCBHHHHHTTTTTT
T ss_pred             cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCccccccc------ccchhhhhhhhHHHHHhhhc
Confidence            3678999999     9999999999999999999999999999875321 1111      123355566666666     


Q ss_pred             --ccccCCCCCCcCEEEEcCCCChh-hc----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCC-Ccee
Q 016237          269 --ANFESVDVSGYDALVVPGGRAPE-YL----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLK-GKKC  334 (392)
Q Consensus       269 --~~~~~~~~~~~D~viipgg~~~~-~~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~-g~~~  334 (392)
                        ..+++++.++||+||||||+++. .+          ..++.+.+||++++++||+|++||+|+++|+++  |+ ||++
T Consensus        79 ~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~  156 (232)
T 1vhq_A           79 EIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRL  156 (232)
T ss_dssp             CCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEE
T ss_pred             CCCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEE
Confidence              77888777789999999998752 12          258999999999999999999999999999999  79 9999


Q ss_pred             ecC-c-hhHHHHHHcCCeeeCCCCCceEEE-cCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          335 TAY-P-AVKLNVLLAGASWLEPDPIDRCFT-DGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       335 T~~-~-~~~~~~~~~~~~~~~~~~~~~vv~-dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      |+| | ..++.++..|+++.+..+...+++ |||+|||+    +.||++++|+++.|.
T Consensus       157 Tth~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~  210 (232)
T 1vhq_A          157 TIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGI  210 (232)
T ss_dssp             CCCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHH
T ss_pred             eccCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCH
Confidence            999 4 778888888899887521112444 59999997    788999999999876

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.85  E-value=8.2e-22  Score=199.25  Aligned_cols=152  Identities=17%  Similarity=0.228  Sum_probs=132.5

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+||++||++..|+..|+++|+++|++++++|++++                .+.++.|..+.++..++++++.+||
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg----------------~V~ss~G~~v~~d~~l~~v~~~~yD  597 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMVD  597 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGSS
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC----------------ceecCCCceEecccccccCCcccCC
Confidence            579999999999999999999999999999999999876                4778889999999999998878999


Q ss_pred             EEEEcCCC-CcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-cccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           88 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        88 ~iiipGG~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-gll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      +||||||. ++..+..++.+++||+++++++|+|++||+|+++|+++ ||.+-             ++.++     .   
T Consensus       598 aViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L-------------~~aGa-----~---  656 (715)
T 1sy7_A          598 AIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQV-------------TVSSE-----A---  656 (715)
T ss_dssp             EEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTS-------------CCCCS-----S---
T ss_pred             EEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhH-------------HhcCC-----C---
Confidence            99999996 45557789999999999999999999999999999999 98322             22232     2   


Q ss_pred             eeeecCceEecCCCC------------ChHHHHHHHHHHhcCC
Q 016237          166 ACVVDGNIITGATYE------------GHPEFIRLFLKALGGT  196 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~------------s~~~~~~~~i~~l~~~  196 (392)
                      .+|+|||+||++|+.            +..+++..+++.+...
T Consensus       657 ~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~h  699 (715)
T 1sy7_A          657 EVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQH  699 (715)
T ss_dssp             SCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHTC
T ss_pred             cEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHcC
Confidence            288999999999986            6778999999888653

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.82  E-value=2.5e-20  Score=188.49  Aligned_cols=151  Identities=14%  Similarity=0.263  Sum_probs=130.9

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|+|+++++++..|+..++++|+.+||+++++|+++++                +.++.|..+.++..+++++..+||
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~----------------V~ss~G~~v~~d~~l~~v~~~~yD  597 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSK----------------VTAANGSTVQPHHHLEGFRSTMVD  597 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSC----------------EEBTTSCEECCSEETTTCCGGGSS
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCc----------------eecCCCceEecccccccCCcccCC
Confidence            4689999999999999999999999999999999999875                667788889999999988777999


Q ss_pred             EEEEcCCC-ChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc-CCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237          281 ALVVPGGR-APEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA-GVLKGKKCTAYPAVKLNVLLAGASWLEPDPID  358 (392)
Q Consensus       281 ~viipgg~-~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a-glL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~  358 (392)
                      +||||||. +...+..++.+++||+++++++|+|++||+|+++|+++ ||.+-+             +.++     .   
T Consensus       598 aViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L~-------------~aGa-----~---  656 (715)
T 1sy7_A          598 AIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVT-------------VSSE-----A---  656 (715)
T ss_dssp             EEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSC-------------CCCS-----S---
T ss_pred             EEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhHH-------------hcCC-----C---
Confidence            99999996 45567889999999999999999999999999999999 984322             2222     2   


Q ss_pred             eEEEcCCeEEccCCC------------ChHHHHHHHHHHhcc
Q 016237          359 RCFTDGNLVSGAAWP------------GHPEFISQLMALLGI  388 (392)
Q Consensus       359 ~vv~dg~lvT~~g~~------------~~~~~~~~li~~l~~  388 (392)
                      .+|.||++||++|+.            +..+++.++++.|..
T Consensus       657 ~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          657 EVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             SCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             cEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence            489999999999985            677899999988753

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.77  E-value=9.6e-19  Score=175.00  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=107.1

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      .+|||+||+.|||+..|+..++++|+++|++|+++|++++                .+.++.|..+.+|.+++++++.+|
T Consensus       599 ~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g----------------~V~gs~G~~V~aD~t~~~v~s~~f  662 (753)
T 3ttv_A          599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTV  662 (753)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGC
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC----------------eEEeCCCCEEecccchhhCCCcCC
Confidence            3689999999999999999999999999999999999876                588899999999999999998899


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCccc
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  136 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll  136 (392)
                      |+|||||| ++..+..++.+++||+++++++|+|++||+|+++|+++||-
T Consensus       663 DALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~  711 (753)
T 3ttv_A          663 DAVIVPCG-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA  711 (753)
T ss_dssp             SEEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred             CEEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence            99999999 88888999999999999999999999999999999999974

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.69  E-value=4.4e-17  Score=163.09  Aligned_cols=114  Identities=17%  Similarity=0.227  Sum_probs=106.7

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      .+.++|+|++.++++..|+..++++|+++|++|+++|+++++                +.++.|..+.+|..+++++..+
T Consensus       598 i~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~----------------V~gs~G~~V~aD~t~~~v~s~~  661 (753)
T 3ttv_A          598 VKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGE----------------VTADDGTVLPIAATFAGAPSLT  661 (753)
T ss_dssp             CTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSE----------------EECTTSCEEECCEETTTSCGGG
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCe----------------EEeCCCCEEecccchhhCCCcC
Confidence            346899999999999999999999999999999999998764                7788899999999999998889


Q ss_pred             cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCC
Q 016237          279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVL  329 (392)
Q Consensus       279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL  329 (392)
                      ||+|||||| ++..+..++.+++||+++++++|+|++||+|+++|+++||-
T Consensus       662 fDALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~  711 (753)
T 3ttv_A          662 VDAVIVPCG-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA  711 (753)
T ss_dssp             CSEEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred             CCEEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence            999999999 88889999999999999999999999999999999999984

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.61  E-value=1.4e-15  Score=151.91  Aligned_cols=131  Identities=18%  Similarity=0.210  Sum_probs=112.2

Q ss_pred             CCCEEEEEec--CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237            7 GKRSVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS   84 (392)
Q Consensus         7 ~~~kI~ill~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   84 (392)
                      +++||+||+.  +||+..|+..+.++|+++|.+|.++++..+                .         .+|.+++++++.
T Consensus       528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g----------------~---------~vD~t~~~~~s~  582 (688)
T 2iuf_A          528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA----------------N---------NVDETYSASDAV  582 (688)
T ss_dssp             TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC----------------T---------TCCEESTTCCGG
T ss_pred             CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC----------------c---------ccccchhcCCcc
Confidence            3689999999  999999999999999999999999998642                0         568889998889


Q ss_pred             CccEEEEcCCC-C----------------cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCc
Q 016237           85 KYDGLVIPGGR-A----------------PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPV  147 (392)
Q Consensus        85 ~~D~iiipGG~-~----------------~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~  147 (392)
                      +||+||||||. +                +..|..++.++++|+++++++|+|++||+|+++|..+|+..          
T Consensus       583 ~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aGi~~----------  652 (688)
T 2iuf_A          583 QFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQISS----------  652 (688)
T ss_dssp             GCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTTCCT----------
T ss_pred             ccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcCCCC----------
Confidence            99999999995 5                56688999999999999999999999999999999999853          


Q ss_pred             HHHHHHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhcC
Q 016237          148 KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (392)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~  195 (392)
                                           .|+++||+.++  .-+++..+++.+..
T Consensus       653 ---------------------~d~GVvts~~~--~~~f~~~fi~~la~  677 (688)
T 2iuf_A          653 ---------------------ERQGVYTGKNA--GDAFAKDIKSGLST  677 (688)
T ss_dssp             ---------------------TSTTEEEESSS--SHHHHHHHHHHHHH
T ss_pred             ---------------------CCCCEEEcCCc--cHHHHHHHHHHHHh
Confidence                                 24678887776  44577777776654

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.56  E-value=7.1e-15  Score=146.40  Aligned_cols=105  Identities=17%  Similarity=0.148  Sum_probs=94.7

Q ss_pred             CCCEEEEEecCC-CCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            7 GKRSVLLLCGDY-MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         7 ~~~kI~ill~~g-~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      ++|||+||+.|| |+..|+..+.++|+++|++|+++++..+                     .|    +|.+++++++.+
T Consensus       536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g---------------------~G----vD~t~~~~~s~~  590 (688)
T 3ej6_A          536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA---------------------SG----VDQTYSAADATA  590 (688)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC---------------------TT----CCEETTTCCGGG
T ss_pred             cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC---------------------CC----cccCcccCChhc
Confidence            468999999999 9999999999999999999999998752                     13    688899999999


Q ss_pred             ccEEEEcCCCCc--------ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCccc
Q 016237           86 YDGLVIPGGRAP--------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  136 (392)
Q Consensus        86 ~D~iiipGG~~~--------~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll  136 (392)
                      ||+|+||||...        ..|+.++.+++|++++++++|+|++||+|+++|..+|+-
T Consensus       591 fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI~  649 (688)
T 3ej6_A          591 FDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSIGVE  649 (688)
T ss_dssp             CSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTCC
T ss_pred             CcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHcCCC
Confidence            999999999632        558889999999999999999999999999999999973

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.51  E-value=4.9e-14  Score=140.89  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             CccEEEEeC--CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          201 DKRILFLCG--DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       201 ~~~v~ill~--~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      .+||+|++.  ++++..|+..+.+.|+++|.+|.++++..+.                         .+|..+++.+..+
T Consensus       529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~-------------------------~vD~t~~~~~s~~  583 (688)
T 2iuf_A          529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXAN-------------------------NVDETYSASDAVQ  583 (688)
T ss_dssp             TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCT-------------------------TCCEESTTCCGGG
T ss_pred             CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCc-------------------------ccccchhcCCccc
Confidence            578999999  9999999999999999999999999996331                         6688888888889


Q ss_pred             cCEEEEcCCC-C----------------hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhH
Q 016237          279 YDALVVPGGR-A----------------PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVK  341 (392)
Q Consensus       279 ~D~viipgg~-~----------------~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~  341 (392)
                      ||+||||||. +                +..|..+++++++|++++++||+|+|||+|+++|..+|+..           
T Consensus       584 fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aGi~~-----------  652 (688)
T 2iuf_A          584 FDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQISS-----------  652 (688)
T ss_dssp             CSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTTCCT-----------
T ss_pred             cCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcCCCC-----------
Confidence            9999999995 4                56688999999999999999999999999999999999853           


Q ss_pred             HHHHHcCCeeeCCCCCceEEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          342 LNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                                          .|+.+||++++  ..+++..+++.|.
T Consensus       653 --------------------~d~GVvts~~~--~~~f~~~fi~~la  676 (688)
T 2iuf_A          653 --------------------ERQGVYTGKNA--GDAFAKDIKSGLS  676 (688)
T ss_dssp             --------------------TSTTEEEESSS--SHHHHHHHHHHHH
T ss_pred             --------------------CCCCEEEcCCc--cHHHHHHHHHHHH
Confidence                                23567777775  4556677776654

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.44  E-value=3.5e-13  Score=134.29  Aligned_cols=105  Identities=19%  Similarity=0.206  Sum_probs=94.7

Q ss_pred             CCccEEEEeCCC-CCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          200 SDKRILFLCGDY-MEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~-~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      +.+||+|++.++ ++..|+..+++.|+++|.+++++++..+                     .|    +|..+++++..+
T Consensus       536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g---------------------~G----vD~t~~~~~s~~  590 (688)
T 3ej6_A          536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA---------------------SG----VDQTYSAADATA  590 (688)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC---------------------TT----CCEETTTCCGGG
T ss_pred             cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC---------------------CC----cccCcccCChhc
Confidence            468999999999 9999999999999999999999999743                     12    688899998899


Q ss_pred             cCEEEEcCCCCh--------hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCC
Q 016237          279 YDALVVPGGRAP--------EYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVL  329 (392)
Q Consensus       279 ~D~viipgg~~~--------~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL  329 (392)
                      ||+||||||...        +.|..++.+++||+++++++|+|++||+|+++|.++|+-
T Consensus       591 fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI~  649 (688)
T 3ej6_A          591 FDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSIGVE  649 (688)
T ss_dssp             CSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTCC
T ss_pred             CcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHcCCC
Confidence            999999999643        568999999999999999999999999999999999984

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.06  E-value=1.5e-10  Score=101.66  Aligned_cols=93  Identities=23%  Similarity=0.318  Sum_probs=74.5

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+.+++++.  ...+.+.|+++|+++.+++..                                  +  +..+||+
T Consensus         3 ~~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~----------------------------------~--~~~~~d~   44 (213)
T 3d54_D            3 PRACVVVYPGSNC--DRDAYHALEINGFEPSYVGLD----------------------------------D--KLDDYEL   44 (213)
T ss_dssp             CEEEEECCTTEEE--HHHHHHHHHTTTCEEEEECTT----------------------------------C--CCSSCSE
T ss_pred             cEEEEEEcCCCCc--cHHHHHHHHHCCCEEEEEecC----------------------------------C--CcccCCE
Confidence            6899999998874  134589999999999887632                                  1  1237999


Q ss_pred             EEEcCCCCcc-c-----ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCe
Q 016237           89 LVIPGGRAPE-Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  139 (392)
Q Consensus        89 iiipGG~~~~-~-----~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~  139 (392)
                      ||||||.+.. .     +..++.+.++|+++++++++|.+||.|.++|+.+|+|+|+
T Consensus        45 lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           45 IILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             EEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             EEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence            9999997532 2     1235678999999999999999999999999999999985

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.01  E-value=5e-10  Score=98.27  Aligned_cols=95  Identities=23%  Similarity=0.351  Sum_probs=75.3

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      ||++|+++.+++++.  ...+.+.|+++|+++.++++.                                  +  ...++
T Consensus         1 m~~~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~----------------------------------~--~~~~~   42 (213)
T 3d54_D            1 MKPRACVVVYPGSNC--DRDAYHALEINGFEPSYVGLD----------------------------------D--KLDDY   42 (213)
T ss_dssp             CCCEEEEECCTTEEE--HHHHHHHHHTTTCEEEEECTT----------------------------------C--CCSSC
T ss_pred             CCcEEEEEEcCCCCc--cHHHHHHHHHCCCEEEEEecC----------------------------------C--CcccC
Confidence            467899999988763  134589999999998887531                                  1  23479


Q ss_pred             CEEEEcCCCCh-hh-----ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCc
Q 016237          280 DALVVPGGRAP-EY-----LALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGK  332 (392)
Q Consensus       280 D~viipgg~~~-~~-----~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~  332 (392)
                      |.||||||.+. +.     +..++.+.+||+++++++++|.+||.|.++|+.+|+|.|+
T Consensus        43 d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           43 ELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             SEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             CEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence            99999998753 22     2245778999999999999999999999999999999884

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.42  E-value=6e-07  Score=80.25  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +|||+||..+.++  ........|++.|++++++....+.                       .+     ..  +..+||
T Consensus         3 ~~~vliiqh~~~e--~~~~i~~~l~~~G~~v~v~~~~~~~-----------------------~~-----p~--~~~~~d   50 (250)
T 3m3p_A            3 LKPVMIIQFSASE--GPGHFGDFLAGEHIPFQVLRMDRSD-----------------------PL-----PA--EIRDCS   50 (250)
T ss_dssp             CCCEEEEESSSSC--CCHHHHHHHHHTTCCEEEEEGGGTC-----------------------CC-----CS--CGGGSS
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHCCCeEEEEeccCCC-----------------------cC-----cC--ccccCC
Confidence            4579999988877  4555567799999999998754220                       00     11  234799


Q ss_pred             EEEEcCCCCc-cc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||||||... .. ........++|+++.+.++||.+||.|.++|+.+
T Consensus        51 ~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           51 GLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             EEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            9999999742 21 2223567899999999999999999999999976

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.40  E-value=3.3e-07  Score=79.02  Aligned_cols=85  Identities=24%  Similarity=0.359  Sum_probs=62.6

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+-+.    ..+....+.|+++|+++.++++.                                  ++  ..+||+
T Consensus         2 m~I~il~~~----~~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~d~   41 (196)
T 2nv0_A            2 LTIGVLGLQ----GAVREHIHAIEACGAAGLVVKRP----------------------------------EQ--LNEVDG   41 (196)
T ss_dssp             CEEEEECSS----SCCHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCSE
T ss_pred             cEEEEEEcc----CCcHHHHHHHHHCCCEEEEeCCh----------------------------------HH--HhhCCE
Confidence            589999752    13344568999999988877531                                  11  236999


Q ss_pred             EEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||....  .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        42 iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           42 LILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             EEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            9999996421  12233456889999999999999999999999986

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.40  E-value=3.4e-07  Score=80.43  Aligned_cols=86  Identities=22%  Similarity=0.362  Sum_probs=64.0

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+|+.+++    .+....+.|+++|+++.+++..                                  ++  ..+||
T Consensus        23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~D   62 (219)
T 1q7r_A           23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS----------------------------------EQ--LEGLD   62 (219)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG----------------------------------GG--GTTCS
T ss_pred             CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH----------------------------------HH--HhhCC
Confidence            46899997644    2334568999999988887531                                  12  23699


Q ss_pred             EEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+|||.+..  .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            99999997422  12224456789999999999999999999999975

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.36  E-value=2e-06  Score=76.41  Aligned_cols=93  Identities=17%  Similarity=0.257  Sum_probs=68.9

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||++|..+.++  ......+.|.+.|++++++....+.                             .+.+ +..+||+
T Consensus         1 m~i~vi~h~~~e--~~g~~~~~l~~~g~~~~~~~~~~~~-----------------------------~~p~-~~~~~d~   48 (236)
T 3l7n_A            1 MRIHFILHETFE--APGAYLAWAALRGHDVSMTKVYRYE-----------------------------KLPK-DIDDFDM   48 (236)
T ss_dssp             CEEEEEECCTTS--CCHHHHHHHHHTTCEEEEEEGGGTC-----------------------------CCCS-CGGGCSE
T ss_pred             CeEEEEeCCCCC--CchHHHHHHHHCCCeEEEEeeeCCC-----------------------------CCCC-CccccCE
Confidence            489999988887  4555567899999999988764220                             1111 2347999


Q ss_pred             EEEcCCCCc-ccccCC------HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAP-EYLAMN------DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~-~~~~~~------~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |||+||.+. .....+      ....++|+++.++++||.+||.|.++|+.+
T Consensus        49 lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           49 LILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             EEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             EEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence            999999753 211111      347899999999999999999999999976

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.30  E-value=6.9e-07  Score=77.82  Aligned_cols=86  Identities=20%  Similarity=0.307  Sum_probs=63.6

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+-+++    .+....+.|+++|.++.+++..                                  +++  .+||
T Consensus        20 ~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~l--~~~d   59 (208)
T 2iss_D           20 HMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP----------------------------------EQL--DMVD   59 (208)
T ss_dssp             CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG----------------------------------GGG--GGCS
T ss_pred             CcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh----------------------------------HHH--hhCC
Confidence            46899996522    5666788999999988887531                                  112  2699


Q ss_pred             EEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|++|||.....  +..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        60 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           60 GLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             EEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             EEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            999999953211  2223346789999999999999999999999976

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.28  E-value=3.2e-06  Score=75.48  Aligned_cols=94  Identities=19%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ++++.++....++  ........|++.|++++++....+.                       .+.     +  +..+||
T Consensus         3 ~~~vliiqh~~~e--~~~~i~~~l~~~G~~v~v~~~~~~~-----------------------~~p-----~--~~~~~d   50 (250)
T 3m3p_A            3 LKPVMIIQFSASE--GPGHFGDFLAGEHIPFQVLRMDRSD-----------------------PLP-----A--EIRDCS   50 (250)
T ss_dssp             CCCEEEEESSSSC--CCHHHHHHHHHTTCCEEEEEGGGTC-----------------------CCC-----S--CGGGSS
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHCCCeEEEEeccCCC-----------------------cCc-----C--ccccCC
Confidence            5678888777766  6777778899999999988764221                       000     1  234799


Q ss_pred             EEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||||||....  ..+....+.++|+++.+.++||.+||.|.++|+.+
T Consensus        51 ~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           51 GLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             EEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            99999998531  13334578899999999999999999999999987

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.25  E-value=3.1e-06  Score=73.14  Aligned_cols=86  Identities=24%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+-+ ++.  .+....+.|+++|.++.+++..                                  ++  ..++|+
T Consensus         3 ~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~d~   43 (200)
T 1ka9_H            3 MKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP----------------------------------KA--HEEADL   43 (200)
T ss_dssp             CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST----------------------------------TS--CSSCSE
T ss_pred             cEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh----------------------------------HH--cccCCE
Confidence            58988843 322  4455689999999998887521                                  11  236999


Q ss_pred             EEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||..+..   -..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        44 lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           44 LVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             EEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             EEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence            99999533211   1123557899999999999999999999999987

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.22  E-value=2.7e-06  Score=91.70  Aligned_cols=100  Identities=15%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+|+.++|.+  .......+|+++|+++.++..+.                          +..+  -.  ...+||
T Consensus      1047 ~pkVaIi~~~G~N--~~~~~~~A~~~aG~~~~~v~~~d--------------------------l~~~--~~--~l~~~d 1094 (1303)
T 3ugj_A         1047 RPKVAVLREQGVN--SHVEMAAAFHRAGFDAIDVHMSD--------------------------LLGG--RI--GLGNFH 1094 (1303)
T ss_dssp             CCEEEEEECTTCC--CHHHHHHHHHHTTCEEEEEEHHH--------------------------HHTT--SC--CGGGCS
T ss_pred             CCEEEEEecCCcC--CHHHHHHHHHHhCCceEEEeecc--------------------------cccC--cc--cHhhCC
Confidence            4589999999998  34456678889999988764210                          0000  01  234799


Q ss_pred             EEEEcCCCCc-cc----------ccCCHHHHHHHHHHH-hCCCeEEEEchhhHHhhcC-cccCCe
Q 016237           88 GLVIPGGRAP-EY----------LAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA-DVVKGR  139 (392)
Q Consensus        88 ~iiipGG~~~-~~----------~~~~~~l~~~l~~~~-~~~~~i~aic~G~~~La~a-gll~g~  139 (392)
                      .|++|||.+. +.          ...++.+.+.+++++ ++++++.+||+|.++|.++ |||.|.
T Consensus      1095 ~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1095 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             EEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             EEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence            9999999642 21          245677888899876 5799999999999999999 999986

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.20  E-value=7.5e-06  Score=72.64  Aligned_cols=93  Identities=17%  Similarity=0.315  Sum_probs=69.4

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      ++|+++..+.++  .+..+.+.+++.|++++++....+.                             .+.+ +..+||+
T Consensus         1 m~i~vi~h~~~e--~~g~~~~~l~~~g~~~~~~~~~~~~-----------------------------~~p~-~~~~~d~   48 (236)
T 3l7n_A            1 MRIHFILHETFE--APGAYLAWAALRGHDVSMTKVYRYE-----------------------------KLPK-DIDDFDM   48 (236)
T ss_dssp             CEEEEEECCTTS--CCHHHHHHHHHTTCEEEEEEGGGTC-----------------------------CCCS-CGGGCSE
T ss_pred             CeEEEEeCCCCC--CchHHHHHHHHCCCeEEEEeeeCCC-----------------------------CCCC-CccccCE
Confidence            367777777776  6677778899999999988764210                             1111 2347999


Q ss_pred             EEEcCCCCh-hh----ccCC--hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAP-EY----LALN--ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~-~~----~~~~--~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |||+||.+. ..    .+.-  ....++|+++.++++||.+||.|.++|+.+
T Consensus        49 lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           49 LILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             EEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             EEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence            999999864 21    2222  348899999999999999999999999987

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.13  E-value=3.1e-06  Score=72.88  Aligned_cols=86  Identities=23%  Similarity=0.278  Sum_probs=62.2

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+++.++-+.+    .+....+.|+++|+++.++++.                                  ++  ..++|
T Consensus         1 ~m~I~il~~~~----~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~d   40 (196)
T 2nv0_A            1 MLTIGVLGLQG----AVREHIHAIEACGAAGLVVKRP----------------------------------EQ--LNEVD   40 (196)
T ss_dssp             CCEEEEECSSS----CCHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCS
T ss_pred             CcEEEEEEccC----CcHHHHHHHHHCCCEEEEeCCh----------------------------------HH--HhhCC
Confidence            35677775421    3444568999999887776431                                  11  23689


Q ss_pred             EEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .|++|||....  .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        41 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           41 GLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            99999997532  23334566899999999999999999999999976

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.13  E-value=2.8e-06  Score=72.75  Aligned_cols=85  Identities=24%  Similarity=0.289  Sum_probs=64.1

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      ++|+|+..++    .+....+.|+++|+++.+++..                                  ++  ..++|+
T Consensus         3 p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~dg   42 (191)
T 2ywd_A            3 GVVGVLALQG----DFREHKEALKRLGIEAKEVRKK----------------------------------EH--LEGLKA   42 (191)
T ss_dssp             CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG----------------------------------GG--GTTCSE
T ss_pred             cEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh----------------------------------hh--hccCCE
Confidence            4799998754    4567889999999887776421                                  01  236899


Q ss_pred             EEEcCCCC--cccccCCHHHHHHHHHHHhCC-CeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRA--PEYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~--~~~~~~~~~l~~~l~~~~~~~-~~i~aic~G~~~La~a  133 (392)
                      |++|||..  ...+..+..+.++|+++.+++ +||.+||.|.++|+.+
T Consensus        43 lil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           43 LIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             EEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             EEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            99999952  122322356789999999999 9999999999999976

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.09  E-value=4.4e-06  Score=73.27  Aligned_cols=86  Identities=27%  Similarity=0.366  Sum_probs=63.0

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|+|+.+.+    .+....+.|+++|+++.++++.                                  ++  .+++|
T Consensus        23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~D   62 (219)
T 1q7r_A           23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS----------------------------------EQ--LEGLD   62 (219)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG----------------------------------GG--GTTCS
T ss_pred             CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH----------------------------------HH--HhhCC
Confidence            45677775533    2344568899999888777531                                  11  23689


Q ss_pred             EEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+|||.+..  .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            99999997532  23335566899999999999999999999999976

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=98.05  E-value=4.1e-06  Score=73.92  Aligned_cols=85  Identities=19%  Similarity=0.286  Sum_probs=62.7

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhC---CCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCC
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSK   85 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   85 (392)
                      ++|+|+.+++.    +....+.|+++   |.++.+++..                                  +++  .+
T Consensus         4 ~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~----------------------------------~~l--~~   43 (227)
T 2abw_A            4 ITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRNV----------------------------------HDL--GL   43 (227)
T ss_dssp             EEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECSH----------------------------------HHH--HT
T ss_pred             cEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcCc----------------------------------ccc--cc
Confidence            57999987642    34568888888   8776665421                                  111  26


Q ss_pred             ccEEEEcCCCCc-c-cccCC--HHHHHHHHHHHhC-CCeEEEEchhhHHhhcC
Q 016237           86 YDGLVIPGGRAP-E-YLAMN--DSVIDLVRKFSNS-GKTIASICHGQLILAAA  133 (392)
Q Consensus        86 ~D~iiipGG~~~-~-~~~~~--~~l~~~l~~~~~~-~~~i~aic~G~~~La~a  133 (392)
                      +|+||+|||... . .+..+  ..+.++|+++.++ ++||.+||.|.++|+.+
T Consensus        44 ~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           44 CDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             CSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             CCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence            899999999632 1 22233  5689999999999 99999999999999986

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=98.04  E-value=7.3e-06  Score=70.09  Aligned_cols=86  Identities=16%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+|+=+.+..   ...+.+.|+++|.++.++....                               .++++...+||+|+
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~-------------------------------~~~~~~~~~~dgli   48 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGII   48 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEE
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC-------------------------------ChHHhcccCCCEEE
Confidence            6666554333   5577899999999998876531                               11222223699999


Q ss_pred             EcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           91 IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        91 ipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|||..+.   +...+.++++++.++++|+.+||.|.++|+.+
T Consensus        49 l~Gg~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           49 FSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             ECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             ECCCCChh---hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            99997322   24556888987778999999999999999986

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=97.99  E-value=1.2e-05  Score=69.39  Aligned_cols=87  Identities=20%  Similarity=0.254  Sum_probs=61.8

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      +++|+++-+ +..  .+....+.|+++|.++.+++..                                  ++  ..++|
T Consensus         2 ~~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~d   42 (200)
T 1ka9_H            2 RMKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP----------------------------------KA--HEEAD   42 (200)
T ss_dssp             -CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST----------------------------------TS--CSSCS
T ss_pred             ccEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh----------------------------------HH--cccCC
Confidence            356766633 222  4556789999999888876421                                  01  23689


Q ss_pred             EEEEcCCCCh-hhcc--CChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAP-EYLA--LNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~-~~~~--~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+||+..+ ..+.  .+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        43 ~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           43 LLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             EEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             EEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence            9999995433 2211  12558899999999999999999999999998

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.95  E-value=1.5e-05  Score=68.08  Aligned_cols=86  Identities=19%  Similarity=0.314  Sum_probs=61.1

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV  283 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi  283 (392)
                      ++++-+.+..   ...+.+.|+++|+++.++....                               .++++...++|.|+
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~-------------------------------~~~~~~~~~~dgli   48 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGII   48 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEE
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC-------------------------------ChHHhcccCCCEEE
Confidence            4444443332   5578899999999988886531                               11121113689999


Q ss_pred             EcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          284 VPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       284 ipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +|||..+.   ....+.++++++.++++|+.+||.|.++|+.+
T Consensus        49 l~Gg~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           49 FSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             ECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             ECCCCChh---hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            99997332   24557889987778999999999999999987

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=97.94  E-value=1.8e-05  Score=85.46  Aligned_cols=100  Identities=14%  Similarity=0.211  Sum_probs=73.8

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..+++|+.++|.+  ........|+++|+++..+..+                              +..-......+||
T Consensus      1047 ~pkVaIi~~~G~N--~~~~~~~A~~~aG~~~~~v~~~------------------------------dl~~~~~~l~~~d 1094 (1303)
T 3ugj_A         1047 RPKVAVLREQGVN--SHVEMAAAFHRAGFDAIDVHMS------------------------------DLLGGRIGLGNFH 1094 (1303)
T ss_dssp             CCEEEEEECTTCC--CHHHHHHHHHHTTCEEEEEEHH------------------------------HHHTTSCCGGGCS
T ss_pred             CCEEEEEecCCcC--CHHHHHHHHHHhCCceEEEeec------------------------------ccccCcccHhhCC
Confidence            4589999999988  4455677888999987776321                              0000111235799


Q ss_pred             EEEEcCCCCh-hh----------ccCChHHHHHHHHHH-HcCCcEEEEehHHHHHHHc-CCCCCc
Q 016237          281 ALVVPGGRAP-EY----------LALNENVIALVKDFM-EAKKPVASICHGQQILAAA-GVLKGK  332 (392)
Q Consensus       281 ~viipgg~~~-~~----------~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~~La~a-glL~g~  332 (392)
                      .|++|||... +.          ...++.+.+.+++++ ++++++.+||+|.++|.++ |||.|.
T Consensus      1095 ~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1095 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             EEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             EEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence            9999999642 22          234577888899876 5799999999999999999 999986

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=97.93  E-value=1.2e-05  Score=69.94  Aligned_cols=86  Identities=21%  Similarity=0.261  Sum_probs=62.4

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|+++.+.    ..+....+.|++.|+++.++++.                                  ++  ..++|
T Consensus        20 ~~~I~ii~~~----~~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~d   59 (208)
T 2iss_D           20 HMKIGVLGVQ----GDVREHVEALHKLGVETLIVKLP----------------------------------EQ--LDMVD   59 (208)
T ss_dssp             CCEEEEECSS----SCHHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCS
T ss_pred             CcEEEEEECC----CchHHHHHHHHHCCCEEEEeCCh----------------------------------HH--HhhCC
Confidence            4567777542    25666788888899888777431                                  01  12689


Q ss_pred             EEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+|||....  .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        60 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           60 GLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             EEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             EEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            99999985321  12334456899999999999999999999999987

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.91  E-value=1.2e-05  Score=68.71  Aligned_cols=86  Identities=24%  Similarity=0.282  Sum_probs=63.1

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++|.|+...+    .+....+.|+++|+++.+++..                                  ++  .+++|
T Consensus         2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~d   41 (191)
T 2ywd_A            2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKK----------------------------------EH--LEGLK   41 (191)
T ss_dssp             -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG----------------------------------GG--GTTCS
T ss_pred             CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh----------------------------------hh--hccCC
Confidence            35788876653    4567889999999877666421                                  01  23689


Q ss_pred             EEEEcCCCCh--hhccCChHHHHHHHHHHHcC-CcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAP--EYLALNENVIALVKDFMEAK-KPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~--~~~~~~~~l~~~l~~~~~~g-~~i~aiC~G~~~La~a  326 (392)
                      .|++|||...  ..+..+..+.++|+++.+++ +||.+||.|.++|+.+
T Consensus        42 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           42 ALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             EEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             EEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            9999999532  22333456789999999999 9999999999999987

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.86  E-value=6.8e-06  Score=71.56  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+|+=|   -.--+......|++.|+++.++..                                  .+++  .++|.
T Consensus         3 ~~I~iiD~---g~~n~~si~~al~~~G~~~~v~~~----------------------------------~~~l--~~~D~   43 (211)
T 4gud_A            3 QNVVIIDT---GCANISSVKFAIERLGYAVTISRD----------------------------------PQVV--LAADK   43 (211)
T ss_dssp             CCEEEECC---CCTTHHHHHHHHHHTTCCEEEECC----------------------------------HHHH--HHCSE
T ss_pred             CEEEEEEC---CCChHHHHHHHHHHCCCEEEEECC----------------------------------HHHH--hCCCE
Confidence            57888743   223456788899999999887531                                  1111  25799


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||+||+..+......-....+++...++++||.+||.|.++|+.+
T Consensus        44 lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           44 LFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             EEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             EEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            999996543321122223345777788999999999999999876

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.85  E-value=2.7e-05  Score=66.26  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=56.9

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+-.++    .+....+.|+++|.++.+++..                                  ++  ..++|+
T Consensus         1 m~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--~~~~dg   40 (186)
T 2ywj_A            1 MIIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV----------------------------------ED--LEGIDA   40 (186)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTSEEEEECSG----------------------------------GG--GTTCSE
T ss_pred             CEEEEEecCc----chHHHHHHHHHCCCEEEEECCh----------------------------------HH--hccCCE
Confidence            4799996533    4455679999999988776421                                  11  236899


Q ss_pred             EEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |++|||.+...  +.....+.++++   ++++||.+||.|.++|+.+
T Consensus        41 lil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           41 LIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             EEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             EEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            99999964221  111223455555   7899999999999999988

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.84  E-value=3.7e-05  Score=66.28  Aligned_cols=85  Identities=21%  Similarity=0.301  Sum_probs=59.2

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCC-----CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP   83 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (392)
                      |||+||-+..-+   +....+.|++.|     .++.++...                                  ++   
T Consensus         1 m~I~iid~~~g~---~~s~~~~l~~~G~~~~~~~~~~~~~~----------------------------------~~---   40 (201)
T 1gpw_B            1 MRIGIISVGPGN---IMNLYRGVKRASENFEDVSIELVESP----------------------------------RN---   40 (201)
T ss_dssp             CEEEEECCSSSC---CHHHHHHHHHHSTTBSSCEEEEECSC----------------------------------CS---
T ss_pred             CEEEEEecCCch---HHHHHHHHHHcCCCCCceEEEEECCC----------------------------------cc---
Confidence            478888655323   344557888888     777775421                                  11   


Q ss_pred             CCccEEEEcCCCCccc----ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           84 SKYDGLVIPGGRAPEY----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~----~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      .++|+|++|||.....    +. +..+.++|+++.++++||.+||.|.++|+.+.
T Consensus        41 ~~~dglilpG~g~~~~~~~~l~-~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           41 DLYDLLFIPGVGHFGEGMRRLR-ENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             SCCSEEEECCCSCSHHHHHHHH-HTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             cCCCEEEECCCCcHHHHHHHHH-hhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            3699999999633211    11 12367899999999999999999999999864

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.78  E-value=2.1e-05  Score=67.50  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             EEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEE
Q 016237           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLV   90 (392)
Q Consensus        11 I~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~ii   90 (392)
                      |+||=..+..   ...+.+.|+++|+++.++..+..                              .++++...+||+|+
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~~~~dgli   50 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLI   50 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEE
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC------------------------------CHHHHhhCCCCEEE
Confidence            7777633222   34678899999999988765411                              12222222599999


Q ss_pred             EcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ++||.+... ..+.+...++++++ ++++|+.+||.|.++|+.+
T Consensus        51 l~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           51 ISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             ECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             ECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            988865322 11112346888874 7899999999999999976

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.70  E-value=5.1e-05  Score=65.13  Aligned_cols=78  Identities=14%  Similarity=0.175  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh-ccCC
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALN  296 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~-~~~~  296 (392)
                      ..+.+.|+++|+++.++..+..                              .++++...+||.|+++||.+... ....
T Consensus        15 ~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~~~~dglil~gG~~~~~~~~~~   64 (195)
T 1qdl_B           15 YNIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLIISPGPGTPEKREDI   64 (195)
T ss_dssp             HHHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEEECCCSSCTTSHHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCCC------------------------------CHHHHhhCCCCEEEECCCCCChhhhhhh
Confidence            4678899999999888865310                              11122112589999988876422 1112


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +...++++++ ++++|+.+||.|.++|+.+
T Consensus        65 ~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           65 GVSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             TTHHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             hHHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            2456888875 7899999999999999987

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.58  E-value=0.00021  Score=63.27  Aligned_cols=93  Identities=19%  Similarity=0.314  Sum_probs=62.8

Q ss_pred             EEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEE
Q 016237          204 ILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALV  283 (392)
Q Consensus       204 v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~vi  283 (392)
                      +-+++...............|+..|.++.++-.+.+                            + .+.+ ...++|.||
T Consensus        13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~----------------------------~-~~~~-~l~~~Dgli   62 (239)
T 1o1y_A           13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG----------------------------E-KLER-PLEEYSLVV   62 (239)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT----------------------------C-CCSS-CGGGCSEEE
T ss_pred             eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc----------------------------c-cccc-chhcCCEEE
Confidence            334444444444677888999999988776533200                            0 0111 123689999


Q ss_pred             EcCCCChhh----ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          284 VPGGRAPEY----LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       284 ipgg~~~~~----~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +|||....+    .+.-..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        63 l~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           63 LLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             ECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence            999874211    1222468899999999999999999999999987

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.55  E-value=0.00015  Score=64.34  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=63.1

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+|+-...+  .........|++.|.++.++-.+..                            + .+.+ ....+|+
T Consensus        13 ~~~~~i~~~~~--~~~~~i~~~l~~~G~~v~v~~~~~~----------------------------~-~~~~-~l~~~Dg   60 (239)
T 1o1y_A           13 VRVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG----------------------------E-KLER-PLEEYSL   60 (239)
T ss_dssp             CEEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT----------------------------C-CCSS-CGGGCSE
T ss_pred             eEEEEEECCCC--CCchHHHHHHHhCCCcEEEeCCcCc----------------------------c-cccc-chhcCCE
Confidence            35666654444  4566788999999998876543210                            0 0111 1237999


Q ss_pred             EEEcCCCC-ccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~-~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||+|||.. +..   ...-..+.++|+++.++++|+.+||-|.++|+.+
T Consensus        61 lil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           61 VVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             EEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence            99999963 211   1111357899999999999999999999999986

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.55  E-value=0.00017  Score=67.99  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +||+++=+ |+.    ....+.|.++|.++.++..+.                               +.+++...++|.
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~-------------------------------~~e~i~~~~~DG  234 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT-------------------------------SAEDVLKMNPDG  234 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC-------------------------------CHHHHHTTCCSE
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC-------------------------------CHHHHhhcCCCE
Confidence            47877776 554    457889999999988874431                               111221236999


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||++||.+...  ......++|+++.++++||.+||.|.++|+.+
T Consensus       235 liLsGGPgdp~--~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          235 IFLSNGPGDPA--PCDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             EEECCCSBCST--TCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            99999975322  34678899999999999999999999999975

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.53  E-value=8.1e-05  Score=65.47  Aligned_cols=49  Identities=27%  Similarity=0.508  Sum_probs=40.4

Q ss_pred             CcCEEEEcCCCChh--hccCC--hHHHHHHHHHHHc-CCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPE--YLALN--ENVIALVKDFMEA-KKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~--~~~~~--~~l~~~l~~~~~~-g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||+|||....  .+..+  ..+.++|+++.++ ++||.+||.|.++|+.+
T Consensus        43 ~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           43 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence            58999999987421  23333  5789999999999 99999999999999986

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.48  E-value=5.2e-05  Score=65.86  Aligned_cols=88  Identities=17%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      |.++|+|+=+-.-   -+......|++.|++++++..                               ...+     .++
T Consensus         1 M~~~I~iiD~g~~---n~~si~~al~~~G~~~~v~~~-------------------------------~~~l-----~~~   41 (211)
T 4gud_A            1 MTQNVVIIDTGCA---NISSVKFAIERLGYAVTISRD-------------------------------PQVV-----LAA   41 (211)
T ss_dssp             --CCEEEECCCCT---THHHHHHHHHHTTCCEEEECC-------------------------------HHHH-----HHC
T ss_pred             CCCEEEEEECCCC---hHHHHHHHHHHCCCEEEEECC-------------------------------HHHH-----hCC
Confidence            3456777654332   356678889999988776521                               0012     257


Q ss_pred             CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      |.||+||+..+...........+++...+.++||.+||.|-++|+.+
T Consensus        42 D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           42 DKLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             SEEEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             CEEEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            99999986554322112222345677788999999999999999876

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.44  E-value=0.0002  Score=60.81  Aligned_cols=81  Identities=22%  Similarity=0.366  Sum_probs=55.7

Q ss_pred             cEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEE
Q 016237          203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDAL  282 (392)
Q Consensus       203 ~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~v  282 (392)
                      +|+++-..+    .+....+.|+++|+++.+++..                                  ++  ..++|.|
T Consensus         2 ~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--~~~~dgl   41 (186)
T 2ywj_A            2 IIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV----------------------------------ED--LEGIDAL   41 (186)
T ss_dssp             EEEEECSSS----CCHHHHHHHHHTTSEEEEECSG----------------------------------GG--GTTCSEE
T ss_pred             EEEEEecCc----chHHHHHHHHHCCCEEEEECCh----------------------------------HH--hccCCEE
Confidence            566665432    3455679999999887766420                                  01  2368999


Q ss_pred             EEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          283 VVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       283 iipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|||.+...  +.....+.++++   ++++||.+||.|.++|+.+
T Consensus        42 il~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           42 IIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             EECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             EECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            9999976322  222234556665   7899999999999999987

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.41  E-value=0.00025  Score=61.05  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             CCcCEEEEcCCCChhh-cc--CChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          277 SGYDALVVPGGRAPEY-LA--LNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       277 ~~~D~viipgg~~~~~-~~--~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      .++|.||+||+..+.. ..  .+..+.++|+++.++++||.+||.|.++|+.+.
T Consensus        41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            4689999999533211 11  112377899999999999999999999999874

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.41  E-value=3.9e-05  Score=67.09  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             CEEEEEecC-CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         9 ~kI~ill~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      +||+||=+. ++.    ..+...|+++|.++.++..+..                               .+++...+||
T Consensus        25 ~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~-------------------------------~~~l~~~~~d   69 (218)
T 2vpi_A           25 GAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP-------------------------------AFAIKEQGFR   69 (218)
T ss_dssp             TCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC-------------------------------HHHHHHHTCS
T ss_pred             CeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC-------------------------------hHHHhhcCCC
Confidence            589998653 442    4677889999999888765421                               1122223699


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|++|||.+...-...+   .+.+++.++++|+.+||.|.++|+.+
T Consensus        70 glil~Gg~~~~~~~~~~---~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           70 AIIISGGPNSVYAEDAP---WFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             EEEEEC---------CC---CCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCcccccccch---hHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            99999996422101111   12234456899999999999999974

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.40  E-value=8.8e-05  Score=64.10  Aligned_cols=97  Identities=18%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             CCEEEEEecC-CCC--ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237            8 KRSVLLLCGD-YME--DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS   84 (392)
Q Consensus         8 ~~kI~ill~~-g~~--~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   84 (392)
                      .+||+|+-+- +..  ..-+.....+|++.|+++..+......                          ++...+.  ..
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~--------------------------~~~~~~~--l~   78 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATES--------------------------LGEITTK--LR   78 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSC--------------------------HHHHHHH--HH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCC--------------------------hHHHHHH--HH
Confidence            4788888752 211  123456778888899888776543110                          0000111  22


Q ss_pred             CccEEEEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        85 ~~D~iiipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      +.|+|++|||...  ........+.+.|++++++|++++++|.|+.+|++
T Consensus        79 ~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~  128 (206)
T 3l4e_A           79 KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSP  128 (206)
T ss_dssp             HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred             hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence            6899999998643  22445677899999999999999999999999975

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.40  E-value=0.00031  Score=61.00  Aligned_cols=87  Identities=22%  Similarity=0.266  Sum_probs=57.0

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      |+||+++=+.+-.   .....+.|+++|.++.++..+.                               ..+++.  ++|
T Consensus        13 ~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~-------------------------------~~~~l~--~~D   56 (212)
T 2a9v_A           13 MLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI-------------------------------DSSELD--GLD   56 (212)
T ss_dssp             CCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS-------------------------------CGGGGT--TCS
T ss_pred             cceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHh--CCC
Confidence            5688887753322   3356788888998777665431                               123332  499


Q ss_pred             EEEEcCC-CCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGG-RAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG-~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|||||| .+... ....+.+.++   ..++++|+.+||.|.++|+.+
T Consensus        57 glIl~GG~p~~~~~~~~~~~l~~~---~~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           57 GLVLSGGAPNIDEELDKLGSVGKY---IDDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             EEEEEEECSCGGGTGGGHHHHHHH---HHHCCSCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCCCCcccccchhHHHH---HHhCCCCEEEEChHHHHHHHH
Confidence            9999999 54322 1122334444   357899999999999999976

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.32  E-value=0.00051  Score=64.74  Aligned_cols=87  Identities=22%  Similarity=0.273  Sum_probs=62.9

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .++.++-+ ++.    ....+.|.+.|+++.++..+.                               ..+++...++|.
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~-------------------------------~~e~i~~~~~DG  234 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT-------------------------------SAEDVLKMNPDG  234 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC-------------------------------CHHHHHTTCCSE
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC-------------------------------CHHHHhhcCCCE
Confidence            35665555 333    457888999999888874421                               011111136899


Q ss_pred             EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||++||++...  ......++|+++.++++||.+||.|.++|+.+
T Consensus       235 liLsGGPgdp~--~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          235 IFLSNGPGDPA--PCDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             EEECCCSBCST--TCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            99999987322  34778899999999999999999999999987

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.29  E-value=8.5e-05  Score=65.41  Aligned_cols=50  Identities=10%  Similarity=0.122  Sum_probs=41.1

Q ss_pred             CccEEEEcCCCCcc--cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        85 ~~D~iiipGG~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      +.|+|++|||....  .......+.+.|++++++|++++++|.|+.+|++..
T Consensus        79 ~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence            68999999987432  234456788999999999999999999999999854

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.24  E-value=0.00037  Score=69.45  Aligned_cols=89  Identities=21%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      |++|+|+-+.   ...+....+.|+++|+++.++....                             +   ..  ...+|
T Consensus         4 m~~I~Iid~~---~g~~~~~~~~l~~~G~~~~vv~~~~-----------------------------~---~~--l~~~D   46 (555)
T 1jvn_A            4 MPVVHVIDVE---SGNLQSLTNAIEHLGYEVQLVKSPK-----------------------------D---FN--ISGTS   46 (555)
T ss_dssp             SCEEEEECCS---CSCCHHHHHHHHHTTCEEEEESSGG-----------------------------G---CC--STTCS
T ss_pred             CCEEEEEECC---CCCHHHHHHHHHHCCCEEEEECCcc-----------------------------c---cc--cccCC
Confidence            4589999764   1244567889999999888865310                             0   11  23699


Q ss_pred             EEEEcCCCCccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .||+|||.....   ...+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        47 glILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           47 RLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             CEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             EEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence            999999533221   1112346789999999999999999999999985

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.17  E-value=0.00075  Score=60.29  Aligned_cols=78  Identities=27%  Similarity=0.302  Sum_probs=54.4

Q ss_pred             HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCc--ccc---
Q 016237           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAP--EYL---  100 (392)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~--~~~---  100 (392)
                      ...+.+.++|..+.++.+...                             ..+.+. .+.+|+|+++||.+.  ...   
T Consensus        32 ~~~~~l~~aG~~pv~lp~~~~-----------------------------~~~~~~-l~~~DGlil~GG~~v~P~~yg~~   81 (254)
T 3fij_A           32 RYVDAIQKVGGFPIALPIDDP-----------------------------STAVQA-ISLVDGLLLTGGQDITPQLYLEE   81 (254)
T ss_dssp             HHHHHHHHHTCEEEEECCCCG-----------------------------GGHHHH-HHTCSEEEECCCSCCCGGGGTCC
T ss_pred             HHHHHHHHCCCEEEEEeCCCc-----------------------------hHHHHH-HhhCCEEEECCCCCCChhhcCCc
Confidence            456778889988887765421                             001110 236999999999541  110   


Q ss_pred             ----------cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          101 ----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       101 ----------~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                                ..+...+.+++++.++++||.+||.|.++|+.+
T Consensus        82 ~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           82 PSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             CCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             cCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence                      112337899999999999999999999999976

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.15  E-value=0.0014  Score=56.91  Aligned_cols=87  Identities=21%  Similarity=0.248  Sum_probs=55.4

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+++.++-+.+..   .....+.|+++|.++.++..+.                               ..+++  .++|
T Consensus        13 ~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~-------------------------------~~~~l--~~~D   56 (212)
T 2a9v_A           13 MLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI-------------------------------DSSEL--DGLD   56 (212)
T ss_dssp             CCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS-------------------------------CGGGG--TTCS
T ss_pred             cceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHH--hCCC
Confidence            5566666544333   4457788888887766654320                               12222  2489


Q ss_pred             EEEEcCC-CChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGG-RAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg-~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .|||||| .+... ....+.+.++   ..++++|+.+||.|.++|+.+
T Consensus        57 glIl~GG~p~~~~~~~~~~~l~~~---~~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           57 GLVLSGGAPNIDEELDKLGSVGKY---IDDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             EEEEEEECSCGGGTGGGHHHHHHH---HHHCCSCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCCCCcccccchhHHHH---HHhCCCCEEEEChHHHHHHHH
Confidence            9999999 55322 1112333333   357899999999999999987

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.14  E-value=0.00024  Score=62.53  Aligned_cols=50  Identities=12%  Similarity=0.145  Sum_probs=40.8

Q ss_pred             CcCEEEEcCCCChh--hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC
Q 016237          278 GYDALVVPGGRAPE--YLALNENVIALVKDFMEAKKPVASICHGQQILAAAG  327 (392)
Q Consensus       278 ~~D~viipgg~~~~--~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag  327 (392)
                      ++|.||+|||....  .......+.+.|++++++|+|+.++|.|.++|++..
T Consensus        79 ~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence            57999999976532  234456788999999999999999999999998753

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.06  E-value=0.00021  Score=61.74  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             CccEEEEeCCCC---CcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCC
Q 016237          201 DKRILFLCGDYM---EDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVS  277 (392)
Q Consensus       201 ~~~v~ill~~~~---~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  277 (392)
                      .+++.++-+-.-   ...-+......|++.|++++.+.....                          ..+...+.  ..
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~--------------------------~~~~~~~~--l~   78 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE--------------------------SLGEITTK--LR   78 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS--------------------------CHHHHHHH--HH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------------------------ChHHHHHH--HH
Confidence            467877764321   112345688899999998877754310                          00000111  23


Q ss_pred             CcCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.|.|++|||...  ........+.+.|++++++|++++++|.|.++|+..
T Consensus        79 ~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A           79 KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            5799999998643  223456788999999999999999999999999854

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=97.03  E-value=0.00056  Score=67.78  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=56.7

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ..||+||=+-. .  -...+...|+++|..++++..+.                               +.+++....+|
T Consensus        10 ~~~I~IlD~g~-~--~~~~i~r~lr~~Gv~~~i~p~~~-------------------------------~~~~i~~~~~d   55 (527)
T 3tqi_A           10 QHRILILDFGS-Q--YAQLIARRVREIGVYCELMPCDI-------------------------------DEETIRDFNPH   55 (527)
T ss_dssp             CSEEEEEECSC-T--THHHHHHHHHHHTCEEEEEETTC-------------------------------CSSSSTTTCCS
T ss_pred             CCeEEEEECCC-c--cHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHHhcCCC
Confidence            46898886522 2  23567788999999888875432                               12222222579


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+|||.+...   +.......++.++.++||.+||.|.++|+.+
T Consensus        56 gIILsGGp~sv~---~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           56 GIILSGGPETVT---LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             EEEECCCCC------------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             EEEECCcCcccc---cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            999999965221   1222334455677899999999999999864

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.02  E-value=0.00017  Score=62.88  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=53.2

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .++++++-+.+..   ...+...|+++|.++.++..+..                               .+++...++|
T Consensus        24 ~~~I~iiD~g~~~---~~~i~~~l~~~G~~~~vv~~~~~-------------------------------~~~l~~~~~d   69 (218)
T 2vpi_A           24 EGAVVILDAGAQY---GKVIDRRVRELFVQSEIFPLETP-------------------------------AFAIKEQGFR   69 (218)
T ss_dssp             TTCEEEEECSTTT---THHHHHHHHHTTCCEEEECTTCC-------------------------------HHHHHHHTCS
T ss_pred             CCeEEEEECCCch---HHHHHHHHHHCCCEEEEEECCCC-------------------------------hHHHhhcCCC
Confidence            3577777554333   24677888999988887755310                               1111113689


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .|++|||.+...-....   .+.++..++++|+.+||.|.++|+.+
T Consensus        70 glil~Gg~~~~~~~~~~---~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           70 AIIISGGPNSVYAEDAP---WFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             EEEEEC---------CC---CCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCcccccccch---hHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            99999997532211111   11233456899999999999999986

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=97.00  E-value=0.00071  Score=61.66  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=40.1

Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||+|||++...+   +.+.++++++.++++||.+||.|.++|+.+
T Consensus        90 ~~dgiil~GG~~~~~~---~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a  135 (289)
T 2v4u_A           90 KADGILVPGGFGIRGT---LGKLQAISWARTKKIPFLGVXLGMQLAVIE  135 (289)
T ss_dssp             HCSEEEECSCCSSTTH---HHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hCCEEEecCCCCchhH---HHHHHHHHHHHHcCCcEEEECccHHHHHHH
Confidence            6899999999875332   578899999999999999999999999974

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=96.81  E-value=0.0011  Score=60.48  Aligned_cols=46  Identities=15%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ++|+||||||.+...+   ..+.++++++.++++||.+||.|.++|+.+
T Consensus        90 ~~dgiil~GG~~~~~~---~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a  135 (289)
T 2v4u_A           90 KADGILVPGGFGIRGT---LGKLQAISWARTKKIPFLGVXLGMQLAVIE  135 (289)
T ss_dssp             HCSEEEECSCCSSTTH---HHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hCCEEEecCCCCchhH---HHHHHHHHHHHHcCCcEEEECccHHHHHHH
Confidence            6899999999765322   578899999999999999999999999974

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.79  E-value=0.0031  Score=62.78  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ..||+||=+-.   .-.......|++.|..++++..+.                               +++++...++|
T Consensus         7 ~~~IlilD~Gs---~~~~~I~r~lre~Gv~~eiv~~~~-------------------------------~~~~i~~~~~d   52 (556)
T 3uow_A            7 YDKILVLNFGS---QYFHLIVKRLNNIKIFSETKDYGV-------------------------------ELKDIKDMNIK   52 (556)
T ss_dssp             CCEEEEEESSC---TTHHHHHHHHHHTTCCEEEEETTC-------------------------------CGGGTTTSCEE
T ss_pred             CCEEEEEECCC---ccHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhhcCCC
Confidence            35787775421   124567788999999888875431                               12333333789


Q ss_pred             EEEEcCCCCcccccCCHHH-HHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSV-IDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l-~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+|||.+.......+.+ ..+++.+.++++|+.+||.|.++|+.+
T Consensus        53 gIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           53 GVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             EEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            9999999753221111222 234455567799999999999999975

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=96.72  E-value=0.0015  Score=60.20  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=60.9

Q ss_pred             CEEEEEecCCCCc--------cchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCC
Q 016237            9 RSVLLLCGDYMED--------YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE   80 (392)
Q Consensus         9 ~kI~ill~~g~~~--------~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (392)
                      ..|+|+...+...        .-.....+.|+++|.++.++.....+                            ..+.+
T Consensus        31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~----------------------------~~i~~   82 (315)
T 1l9x_A           31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTE----------------------------KDYEI   82 (315)
T ss_dssp             CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCH----------------------------HHHHH
T ss_pred             CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCH----------------------------HHHHH
Confidence            5799987643211        12234678999999998887654210                            00111


Q ss_pred             CCCCCccEEEEcCCCC-cccc---cCCHHHHHHHHHHHhCC--CeEEEEchhhHHhhcC
Q 016237           81 IDPSKYDGLVIPGGRA-PEYL---AMNDSVIDLVRKFSNSG--KTIASICHGQLILAAA  133 (392)
Q Consensus        81 ~~~~~~D~iiipGG~~-~~~~---~~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a  133 (392)
                      . ...+|+||+|||.+ +...   .....+.+++++..+++  +||.+||.|.++|+.+
T Consensus        83 ~-l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a  140 (315)
T 1l9x_A           83 L-FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  140 (315)
T ss_dssp             H-HHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             H-HhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence            0 13689999999963 2211   01135677777776664  9999999999999875

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.70  E-value=0.0047  Score=61.46  Aligned_cols=91  Identities=18%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .+|+|+-+-.-   -.......+++.|..++++..+.                               ..+++...++|.
T Consensus         8 ~~IlilD~Gs~---~~~~I~r~lre~Gv~~eiv~~~~-------------------------------~~~~i~~~~~dg   53 (556)
T 3uow_A            8 DKILVLNFGSQ---YFHLIVKRLNNIKIFSETKDYGV-------------------------------ELKDIKDMNIKG   53 (556)
T ss_dssp             CEEEEEESSCT---THHHHHHHHHHTTCCEEEEETTC-------------------------------CGGGTTTSCEEE
T ss_pred             CEEEEEECCCc---cHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhhcCCCE
Confidence            45666554322   24567788889998888775431                               122332336899


Q ss_pred             EEEcCCCChhhccCChHHH-HHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEYLALNENVI-ALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~-~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||+|||++...-...+.+. .+++.+.++++|+.+||.|.++|+.+
T Consensus        54 IIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           54 VILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             EEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             EEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            9999998643211112222 33444567799999999999999987

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=96.67  E-value=0.0059  Score=61.69  Aligned_cols=89  Identities=19%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .|+|+|+=+  ++ .=...+...|++.|+++.++..+..                                  ....+||
T Consensus       446 Gk~IlviD~--gd-sf~~~l~~~l~~~G~~v~Vv~~d~~----------------------------------~~~~~~D  488 (645)
T 3r75_A          446 GCRALIVDA--ED-HFTAMIAQQLSSLGLATEVCGVHDA----------------------------------VDLARYD  488 (645)
T ss_dssp             TCEEEEEES--SC-THHHHHHHHHHHTTCEEEEEETTCC----------------------------------CCGGGCS
T ss_pred             CCEEEEEEC--Cc-cHHHHHHHHHHHCCCEEEEEECCCc----------------------------------ccccCCC
Confidence            467766643  22 1234577888899999988754420                                  0123689


Q ss_pred             EEEEcCCCCcccccCC---HHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~---~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .|||+||.+...-..+   ..+.++|+++.++++|+.+||-|.++|+.+
T Consensus       489 gIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          489 VVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             EEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence            9999999764321222   246788899999999999999999999864

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=96.56  E-value=0.0024  Score=57.62  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=38.4

Q ss_pred             CcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 016237          278 GYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAA  325 (392)
Q Consensus       278 ~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~  325 (392)
                      ++|.|++|||++...   .+...++++++.++++|+.+||.|.++|+.
T Consensus        67 ~~dgiil~GG~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Qll~~  111 (273)
T 2w7t_A           67 GCDGIFVPGGFGNRG---VDGKCAAAQVARMNNIPYFGVXLGMQVAVI  111 (273)
T ss_dssp             TCSEEEECCCCTTTT---HHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred             hCCEEEecCCCCCcC---chhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence            689999999987532   335778999999999999999999999986

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.48  E-value=0.0032  Score=62.73  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |++|.++-+..   ..+....+.|+++|+++.++...                    .         +   .  ...++|
T Consensus         4 m~~I~Iid~~~---g~~~~~~~~l~~~G~~~~vv~~~--------------------~---------~---~--~l~~~D   46 (555)
T 1jvn_A            4 MPVVHVIDVES---GNLQSLTNAIEHLGYEVQLVKSP--------------------K---------D---F--NISGTS   46 (555)
T ss_dssp             SCEEEEECCSC---SCCHHHHHHHHHTTCEEEEESSG--------------------G---------G---C--CSTTCS
T ss_pred             CCEEEEEECCC---CCHHHHHHHHHHCCCEEEEECCc--------------------c---------c---c--ccccCC
Confidence            46777776531   23456788899999888876431                    0         0   1  123689


Q ss_pred             EEEEcCCCChhh-c--cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEY-L--ALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+|||..+.. .  ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        47 glILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           47 RLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             CEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             EEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence            999999533221 1  112346789999999999999999999999986

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=96.45  E-value=0.0042  Score=55.35  Aligned_cols=79  Identities=24%  Similarity=0.336  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCCh--hhc--
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAP--EYL--  293 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~--~~~--  293 (392)
                      ...++.++++|..+.++.+...                             ..+.+ ..+.+|.|+++||.+.  ..+  
T Consensus        31 ~~~~~~l~~aG~~pv~lp~~~~-----------------------------~~~~~-~l~~~DGlil~GG~~v~P~~yg~   80 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDDP-----------------------------STAVQ-AISLVDGLLLTGGQDITPQLYLE   80 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCCG-----------------------------GGHHH-HHHTCSEEEECCCSCCCGGGGTC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCc-----------------------------hHHHH-HHhhCCEEEECCCCCCChhhcCC
Confidence            4467788888988877765311                             01111 1236899999999651  111  


Q ss_pred             -----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          294 -----------ALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       294 -----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                                 ..+...+++++++.++++||.+||.|.++|+.+
T Consensus        81 ~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           81 EPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             CCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             ccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence                       112347899999999999999999999999987

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.43  E-value=0.0069  Score=55.32  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             cccCCCCCCcCEEEEcCCCC-h---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          270 NFESVDVSGYDALVVPGGRA-P---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       270 ~~~~~~~~~~D~viipgg~~-~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+++++..+||.+||.|+.- .   +..+.-+++.++++...++++++.+||-|.++++.+
T Consensus       103 ~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~  163 (312)
T 2h2w_A          103 TFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYY  163 (312)
T ss_dssp             CGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             CcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHH
Confidence            56666667899999999873 1   223444788888988889999999999999995543

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=96.34  E-value=0.017  Score=58.36  Aligned_cols=76  Identities=25%  Similarity=0.357  Sum_probs=56.3

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccC-
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLAL-  295 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~-  295 (392)
                      ...+...|++.|++++++..+.                             +     ....++|.|||+||.+...-.. 
T Consensus       459 ~~~l~~~l~~~G~~v~Vv~~d~-----------------------------~-----~~~~~~DgIIlsGGPg~p~d~~~  504 (645)
T 3r75_A          459 TAMIAQQLSSLGLATEVCGVHD-----------------------------A-----VDLARYDVVVMGPGPGDPSDAGD  504 (645)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTC-----------------------------C-----CCGGGCSEEEECCCSSCTTCTTS
T ss_pred             HHHHHHHHHHCCCEEEEEECCC-----------------------------c-----ccccCCCEEEECCCCCChhhhhh
Confidence            4557788888999888875431                             0     0123689999999987433111 


Q ss_pred             --ChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          296 --NENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       296 --~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                        -..+.++|+++.+.++||.+||-|.++|+.+
T Consensus       505 p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          505 PRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence              2346788999999999999999999999987

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.28  E-value=0.0068  Score=55.20  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=43.6

Q ss_pred             cccCCCCCCcCEEEEcCCCC-h---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          270 NFESVDVSGYDALVVPGGRA-P---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       270 ~~~~~~~~~~D~viipgg~~-~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+++++..+||.+||.|+.- .   +..+.-+++.++++...++++++.+||-|.++++.+
T Consensus        91 ~f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~  151 (301)
T 2vdj_A           91 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  151 (301)
T ss_dssp             CHHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             CcccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHH
Confidence            45555556899999999873 1   223444788889998889999999999999995443

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.26  E-value=0.0069  Score=55.34  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=41.9

Q ss_pred             CcCCCCCCCccEEEEcCCCC-cc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           77 TFDEIDPSKYDGLVIPGGRA-PE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        77 ~~~~~~~~~~D~iiipGG~~-~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      ++++++...||++||.|+.- ..   ....=+++.++++...++++++.+||-|.++++.
T Consensus       103 ~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~  162 (312)
T 2h2w_A          103 TFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLY  162 (312)
T ss_dssp             CGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             CcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence            35555566899999999862 21   1222267888888888999999999999998543

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=96.23  E-value=0.0042  Score=56.03  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+|.|++|||.+...   .+...++++++.++++|+.+||.|.++|+.+
T Consensus        67 ~~dgiil~GG~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a  112 (273)
T 2w7t_A           67 GCDGIFVPGGFGNRG---VDGKCAAAQVARMNNIPYFGVXLGMQVAVIE  112 (273)
T ss_dssp             TCSEEEECCCCTTTT---HHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             hCCEEEecCCCCCcC---chhHHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            689999999976432   2357788999988999999999999999863

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=96.22  E-value=0.006  Score=60.37  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      .+|+|+-+..-   -...+...+++.|..++++..+.                               ..+++....+|.
T Consensus        11 ~~I~IlD~g~~---~~~~i~r~lr~~Gv~~~i~p~~~-------------------------------~~~~i~~~~~dg   56 (527)
T 3tqi_A           11 HRILILDFGSQ---YAQLIARRVREIGVYCELMPCDI-------------------------------DEETIRDFNPHG   56 (527)
T ss_dssp             SEEEEEECSCT---THHHHHHHHHHHTCEEEEEETTC-------------------------------CSSSSTTTCCSE
T ss_pred             CeEEEEECCCc---cHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHHhcCCCE
Confidence            45666655322   23567788899998888875431                               112222225799


Q ss_pred             EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||+|||++..+   ++......+...+.++||.+||.|.++|+.+
T Consensus        57 IILsGGp~sv~---~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           57 IILSGGPETVT---LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             EEECCCCC------------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             EEECCcCcccc---cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            99999976422   1222233445667899999999999999987

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=96.21  E-value=0.0027  Score=62.89  Aligned_cols=89  Identities=15%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+|+=+.+-.   ...+...|+++|..+.++..+..                               .+++..-.+|
T Consensus         7 ~~~IlIlD~g~~~---~~~i~r~lr~~G~~~~i~p~~~~-------------------------------~~~i~~~~~d   52 (525)
T 1gpm_A            7 KHRILILDFGSQY---TQLVARRVRELGVYCELWAWDVT-------------------------------EAQIRDFNPS   52 (525)
T ss_dssp             SSEEEEEECSCTT---HHHHHHHHHHTTCEEEEEESCCC-------------------------------HHHHHHHCCS
T ss_pred             CCEEEEEECCCcc---HHHHHHHHHHCCCEEEEEECCCC-------------------------------HHHHhccCCC
Confidence            3689888654322   35577899999998888754311                               1122111469


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+|||.+.-.-...+.+   .+++.+.++||.+||.|.++|+.+
T Consensus        53 giILsGGp~s~~~~~~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           53 GIILSGGPESTTEENSPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             EEEECCCSSCTTSTTCCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             EEEECCcCccccccCCcch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            9999999752211111212   244567899999999999999864

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=96.11  E-value=0.014  Score=49.45  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .....+.|++.|+++.++......                      .  .....+..   .++|.+|+.||.+...  ..
T Consensus        13 ~~~i~~~l~~~G~~~~v~~~~~~~----------------------~--~i~~~l~~---~~~~~iil~gGpg~~~--~~   63 (192)
T 1i1q_B           13 TWNLADQLRTNGHNVVIYRNHIPA----------------------Q--TLIDRLAT---MKNPVLMLSPGPGVPS--EA   63 (192)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTSCS----------------------H--HHHHHHTT---CSSEEEEECCCSSCGG--GS
T ss_pred             HHHHHHHHHHCCCeEEEEECCCCH----------------------H--HHHHHhhh---ccCCeEEECCCCcCch--hC
Confidence            345678888999998887653100                      0  00001111   1234577777776422  12


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ....+++ +..++++||.+||.|.++|+.+
T Consensus        64 ~~~~~l~-~~~~~~~PilGIC~G~Qll~~~   92 (192)
T 1i1q_B           64 GCMPELL-TRLRGKLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             TTHHHHH-HHHBTTBCEEEETHHHHHHHHH
T ss_pred             chHHHHH-HHHhcCCCEEEECcChHHHHHH
Confidence            2233344 4467899999999999999987

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.09  E-value=0.0064  Score=55.34  Aligned_cols=55  Identities=20%  Similarity=0.339  Sum_probs=40.7

Q ss_pred             cCCCCCCCccEEEEcCCCC-cc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhc
Q 016237           78 FDEIDPSKYDGLVIPGGRA-PE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (392)
Q Consensus        78 ~~~~~~~~~D~iiipGG~~-~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~  132 (392)
                      +++++...||++||.|+.- ..   ....=.++.++++...++++++.+||-|.++++.
T Consensus        92 f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~  150 (301)
T 2vdj_A           92 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLY  150 (301)
T ss_dssp             HHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             cccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHH
Confidence            4444456899999999862 21   1222267888888888999999999999998543

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.92  E-value=0.01  Score=57.72  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=41.4

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++|.|++|||+|..   ..+...++++++.++++|+.+||.|.++|+.+
T Consensus       348 L~~~DgIIlpGG~G~~---~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va  395 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSR---GAEGKIKAIKYAREHNIPFLGICFGFQLSIVE  395 (535)
T ss_dssp             TTSCSEEEECCCCSST---THHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCCEEEECCCCCCc---cHHHHHHHHHHHHHcCCcEEEECcchhHHHHH
Confidence            4589999999998753   33678899999999999999999999999866

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=95.57  E-value=0.028  Score=47.58  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             EEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCc-CCCCCCCccE
Q 016237           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF-DEIDPSKYDG   88 (392)
Q Consensus        10 kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~D~   88 (392)
                      ||+|+=.  ... =.....+.|++.|.++.++......                           + .+ +.+...++|.
T Consensus         2 ~i~iiDn--~~s-~~~~i~~~l~~~G~~~~v~~~~~~~---------------------------~-~i~~~l~~~~~~~   50 (192)
T 1i1q_B            2 DILLLDN--IDS-FTWNLADQLRTNGHNVVIYRNHIPA---------------------------Q-TLIDRLATMKNPV   50 (192)
T ss_dssp             EEEEEEC--SCS-SHHHHHHHHHHTTCEEEEEETTSCS---------------------------H-HHHHHHTTCSSEE
T ss_pred             cEEEEEC--Ccc-HHHHHHHHHHHCCCeEEEEECCCCH---------------------------H-HHHHHhhhccCCe
Confidence            6777652  221 1345578889999998887654110                           0 01 0001112445


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCc
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  134 (392)
                      +|+.||.+...  +......+++ ..++++||.+||-|.++|+.+.
T Consensus        51 iil~gGpg~~~--~~~~~~~l~~-~~~~~~PilGIC~G~Qll~~~~   93 (192)
T 1i1q_B           51 LMLSPGPGVPS--EAGCMPELLT-RLRGKLPIIGICLGHQAIVEAY   93 (192)
T ss_dssp             EEECCCSSCGG--GSTTHHHHHH-HHBTTBCEEEETHHHHHHHHHT
T ss_pred             EEECCCCcCch--hCchHHHHHH-HHhcCCCEEEECcChHHHHHHh
Confidence            77777765322  1222333444 4678999999999999999863

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=95.49  E-value=0.021  Score=51.66  Aligned_cols=128  Identities=13%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             cCceEecCCCCC---hHHHHHHHHHHhcCCcCCCCccEEEEeCCCCCcch-hHHHHHHHHhcCC-eEEEEcCCCCCCCCC
Q 016237          170 DGNIITGATYEG---HPEFIRLFLKALGGTITGSDKRILFLCGDYMEDYE-VAVPFQSLQALEC-HVDAVCPKKKAGDSC  244 (392)
Q Consensus       170 dg~iiT~~g~~s---~~~~~~~~i~~l~~~~~~~~~~v~ill~~~~~~~e-~~~~~~~~~~~~~-~v~~~s~~~~~~~~~  244 (392)
                      .|+++--+|...   ..++..++++...++    ..++.++.+-.....+ .....+.|++.|+ +++.+......    
T Consensus        26 ~g~l~iiGGgedk~~~~~i~~~~v~lagg~----~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~----   97 (291)
T 3en0_A           26 QPAILIIGGAEDKVHGREILQTFWSRSGGN----DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRA----   97 (291)
T ss_dssp             SCCEEEECSSCCSSSCCHHHHHHHHHTTGG----GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGG----
T ss_pred             CceEEEEECCCCccChHHHHHHHHHHcCCC----CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCcc----
Confidence            466766666553   346777888776643    3567777553332222 3446778888898 67776553110    


Q ss_pred             CCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcC-CcEEEEehHHH
Q 016237          245 PTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY--LALNENVIALVKDFMEAK-KPVASICHGQQ  321 (392)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g-~~i~aiC~G~~  321 (392)
                                     .     ..+..+.+ ...+.|+|+|+||.-...  ......+.+.|++.+++| .++++.|+|+.
T Consensus        98 ---------------~-----a~~~~~~~-~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~  156 (291)
T 3en0_A           98 ---------------Q-----GDDSGYRL-FVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAA  156 (291)
T ss_dssp             ---------------G-----GGCHHHHH-HHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHH
T ss_pred             ---------------c-----cCCHHHHH-HHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHH
Confidence                           0     01111111 123679999999875322  466889999999999999 89999999999


Q ss_pred             HHHHc
Q 016237          322 ILAAA  326 (392)
Q Consensus       322 ~La~a  326 (392)
                      ++...
T Consensus       157 i~~~~  161 (291)
T 3en0_A          157 VMGHH  161 (291)
T ss_dssp             TTSSE
T ss_pred             hhhHh
Confidence            88643

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.47  E-value=0.015  Score=56.43  Aligned_cols=48  Identities=13%  Similarity=0.249  Sum_probs=40.4

Q ss_pred             CCCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           83 PSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        83 ~~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ...+|+|++|||.+..   ......++++++.++++|+.+||.|.++|+.+
T Consensus       348 L~~~DgIIlpGG~G~~---~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va  395 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSR---GAEGKIKAIKYAREHNIPFLGICFGFQLSIVE  395 (535)
T ss_dssp             TTSCSEEEECCCCSST---THHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCCEEEECCCCCCc---cHHHHHHHHHHHHHcCCcEEEECcchhHHHHH
Confidence            3479999999998743   23567889999999999999999999999864

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=95.40  E-value=0.012  Score=54.24  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCC-hhh--c-c
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRA-PEY--L-A  294 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~-~~~--~-~  294 (392)
                      ...+.|+++|.++.++..+..                            ...+++. ..++|.||+|||.+ +..  . .
T Consensus        56 ~~~~~l~~~G~~~~vv~~~~~----------------------------~~~i~~~-l~~~dglil~GG~~~v~p~~~~~  106 (315)
T 1l9x_A           56 SYVKYLESAGARVVPVRLDLT----------------------------EKDYEIL-FKSINGILFPGGSVDLRRSDYAK  106 (315)
T ss_dssp             HHHHHHHHTTCEEEEECSSCC----------------------------HHHHHHH-HHHSSEEEECCCCCCTTTCHHHH
T ss_pred             HHHHHHHHCCCEEEEEecCCC----------------------------HHHHHHH-HhcCCEEEEeCCCcccChhhhhH
Confidence            467889999998888765311                            0011110 13689999999974 211  1 1


Q ss_pred             CChHHHHHHHHHHHcC--CcEEEEehHHHHHHHc
Q 016237          295 LNENVIALVKDFMEAK--KPVASICHGQQILAAA  326 (392)
Q Consensus       295 ~~~~l~~~l~~~~~~g--~~i~aiC~G~~~La~a  326 (392)
                      ....+.++++++.++|  +||.+||.|.++|+.+
T Consensus       107 ~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a  140 (315)
T 1l9x_A          107 VAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  140 (315)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence            1245677777777665  8999999999999976

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=95.35  E-value=0.022  Score=56.02  Aligned_cols=48  Identities=31%  Similarity=0.454  Sum_probs=40.4

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..++|.|++|||+|...   .+...++++++.++++|+.+||.|-++|+.+
T Consensus       341 l~~~DGIilsGGpg~~~---~~g~~~~i~~a~~~~~PiLGIClG~Qll~va  388 (545)
T 1s1m_A          341 LKGLDAILVPGGFGYRG---VEGMITTARFARENNIPYLGICLGMQVALID  388 (545)
T ss_dssp             TTTCSEEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hhcCCEEEECCCCCCcc---chhhHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence            35799999999987532   3567789999999999999999999999964

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=95.28  E-value=0.021  Score=56.28  Aligned_cols=47  Identities=28%  Similarity=0.351  Sum_probs=39.6

Q ss_pred             CCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+|.|++|||+|...   .+..+++++++.++++|+.+||.|-++|+.+
T Consensus       354 ~~~DGIILpGGfGd~~---~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---hhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            4789999999987533   2456788999989999999999999999876

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=95.12  E-value=0.017  Score=52.37  Aligned_cols=50  Identities=18%  Similarity=0.400  Sum_probs=41.8

Q ss_pred             CccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCC-CeEEEEchhhHHhhcCc
Q 016237           85 KYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAAD  134 (392)
Q Consensus        85 ~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~-~~i~aic~G~~~La~ag  134 (392)
                      +.|+|+|+||.....  ......+.+.|++.+++| .++++.|.|+.+++..-
T Consensus       110 ~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~~m  162 (291)
T 3en0_A          110 QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGHHM  162 (291)
T ss_dssp             HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSSEE
T ss_pred             cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhHhe
Confidence            689999999975322  456778999999999999 89999999999987643

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=94.83  E-value=0.016  Score=57.21  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=55.3

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      ++|+|+-+..-.   ...+...++++|..+.++..+..                            ...+.+.   .+|.
T Consensus         8 ~~IlIlD~g~~~---~~~i~r~lr~~G~~~~i~p~~~~----------------------------~~~i~~~---~~dg   53 (525)
T 1gpm_A            8 HRILILDFGSQY---TQLVARRVRELGVYCELWAWDVT----------------------------EAQIRDF---NPSG   53 (525)
T ss_dssp             SEEEEEECSCTT---HHHHHHHHHHTTCEEEEEESCCC----------------------------HHHHHHH---CCSE
T ss_pred             CEEEEEECCCcc---HHHHHHHHHHCCCEEEEEECCCC----------------------------HHHHhcc---CCCE
Confidence            456666544322   35577889999988888754310                            0112222   4699


Q ss_pred             EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||+|||++..+-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        54 iILsGGp~s~~~~~~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           54 IILSGGPESTTEENSPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             EEECCCSSCTTSTTCCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             EEECCcCccccccCCcch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            999999863221111111   234457899999999999999986

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=94.80  E-value=0.036  Score=54.57  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..+|.|++|||.+...   .....++++++.++++|+.+||.|.++|+.+
T Consensus       342 ~~~DGIilsGGpg~~~---~~g~~~~i~~a~~~~~PiLGIClG~Qll~va  388 (545)
T 1s1m_A          342 KGLDAILVPGGFGYRG---VEGMITTARFARENNIPYLGICLGMQVALID  388 (545)
T ss_dssp             TTCSEEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---chhhHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence            4799999999986432   2567789999999999999999999999864

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=94.73  E-value=0.032  Score=54.97  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=38.9

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..+|.|++|||.|...   ....+..++++.++++|+.+||-|.++|+.+
T Consensus       354 ~~~DGIILpGGfGd~~---~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---hhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            3699999999986432   2456788898888999999999999999865

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=94.23  E-value=0.033  Score=54.69  Aligned_cols=75  Identities=16%  Similarity=0.185  Sum_probs=48.7

Q ss_pred             HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND  104 (392)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~  104 (392)
                      ......|+++|..+.++..+..                               .+++..-.+|+||+|||.+.-.-...+
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~~-------------------------------~~~i~~~~~dgiIlsGGp~s~~~~~~~   61 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDAP-------------------------------LEEVLKHRPQALILSGGPRSVFDPDAP   61 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTCC-------------------------------HHHHHTTCCSEEEECCCSSCSSCTTCC
T ss_pred             HHHHHHHHHCCCEEEEEECCCC-------------------------------HHHHHhcCCCEEEECCCCchhccCCCc
Confidence            5677899999988887744311                               112111146999999997522111111


Q ss_pred             HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+   .++.++.++||.+||.|.++|+.+
T Consensus        62 ~~---~~~~~~~~~PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           62 RP---DPRLFSSGLPLLGICYGMQLLAQE   87 (503)
T ss_dssp             CC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred             ch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            11   234557899999999999999976

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=94.13  E-value=0.041  Score=54.05  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             hHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCC
Q 016237          217 VAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALN  296 (392)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~  296 (392)
                      .......++++|..+.++..+..                            ...+.+.   .+|.||+|||++..+-...
T Consensus        12 ~~~i~r~l~~~G~~~~i~p~~~~----------------------------~~~i~~~---~~dgiIlsGGp~s~~~~~~   60 (503)
T 2ywb_A           12 TRLIARRLRELRAFSLILPGDAP----------------------------LEEVLKH---RPQALILSGGPRSVFDPDA   60 (503)
T ss_dssp             HHHHHHHHHTTTCCEEEEETTCC----------------------------HHHHHTT---CCSEEEECCCSSCSSCTTC
T ss_pred             HHHHHHHHHHCCCEEEEEECCCC----------------------------HHHHHhc---CCCEEEECCCCchhccCCC
Confidence            35678889999988777744310                            0112222   4699999999863221111


Q ss_pred             hHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          297 ENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       297 ~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.+   .+...+.++||.+||.|.++|+.+
T Consensus        61 ~~~---~~~~~~~~~PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           61 PRP---DPRLFSSGLPLLGICYGMQLLAQE   87 (503)
T ss_dssp             CCC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred             cch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            111   133456899999999999999987

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=93.95  E-value=0.014  Score=59.51  Aligned_cols=89  Identities=16%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ..||+||=+.+-.. +  .+...|++.|..+.++..+.                               +.+++...++|
T Consensus        29 ~~~I~VLDfg~q~~-~--liar~lre~Gv~~~ivp~~~-------------------------------~~e~i~~~~~d   74 (697)
T 2vxo_A           29 EGAVVILDAGAQYG-K--VIDRRVRELFVQSEIFPLET-------------------------------PAFAIKEQGFR   74 (697)
T ss_dssp             CCCEEEEEEC--CH-H--HHHHHHHHTTCCEEEEETTC-------------------------------CHHHHHHHTCS
T ss_pred             CCEEEEEECCCchH-H--HHHHHHHHCCCEEEEEECCC-------------------------------CHHHHhhcCCC
Confidence            35788887654221 2  35588999998888876542                               11222223689


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||++||.+...-...+.+   .++.++.++||.+||.|.++|+.+
T Consensus        75 GIILsGGp~s~~~~~~~~~---~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           75 AIIISGGPNSVYAEDAPWF---DPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             EEEEEECC-------CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             EEEECCCCCcccCccchhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            9999999753110111111   133456899999999999999974

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=93.40  E-value=0.029  Score=57.14  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..+++++-+.+-.   -......+++.|..+.++..+.                               ..+++...++|
T Consensus        29 ~~~I~VLDfg~q~---~~liar~lre~Gv~~~ivp~~~-------------------------------~~e~i~~~~~d   74 (697)
T 2vxo_A           29 EGAVVILDAGAQY---GKVIDRRVRELFVQSEIFPLET-------------------------------PAFAIKEQGFR   74 (697)
T ss_dssp             CCCEEEEEEC--C---HHHHHHHHHHTTCCEEEEETTC-------------------------------CHHHHHHHTCS
T ss_pred             CCEEEEEECCCch---HHHHHHHHHHCCCEEEEEECCC-------------------------------CHHHHhhcCCC
Confidence            3467777655422   1235678888898888875531                               11111113689


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||++||++..+-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        75 GIILsGGp~s~~~~~~~~~---~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           75 AIIISGGPNSVYAEDAPWF---DPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             EEEEEECC-------CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             EEEECCCCCcccCccchhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            9999999874221111111   123356899999999999999987

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=92.59  E-value=0.41  Score=42.42  Aligned_cols=83  Identities=13%  Similarity=0.021  Sum_probs=54.6

Q ss_pred             CCEEEEEecCCCC-ccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |+||+|+-  |.. ..+.....+.|++.||+|++++...-+                            .+.++  ..+|
T Consensus         4 m~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~----------------------------~~~~~--L~~y   51 (259)
T 3rht_A            4 MTRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSHVGL----------------------------DVGEL--LAKQ   51 (259)
T ss_dssp             --CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTTSCB----------------------------CSSHH--HHTC
T ss_pred             CceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecccccc----------------------------cChhH--HhcC
Confidence            67999993  332 345566777999999999999876321                            01222  3489


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH  125 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~  125 (392)
                      |+||++.-. ...  -++.-.+.|+++.++|.-++.+..
T Consensus        52 DvIIl~d~~-~~~--l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           52 DLVILSDYP-AER--MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             SEEEEESCC-GGG--BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEcCCc-ccc--CCHHHHHHHHHHHHhCCeEEEecC
Confidence            999998532 222  246777788888888887777653

>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*

Probab=83.07  E-value=4.1  Score=40.66  Aligned_cols=87  Identities=15%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             CCEEEEEecCCC------Cc----------cchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCc
Q 016237            8 KRSVLLLCGDYM------ED----------YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN   71 (392)
Q Consensus         8 ~~kI~ill~~g~------~~----------~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   71 (392)
                      +.|||||=.-|-      ..          ....++++.|+.++++|++++-+.                  +...    
T Consensus       438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdD------------------I~e~----  495 (759)
T 2zuv_A          438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDD------------------VLAH----  495 (759)
T ss_dssp             CSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHH------------------HHHH----
T ss_pred             CceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHH------------------hccc----
Confidence            479999975421      11          155779999999999999998652                  1100    


Q ss_pred             cccCcCcCCCCCCCccEEEEcCCCC----cccccCCHHHHHHHHHHHhCCCeEEEEch
Q 016237           72 FALNATFDEIDPSKYDGLVIPGGRA----PEYLAMNDSVIDLVRKFSNSGKTIASICH  125 (392)
Q Consensus        72 ~~~~~~~~~~~~~~~D~iiipGG~~----~~~~~~~~~l~~~l~~~~~~~~~i~aic~  125 (392)
                             +  .+++||+||-+|-.+    ......++.....|+++..+|.-+++++.
T Consensus       496 -------e--~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGe  544 (759)
T 2zuv_A          496 -------G--IDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGE  544 (759)
T ss_dssp             -------C--CCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEES
T ss_pred             -------c--ccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCC
Confidence                   1  135899999999322    11234579999999999999999999985

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=82.53  E-value=17  Score=32.36  Aligned_cols=91  Identities=16%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             CCEEEEEecCCCCccch--HHHHHHHHhCC-CeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCC
Q 016237            8 KRSVLLLCGDYMEDYEA--MVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPS   84 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~--~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   84 (392)
                      +.||+|+.....-..+.  ..+.+.|++.| |+|++......+                 ...        ..+.+ +..
T Consensus         4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~-----------------~d~--------~~f~~-~L~   57 (281)
T 4e5v_A            4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQG-----------------KDM--------SGFVL-DFS   57 (281)
T ss_dssp             CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTT-----------------SCC--------TTCCC-CCT
T ss_pred             ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccc-----------------cch--------hHHhh-hhh
Confidence            56888886533221221  34455556677 999997543110                 000        01211 345


Q ss_pred             CccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhH
Q 016237           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (392)
Q Consensus        85 ~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~  128 (392)
                      +||+||+-- .+ ..  -++...+-|+++.++|+.++++.++..
T Consensus        58 ~~D~vV~~~-~~-~~--l~~~~~~~l~~yV~~Ggglv~~H~a~~   97 (281)
T 4e5v_A           58 PYQLVVLDY-NG-DS--WPEETNRRFLEYVQNGGGVVIYHAADN   97 (281)
T ss_dssp             TCSEEEECC-CS-SC--CCHHHHHHHHHHHHTTCEEEEEGGGGG
T ss_pred             cCCEEEEeC-CC-Cc--CCHHHHHHHHHHHHcCCCEEEEecccc
Confidence            899999633 22 11  246777788888999999999987653

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=81.47  E-value=4.9  Score=35.41  Aligned_cols=83  Identities=10%  Similarity=0.067  Sum_probs=53.0

Q ss_pred             CCccEEEEeCCCCC-cchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          200 SDKRILFLCGDYME-DYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       200 ~~~~v~ill~~~~~-~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      .|++++++-  +.. ......+.+.|+..||+|++++.+.-+                            .+.+  ...+
T Consensus         3 ~m~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~----------------------------~~~~--~L~~   50 (259)
T 3rht_A            3 AMTRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSHVGL----------------------------DVGE--LLAK   50 (259)
T ss_dssp             ---CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTTSCB----------------------------CSSH--HHHT
T ss_pred             CCceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecccccc----------------------------cChh--HHhc
Confidence            467777773  332 234556777899999999999875221                            0122  2348


Q ss_pred             cCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEe
Q 016237          279 YDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASIC  317 (392)
Q Consensus       279 ~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC  317 (392)
                      ||+||++.- ...  .-++...+.|+++.++|.-++.+.
T Consensus        51 yDvIIl~d~-~~~--~l~~~~~~~L~~yV~~GGgLi~~g   86 (259)
T 3rht_A           51 QDLVILSDY-PAE--RMTAQAIDQLVTMVKAGCGLVMLG   86 (259)
T ss_dssp             CSEEEEESC-CGG--GBCHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEcCC-ccc--cCCHHHHHHHHHHHHhCCeEEEec
Confidence            999999742 211  235778888888888898777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	8e-32
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	3e-28
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	7e-30
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-26
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	6e-28
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	5e-26
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	3e-25
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	4e-22
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	1e-21
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	2e-19
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	8e-20
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	3e-17
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	4e-18
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	1e-17
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	6e-18
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	3e-16
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	9e-18
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	4e-17
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	6e-16
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	4e-12
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	9e-16
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	3e-14

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (295), Expect = 8e-32
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 19/192 (9%)

Query: 8   KRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT 63
           K+  ++L G    D  E +EA++   A+   G       P K+  DV      ++     
Sbjct: 2   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETR 61

Query: 64  YSETRGHNFALNA--TFDEIDPSKYDGLVIPGGRAP-----------EYLAMNDSVIDLV 110
                             + D ++ D L++PGG                  ++  +  L 
Sbjct: 62  NVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALA 121

Query: 111 RKFSNSGKTIASICHGQLILAAADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACVV 169
           +    +GK +  +C    +L        R           VL   GA  +        V 
Sbjct: 122 QAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVD 181

Query: 170 -DGNIITGATYE 180
            D  I+T   Y 
Sbjct: 182 EDNKIVTTPAYM 193

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 3e-28
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 22/192 (11%)

Query: 202 KRILFL---CG--DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQT 256
           K+I  +   CG  D  E +E  +   ++           P K+  D       +   +  
Sbjct: 2   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETR 61

Query: 257 YSEKPGHNFTL--TANFESVDVSGYDALVVPGGRAP-----------EYLALNENVIALV 303
                    T          D +  DAL+VPGG                  ++  + AL 
Sbjct: 62  NVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALA 121

Query: 304 KDFMEAKKPVASICHGQQILAAAGVLKGK-KCTAYPAVKLNVLLAGASWLEPDPIDRCFT 362
           +   +A KP+  +C    +L        +            +   GA  +   P+D    
Sbjct: 122 QAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPC-PVDDIVV 180

Query: 363 D--GNLVSGAAW 372
           D    +V+  A+
Sbjct: 181 DEDNKIVTTPAY 192

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (277), Expect = 7e-30
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 17/186 (9%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + + +L  D  ED E   P       G  V                     G     +  
Sbjct: 2   KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQA--------------GKTVKGKKG 47

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
             +  ++ + DE+ P+++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  
Sbjct: 48  EASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 107

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           +L +ADV++GRK TA  P+   +  AGA + + E     V    ++T  T +  P F R 
Sbjct: 108 LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---VVVDKDQLVTSRTPDDLPAFNRE 164

Query: 189 FLKALG 194
            L+ LG
Sbjct: 165 ALRLLG 170

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 1e-26
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 17/186 (9%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           K+I  L  D  ED E   P    +     V  +  +               G     +K 
Sbjct: 2   KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQA--------------GKTVKGKKG 47

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
             + T+  + + V  + +DAL++PGG +P+YL  +   +   +DF+ + KPV +ICHG Q
Sbjct: 48  EASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 107

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQ 381
           +L +A V++G+K TA   + ++V  AGA + +    +       LV+       P F  +
Sbjct: 108 LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQ---EVVVDKDQLVTSRTPDDLPAFNRE 164

Query: 382 LMALLG 387
            + LLG
Sbjct: 165 ALRLLG 170

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  105 bits (263), Expect = 6e-28
 Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 20/183 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           VL L  +  ED E + P+  L   G  V  A   +                 T +   G+
Sbjct: 3   VLFLTANEFEDVELIYPYHRLKEEGHEVYIASFER----------------GTITGKHGY 46

Query: 71  NFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
           +  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL
Sbjct: 47  SVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQIL 106

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFL 190
            +A V++GRK T+YP +K  +I AG  W++    A  VVDGN ++         ++R F+
Sbjct: 107 ISAGVLRGRKGTSYPGIKDDMINAGVEWVD----AEVVVDGNWVSSRVPADLYAWMREFV 162

Query: 191 KAL 193
           K L
Sbjct: 163 KLL 165

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  100 bits (250), Expect = 5e-26
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 20/184 (10%)

Query: 203 RILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPG 262
           ++LFL  +  ED E+  P+  L+     V     ++                 T + K G
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFER----------------GTITGKHG 45

Query: 263 HNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQI 322
           ++  +   F+ V+   +DALV+PGGRAPE + LNE  +++ +      KPVASICHG QI
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQI 105

Query: 323 LAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQL 382
           L +AGVL+G+K T+YP +K +++ AG  W++         DGN VS         ++ + 
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDMINAGVEWVD----AEVVVDGNWVSSRVPADLYAWMREF 161

Query: 383 MALL 386
           + LL
Sbjct: 162 VKLL 165

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 3e-25
 Identities = 38/230 (16%), Positives = 70/230 (30%), Gaps = 47/230 (20%)

Query: 11  VLLLCGDYMEDY------------EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS 58
           VLL    Y + +            EA+ PF      G  VD      K G    +     
Sbjct: 5   VLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDF 64

Query: 59  TGHQTYSETRGHNFALNATF------DEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVR 111
              Q  ++ +  +   N T        E++   Y   +   G    +       + D+  
Sbjct: 65  LNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIAS 124

Query: 112 KFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYP------------------- 145
           +   +G  +A++CHG  +            +++G+  T +                    
Sbjct: 125 EIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLA 184

Query: 146 PVKPVLIAAGASWIEPETMAAC--VVDGNIITGATYEGHPEFIRLFLKAL 193
            V+ V    GA ++ P        + DG ++TG             + AL
Sbjct: 185 TVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 234

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (227), Expect = 4e-22
 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 47/215 (21%)

Query: 202 KRILFLCGDYMEDY------------EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVH 249
           K++L     Y + +            E   PF + +     VD V    K G    +   
Sbjct: 3   KKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAK 62

Query: 250 DFEGDQTYSEKPGHN------FTLTANFESVDVSGYDALVVPGGRAPEY-LALNENVIAL 302
           DF   Q  ++    +             + V+   Y   +   G    +     +++  +
Sbjct: 63  DFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDI 122

Query: 303 VKDFMEAKKPVASICHGQQILAAA-------GVLKGKKCTAYP----------------- 338
             +       VA++CHG  +            +++GK  T +                  
Sbjct: 123 ASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKN 182

Query: 339 --AVKLNVLLAGASWLEPDPIDRCF--TDGNLVSG 369
              V+      GA +L P      +  TDG LV+G
Sbjct: 183 LATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTG 217

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 90.3 bits (223), Expect = 1e-21
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 26/196 (13%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82
           E  VP+      G  V  A    + G+V       +    +++E         A   + D
Sbjct: 27  EFAVPYLVFQEKGYDVKVASI--QGGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKDD 83

Query: 83  PSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA------ADV 135
              +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L          +
Sbjct: 84  AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPI 143

Query: 136 VKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGATY 179
           VKG+  T++                 ++  L   GA+++         V DGN+ITG   
Sbjct: 144 VKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNP 203

Query: 180 EGHPEFIRLFLKALGG 195
           +         + AL  
Sbjct: 204 QSSRSTAEKVVAALEE 219

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 84.1 bits (207), Expect = 2e-19
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 36/218 (16%)

Query: 202 KRILFLC---GDYMEDY-------EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDF 251
           KR+L +        +D+       E AVP+   Q     V     +   G+         
Sbjct: 3   KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQ--GGEVPLDPRSIN 60

Query: 252 EGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAK 310
           E D +++E        TA     D  G+DA+ +PGG    +    NE +  +++ F E  
Sbjct: 61  EKDPSWAEAEAA-LKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDG 119

Query: 311 KPVASICHGQQILAA------AGVLKGKKCTAYP---------------AVKLNVLLAGA 349
           + +A++CHG   L          ++KGK  T++                 ++  + L GA
Sbjct: 120 RIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGA 179

Query: 350 SWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALL 386
           +++      D    DGNL++G           +++A L
Sbjct: 180 NFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAAL 217

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 86.3 bits (213), Expect = 8e-20
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAV-HQSTGHQTYSETRGHNFAL-----NA 76
           E ++P   L A G   + A            A+ H+      + E     F       + 
Sbjct: 73  ETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADV 132

Query: 77  TFDEIDPSKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD- 134
                  S+Y  + +PGG      L  +  V   ++    + + + S+CHG     A   
Sbjct: 133 VASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH 192

Query: 135 ---VVKGRKCTAYPP-------------------VKPVLIAAGASWIEPETMAACVVDGN 172
               + G    A+P                        L   G + I  +       D  
Sbjct: 193 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRK 252

Query: 173 IITGATYEGHPEFIRLFLKAL 193
           ++TG +        +L  + +
Sbjct: 253 LLTGDSPFAANALGKLAAQEM 273

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 79.0 bits (194), Expect = 3e-17
 Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 30/184 (16%)

Query: 216 EVAVPFQSLQALECHVDAVCPKKKAGDSCPTAV-HDFEGDQTYSEKPGHNFTLTAN---- 270
           E  +P   L A     +              A+ H  E    + E+    F         
Sbjct: 73  ETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADV 132

Query: 271 -FESVDVSGYDALVVPGGRAPE-YLALNENVIALVKDFMEAKKPVASICHGQQILAAA-- 326
                  S Y A+ VPGG      L  +++V A ++  ++  + V S+CHG     A   
Sbjct: 133 VASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH 192

Query: 327 --GVLKGKKCTAYP-------------------AVKLNVLLAGASWLEPDPIDRCFTDGN 365
               L G    A+P                        +   G + +  D   R   D  
Sbjct: 193 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRK 252

Query: 366 LVSG 369
           L++G
Sbjct: 253 LLTG 256

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 79.7 bits (196), Expect = 4e-18
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 19/186 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           + +       D+E  +   A     GV +  A P           V    G +       
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-------PVTSMGGLK------- 49

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
                + ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC     
Sbjct: 50  --VTPDTSYDALDPVDIDALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAASA 106

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L    V+     T           A             V DG ++T A       F    
Sbjct: 107 LGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEI 165

Query: 190 LKALGG 195
           LK+LG 
Sbjct: 166 LKSLGL 171

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 19/188 (10%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSL-QALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEK 260
            RI         D+E A+   +    L   +    P                     +  
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDG----------------MPVTSM 45

Query: 261 PGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQ 320
            G   T   +++++D    DALV+PGG + E      ++  LVK F +  + VA IC   
Sbjct: 46  GGLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAA 104

Query: 321 QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFIS 380
             L   GVL     T           A           R  +DG +V+ AA      F  
Sbjct: 105 SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVT-AAGSAPVSFAV 163

Query: 381 QLMALLGI 388
           +++  LG+
Sbjct: 164 EILKSLGL 171

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 77.8 bits (191), Expect = 6e-18
 Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           + +  L  D +   ++    ++L+A   H   +  +     +                  
Sbjct: 4   RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDG--------------- 48

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
                + A F        DA++VP G   + +A N +    + +  +  KP+A     ++
Sbjct: 49  -TVLPIAATFAGAPSLTVDAVIVPCGNIAD-IADNGDANYYLMEAYKHLKPIALAGDARK 106

Query: 322 ILAAAGVLKGKK 333
             A   +    +
Sbjct: 107 FKATIKIADQGE 118

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 73.2 bits (179), Expect = 3e-16
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 17/132 (12%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           R V +L  D +   + +   +AL A GV                            +   
Sbjct: 4   RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSR----------------MGEVTADD 47

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           G    + ATF        D +++P G   + +A N      + +     K IA     + 
Sbjct: 48  GTVLPIAATFAGAPSLTVDAVIVPCGNIAD-IADNGDANYYLMEAYKHLKPIALAGDARK 106

Query: 129 ILAAADVVKGRK 140
             A   +    +
Sbjct: 107 FKATIKIADQGE 118

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 78.4 bits (192), Expect = 9e-18
 Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 19/178 (10%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           R V ++  D  ++      + A+ A         P                  +  +   
Sbjct: 4   RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGP---------------RRSKVTAANG 48

Query: 69  GHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
                 +              +  G +A E L+ N   +  +R+     K I +      
Sbjct: 49  STVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVD 108

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
           ++A A  +     ++   V           ++PE       D   I         EF 
Sbjct: 109 LVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE----SFTDAVKIAKGAAGFLGEFF 162

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 76.5 bits (187), Expect = 4e-17
 Identities = 19/181 (10%), Positives = 51/181 (28%), Gaps = 19/181 (10%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           +R+  +  D  ++      + ++ A +     +                    +  +   
Sbjct: 4   RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIG---------------PRRSKVTAANG 48

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQ 321
                                +  G +A E L+ N   +  +++     K + +      
Sbjct: 49  STVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVD 108

Query: 322 ILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFISQ 381
           ++A A  L     ++   V  +  +     ++       FTD   ++  A     EF   
Sbjct: 109 LVAKAIALPQVTVSSEAEVHESYGVVTLKKVK----PESFTDAVKIAKGAAGFLGEFFYA 164

Query: 382 L 382
           +
Sbjct: 165 I 165

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 73.2 bits (179), Expect = 6e-16
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           S L+      E+ EA+     L+  G+ V  A            +             RG
Sbjct: 3   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCS-------------RG 49

Query: 70  HNFALNATFDEIDPSKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICH-GQ 127
                +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC    
Sbjct: 50  VKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPA 109

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATYEGHPEF 185
            +L   D+      T +P +K  + A              V D    ++T        +F
Sbjct: 110 TVLVPHDIFPIGNMTGFPTLKDKIPAEQWLD------KRVVWDARVKLLTSQGPGTAIDF 163

Query: 186 IRLFLKALGG 195
               +  L G
Sbjct: 164 GLKIIDLLVG 173

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 62.5 bits (151), Expect = 4e-12
 Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
              L       E+ E       L      V                    +G+   +   
Sbjct: 2   ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVAS-------------DGNLAITCSR 48

Query: 262 GHNFTLTANFESVDVSGYDALVVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICH-G 319
           G      A    V    YD +V+PGG    E    +  ++  VK F  + + VA+IC   
Sbjct: 49  GVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 108

Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFI 379
             +L    +      T +P +K  +        +    D       L++        +F 
Sbjct: 109 ATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLD-KRVVWDA---RVKLLTSQGPGTAIDFG 164

Query: 380 SQLMALL 386
            +++ LL
Sbjct: 165 LKIIDLL 171

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 9e-16
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 20/189 (10%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +  L++     E+ E ++P   +   G+ V  A                  G      +R
Sbjct: 2   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGL---------------AGKDPVQCSR 46

Query: 69  GHNFALNATFDEIDPSK-YDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHG 126
                 +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+IC G
Sbjct: 47  DVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAG 106

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
              L A ++  G K T +P  K  ++          +      DG I+T        EF 
Sbjct: 107 PTALLAHEIGFGSKVTTHPLAKDKMMNG---GHYTYSENRVEKDGLILTSRGPGTSFEFA 163

Query: 187 RLFLKALGG 195
              ++AL G
Sbjct: 164 LAIVEALNG 172

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 3e-14
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP 261
           KR L +     E+ E  +P   ++     V                     G        
Sbjct: 2   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGL---------------AGKDPVQCSR 46

Query: 262 GHNFTLTANFESVDVSG-YDALVVPGGRAP-EYLALNENVIALVKDFMEAKKPVASICHG 319
                  A+ E     G YD +V+PGG    + L+ +  V  ++K+    K  +A+IC G
Sbjct: 47  DVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAG 106

Query: 320 QQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPEFI 379
              L A  +  G K T +P  K  ++            +R   DG +++        EF 
Sbjct: 107 PTALLAHEIGFGSKVTTHPLAKDKMMNG---GHYTYSENRVEKDGLILTSRGPGTSFEFA 163

Query: 380 SQLMALL 386
             ++  L
Sbjct: 164 LAIVEAL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.98
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.98
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	99.98
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.98
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	99.97
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.97
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.97
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.96
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.96
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.96
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.95
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.95
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.93
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.91
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.88
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.82
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.62
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.58
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.54
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.36
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.29
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.23
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.2
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.17
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.94
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.72
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.69
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.65
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.62
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.41
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	97.28
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	97.25
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	97.2
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	97.17
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.16
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	97.13
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	97.1
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	97.01
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	97.01
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	96.89
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	96.85
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	96.71
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	96.66
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	96.63
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	96.1
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.93
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	95.32
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	95.09
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	94.1
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	93.5
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	92.48
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	92.05
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	89.76
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	88.9

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=8.2e-38  Score=264.07  Aligned_cols=166  Identities=38%  Similarity=0.675  Sum_probs=156.8

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+|+++|||+..|+..|+++|+++|++|+++|++++                +++++.|.++.++.+++++++.+||+
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~----------------~V~~~~g~~i~~d~~~~~~~~~~~d~   64 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG----------------TITGKHGYSVKVDLTFDKVNPEEFDA   64 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCSE
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc----------------eEeecCCcEEeccccHHHcCcccccE
Confidence            48999999999999999999999999999999999876                68899999999999999999889999


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcceee
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV  168 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~~v  168 (392)
                      |+||||.++..+..++++++||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.+..|++.+    +|
T Consensus        65 viipGg~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~----vV  140 (166)
T d1g2ia_          65 LVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VV  140 (166)
T ss_dssp             EEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----CE
T ss_pred             EEEecccchhhhccChHHHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCC----EE
Confidence            99999988776778999999999999999999999999999999999999999999999999999888888665    89


Q ss_pred             ecCceEecCCCCChHHHHHHHHHHhc
Q 016237          169 VDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       169 ~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                      .|||+|||+|+.++.+|++++++.|.
T Consensus       141 ~Dg~iiTs~g~~~~~~f~~~~i~~L~  166 (166)
T d1g2ia_         141 VDGNWVSSRVPADLYAWMREFVKLLK  166 (166)
T ss_dssp             EETTEEEECSGGGHHHHHHHHHHHHC
T ss_pred             EeCCEEECCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999874

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.1e-36  Score=255.32  Aligned_cols=166  Identities=36%  Similarity=0.651  Sum_probs=157.0

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      +|+++++++++++.|+..|+++|+++||+++++|+++++                ++++.|..+.++..++++++.+||+
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~----------------V~~~~g~~i~~d~~~~~~~~~~~d~   64 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT----------------ITGKHGYSVKVDLTFDKVNPEEFDA   64 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEE----------------EECTTSCEEEECEEGGGCCGGGCSE
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCce----------------EeecCCcEEeccccHHHcCcccccE
Confidence            579999999999999999999999999999999998765                7888999999999999998889999


Q ss_pred             EEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCceEE
Q 016237          282 LVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCF  361 (392)
Q Consensus       282 viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vv  361 (392)
                      |+||||.++..+..++.+.+|||++++++|+|+++|+|+++|+++|||+||++|+||...+.++++++++.+.+    +|
T Consensus        65 viipGg~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~----vV  140 (166)
T d1g2ia_          65 LVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VV  140 (166)
T ss_dssp             EEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----CE
T ss_pred             EEEecccchhhhccChHHHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCC----EE
Confidence            99999988777778999999999999999999999999999999999999999999999999999999998764    89


Q ss_pred             EcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          362 TDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       362 ~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      .|||+|||+|+.++.+|++++++.|.
T Consensus       141 ~Dg~iiTs~g~~~~~~f~~~~i~~L~  166 (166)
T d1g2ia_         141 VDGNWVSSRVPADLYAWMREFVKLLK  166 (166)
T ss_dssp             EETTEEEECSGGGHHHHHHHHHHHHC
T ss_pred             EeCCEEECCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999874

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=261.96  Aligned_cols=172  Identities=24%  Similarity=0.354  Sum_probs=156.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCC-CCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP-SKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~   86 (392)
                      +|||+|+++|||++.|+..|+++|+++|++|+++|++++.               ++.++.|+++.+|.+++++.. .+|
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~---------------~v~~~~g~~i~~d~~l~d~~~~~~~   65 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGPY   65 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHHTCCC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCc---------------ceecCCCccccCccchhccCCcccc
Confidence            4799999999999999999999999999999999988653               588999999999999987653 489


Q ss_pred             cEEEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        87 D~iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      |+|+||||.+ +..+.+++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+...+.  
T Consensus        66 D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~--  143 (186)
T d1p5fa_          66 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENR--  143 (186)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCS--
T ss_pred             cEEEEecCccccccccchHHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEeccc--
Confidence            9999999975 5557889999999999999999999999999999999999999999999999999887666665554  


Q ss_pred             eeeecCceEecCCCCChHHHHHHHHHHhcCCc
Q 016237          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~~  197 (392)
                       +|.|||+|||+|+.++.+|++++++.+.++.
T Consensus       144 -vv~Dg~iiT~~g~~~~~d~al~li~~l~g~~  174 (186)
T d1p5fa_         144 -VEKDGLILTSRGPGTSFEFALAIVEALNGKE  174 (186)
T ss_dssp             -EEEETTEEEECSGGGHHHHHHHHHHHHHCHH
T ss_pred             -EEecCCEEECCCccHHHHHHHHHHHHhcCHH
Confidence             8999999999999999999999999998775

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-36  Score=253.73  Aligned_cols=169  Identities=31%  Similarity=0.545  Sum_probs=156.5

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccc-cCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~   86 (392)
                      .|||+|+++|||+..|+..|+++|+++|++|+++|+.++.               .+.++. +.++.+|.+++++++.+|
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~~~~~v~~d~~l~~~~~~~y   65 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEF   65 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGC
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCc---------------eeeeeccCeEEecCCcHHHCChhhc
Confidence            3799999999999999999999999999999999997653               456555 489999999999999999


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~  166 (392)
                      |+|+||||++++.+..++++++||+++++++|+|+++|+|+++|+++|+|+||++|+||...+.+++.+++|.+.+.   
T Consensus        66 DalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~---  142 (170)
T d1oi4a1          66 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEV---  142 (170)
T ss_dssp             SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSC---
T ss_pred             eEEEEccchhhhhhccChHHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCCE---
Confidence            99999999988878889999999999999999999999999999999999999999999999999999999988774   


Q ss_pred             eeecCceEecCCCCChHHHHHHHHHHhc
Q 016237          167 CVVDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       167 ~v~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                      +|+|||+|||+|+.++.++++++++.|+
T Consensus       143 VVdd~~liTs~g~~~~~~fa~~~i~~Lg  170 (170)
T d1oi4a1         143 VVDKDQLVTSRTPDDLPAFNREALRLLG  170 (170)
T ss_dssp             EEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             EEECCEEEECCChhhHHHHHHHHHHHhC
Confidence            7788999999999999999999999874

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-34  Score=244.05  Aligned_cols=169  Identities=30%  Similarity=0.517  Sum_probs=156.4

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCC-CCcccccccccCCCCCCc
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP-GHNFTLTANFESVDVSGY  279 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~  279 (392)
                      .|||+|++++++++.|+..|+++|+++|++++++|+.++.               .+.++. +..+.+|..++++++++|
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~~~~~v~~d~~l~~~~~~~y   65 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEF   65 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGC
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCc---------------eeeeeccCeEEecCCcHHHCChhhc
Confidence            3789999999999999999999999999999999998653               345444 478999999999998999


Q ss_pred             CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCce
Q 016237          280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDR  359 (392)
Q Consensus       280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~  359 (392)
                      |+||||||++++.+..++.+++||+++++++|+|+++|+|+++|+++|||+||++|+||....++++.|++|.++.   .
T Consensus        66 DalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~---~  142 (170)
T d1oi4a1          66 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---V  142 (170)
T ss_dssp             SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS---C
T ss_pred             eEEEEccchhhhhhccChHHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCC---E
Confidence            9999999999888889999999999999999999999999999999999999999999999999999999999877   6


Q ss_pred             EEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          360 CFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       360 vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      ||+||++|||+|+.++.+|++++++.|+
T Consensus       143 VVdd~~liTs~g~~~~~~fa~~~i~~Lg  170 (170)
T d1oi4a1         143 VVDKDQLVTSRTPDDLPAFNREALRLLG  170 (170)
T ss_dssp             EEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             EEECCEEEECCChhhHHHHHHHHHHHhC
Confidence            8889999999999999999999999985

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=249.81  Aligned_cols=171  Identities=22%  Similarity=0.278  Sum_probs=155.0

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCC-CCCc
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVD-VSGY  279 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~  279 (392)
                      .||++|++++|+++.|+..|+++|+++|++|+++|++++.               +++++.|..+.+|..++++. ..+|
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~---------------~v~~~~g~~i~~d~~l~d~~~~~~~   65 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGPY   65 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHHTCCC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCc---------------ceecCCCccccCccchhccCCcccc
Confidence            3799999999999999999999999999999999998652               37888999999999888764 3589


Q ss_pred             CEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237          280 DALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID  358 (392)
Q Consensus       280 D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~  358 (392)
                      |+|+||||.+ +..+..++.+.+|||++++++++|+++|+|+++|+++|||+||++|+||...+.+++.+..+..+.   
T Consensus        66 D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---  142 (186)
T d1p5fa_          66 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---  142 (186)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC---
T ss_pred             cEEEEecCccccccccchHHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEecc---
Confidence            9999999975 556888999999999999999999999999999999999999999999999999987777666555   


Q ss_pred             eEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          359 RCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       359 ~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      .+|.|||+|||+|+.++.+|++++++++.|+
T Consensus       143 ~vv~Dg~iiT~~g~~~~~d~al~li~~l~g~  173 (186)
T d1p5fa_         143 RVEKDGLILTSRGPGTSFEFALAIVEALNGK  173 (186)
T ss_dssp             SEEEETTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             cEEecCCEEECCCccHHHHHHHHHHHHhcCH
Confidence            5999999999999999999999999999875

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.98  E-value=1.8e-32  Score=234.96  Aligned_cols=166  Identities=24%  Similarity=0.357  Sum_probs=148.1

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHh-cCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQA-LECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~-~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      |+|++++++++|++.|+..+.+.|++ +|++++++|+++++                ++++.|..+.+|..++++++.+|
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~----------------V~s~~G~~v~~d~~l~~~~~~~~   64 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMP----------------VTSMGGLKVTPDTSYDALDPVDI   64 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSC----------------EECTTCCEEECSEEGGGCCTTTC
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCc----------------EEcCCCCEEeecCchHHCChhhc
Confidence            68999999999999999999999986 79999999999875                78899999999999999988999


Q ss_pred             CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHH-HH--HcCCeeeCCCC
Q 016237          280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLN-VL--LAGASWLEPDP  356 (392)
Q Consensus       280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~-~~--~~~~~~~~~~~  356 (392)
                      |+|+||||.+... ..++.+.+|||++++++++|+++|+|+++|+++|||+||++|+|+..... +.  .++..+.++. 
T Consensus        65 D~liipGG~~~~~-~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~-  142 (188)
T d2fexa1          65 DALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP-  142 (188)
T ss_dssp             SEEEECCBSHHHH-TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS-
T ss_pred             cEEEecCCccccc-cccHHHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCC-
Confidence            9999999987644 56788999999999999999999999999999999999999999765443 32  3467777665 


Q ss_pred             CceEEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          357 IDRCFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       357 ~~~vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                        .+|.|||+|||+| +++.||+++++++|.
T Consensus       143 --~vV~DgnliTs~G-~aa~d~al~ii~~L~  170 (188)
T d2fexa1         143 --RAVSDGGVVTAAG-SAPVSFAVEILKSLG  170 (188)
T ss_dssp             --SCEEETTEEEECT-TCHHHHHHHHHHHTT
T ss_pred             --EEEECCCEEECCC-chHHHHHHHHHHHhc
Confidence              6899999999998 679999999999985

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.98  E-value=3e-32  Score=239.33  Aligned_cols=185  Identities=22%  Similarity=0.376  Sum_probs=155.3

Q ss_pred             CEEEEEecC----------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCc
Q 016237            9 RSVLLLCGD----------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF   78 (392)
Q Consensus         9 ~kI~ill~~----------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (392)
                      |||+|++.+          |++..|+..|+++|+++|++|+++|+.+++...+..++....   .........+..+..+
T Consensus         3 KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~---~~~~~~~~~l~~~~~l   79 (221)
T d1u9ca_           3 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKD---PSWAEAEAALKHTARL   79 (221)
T ss_dssp             CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCC---GGGHHHHHHTTSBEEC
T ss_pred             ceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCCcceeccCcccccc---chhHHHHHHhhCCCCh
Confidence            699999975          788889999999999999999999999887544433332221   2223334567788889


Q ss_pred             CCCCCCCccEEEEcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC------cccCCeeEecCCC-----
Q 016237           79 DEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA------DVVKGRKCTAYPP-----  146 (392)
Q Consensus        79 ~~~~~~~~D~iiipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a------gll~g~~~T~~~~-----  146 (392)
                      +++++++||+|+||||+++.. +..++.++++++++++++|+|++||||+++|+.+      ++++||++|+|+.     
T Consensus        80 ~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~  159 (221)
T d1u9ca_          80 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEERE  159 (221)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred             hHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHHhh
Confidence            999999999999999998654 8899999999999999999999999999999985      4899999999975     


Q ss_pred             ----------cHHHHHHCCCeEEcCCC-cceeeecCceEecCCCCChHHHHHHHHHHhcCC
Q 016237          147 ----------VKPVLIAAGASWIEPET-MAACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (392)
Q Consensus       147 ----------~~~~l~~~~~~~~~~~~-~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~~~  196 (392)
                                .++.+++.|+.|.+... ...+|+||||||++|+.++.++++.+++.|..+
T Consensus       160 ~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         160 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                      45567888999987643 345899999999999999999999999999765

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=4.4e-33  Score=240.05  Aligned_cols=171  Identities=23%  Similarity=0.385  Sum_probs=150.3

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      +|++|+++|||++.|+..|+++|+++|++|++++......             .+++++.|+++.+|..++++++.+||+
T Consensus         2 ~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~-------------~~v~~~~G~~v~~d~~~~d~~~~d~D~   68 (195)
T d2ab0a1           2 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEYDV   68 (195)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCCSE
T ss_pred             ceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCC-------------ceEEeCCCcEeecCcChHHcCcccceE
Confidence            6899999999999999999999999999999999765321             157888999999999999998889999


Q ss_pred             EEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhh-HHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcce
Q 016237           89 LVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (392)
Q Consensus        89 iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~~  166 (392)
                      |+||||.+ +..+.+++.+++||+++++++|+|+++|+|+ ++|+++|||+||++|+||...+.+.  +..|.+.+    
T Consensus        69 liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~--~~~~~~~~----  142 (195)
T d2ab0a1          69 IVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP--AEQWLDKR----  142 (195)
T ss_dssp             EEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSC--TTTBCCCS----
T ss_pred             EEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcc--cceEeecc----
Confidence            99999975 4557789999999999999999999999995 8999999999999999998776542  45565544    


Q ss_pred             eeecCc--eEecCCCCChHHHHHHHHHHhcCCcC
Q 016237          167 CVVDGN--IITGATYEGHPEFIRLFLKALGGTIT  198 (392)
Q Consensus       167 ~v~dg~--iiT~~g~~s~~~~~~~~i~~l~~~~~  198 (392)
                      +|+|||  +|||+|+.+++||++++++.+.+++.
T Consensus       143 vv~Dgn~~liTa~g~~a~~d~al~lie~l~g~e~  176 (195)
T d2ab0a1         143 VVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREK  176 (195)
T ss_dssp             EEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHH
T ss_pred             eEEECCCeEEECCCHHHHHHHHHHHHHHHcCHHH
Confidence            788886  79999999999999999999998763

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.98  E-value=8.3e-33  Score=237.09  Aligned_cols=166  Identities=24%  Similarity=0.379  Sum_probs=144.0

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHh-CCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |+||+|+++|||++.|+..+.+.|++ +|++++++|++++                +++++.|+++.+|..++++++.+|
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~----------------~V~s~~G~~v~~d~~l~~~~~~~~   64 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDI   64 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTC
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC----------------cEEcCCCCEEeecCchHHCChhhc
Confidence            35999999999999999999999986 8999999999986                589999999999999999998899


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHH-HHHC-CCe-EEcCCC
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV-LIAA-GAS-WIEPET  163 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~-l~~~-~~~-~~~~~~  163 (392)
                      |+|+||||.+... ..++++++||+++++++++|+++|+|+++|+++|||+|+++|+||..... +..+ +.. +.+.+ 
T Consensus        65 D~liipGG~~~~~-~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~-  142 (188)
T d2fexa1          65 DALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP-  142 (188)
T ss_dssp             SEEEECCBSHHHH-TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS-
T ss_pred             cEEEecCCccccc-cccHHHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCC-
Confidence            9999999987654 55778999999999999999999999999999999999999999754333 3332 233 33333 


Q ss_pred             cceeeecCceEecCCCCChHHHHHHHHHHhc
Q 016237          164 MAACVVDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       164 ~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                        .+|.|||+|||+| .+++|+++++++.|.
T Consensus       143 --~vV~DgnliTs~G-~aa~d~al~ii~~L~  170 (188)
T d2fexa1         143 --RAVSDGGVVTAAG-SAPVSFAVEILKSLG  170 (188)
T ss_dssp             --SCEEETTEEEECT-TCHHHHHHHHHHHTT
T ss_pred             --EEEECCCEEECCC-chHHHHHHHHHHHhc
Confidence              3899999999998 678999999999985

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.4e-32  Score=233.74  Aligned_cols=169  Identities=20%  Similarity=0.279  Sum_probs=151.1

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      +++.+++++||++.|+..|+++|+++|++++++|+.+..             ...++++.|..+.+|..+++++..+||+
T Consensus         2 ~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~-------------~~~v~~~~G~~v~~d~~~~d~~~~d~D~   68 (195)
T d2ab0a1           2 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLAITCSRGVKLLADAPLVEVADGEYDV   68 (195)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTT-------------CCEEECTTSCEEECSEEHHHHTTSCCSE
T ss_pred             ceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCC-------------CceEEeCCCcEeecCcChHHcCcccceE
Confidence            578999999999999999999999999999999986542             2347788899999999999998889999


Q ss_pred             EEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHH-HHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCce
Q 016237          282 LVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQ-QILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDR  359 (392)
Q Consensus       282 viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~  359 (392)
                      |+||||.+ +..+..++.+.+|||++++++|+|+++|+|+ ++|+++|||+||++|+||.+++.+  +++++.+.+    
T Consensus        69 liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~--~~~~~~~~~----  142 (195)
T d2ab0a1          69 IVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLDKR----  142 (195)
T ss_dssp             EEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGS--CTTTBCCCS----
T ss_pred             EEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhc--ccceEeecc----
Confidence            99999975 4567889999999999999999999999995 899999999999999999987654  678887664    


Q ss_pred             EEEcCC--eEEccCCCChHHHHHHHHHHhccc
Q 016237          360 CFTDGN--LVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       360 vv~dg~--lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                      +|.|||  +|||+|+.++.||++++++++.|+
T Consensus       143 vv~Dgn~~liTa~g~~a~~d~al~lie~l~g~  174 (195)
T d2ab0a1         143 VVWDARVKLLTSQGPGTAIDFGLKIIDLLVGR  174 (195)
T ss_dssp             EEEETTTTEEEECSGGGHHHHHHHHHHHHTCH
T ss_pred             eEEECCCeEEECCCHHHHHHHHHHHHHHHcCH
Confidence            888886  799999999999999999999875

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.3e-31  Score=235.19  Aligned_cols=187  Identities=24%  Similarity=0.378  Sum_probs=155.5

Q ss_pred             CCccEEEEeCC----------CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccc
Q 016237          200 SDKRILFLCGD----------YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTA  269 (392)
Q Consensus       200 ~~~~v~ill~~----------~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  269 (392)
                      |.|||++++.+          |+...|+..|+++|+++||+|+++|+.|++++.++.++..   ...........+..+.
T Consensus         1 M~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~---~~~~~~~~~~~l~~~~   77 (221)
T d1u9ca_           1 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINE---KDPSWAEAEAALKHTA   77 (221)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSS---CCGGGHHHHHHTTSBE
T ss_pred             CCceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCCcceeccCcccc---ccchhHHHHHHhhCCC
Confidence            56788888865          6677799999999999999999999999987766544321   1111112233456677


Q ss_pred             cccCCCCCCcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcC------CCCCceeecCchh--
Q 016237          270 NFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAAG------VLKGKKCTAYPAV--  340 (392)
Q Consensus       270 ~~~~~~~~~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~ag------lL~g~~~T~~~~~--  340 (392)
                      .+++++.++||+|+||||+++.. ++.++.+.++++++++++|+|+|||||+++|+.++      ||+||++|+||..  
T Consensus        78 ~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e  157 (221)
T d1u9ca_          78 RLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEE  157 (221)
T ss_dssp             ECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHH
T ss_pred             ChhHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHH
Confidence            78888889999999999998755 89999999999999999999999999999999865      8999999999874  


Q ss_pred             -------------HHHHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhccc
Q 016237          341 -------------KLNVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLGIQ  389 (392)
Q Consensus       341 -------------~~~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~~~  389 (392)
                                   ++.+++.|++|.+..++ ..+|.|||+||++++.++.++++++++.|..+
T Consensus       158 ~~~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         158 REVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             hhcccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                         44577889999876555 57999999999999999999999999999764

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.6e-31  Score=232.53  Aligned_cols=186  Identities=19%  Similarity=0.290  Sum_probs=150.8

Q ss_pred             CCEEEEEecC------------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCcccc-CCCCc------ccccccc
Q 016237            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVH-QSTGH------QTYSETR   68 (392)
Q Consensus         8 ~~kI~ill~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~-~~~~~------~~~~~~~   68 (392)
                      +|||+|++.+            |++..|+..|+++|+++||+|+++|+.|+++ ++..+.. .....      .......
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~-~d~~s~~~~~~~~~~~~~~~~~~~~~   80 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFG-WDEHSLAKDFLNGQDETDFKNKDSDF   80 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCC-BCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCC-CCcccccccccccHHHHHHhhhhHHH
Confidence            7899999965            7777899999999999999999999988753 2222111 11110      0011222


Q ss_pred             cCccccCcCcCCCCCCCccEEEEcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC-------cccCCee
Q 016237           69 GHNFALNATFDEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRK  140 (392)
Q Consensus        69 g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a-------gll~g~~  140 (392)
                      ...+..+.+++++++++||+|++|||++++. +.+++.++++++++++++|+|++||||+.+|+.+       ++++||+
T Consensus        81 ~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~  160 (236)
T d1qvwa_          81 NKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKS  160 (236)
T ss_dssp             HHHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCE
T ss_pred             HHHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCce
Confidence            3457788899999999999999999999765 8999999999999999999999999999999875       6999999


Q ss_pred             EecCCC-------------------cHHHHHHCCCeEEcCC--CcceeeecCceEecCCCCChHHHHHHHHHHhc
Q 016237          141 CTAYPP-------------------VKPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       141 ~T~~~~-------------------~~~~l~~~~~~~~~~~--~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                      +|+|++                   .++.+++.|+.|++..  ....+|+||||||++++.|+.++++.+++.|.
T Consensus       161 vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         161 ITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             eccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            999964                   3566778899997643  13458999999999999999999999999875

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.96  E-value=1.9e-31  Score=228.81  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=147.7

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      ++|||+||++|||+..|+..|++.|+++|+++++++++++                +++++.|.++.++.++.+.++.+|
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~----------------~v~~~~g~~v~~d~~~~~~~~~~~   65 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMV   65 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGS
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC----------------cccccccccccccccccccccccc
Confidence            4789999999999999999999999999999999999887                588999999999999999998899


Q ss_pred             cEEEEcCCCC-cccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEecCCCcHHHHHHCCCeEEcCCCcc
Q 016237           87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (392)
Q Consensus        87 D~iiipGG~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~~~~~~~~l~~~~~~~~~~~~~~  165 (392)
                      |++++|||.+ ...+..++.+.+||+++++++|+|+++|+|+++|+++|+|+||++|+||+..+.+...+..+....   
T Consensus        66 dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~---  142 (184)
T d1sy7a1          66 DAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE---  142 (184)
T ss_dssp             SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTT---
T ss_pred             eEEEEeeccccccccccccchhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccCc---
Confidence            9999999964 455778999999999999999999999999999999999999999999998876654444444443   


Q ss_pred             eeeecCceEecCCCCChHHHHHHHHH
Q 016237          166 ACVVDGNIITGATYEGHPEFIRLFLK  191 (392)
Q Consensus       166 ~~v~dg~iiT~~g~~s~~~~~~~~i~  191 (392)
                       ++.||+++|++++....+|+..+.+
T Consensus       143 -~v~dg~~it~~~~~~~~~f~~~i~~  167 (184)
T d1sy7a1         143 -SFTDAVKIAKGAAGFLGEFFYAIAQ  167 (184)
T ss_dssp             -TTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             -eEeECCEEecCCHhHHHHHHHHHHH
Confidence             7899999999998888888887764

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.8e-29  Score=225.88  Aligned_cols=187  Identities=18%  Similarity=0.250  Sum_probs=147.8

Q ss_pred             CCEEEEEecC--------------CCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCc-ccccccccCcc
Q 016237            8 KRSVLLLCGD--------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNF   72 (392)
Q Consensus         8 ~~kI~ill~~--------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~   72 (392)
                      .+||+|++.+              |+.+.|+..|++.|+++||+|+++|++|+++..+.+++...... ..........+
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~  123 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLF  123 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHH
Confidence            5799999974              88889999999999999999999999999877666665432211 00000111112


Q ss_pred             ccCcCc-----CCCCCCCccEEEEcCCCCccc-ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC----cccCCeeEe
Q 016237           73 ALNATF-----DEIDPSKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----DVVKGRKCT  142 (392)
Q Consensus        73 ~~~~~~-----~~~~~~~~D~iiipGG~~~~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a----gll~g~~~T  142 (392)
                      .....+     +..+..+||+|++|||+|+.. +.+++.+.++|+++++++|+|++||||+..|..+    ++++||++|
T Consensus       124 ~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~vT  203 (279)
T d1n57a_         124 RNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSIC  203 (279)
T ss_dssp             HSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEEC
T ss_pred             hCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeEEe
Confidence            222222     222445899999999998755 8999999999999999999999999999999876    699999999


Q ss_pred             cCCC-------------------cHHHHHHCCCeEEcCCCcceeeecCceEecCCCCChHHHHHHHHHHhc
Q 016237          143 AYPP-------------------VKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG  194 (392)
Q Consensus       143 ~~~~-------------------~~~~l~~~~~~~~~~~~~~~~v~dg~iiT~~g~~s~~~~~~~~i~~l~  194 (392)
                      ++++                   .++.|++.|+.+.+.+....+|+||||||++++.|+.++++.+++.|-
T Consensus       204 ~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll  274 (279)
T d1n57a_         204 AFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEML  274 (279)
T ss_dssp             CCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHH
T ss_pred             ecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHH
Confidence            9875                   356788899999877655569999999999999999999999998764

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-29  Score=222.34  Aligned_cols=187  Identities=20%  Similarity=0.301  Sum_probs=149.2

Q ss_pred             CccEEEEeCC------------CCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCc------cccCCCC
Q 016237          201 DKRILFLCGD------------YMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQ------TYSEKPG  262 (392)
Q Consensus       201 ~~~v~ill~~------------~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~------~~~~~~g  262 (392)
                      .|||+|++.+            |+...|+..|+++|+++||+|+++|+.|+++..+.....++....      .......
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHH
Confidence            5788888865            566669999999999999999999999886432222222221110      0011112


Q ss_pred             CcccccccccCCCCCCcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc-------CCCCCcee
Q 016237          263 HNFTLTANFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA-------GVLKGKKC  334 (392)
Q Consensus       263 ~~i~~~~~~~~~~~~~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a-------glL~g~~~  334 (392)
                      ..+..+..+++++.++||+|++|||+++.. ++.++.+.+++++++++||+|+|||||+.+|+.+       +|++||++
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~v  161 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSI  161 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCEE
T ss_pred             HHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCcee
Confidence            346667789999999999999999999765 9999999999999999999999999999999876       69999999


Q ss_pred             ecCchh-------------------HHHHHHcCCeeeCCC-CC-ceEEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          335 TAYPAV-------------------KLNVLLAGASWLEPD-PI-DRCFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       335 T~~~~~-------------------~~~~~~~~~~~~~~~-~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      |+||..                   ++.++..|++|.+.. ++ .+||.|||+||++++.++..+++++++.|.
T Consensus       162 T~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         162 TGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             CCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             ccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            999764                   445678899997543 22 469999999999999999999999999985

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.95  E-value=1.2e-29  Score=217.47  Aligned_cols=165  Identities=16%  Similarity=0.238  Sum_probs=150.5

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      +.+||.|++++|++..|+..|++.|+++|++++++|+++++                ++++.|..+.++..+.+.+..+|
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~----------------v~~~~g~~v~~d~~~~~~~~~~~   65 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSK----------------VTAANGSTVQPHHHLEGFRSTMV   65 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSC----------------EEBTTSCEECCSEETTTCCGGGS
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCCc----------------ccccccccccccccccccccccc
Confidence            46799999999999999999999999999999999999876                77888999999999999888899


Q ss_pred             CEEEEcCCCC-hhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCceeecCchhHHHHHHcCCeeeCCCCCc
Q 016237          280 DALVVPGGRA-PEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPID  358 (392)
Q Consensus       280 D~viipgg~~-~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~  358 (392)
                      |++++|||.+ ...+..++.+.+||+++++++|+|+++|+|+++|+++|+|+||++||||...+++...+.++.+..   
T Consensus        66 dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~---  142 (184)
T d1sy7a1          66 DAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE---  142 (184)
T ss_dssp             SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTT---
T ss_pred             eEEEEeeccccccccccccchhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccCc---
Confidence            9999999974 455788999999999999999999999999999999999999999999999888877777777664   


Q ss_pred             eEEEcCCeEEccCCCChHHHHHHHHH
Q 016237          359 RCFTDGNLVSGAAWPGHPEFISQLMA  384 (392)
Q Consensus       359 ~vv~dg~lvT~~g~~~~~~~~~~li~  384 (392)
                       ++.||+++|+++.....+|+.+|.+
T Consensus       143 -~v~dg~~it~~~~~~~~~f~~~i~~  167 (184)
T d1sy7a1         143 -SFTDAVKIAKGAAGFLGEFFYAIAQ  167 (184)
T ss_dssp             -TTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             -eEeECCEEecCCHhHHHHHHHHHHH
Confidence             7899999999998888899887764

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.6e-28  Score=217.39  Aligned_cols=186  Identities=19%  Similarity=0.202  Sum_probs=145.9

Q ss_pred             CccEEEEeC--------------CCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCC-ccccCCCCCcc
Q 016237          201 DKRILFLCG--------------DYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGD-QTYSEKPGHNF  265 (392)
Q Consensus       201 ~~~v~ill~--------------~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i  265 (392)
                      .+||++++.              .|+...|+..|++.|+++||+|+++|++|+++++++.++...... ..........+
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~  123 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLF  123 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHH
Confidence            568888875              388889999999999999999999999999988887776321110 00000000011


Q ss_pred             cccc-----cccCCCCCCcCEEEEcCCCChhh-ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc----CCCCCceee
Q 016237          266 TLTA-----NFESVDVSGYDALVVPGGRAPEY-LALNENVIALVKDFMEAKKPVASICHGQQILAAA----GVLKGKKCT  335 (392)
Q Consensus       266 ~~~~-----~~~~~~~~~~D~viipgg~~~~~-~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a----glL~g~~~T  335 (392)
                      ....     .....+.++||+|+||||+|+.. ++.++.+.++|++++++||+|++||||+..|..+    ++++||++|
T Consensus       124 ~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~vT  203 (279)
T d1n57a_         124 RNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSIC  203 (279)
T ss_dssp             HSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEEC
T ss_pred             hCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeEEe
Confidence            1111     12223456899999999999755 9999999999999999999999999999999887    699999999


Q ss_pred             cCch-------------------hHHHHHHcCCeeeCCCCC-ceEEEcCCeEEccCCCChHHHHHHHHHHhc
Q 016237          336 AYPA-------------------VKLNVLLAGASWLEPDPI-DRCFTDGNLVSGAAWPGHPEFISQLMALLG  387 (392)
Q Consensus       336 ~~~~-------------------~~~~~~~~~~~~~~~~~~-~~vv~dg~lvT~~g~~~~~~~~~~li~~l~  387 (392)
                      +|+.                   .++.++..|+++.+. ++ .+||.|||+||++++.++..+++.++++|.
T Consensus       204 ~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~-~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll  274 (279)
T d1n57a_         204 AFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIIND-DITGRVHKDRKLLTGDSPFAANALGKLAAQEML  274 (279)
T ss_dssp             CCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCS-SCSCCEEEETTEEEESSGGGHHHHHHHHHHHHH
T ss_pred             ecCCHHHhccchhccCcccccccHHHHHHHcCCEEECC-CCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHH
Confidence            9875                   355678899999864 34 579999999999999999999999998874

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.7e-25  Score=194.26  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=128.9

Q ss_pred             CCEEEEEec-----CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCc--cccCCCCcccccccccCccccCcCcCC
Q 016237            8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPT--AVHQSTGHQTYSETRGHNFALNATFDE   80 (392)
Q Consensus         8 ~~kI~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (392)
                      ||||+|++.     ||++..|+..|++.|+++|++|+++|+++++.....-  ........+.......+.+..+.++++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~   80 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ   80 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHH
Confidence            469999984     8999999999999999999999999998765322100  000000011122233444556678999


Q ss_pred             CCCCCccEEEEcCCCCcc-cc----------cCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCeeEec-CCCcH
Q 016237           81 IDPSKYDGLVIPGGRAPE-YL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA-YPPVK  148 (392)
Q Consensus        81 ~~~~~~D~iiipGG~~~~-~~----------~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~T~-~~~~~  148 (392)
                      +++.+||+|+||||++.. .+          +.++.++++++++++++|+|++||+|+++|+.++.+++++.++ |+...
T Consensus        81 v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~~~~~~  160 (217)
T d1vhqa_          81 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA  160 (217)
T ss_dssp             CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCSCHHHH
T ss_pred             CCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeeccChhhH
Confidence            999999999999999742 23          3468999999999999999999999999999998888885554 56677


Q ss_pred             HHHHHCCCeEEcCCCcceeee-cCceEecC
Q 016237          149 PVLIAAGASWIEPETMAACVV-DGNIITGA  177 (392)
Q Consensus       149 ~~l~~~~~~~~~~~~~~~~v~-dg~iiT~~  177 (392)
                      +.+++.|+.|++.+.+..+|+ ||||||+.
T Consensus       161 ~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         161 EVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             HHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            888889999998765444543 59999973

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.2e-24  Score=183.90  Aligned_cols=166  Identities=19%  Similarity=0.183  Sum_probs=127.6

Q ss_pred             CccEEEEe-----CCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCC-------CCccccc
Q 016237          201 DKRILFLC-----GDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKP-------GHNFTLT  268 (392)
Q Consensus       201 ~~~v~ill-----~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~i~~~  268 (392)
                      |+|+++++     +||++..|+..|++.|+++|++|+++||++++.+..     ++..++....+.       ......+
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~-----~h~~~~~~~~~r~~~~~~~~i~~~~~   75 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVI-----NHLTGEAMTETRNVLIEAARITRGEI   75 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCB-----CTTTCCBCSCCCBHHHHHTTTTTTCC
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCcccee-----ccCCCcccccccceeeeeeeeecccc
Confidence            68898887     489999999999999999999999999998864322     112222222111       1222334


Q ss_pred             ccccCCCCCCcCEEEEcCCCCh-hhc----------cCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCce-eec
Q 016237          269 ANFESVDVSGYDALVVPGGRAP-EYL----------ALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKK-CTA  336 (392)
Q Consensus       269 ~~~~~~~~~~~D~viipgg~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~-~T~  336 (392)
                      ..+++++.++||+||||||++. ..+          +.++.+.+++++|+++||+|+|||+||++|+.++.+++++ +|.
T Consensus        76 ~~l~~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~  155 (217)
T d1vhqa_          76 RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGT  155 (217)
T ss_dssp             EEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCS
T ss_pred             CChHHCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeecc
Confidence            5688888999999999999985 223          3468999999999999999999999999999999888875 455


Q ss_pred             CchhHHHHHHcCCeeeCCCCCceEEE-cCCeEEccC
Q 016237          337 YPAVKLNVLLAGASWLEPDPIDRCFT-DGNLVSGAA  371 (392)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~vv~-dg~lvT~~g  371 (392)
                      |+...+.+++.|+++++......+|+ |||+||+..
T Consensus       156 ~~~~~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTspA  191 (217)
T d1vhqa_         156 DIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPA  191 (217)
T ss_dssp             CHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEECG
T ss_pred             ChhhHHHHHHcCCcEEeccCCeEEEecCCCEEcccc
Confidence            77788899999999987543222443 499999853

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.88  E-value=5.2e-23  Score=170.53  Aligned_cols=117  Identities=19%  Similarity=0.192  Sum_probs=109.3

Q ss_pred             CCCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         7 ~~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      ++|||+||++|||+..|+..|+++|+++|+++.+++++.+                .+.++.|.++.++.++.+.++.+|
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~----------------~v~~~~G~~i~~d~t~~~~~~~~y   65 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTV   65 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc----------------cccccceeEEeeeeeeccCCcccC
Confidence            4789999999999999999999999999999999999876                588899999999999999988899


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcCcccCCee
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  140 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~  140 (392)
                      |+|+||||.+. .+..++.+++||+++|+++|+|+++|+|+++|+.+|+++++.
T Consensus        66 DaliiPGG~~~-~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          66 DAVIVPCGNIA-DIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             SEEEECCSCTH-HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             CEEEeeCCchH-HHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            99999999754 478899999999999999999999999999999999998764

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.82  E-value=8.6e-21  Score=156.97  Aligned_cols=117  Identities=16%  Similarity=0.237  Sum_probs=108.4

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      ..+||+|+++++++..|+..|++.|+++|+++++++++.++                +.+..|..+.++.++.+.+..+|
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~----------------v~~~~G~~i~~d~t~~~~~~~~y   65 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGE----------------VTADDGTVLPIAATFAGAPSLTV   65 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSE----------------EECTTSCEEECCEETTTSCGGGC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc----------------ccccceeEEeeeeeeccCCcccC
Confidence            46799999999999999999999999999999999998775                67888999999999999988899


Q ss_pred             CEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHcCCCCCce
Q 016237          280 DALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKK  333 (392)
Q Consensus       280 D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~aglL~g~~  333 (392)
                      |+|+||||.+. .+..++.+++||+++++++|+|+++|+|+++|+.+|+++++.
T Consensus        66 DaliiPGG~~~-~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          66 DAVIVPCGNIA-DIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             SEEEECCSCTH-HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             CEEEeeCCchH-HHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            99999999754 578899999999999999999999999999999999998865

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.62  E-value=2.2e-08  Score=84.84  Aligned_cols=86  Identities=22%  Similarity=0.384  Sum_probs=66.2

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      ++||+||.++|    .+......|++.|+++.++...                                  +++  .+||
T Consensus         6 ~mkIgii~~~G----n~~s~~~al~~~G~~~~~v~~~----------------------------------~~l--~~~D   45 (202)
T d1q7ra_           6 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS----------------------------------EQL--EGLD   45 (202)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG----------------------------------GGG--TTCS
T ss_pred             CCEEEEEECCC----CHHHHHHHHHHCCCcEEEECCH----------------------------------HHH--hcCC
Confidence            46899998876    2455678999999998887421                                  222  3799


Q ss_pred             EEEEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +||+|||...  ........+.++|+++.++++|+.+||.|.++|++.
T Consensus        46 ~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~   93 (202)
T d1q7ra_          46 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR   93 (202)
T ss_dssp             EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             EEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhh
Confidence            9999998632  222344567899999999999999999999999864

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.58  E-value=3.4e-08  Score=83.18  Aligned_cols=86  Identities=23%  Similarity=0.349  Sum_probs=65.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      |+||+||-++|-    +......|+++|+++.++...                                  ++  .+++|
T Consensus         1 m~~igv~~~~G~----~~~~~~al~~~G~~~~~i~~~----------------------------------~~--l~~~D   40 (195)
T d2nv0a1           1 MLTIGVLGLQGA----VREHIHAIEACGAAGLVVKRP----------------------------------EQ--LNEVD   40 (195)
T ss_dssp             CCEEEEECSSSC----CHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCS
T ss_pred             CcEEEEEecCCh----HHHHHHHHHHCCCcEEEECCH----------------------------------HH--HhhCC
Confidence            469999999863    244578899999998887431                                  12  23689


Q ss_pred             EEEEcCCCCc--ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .||+|||...  ........+.++|+++.++++|+.+||.|.++|++.
T Consensus        41 ~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          41 GLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            9999998642  223344457788999999999999999999999875

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.54  E-value=1.1e-07  Score=82.88  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+||.++|.+  .=.....+|+.+|+++..+....                              ..-...+..+||
T Consensus         6 kpkvaVl~~pGtN--cd~e~~~Af~~aG~~~~~v~~~d------------------------------l~~~~~~L~~~~   53 (262)
T d1t3ta2           6 RPKVAVLREQGVN--SHVEMAAAFHRAGFDAIDVHMSD------------------------------LLGGRIGLGNFH   53 (262)
T ss_dssp             CCEEEEEECTTBC--CHHHHHHHHHHTTCEEEEEEHHH------------------------------HHHTSCCGGGCS
T ss_pred             CCeEEEEeCCCCC--cHHHHHHHHHHcCCceEEEEeee------------------------------cccCcccccccc
Confidence            4699999999977  44555579999999998886431                              001112345799


Q ss_pred             EEEEcCCCCc-cccc----------CCHHHHHHHHHHHh-CCCeEEEEchhhHHhhcCc-ccCC
Q 016237           88 GLVIPGGRAP-EYLA----------MNDSVIDLVRKFSN-SGKTIASICHGQLILAAAD-VVKG  138 (392)
Q Consensus        88 ~iiipGG~~~-~~~~----------~~~~l~~~l~~~~~-~~~~i~aic~G~~~La~ag-ll~g  138 (392)
                      +|++|||.+- +.+.          .+..+.+.+.+++. .+++|.+||+|.++|.+.| |+.|
T Consensus        54 ~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg  117 (262)
T d1t3ta2          54 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG  117 (262)
T ss_dssp             EEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTT
T ss_pred             eEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCC
Confidence            9999999753 2222          24455666666665 5899999999999999986 5544

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=4e-07  Score=79.35  Aligned_cols=100  Identities=15%  Similarity=0.218  Sum_probs=73.3

Q ss_pred             CCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCc
Q 016237          200 SDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGY  279 (392)
Q Consensus       200 ~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  279 (392)
                      ...|++|+.++|.+  .-.....+|+.+|++++.+...                              +..-...+..+|
T Consensus         5 ~kpkvaVl~~pGtN--cd~e~~~Af~~aG~~~~~v~~~------------------------------dl~~~~~~L~~~   52 (262)
T d1t3ta2           5 ARPKVAVLREQGVN--SHVEMAAAFHRAGFDAIDVHMS------------------------------DLLGGRIGLGNF   52 (262)
T ss_dssp             CCCEEEEEECTTBC--CHHHHHHHHHHTTCEEEEEEHH------------------------------HHHHTSCCGGGC
T ss_pred             CCCeEEEEeCCCCC--cHHHHHHHHHHcCCceEEEEee------------------------------ecccCccccccc
Confidence            35799999999987  6666778999999998887432                              111122345689


Q ss_pred             CEEEEcCCCCh-hhc----------cCChHHHHHHHHHHH-cCCcEEEEehHHHHHHHcC-CCCC
Q 016237          280 DALVVPGGRAP-EYL----------ALNENVIALVKDFME-AKKPVASICHGQQILAAAG-VLKG  331 (392)
Q Consensus       280 D~viipgg~~~-~~~----------~~~~~l~~~l~~~~~-~g~~i~aiC~G~~~La~ag-lL~g  331 (392)
                      |+|+||||++. +++          ..+..+.+.+.+|+. .+++|.+||+|.++|.+.| |+.|
T Consensus        53 ~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg  117 (262)
T d1t3ta2          53 HALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG  117 (262)
T ss_dssp             SEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTT
T ss_pred             ceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCC
Confidence            99999999853 222          335566667777775 5899999999999999986 5554

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=1e-06  Score=75.83  Aligned_cols=94  Identities=17%  Similarity=0.122  Sum_probs=69.2

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+|+-...++  +.....+.|++.|++++++-+..+                            +...++  ..+||
T Consensus         3 ~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~----------------------------~~~p~~--l~~~d   50 (230)
T d1o1ya_           3 HVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKG----------------------------EKLERP--LEEYS   50 (230)
T ss_dssp             CCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGT----------------------------CCCSSC--GGGCS
T ss_pred             ceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCC----------------------------CcCCcc--hhhCC
Confidence            3689998876665  566778999999999999865421                            001122  34799


Q ss_pred             EEEEcCCC-Cccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGR-APEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~-~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +|||+||. ++..   ..-.....++|+++.++++|+.+||.|.++|+.+
T Consensus        51 ~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          51 LVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             EEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence            99999986 3321   1123467899999999999999999999999975

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.23  E-value=7.1e-07  Score=75.25  Aligned_cols=88  Identities=27%  Similarity=0.353  Sum_probs=66.8

Q ss_pred             CCCccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCC
Q 016237          199 GSDKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSG  278 (392)
Q Consensus       199 ~~~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  278 (392)
                      ...+||.|+.+.| +   +......|++.|+++.++..                                  .++  ..+
T Consensus         4 ~~~mkIgii~~~G-n---~~s~~~al~~~G~~~~~v~~----------------------------------~~~--l~~   43 (202)
T d1q7ra_           4 QSNMKIGVLGLQG-A---VREHVRAIEACGAEAVIVKK----------------------------------SEQ--LEG   43 (202)
T ss_dssp             CCCCEEEEESCGG-G---CHHHHHHHHHTTCEEEEECS----------------------------------GGG--GTT
T ss_pred             ccCCEEEEEECCC-C---HHHHHHHHHHCCCcEEEECC----------------------------------HHH--Hhc
Confidence            3568999998865 2   45556899999998777732                                  011  236


Q ss_pred             cCEEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          279 YDALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       279 ~D~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +|.||||||...  ........+.++|+++.++++|+.+||.|.++|+..
T Consensus        44 ~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~   93 (202)
T d1q7ra_          44 LDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR   93 (202)
T ss_dssp             CSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             CCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhh
Confidence            899999998642  223445778899999999999999999999999864

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=8.7e-07  Score=74.26  Aligned_cols=86  Identities=23%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+||.|+-++|.    +......|+++|+++.++...                                  ++  .+++|
T Consensus         1 m~~igv~~~~G~----~~~~~~al~~~G~~~~~i~~~----------------------------------~~--l~~~D   40 (195)
T d2nv0a1           1 MLTIGVLGLQGA----VREHIHAIEACGAAGLVVKRP----------------------------------EQ--LNEVD   40 (195)
T ss_dssp             CCEEEEECSSSC----CHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCS
T ss_pred             CcEEEEEecCCh----HHHHHHHHHHCCCcEEEECCH----------------------------------HH--HhhCC
Confidence            678999988752    344578899999988777321                                  11  23689


Q ss_pred             EEEEcCCCCh--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||+|||...  ..+.....+.++|+++.++++|+.+||.|.++|+++
T Consensus        41 ~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          41 GLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            9999998642  223445567889999999999999999999999875

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=3e-06  Score=72.75  Aligned_cols=94  Identities=19%  Similarity=0.313  Sum_probs=69.1

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      .+|+.++-....+  +.....++|++.|++++++-+..+.                             .+.+ +.++||
T Consensus         3 ~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~~-----------------------------~~p~-~l~~~d   50 (230)
T d1o1ya_           3 HVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKGE-----------------------------KLER-PLEEYS   50 (230)
T ss_dssp             CCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGTC-----------------------------CCSS-CGGGCS
T ss_pred             ceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCCC-----------------------------cCCc-chhhCC
Confidence            3566666655555  7778899999999999888553110                             0111 234799


Q ss_pred             EEEEcCCCChh----hccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPE----YLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~----~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+||+||+...    ..+....+.++|+++.++++|+.+||.|.++|+.+
T Consensus        51 ~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          51 LVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             EEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence            99999987421    12345677899999999999999999999999988

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.72  E-value=2.8e-05  Score=64.71  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             CCEEEEEec-CCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCc
Q 016237            8 KRSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKY   86 (392)
Q Consensus         8 ~~kI~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   86 (392)
                      |+||+|+=+ ++|.    ......|++.|.++.++..+                               .+..++  ..|
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d-------------------------------~~~~~~--~~~   43 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPND-------------------------------IDSSEL--DGL   43 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETT-------------------------------SCGGGG--TTC
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCC-------------------------------CCHHHH--hcC
Confidence            458888765 3332    34567888889877776422                               122333  379


Q ss_pred             cEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        87 D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      |.||++||.+... .....+..+++...++++|+.+||.|.++|+.+
T Consensus        44 dgiIl~Gg~~~~~-~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          44 DGLVLSGGAPNID-EELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             SEEEEEEECSCGG-GTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             CcEEEeccccccc-cccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence            9999999864221 123345666666677899999999999999875

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=1.8e-05  Score=66.21  Aligned_cols=50  Identities=30%  Similarity=0.531  Sum_probs=38.7

Q ss_pred             CCccEEEEcC-CC-Cc-ccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           84 SKYDGLVIPG-GR-AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        84 ~~~D~iiipG-G~-~~-~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ..+|.||+|| |. +. ....++..+.+.|+++.++++||.+||.|.++|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhhhcccccccccccccccceEEEEecceeEEeee
Confidence            3689999999 53 21 111233467889999999999999999999999864

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.62  E-value=7.9e-05  Score=61.90  Aligned_cols=89  Identities=19%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      |+|++++=+-...   .......|++.|.+++++..+                               ....+  ..+||
T Consensus         1 m~ki~iiD~g~~~---~~~i~r~l~~lg~~~~i~~~d-------------------------------~~~~~--~~~~d   44 (196)
T d2a9va1           1 MLKIYVVDNGGQW---THREWRVLRELGVDTKIVPND-------------------------------IDSSE--LDGLD   44 (196)
T ss_dssp             CCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETT-------------------------------SCGGG--GTTCS
T ss_pred             CCEEEEEECCCcH---HHHHHHHHHHCCCeEEEEeCC-------------------------------CCHHH--HhcCC
Confidence            5677776543222   234567788888776665321                               12222  23789


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .||++||.+... .....+..+++...++++|+.+||.|-++|+.+
T Consensus        45 giIl~Gg~~~~~-~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          45 GLVLSGGAPNID-EELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             EEEEEEECSCGG-GTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             cEEEeccccccc-cccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence            999999875322 222344555555667899999999999999987

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.41  E-value=3.8e-05  Score=64.90  Aligned_cols=49  Identities=33%  Similarity=0.526  Sum_probs=34.3

Q ss_pred             CccEEEEcCCCCcc----cccCCHHHHHHHHHHH-hCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~----~~~~~~~l~~~l~~~~-~~~~~i~aic~G~~~La~a  133 (392)
                      ++|.||||||.+..    .+.....+.+.|.+++ .+++||.+||.|.++|+..
T Consensus        42 ~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          42 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence            78999999975321    1222334445455554 5799999999999999875

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00022  Score=60.44  Aligned_cols=87  Identities=20%  Similarity=0.238  Sum_probs=64.0

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      .||+++=+ |..    ...+..|++.|..+.++..+.                               +.+++...+||+
T Consensus        40 ~~i~~~D~-G~k----~~ilr~l~~~~~~~~v~p~~~-------------------------------~~~~i~~~~pdg   83 (228)
T d1a9xb2          40 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT-------------------------------SAEDVLKMNPDG   83 (228)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC-------------------------------CHHHHHTTCCSE
T ss_pred             ceEEEEeC-CCc----HHhHhHHHhcCceEEEcCCCC-------------------------------CHHHHHhcCCCE
Confidence            35555532 333    224589999999999987652                               234444447999


Q ss_pred             EEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||+.||.|-.  .+.....+.++++.+.+.||.+||-|-++|+.+
T Consensus        84 ivlS~GPg~P--~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2          84 IFLSNGPGDP--APCDYAITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             EEECCCSBCS--TTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             EEEeCCCCcc--ccchhHHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence            9999998633  245668889999999999999999999999976

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=0.00029  Score=57.80  Aligned_cols=75  Identities=17%  Similarity=0.333  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCCh
Q 016237          218 AVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNE  297 (392)
Q Consensus       218 ~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~  297 (392)
                      ......|++.|++++++..+.                               .+++...-.+|.|+++||.+.   +...
T Consensus        14 ~~i~~~L~~~G~~~~v~~~~~-------------------------------~~~~~~~~~~~gvilsgg~~~---~~~~   59 (188)
T d1wl8a1          14 HRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGIIFSGGPSL---ENTG   59 (188)
T ss_dssp             HHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEEECCCSCT---TCCT
T ss_pred             HHHHHHHHHCCCeEEEEeCCC-------------------------------CHHHHhhhccceeeeccCccc---cccc
Confidence            356788999999998885431                               122222235799999998764   3355


Q ss_pred             HHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          298 NVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       298 ~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ....++++..+.++|+.+||.|-++|+.+
T Consensus        60 ~~~~~i~~~~~~~~PiLGIClG~Q~l~~~   88 (188)
T d1wl8a1          60 NCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (188)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             ccccccccccccccceeehhhhhhhhhhh
Confidence            67788888899999999999999999986

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.20  E-value=0.0007  Score=55.47  Aligned_cols=86  Identities=24%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             CEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccE
Q 016237            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDG   88 (392)
Q Consensus         9 ~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~   88 (392)
                      |||+||=+   -..-+.....+|++.|+++.+++..                                  +++  .++|.
T Consensus         1 Mki~IiD~---G~gN~~si~~~l~~lg~~~~i~~~~----------------------------------~~i--~~~d~   41 (195)
T d1ka9h_           1 MKALLIDY---GSGNLRSAAKALEAAGFSVAVAQDP----------------------------------KAH--EEADL   41 (195)
T ss_dssp             CEEEEECS---SCSCHHHHHHHHHHTTCEEEEESST----------------------------------TSC--SSCSE
T ss_pred             CEEEEEeC---CCcHHHHHHHHHHHCCCeEEEECCH----------------------------------HHH--HHHhh
Confidence            46776533   2225666888999999998886421                                  222  36899


Q ss_pred             EEEcCCCCcc---cccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           89 LVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        89 iiipGG~~~~---~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +++|||....   .......+...+.+....++++.++|.|.++|+..
T Consensus        42 lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          42 LVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             EEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             hhcCCCccccchhhhccccCCcccccccccccchhhhhhhhhheeeec
Confidence            9999986422   22334456678888899999999999999999864

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=0.00026  Score=58.14  Aligned_cols=75  Identities=19%  Similarity=0.342  Sum_probs=56.5

Q ss_pred             HHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCH
Q 016237           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMND  104 (392)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~  104 (392)
                      ......|++.|++++++..+.                               ++++++.-.+|.|+++||.+..   ...
T Consensus        14 ~~i~~~L~~~G~~~~v~~~~~-------------------------------~~~~~~~~~~~gvilsgg~~~~---~~~   59 (188)
T d1wl8a1          14 HRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGIIFSGGPSLE---NTG   59 (188)
T ss_dssp             HHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEEECCCSCTT---CCT
T ss_pred             HHHHHHHHHCCCeEEEEeCCC-------------------------------CHHHHhhhccceeeeccCcccc---ccc
Confidence            356788999999999885432                               1333333368999999986533   344


Q ss_pred             HHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       105 ~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ....++++..+.++|+.+||.|-++|+.+
T Consensus        60 ~~~~~i~~~~~~~~PiLGIClG~Q~l~~~   88 (188)
T d1wl8a1          60 NCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (188)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             ccccccccccccccceeehhhhhhhhhhh
Confidence            56778888899999999999999999865

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=3.8e-05  Score=64.08  Aligned_cols=49  Identities=31%  Similarity=0.609  Sum_probs=38.6

Q ss_pred             CCcCEEEEcC-CC-Ch--hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          277 SGYDALVVPG-GR-AP--EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       277 ~~~D~viipg-g~-~~--~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+|.||+|| |. +.  ..+ .+..+.+.|+++.++++||.+||.|.++|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeEEeee
Confidence            4689999999 53 21  223 23467889999999999999999999999864

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.13  E-value=0.00016  Score=59.78  Aligned_cols=78  Identities=18%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEcCCCCcccccCCHH
Q 016237           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIPGGRAPEYLAMNDS  105 (392)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiipGG~~~~~~~~~~~  105 (392)
                      .+.+.|++.|.++.++..+..                              +++++..-.+|.|++.||.+...-..+..
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~------------------------------~~~~i~~~~~~gvilsgGp~~~~~~~~~~   65 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             HHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHHhhCCCccccCCCCCccccccccc
Confidence            446789999999988865421                              12333333589999999875322112233


Q ss_pred             HHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237          106 VIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus       106 l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ...++.+....++|+.+||-|.++|+.+
T Consensus        66 ~~~~i~~~~~~~~PiLGIClG~Qll~~~   93 (195)
T d1qdlb_          66 VSLDVIKYLGKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             THHHHHHHHTTTSCEEEETHHHHHHHHH
T ss_pred             cchhhhhhhcCCCCEEEeehhhhhhhhc
Confidence            4456777888999999999999999865

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=0.00034  Score=57.75  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChH
Q 016237          219 VPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNEN  298 (392)
Q Consensus       219 ~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~  298 (392)
                      ...+.|++.|.+++++..+..                              .++++...++|.|++.||.+...-..+..
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~------------------------------~~~~i~~~~~~gvilsgGp~~~~~~~~~~   65 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             HHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHHhhCCCccccCCCCCccccccccc
Confidence            456789999999888864311                              11222223579999999987432112223


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          299 VIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       299 l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ...++.++..+++|+.+||.|-++|+.+
T Consensus        66 ~~~~i~~~~~~~~PiLGIClG~Qll~~~   93 (195)
T d1qdlb_          66 VSLDVIKYLGKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             THHHHHHHHTTTSCEEEETHHHHHHHHH
T ss_pred             cchhhhhhhcCCCCEEEeehhhhhhhhc
Confidence            4456777788999999999999999987

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00049  Score=58.24  Aligned_cols=74  Identities=26%  Similarity=0.389  Sum_probs=57.6

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEcCCCChhhccCChHH
Q 016237          220 PFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENV  299 (392)
Q Consensus       220 ~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viipgg~~~~~~~~~~~l  299 (392)
                      .+..|++.|+.++++..+                               ...+++...++|.||+.+|+|...  .....
T Consensus        53 ilr~l~~~~~~~~v~p~~-------------------------------~~~~~i~~~~pdgivlS~GPg~P~--~~~~~   99 (228)
T d1a9xb2          53 ILRMLVDRGCRLTIVPAQ-------------------------------TSAEDVLKMNPDGIFLSNGPGDPA--PCDYA   99 (228)
T ss_dssp             HHHHHHHTTEEEEEEETT-------------------------------CCHHHHHTTCCSEEEECCCSBCST--TCHHH
T ss_pred             hHhHHHhcCceEEEcCCC-------------------------------CCHHHHHhcCCCEEEEeCCCCccc--cchhH
Confidence            448888999999888664                               123333334689999999998422  34567


Q ss_pred             HHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          300 IALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       300 ~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+.++++.+.+.||.+||-|-++|+.+
T Consensus       100 ~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2         100 ITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             HHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence            888999888999999999999999988

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=97.01  E-value=0.00027  Score=58.30  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             EEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCEEEEc
Q 016237          206 FLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVP  285 (392)
Q Consensus       206 ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~viip  285 (392)
                      |++.|.+.... ....+.|++.|+++.++..+...                           +...+++...++|.|++.
T Consensus         3 iliiD~~DSFt-~ni~~~l~~lG~~~~v~~~~~~~---------------------------~~~~~~l~~~~~~~iils   54 (192)
T d1i7qb_           3 ILLLDNVDSFT-YNLVDQLRASGHQVVIYRNQIGA---------------------------EVIIERLQHMEQPVLMLS   54 (192)
T ss_dssp             EEEEECSCSSH-HHHHHHHHHTTCEEEEEETTSCH---------------------------HHHHHHHHHCSSEEEEEC
T ss_pred             EEEEECCCcHH-HHHHHHHHHCCCeEEEEeCCCcc---------------------------cccHHHHHhcCCCeEEec
Confidence            34455444222 23677899999999988654211                           111222222368999998


Q ss_pred             CCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          286 GGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       286 gg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ||++...   +.....++++..++++|+.+||-|-++|+.+
T Consensus        55 ~Gpg~~~---~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~   92 (192)
T d1i7qb_          55 PGPGTPS---EAGCMPELLQRLRGQLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             CCSSCGG---GSTTHHHHHHHHBTTBCEEEETHHHHHHHHH
T ss_pred             Ccccccc---ccccchhhHHhhhcCccEEeeeHHHHHHHHH
Confidence            8887433   2223456778888999999999999999988

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.89  E-value=0.00028  Score=59.31  Aligned_cols=49  Identities=29%  Similarity=0.500  Sum_probs=34.7

Q ss_pred             CcCEEEEcCCCChh----hccCChHHHHHHHHHH-HcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPE----YLALNENVIALVKDFM-EAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~----~~~~~~~l~~~l~~~~-~~g~~i~aiC~G~~~La~a  326 (392)
                      ++|.||||||....    .+.....+.+.|.+++ .+++||.+||.|.++|+..
T Consensus        42 ~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          42 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence            68999999975421    1223344445555555 5799999999999999865

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=96.85  E-value=0.00031  Score=57.96  Aligned_cols=90  Identities=14%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             EEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCccEEEEc
Q 016237           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYDGLVIP   92 (392)
Q Consensus        13 ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D~iiip   92 (392)
                      ||+-|.++.. ...+.+.|++.|+++.++..+...                           +...+++...++|+|++.
T Consensus         3 iliiD~~DSF-t~ni~~~l~~lG~~~~v~~~~~~~---------------------------~~~~~~l~~~~~~~iils   54 (192)
T d1i7qb_           3 ILLLDNVDSF-TYNLVDQLRASGHQVVIYRNQIGA---------------------------EVIIERLQHMEQPVLMLS   54 (192)
T ss_dssp             EEEEECSCSS-HHHHHHHHHHTTCEEEEEETTSCH---------------------------HHHHHHHHHCSSEEEEEC
T ss_pred             EEEEECCCcH-HHHHHHHHHHCCCeEEEEeCCCcc---------------------------cccHHHHHhcCCCeEEec
Confidence            3444555521 123577899999999998654310                           111222223368999998


Q ss_pred             CCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        93 GG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      ||.+....   .....++++..++++|+.+||-|.++|+.+
T Consensus        55 ~Gpg~~~~---~~~~~~i~~~l~~~iPiLGIClG~Q~la~~   92 (192)
T d1i7qb_          55 PGPGTPSE---AGCMPELLQRLRGQLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             CCSSCGGG---STTHHHHHHHHBTTBCEEEETHHHHHHHHH
T ss_pred             Cccccccc---cccchhhHHhhhcCccEEeeeHHHHHHHHH
Confidence            88764331   122345677888999999999999999975

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00021  Score=59.55  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             CCEEEEEecCCCCccchHHHHHHHHhCCCeEEEECCCCCCCCCCCccccCCCCcccccccccCccccCcCcCCCCCCCcc
Q 016237            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPSKYD   87 (392)
Q Consensus         8 ~~kI~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~D   87 (392)
                      .+||+||=+ |..  -.......|++.|+++++++.+.                               +.++.....+|
T Consensus         5 ~~kI~IiD~-G~~--~~~~I~r~lr~lg~~~~I~~~d~-------------------------------~~~~~~~~~~~   50 (205)
T d1gpma2           5 KHRILILDF-GSQ--YTQLVARRVRELGVYCELWAWDV-------------------------------TEAQIRDFNPS   50 (205)
T ss_dssp             SSEEEEEEC-SCT--THHHHHHHHHHTTCEEEEEESCC-------------------------------CHHHHHHHCCS
T ss_pred             cCeEEEEEC-Cch--HHHHHHHHHHHCCCEEEEECCCC-------------------------------CHHHHhhcCCC
Confidence            679998854 221  12335578999999999886542                               11222223689


Q ss_pred             EEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        88 ~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      .+++.||.+...   +.....++++..+.++|+.+||-|.++|+.+
T Consensus        51 giils~gp~~~~---~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          51 GIILSGGPESTT---EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             EEEECCCSSCTT---STTCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             eEEecCCCCccc---hhhhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence            999999975321   1112234556677899999999999999975

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=96.66  E-value=0.0018  Score=56.20  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=44.9

Q ss_pred             CcCCCCCCCccEEEEcCCC-Cccc---ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           77 TFDEIDPSKYDGLVIPGGR-APEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        77 ~~~~~~~~~~D~iiipGG~-~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +++++....||++||.|+. +...   ..-=+++.++++....+.+.+.+||-|.++++.+
T Consensus        75 ~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             CHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             hHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            5666666789999999986 3211   2223689999999999999999999999998865

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.0026  Score=51.80  Aligned_cols=86  Identities=20%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             ccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcCE
Q 016237          202 KRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDA  281 (392)
Q Consensus       202 ~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  281 (392)
                      ||++|+=+..-   -+......|++.|+++.+++..                                  ++  ..++|.
T Consensus         1 Mki~IiD~G~g---N~~si~~~l~~lg~~~~i~~~~----------------------------------~~--i~~~d~   41 (195)
T d1ka9h_           1 MKALLIDYGSG---NLRSAAKALEAAGFSVAVAQDP----------------------------------KA--HEEADL   41 (195)
T ss_dssp             CEEEEECSSCS---CHHHHHHHHHHTTCEEEEESST----------------------------------TS--CSSCSE
T ss_pred             CEEEEEeCCCc---HHHHHHHHHHHCCCeEEEECCH----------------------------------HH--HHHHhh
Confidence            34555543322   4666888899999887775321                                  11  235799


Q ss_pred             EEEcCCCChhh---ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          282 LVVPGGRAPEY---LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       282 viipgg~~~~~---~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +++||+.....   ..........+.+....++|+.++|.|.++|+..
T Consensus        42 lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          42 LVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             EEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             hhcCCCccccchhhhccccCCcccccccccccchhhhhhhhhheeeec
Confidence            99999765322   3444456678888889999999999999999865

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.001  Score=55.26  Aligned_cols=89  Identities=19%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             CccEEEEeCCCCCcchhHHHHHHHHhcCCeEEEEcCCCCCCCCCCCcccCCCCCccccCCCCCcccccccccCCCCCCcC
Q 016237          201 DKRILFLCGDYMEDYEVAVPFQSLQALECHVDAVCPKKKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYD  280 (392)
Q Consensus       201 ~~~v~ill~~~~~~~e~~~~~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  280 (392)
                      ..||+|+=+- ..  -.......+++.|+++++++.+..                               .++.....+|
T Consensus         5 ~~kI~IiD~G-~~--~~~~I~r~lr~lg~~~~I~~~d~~-------------------------------~~~~~~~~~~   50 (205)
T d1gpma2           5 KHRILILDFG-SQ--YTQLVARRVRELGVYCELWAWDVT-------------------------------EAQIRDFNPS   50 (205)
T ss_dssp             SSEEEEEECS-CT--THHHHHHHHHHTTCEEEEEESCCC-------------------------------HHHHHHHCCS
T ss_pred             cCeEEEEECC-ch--HHHHHHHHHHHCCCEEEEECCCCC-------------------------------HHHHhhcCCC
Confidence            4566666542 21  122345778899999888865411                               1111112579


Q ss_pred             EEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          281 ALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       281 ~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      .+++.||.+...   +.....++++..+.++|+.+||.|-++|+.+
T Consensus        51 giils~gp~~~~---~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          51 GIILSGGPESTT---EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             EEEECCCSSCTT---STTCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             eEEecCCCCccc---hhhhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence            999999987422   1122234555667899999999999999986

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.93  E-value=0.0049  Score=53.40  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             cccccCCCCCCcCEEEEcCCCC-h---hhccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          268 TANFESVDVSGYDALVVPGGRA-P---EYLALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       268 ~~~~~~~~~~~~D~viipgg~~-~---~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      ..+++++...+||++||.|+.- .   +..+.-+++.++++...++.+++.++|-|.++++.+
T Consensus        73 y~~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          73 YKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             EECHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             chhHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            3467777777899999999863 2   123455899999999999999999999999999977

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.012  Score=49.82  Aligned_cols=46  Identities=33%  Similarity=0.471  Sum_probs=39.4

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA  324 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La  324 (392)
                      ..++|.|+||||+|.   +..+--+..++.+.+++.|..+||.|-+++.
T Consensus        55 L~~~dGIlvPGGFG~---RG~eGki~ai~yARen~iPfLGIClGmQ~av  100 (258)
T d1s1ma1          55 LKGLDAILVPGGFGY---RGVEGMITTARFARENNIPYLGICLGMQVAL  100 (258)
T ss_dssp             TTTCSEEEECCCCSS---TTHHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             ccccccEEeecccCc---CCHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            457999999999985   3456778889999999999999999998765

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.013  Score=49.40  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhh
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La  131 (392)
                      .++|.|+||||+|.+   .-+-.+..++.+.+++.|..+||-|.+++.
T Consensus        56 ~~~dGIlvPGGFG~R---G~eGki~ai~yARen~iPfLGIClGmQ~av  100 (258)
T d1s1ma1          56 KGLDAILVPGGFGYR---GVEGMITTARFARENNIPYLGICLGMQVAL  100 (258)
T ss_dssp             TTCSEEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             cccccEEeecccCcC---CHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            479999999999854   345677888888999999999999998764

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.10  E-value=0.031  Score=46.94  Aligned_cols=46  Identities=28%  Similarity=0.362  Sum_probs=37.8

Q ss_pred             CCCcCEEEEcCCCChhhccCChHHHHHHHHHHHcCCcEEEEehHHHHHH
Q 016237          276 VSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILA  324 (392)
Q Consensus       276 ~~~~D~viipgg~~~~~~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La  324 (392)
                      ..++|.|+||||+|.+   .-+--+..++.+.+++.|..+||.|-++..
T Consensus        56 L~~~dGIlvPGGFG~r---G~eGki~ai~yARen~iPfLGIClGmQ~av  101 (250)
T d1vcoa1          56 FRDVSGILVPGGFGVR---GIEGKVRAAQYARERKIPYLGICLGLQIAV  101 (250)
T ss_dssp             TTTCSCEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             HhcCCeEEecCCCCcc---chHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence            3478999999999853   345666778888899999999999998665

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.50  E-value=0.041  Score=46.14  Aligned_cols=45  Identities=18%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             CCccEEEEcCCCCcccccCCHHHHHHHHHHHhCCCeEEEEchhhHHhh
Q 016237           84 SKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (392)
Q Consensus        84 ~~~D~iiipGG~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La  131 (392)
                      .++|.|+||||.|.+-   -+-.+.-++.+.+++.|..+||-|.++..
T Consensus        57 ~~~dGIlvPGGFG~rG---~eGki~ai~yARen~iPfLGIClGmQ~av  101 (250)
T d1vcoa1          57 RDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIAV  101 (250)
T ss_dssp             TTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             hcCCeEEecCCCCccc---hHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence            4789999999998543   24566678888889999999999998664

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.48  E-value=0.032  Score=46.58  Aligned_cols=49  Identities=10%  Similarity=0.164  Sum_probs=39.6

Q ss_pred             CccEEEEcCCCCccc--ccCCHHHHHHHHHHHhCCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  133 (392)
                      +.|+|++.||.-...  ......+.+.|++.+++|+++++...|+.++...
T Consensus        79 ~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~~  129 (229)
T d1fyea_          79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             hCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCcc
Confidence            679999999974322  3345678889999999999999999999988754

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.05  E-value=0.019  Score=48.03  Aligned_cols=49  Identities=12%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             CcCEEEEcCCCChhh--ccCChHHHHHHHHHHHcCCcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAPEY--LALNENVIALVKDFMEAKKPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~~~--~~~~~~l~~~l~~~~~~g~~i~aiC~G~~~La~a  326 (392)
                      +.|+|++.||.-...  ......+.+.|++.+++|+++++..+|+.++...
T Consensus        79 ~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~~  129 (229)
T d1fyea_          79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             hCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCcc
Confidence            679999999865322  3456778889999999999999999999888744

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.15  Score=43.83  Aligned_cols=49  Identities=20%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CcCEEEEcCCCCh---h-hccCChHHHHHHHHHHHcC--CcEEEEehHHHHHHHc
Q 016237          278 GYDALVVPGGRAP---E-YLALNENVIALVKDFMEAK--KPVASICHGQQILAAA  326 (392)
Q Consensus       278 ~~D~viipgg~~~---~-~~~~~~~l~~~l~~~~~~g--~~i~aiC~G~~~La~a  326 (392)
                      ..|.|++|||...   . +....+.+.++.....+.+  .||.+||.|-++|+.+
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~  113 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  113 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence            4699999999642   1 1222344455555554444  5999999999999765

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.17  Score=43.48  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             CccEEEEcCCCCccc----ccCCHHHHHHHHHHHh--CCCeEEEEchhhHHhhcC
Q 016237           85 KYDGLVIPGGRAPEY----LAMNDSVIDLVRKFSN--SGKTIASICHGQLILAAA  133 (392)
Q Consensus        85 ~~D~iiipGG~~~~~----~~~~~~l~~~l~~~~~--~~~~i~aic~G~~~La~a  133 (392)
                      ..|.|++|||.....    ....+.+.++......  +..||.+||.|.++|+.+
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~  113 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  113 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence            468999999963211    1112334444444444  346999999999999754