Citrus Sinensis ID: 016239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MSDHNPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHccHHHHHHHccccHHHHHHHccccHHHHHHHccccccccEEEEEEEccccccccEEEEEEcccccEEEcccccccccccEEEEcccEEEEEcccccEEccccccEEEcccccccccccEEEEEEccccccEEccccccccccEEEEEEEEEEEccEEcccccEEEEEEccccccEEccccccccccccccccEEEEEEEccEEEEEEEcccEEEEEEcccccEEEEccccccccccEEEEEEccEEEEEEEEccccccEEEEEEEEccccEEEEEEEccHHHHHHHccccccccEEEEEEEEEccEEEEEEccccccccEEEEEccccccccccEEEEccccccccccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccEEEEEEccccccccccccccccccccEEEccccccccccEEEEEcccEEEEEccccccccccccccccccccccccccccEEEEcccccccEEEEEEcEEEcccEEEEccEEEEEccccccccEEEEEEcccccccEEcccccHHHccccccccccEEEEccEEEEEEccccEEEEEcccccccccccccccccccccHEEEcccEEEEEEEEccccccEEEEEEEccccEEEEEcccccHHHHHHHHccccccccEEEEEEccccEEEEEcccccccEEEEEEEcccccccEEEEEEEcccccccHHHccEEEEEEccccHHHHcccc
Coil and Loop (DISEMBL)
msdhnpysafttlSTDITERIlsllpiptliRASSVCKSWrsiisapsfSALIAhntnasprpwfFLFGlhntssrnnqsfafdpasnswfhlppaqepragscfigangffftttprfgfsrilntswhltsplrfsrinplvgvfydhdrghcdlasgfacnlpkfiVVGGVRfigglvdiedrlaveiydphsdswelcpplpadfrsgyssQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVwsevqtlrppgvmfsFLIASPNMLVLAgmcnaprgpsfnlwkvdelsmefseiaimphdflyslvdteeddkfaslkcvglgnlIYVFNeeyhkkypacvceigtesdkcrcswrrlpqlpspvneFHKVISFCSTVSLHNIIQRE
Flexible Loop (DISEMBL)
msdhnpysaFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE
Low Complexity Region (SEG)
MSDHNPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGffftttPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKfivvggvrfigglvDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE
Disordered region (IsUnstruct)
********AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNT*******FAFD*ASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNII***
Disordered Region (DISOPRED)
*****PY***TTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVS*H******
Disordered Region (DISEMBL)
********AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE
Disordered Region (DISPRO)
*****PYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNII***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDHNPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q3EB08	383	F-box/kelch-repeat protei	yes	no	0.941	0.963	0.560	1e-112
Q9LDE3	394	F-box/kelch-repeat protei	no	no	0.875	0.870	0.275	4e-24
Q9M310	411	F-box/kelch-repeat protei	no	no	0.211	0.201	0.388	2e-09
Q9LFV5	448	F-box/kelch-repeat protei	no	no	0.729	0.638	0.230	2e-08
Q9SMZ3	457	F-box only protein 13 OS=	no	no	0.191	0.164	0.419	2e-07
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.433	0.456	0.267	9e-07
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.469	0.489	0.241	3e-06
Q9FZK1	467	F-box only protein 6 OS=A	no	no	0.681	0.571	0.202	2e-05
Q0V7S6	442	F-box/kelch-repeat protei	no	no	0.5	0.443	0.278	7e-05
Q9FZJ3	346	Putative F-box/kelch-repe	no	no	0.553	0.627	0.210	0.0006

>sp|Q3EB08|FBK69_ARATH F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/396 (56%), Positives = 272/396 (68%), Gaps = 27/396 (6%)

Query: 1   MSDHNPY---SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNT 57
           MSD+NP    S F  L+ D+TE IL  LPIP+L+R + V K WRS+I+    S   + + 
Sbjct: 1   MSDNNPEIESSTFNNLNIDVTESILYHLPIPSLVRFTLVSKQWRSLIT----SLPPSPSP 56

Query: 58  NASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP 117
           + S  PW FLFG+HNTSS +NQSFAFDP SN+W  L       +    +G+N F FTT P
Sbjct: 57  SPSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRL--PPSSSSSDHLVGSNRFLFTTAP 114

Query: 118 RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFI 177
           RF FS IL  +W  TSP+RF RINPL+ VF                N  K I+VGG   I
Sbjct: 115 RFSFSPILKPNWRFTSPVRFPRINPLLTVFTT------------LSNSSKLILVGGSSRI 162

Query: 178 GGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSV 237
           GGLVDIE+RLAV+IYDP  DSWELC PLPADFRSG   Q L+SALF+ RFYVF  YS  +
Sbjct: 163 GGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFI 222

Query: 238 SSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297
           SSF L  + WS+VQTL+PPG+ F++L +   MLVL GMC    G SFNLW ++E SMEFS
Sbjct: 223 SSFCLDSYTWSDVQTLKPPGLSFAYLNSCNGMLVLGGMC----GFSFNLWSIEEGSMEFS 278

Query: 298 EIAIMPHDFLYSLVDT-EEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKC 356
           EIA+MP D L+ LVD+ +EDDKF SLKC G GNL+YVFN++ HKK+PACVCEIG   +  
Sbjct: 279 EIAVMPEDLLFGLVDSDDEDDKFRSLKCAGSGNLVYVFNDDCHKKFPACVCEIGGGENGI 338

Query: 357 RCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE 392
            CSWRR+P LPSPVN+FHKV+SFCSTVS+ ++   E
Sbjct: 339 -CSWRRVPCLPSPVNKFHKVVSFCSTVSITDVFHPE 373

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDE3|FBK9_ARATH F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 165/396 (41%), Gaps = 53/396 (13%)

Query: 11  TTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGL 70
           +++  DI E ILS LP+  L  A  V KSW   +    F +L    T     PW F++  
Sbjct: 18  SSIDGDILESILSYLPLLDLDSACQVSKSWNRAV----FYSLRRLKT----MPWLFVYNQ 69

Query: 71  HNTS--SRNNQSFAFDPASNSWFHLPPAQEP--RAGSCFIGANGFFFTTTP-RFGFSR-I 124
            N+   +    + A+DP S +W  L  A  P           +   +  +P RF FS   
Sbjct: 70  RNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSFSTDA 129

Query: 125 LNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIE 184
            + +W   +P R  RI+P+V V      G   + +G  C+                   E
Sbjct: 130 FHLTWQHVAPPRVWRIDPIVAVV-----GRSLIIAGGVCDFE-----------------E 167

Query: 185 DRLAVEIYDPHS--DSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDL 242
           DR AVE++D  S   +WE C  +P       SS +LS A+   + YV    S    SF+ 
Sbjct: 168 DRFAVELFDIESGDGAWERCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNP 227

Query: 243 KKHVWSEVQTLRPPGV-MFSFLIA-SPNMLVLAGMCNAPRGPS-FNLWKV---DELSMEF 296
               W+++  L P    ++S  I  S N L++AG+      P+   LW+V   DE  ++F
Sbjct: 228 VTRSWTKLLDLCPGECSLYSRSIGFSVNRLIMAGIIGDEYNPTGIELWEVIDSDESHLKF 287

Query: 297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN-EEYHKKYPACVCEIGTESDK 355
             I  MP  +L  L     D    S+    +G+++YV    E   +  A   E G     
Sbjct: 288 ESIGSMPETYLEKLRGINSDWPLTSIVLNAVGDMVYVHGAAENGGEIVAAEIEGGK---- 343

Query: 356 CRCSWRRLPQLPSPVNEFH---KVISFCSTVSLHNI 388
             C WR LP   +   + H   +VI  CS V   ++
Sbjct: 344 -LCKWRTLPNADATWKKSHAAERVIVACSNVGFSDL 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)

Query: 7   YSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFF 66
           +S  + L  D+ ERILS LPI ++ RA +VCK W  I+S+  F    ++N+  S RPW+F
Sbjct: 37  FSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNS-VSQRPWYF 95

Query: 67  LFGLHNTSSRNNQSFAFDPASNSW--FHLP 94
           +F    T++ +   +A+DP    W  F LP
Sbjct: 96  MF----TTTDDPSGYAYDPIIRKWYSFDLP 121

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 121/334 (36%), Gaps = 48/334 (14%)

Query: 10  FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFG 69
           +  L  D+   IL+ +P   + R  SVCK W  I+   SF  L  H+  +S  P    F 
Sbjct: 104 WAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSF--LKFHSNVSSHGPCLLTF- 160

Query: 70  LHNTSSRNNQSFAFDPASNSWFH-----LPPAQEPRAGS-----CFIGANGFFFTTTPRF 119
               S +  Q   F     +W+      LPP      GS     CF G +G  F T    
Sbjct: 161 -WKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTL--- 216

Query: 120 GFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG 179
                L  SW     + +++   L+ V    D+               F V+      G 
Sbjct: 217 -VCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKS--------------FKVIATSDIYG- 260

Query: 180 LVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSS 239
               +  L  E+YD  +D W L   +PA         Y  S     R Y+  +    +  
Sbjct: 261 ----DKSLPTEVYDSKTDKWSLHQIMPAVNLCSSKMAYCDS-----RLYLETLSPLGLMM 311

Query: 240 FDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNA-PRGPSFNLWKVDELSMEFS 297
           + L    W  +    P  ++  +L+A +   L L G         S  +W++D   + + 
Sbjct: 312 YRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVSWV 371

Query: 298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLI 331
           EI+ MP  +  +L+    +      +C G  NLI
Sbjct: 372 EISRMPPKYFRALLRLSAE----RFECFGQDNLI 401

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 13  LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN 72
           L+ D+ ER+LS LP     R SSVCK W+S  ++ SF   +A +   +  PWFF+  + N
Sbjct: 70  LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFK--LACSQIPTRDPWFFM--IDN 125

Query: 73  TSSRNNQSFAFDPASNSWFHL 93
            S  N+ SF FD   NSW +L
Sbjct: 126 DS--NSSSFVFDSTENSWKNL 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 80/213 (37%), Gaps = 43/213 (20%)

Query: 10  FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFG 69
            + L  DI E  L  LP P      SV  SW   I+ P F  L +  + +   P+ F+F 
Sbjct: 29  ISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRF--LFSKQSLSISSPYLFVFA 86

Query: 70  LHNTSSRNNQSFAFDPASNSWFHLPP----------------AQEPRAGSCFIGANGFFF 113
            + +++R  Q  + D AS  WF LPP                A  PR G  F+   G   
Sbjct: 87  FNKSTAR-IQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGGGDVN 145

Query: 114 TTTPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGG 173
            +   +     L   W   SP+   R   + G                     K + VGG
Sbjct: 146 RSAVVY---TALTNRWSCISPMMSPRTYFVSGNVNG-----------------KIMAVGG 185

Query: 174 VRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP 206
              +GG  + E    VE YDP +D+W +   LP
Sbjct: 186 S--VGG--NGEATTEVESYDPDNDTWTVVKKLP 214

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 85/236 (36%), Gaps = 52/236 (22%)

Query: 13  LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN 72
           L  D+ ++ L+L+P        SVCK WR ++ +  F  +           W ++  + N
Sbjct: 43  LPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEF--ITVRRLAGMLEEWLYVLTM-N 99

Query: 73  TSSRNNQSFAFDPASNSWFHLPPAQEPR----------------AGSCFIGANGFFFTTT 116
              ++N+    D        LPP   P                 AG C I  NG    + 
Sbjct: 100 AGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMI--NGSLVASA 157

Query: 117 PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRF 176
             + +   LN SW   + L  +R        YD           FAC      V G V  
Sbjct: 158 DVYQYDTCLN-SWSRLADLEVAR--------YD-----------FACAE----VNGHVYV 193

Query: 177 IGG-LVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG 231
           +GG  VD E   + E+YDP + +W     L       ++S       F G+ YV G
Sbjct: 194 VGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASA------FNGKLYVMG 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 24/291 (8%)

Query: 16  DITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSS 75
           D+ E ++S LP+ T  +  +VC+ W ++I + SFS            PWF+     N   
Sbjct: 123 DLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTI--PWFYTITHENV-- 178

Query: 76  RNNQSFAFDPASNSWFH-LPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHLTSP 134
             N    +DP+   W H + PA   ++    + + G          F  I + ++++++P
Sbjct: 179 --NSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVC------FLDIGHRNFYVSNP 230

Query: 135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDP 194
           L  S        F    R    +A G   N         V ++G   +       E+YD 
Sbjct: 231 LTKSFRELPARSFKVWSR----VAVGMTLNGNSTSHGYKVLWVGCEGE------YEVYDS 280

Query: 195 HSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDLKKHVWSEVQTL 253
            S+ W     +P++ +      + S  +      Y        + S+D+    W +    
Sbjct: 281 LSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIP 340

Query: 254 RPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPH 304
            PP +    L A    L+L G+          +W++ ++++ + E+  MP+
Sbjct: 341 GPPDLSDHTLAACGERLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPN 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q0V7S6|FK125_ARATH F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 16/212 (7%)

Query: 13  LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN 72
           LS D+   ILS +P P + R  S CKSW + +S+ +  +L     N++      L  +  
Sbjct: 42  LSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNNLSHLLCIFP 101

Query: 73  TSSRNNQSFAFDPASNSWFHLP--PAQEPRAGSC-FIG-ANGFFFTTTPRFGFSRILNTS 128
                +  F FDP + SW  LP  P      G C F+  A G +       G S     S
Sbjct: 102 QDPSISPPFLFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPYVYV---LGGSAFDTRS 158

Query: 129 WHLTSPLRFSRI--NPLVGVFYDHDRGHCDLASGFAC-----NLPKFIVVGGVRFIGGLV 181
           + L  PL  S +     V   ++           FAC     +  + IV GG        
Sbjct: 159 YPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGSRHTLFG 218

Query: 182 DIEDRL-AVEIYDPHSDSWELCPPLPADFRSG 212
               R+ +VE+YD   D W +   LP  FR+G
Sbjct: 219 AAGSRMSSVEMYDVEKDEWRVMNELPR-FRAG 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZJ3|FBK16_ARATH Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=2

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 93/252 (36%), Gaps = 35/252 (13%)

Query: 13  LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN 72
           L+ D+ E  +S +P  +    S VC+ WRS + +  F+A+            F    + +
Sbjct: 14  LTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEE---FLCVLMES 70

Query: 73  TSSRNNQSFAFDPASNSWFHLPPAQEP-RAG---SCFIGANGFFFTTTPRFGFSRILNTS 128
              R+     FD + N    +PP   P + G   +   G    FF        S I +T+
Sbjct: 71  ECGRDVYWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGINSTT 130

Query: 129 WHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPK----FIVVGGVRFI--GGLVD 182
              ++ +            Y+ D  +         N+P+    F  V G+ ++  G   D
Sbjct: 131 VSASADV------------YEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTD 178

Query: 183 IEDRLAVEIYDPHSDSWEL--CPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSF 240
                  E+Y+P ++ W L  CP  P      ++        F  + Y  G  S  +  +
Sbjct: 179 TYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFA--------FSSKLYAVGNGSRFIDIY 230

Query: 241 DLKKHVWSEVQT 252
           D K   W E+ +
Sbjct: 231 DPKTQTWEELNS 242

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
255560199	388	conserved hypothetical protein [Ricinus	0.933	0.943	0.692	1e-144
225464221	386	PREDICTED: F-box/kelch-repeat protein At	0.931	0.945	0.653	1e-130
147779383	386	hypothetical protein VITISV_001761 [Viti	0.931	0.945	0.651	1e-129
356567890	389	PREDICTED: F-box/kelch-repeat protein At	0.938	0.946	0.647	1e-122
356524531	388	PREDICTED: F-box/kelch-repeat protein At	0.933	0.943	0.640	1e-121
357505809	380	F-box/kelch-repeat protein [Medicago tru	0.926	0.955	0.610	1e-119
357505381	380	F-box/kelch-repeat protein [Medicago tru	0.931	0.960	0.605	1e-119
297744301	388	unnamed protein product [Vitis vinifera]	0.821	0.829	0.654	1e-112
297831348	379	F-box family protein [Arabidopsis lyrata	0.941	0.973	0.565	1e-112
15230186	383	F-box/kelch-repeat protein [Arabidopsis	0.941	0.963	0.560	1e-110

>gi|255560199|ref|XP_002521117.1| conserved hypothetical protein [Ricinus communis] gi|223539686|gb|EEF41268.1| conserved hypothetical protein [Ricinus communis]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/381 (69%), Positives = 303/381 (79%), Gaps = 15/381 (3%)

Query: 10  FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFG 69
           FT+LS+D+ E ILS LPIP+L+RASSVCK W S+I+AP+F +   H+     RPWFFL G
Sbjct: 5   FTSLSSDLIELILSSLPIPSLLRASSVCKLWHSLITAPTFPSHPPHH-----RPWFFLHG 59

Query: 70  LHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNTSW 129
           LHNTSS+NNQSFAFDP+SNSWF LP    P     FIG+NGF F+T   F FS +L   W
Sbjct: 60  LHNTSSKNNQSFAFDPSSNSWFRLP--YFPFPSRDFIGSNGFLFSTAASFSFSPVLKPRW 117

Query: 130 HLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNL--PKFIVVGGVRFIGGLVDIEDRL 187
             TSPL FSRINPLVGVF   +R    LAS    N+  P FIVVGGVRFIG LVDIEDRL
Sbjct: 118 KSTSPLSFSRINPLVGVFLKDNR----LASSSCYNISKPHFIVVGGVRFIGNLVDIEDRL 173

Query: 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVW 247
           AVEIYDP +DSW+LCPPLPADFRSG SSQ LSSAL + RFYVFGIY+F VS FDL KHVW
Sbjct: 174 AVEIYDPGNDSWDLCPPLPADFRSGNSSQTLSSALLKSRFYVFGIYTFFVSFFDLDKHVW 233

Query: 248 SEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFL 307
           S+VQTLRPPGV+F+FLIA   MLVLAGMCN P+GPSFNLWK+ E +MEFSEIAIMP D L
Sbjct: 234 SQVQTLRPPGVLFAFLIACQEMLVLAGMCNGPQGPSFNLWKIGEKNMEFSEIAIMPQDLL 293

Query: 308 YSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLP 367
           Y LVD+EEDDKFASLKCVG+GNL+YVFNEEYH  YPAC+C+I +E+ K  CSW+R+PQLP
Sbjct: 294 YGLVDSEEDDKFASLKCVGMGNLVYVFNEEYHCMYPACICQIFSETGK--CSWKRVPQLP 351

Query: 368 SPVNEFHKVISFCSTVSLHNI 388
           SPVN+FHKVISFCS V L ++
Sbjct: 352 SPVNKFHKVISFCSMVLLQHV 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464221|ref|XP_002265647.1| PREDICTED: F-box/kelch-repeat protein At3g24760-like [Vitis vinifera]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/387 (65%), Positives = 288/387 (74%), Gaps = 22/387 (5%)

Query: 10  FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFG 69
           +T L +D+T  ILS LPI ++IRAS+VCK WRSIIS P FS L++  T+A   PWFFL G
Sbjct: 8   WTLLGSDLTALILSHLPIASIIRASAVCKLWRSIISTPFFSNLLS--TSAHHHPWFFLLG 65

Query: 70  LHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS----CFIGANGFFFTTTP--RFGFSR 123
             N   +NNQSFAFDP SN W  LPP+             IG+NG   +TT   RF FS 
Sbjct: 66  QSNILLKNNQSFAFDPDSNLWLPLPPSFLFPPPHYHHHSLIGSNGLVLSTTSSSRFLFSP 125

Query: 124 ILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183
           IL+ SWHLTSPLRF R NPLVGVF D         SG      KFIVVGGVRFIGGLVDI
Sbjct: 126 ILSKSWHLTSPLRFPRSNPLVGVFSD--------GSGST----KFIVVGGVRFIGGLVDI 173

Query: 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLK 243
           EDRL VEIY P+ D+WELCPPLP DFRSG SSQ+L SAL++G+FYVFGIYS  +S+F L 
Sbjct: 174 EDRLDVEIYTPNLDAWELCPPLPVDFRSGNSSQWLCSALYKGKFYVFGIYSCFISAFHLT 233

Query: 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303
           KH W+EVQTLRPPGV FSFLIA  + LVLAG+CN+PRGPS NLW+VDE +MEFSEIAIMP
Sbjct: 234 KHFWTEVQTLRPPGVSFSFLIACRDQLVLAGLCNSPRGPSVNLWRVDEETMEFSEIAIMP 293

Query: 304 HDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL 363
            D LY L D   DDKFASLKCVGLGNLIYVFNEEYHK YPACVCEI + + K  CSWRR+
Sbjct: 294 QDLLYKLFDGYGDDKFASLKCVGLGNLIYVFNEEYHKSYPACVCEINSGTGK--CSWRRI 351

Query: 364 PQLPSPVNEFHKVISFCSTVSLHNIIQ 390
           P LP PVN+FHKVISFCST+ L NI++
Sbjct: 352 PHLPKPVNQFHKVISFCSTIPLGNILR 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779383|emb|CAN65567.1| hypothetical protein VITISV_001761 [Vitis vinifera]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/387 (65%), Positives = 286/387 (73%), Gaps = 22/387 (5%)

Query: 10  FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFG 69
           +T L +D+T  ILS LPI ++IRAS+VCK WRSIIS P FS L++  T+A   PWFFL G
Sbjct: 8   WTLLGSDLTALILSHLPIASIIRASAVCKLWRSIISTPFFSNLLS--TSAHHHPWFFLLG 65

Query: 70  LHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS----CFIGANGFFFTTTP--RFGFSR 123
             N   +NNQSFAFDP SN W  LPP              IG+NG   +TT   RF FS 
Sbjct: 66  QSNILLKNNQSFAFDPDSNLWLXLPPXLXFPPPHYHHHSLIGSNGLVLSTTSSSRFLFSP 125

Query: 124 ILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183
           IL+ SWHLTSPLRF R NPLVGVF D         SG      KFIVVGGVRFIGGLVDI
Sbjct: 126 ILSKSWHLTSPLRFPRSNPLVGVFSD--------GSGST----KFIVVGGVRFIGGLVDI 173

Query: 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLK 243
           EDRL VEIY P+ D+WELCPPLP DFRSG SSQ+L SAL++G+FYVFGIYS  +S+F L 
Sbjct: 174 EDRLDVEIYTPNLDAWELCPPLPVDFRSGNSSQWLCSALYKGKFYVFGIYSCFISAFHLT 233

Query: 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303
           KH W+EVQT RPPGV FSFLIA  + LVLAG+CN+PRGPS NLW+VDE +MEFSEIAIMP
Sbjct: 234 KHFWTEVQTXRPPGVSFSFLIACRDQLVLAGLCNSPRGPSVNLWRVDEETMEFSEIAIMP 293

Query: 304 HDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL 363
            D LY L D   DDKFASLKCVGLGNLIYVFNEEYHK YPACVCEI + + K  CSWRR+
Sbjct: 294 QDLLYKLFDGYGDDKFASLKCVGLGNLIYVFNEEYHKSYPACVCEINSGTGK--CSWRRI 351

Query: 364 PQLPSPVNEFHKVISFCSTVSLHNIIQ 390
           P LP PVN+FHKVISFCST+ L NI++
Sbjct: 352 PHLPKPVNQFHKVISFCSTIPLGNILR 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567890|ref|XP_003552148.1| PREDICTED: F-box/kelch-repeat protein At3g24760-like [Glycine max]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/391 (64%), Positives = 291/391 (74%), Gaps = 23/391 (5%)

Query: 8   SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFL 67
           +  T LSTD+ E ILSLLPIP LIRAS+VCK W SIIS+ SFS L    +N   +PWFFL
Sbjct: 3   TEITNLSTDLIELILSLLPIPILIRASTVCKLWHSIISSSSFSTL----SNHLNQPWFFL 58

Query: 68  FGLHNTSSRNNQSFAFDPASNSWFHLPP-------AQEPRAGSCFIGANGFFFTTTPRFG 120
            G+HN SS+NNQSFAFDPASN+WF LP          + ++ + FIG N FFF T P F 
Sbjct: 59  HGIHNISSKNNQSFAFDPASNTWFLLPTPQHQHQHQHQYQSNTSFIGTNSFFFITAPNFL 118

Query: 121 FSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGL 180
           ++ IL+ SWH T PL F RINPL+GVF+D        A     + PKFIVVGGV+FIG L
Sbjct: 119 YTPILHPSWHPTPPLHFPRINPLLGVFHD--------AKDHTFSHPKFIVVGGVKFIGNL 170

Query: 181 VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSF 240
           VDIEDRL VEIYDP   SW+L PPLP DFRSG SS  LSSALFR +FYVFGIYS  VSSF
Sbjct: 171 VDIEDRLDVEIYDPLLGSWDLGPPLPPDFRSGNSSSSLSSALFREKFYVFGIYSCFVSSF 230

Query: 241 DLKKHVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRG-PSFNLWKVDELSMEFSE 298
           DL K VWSEV TLRP  G++FSFL+A   MLVLAG+CN P G  SF LWKVDE +M FS+
Sbjct: 231 DLHKRVWSEVHTLRPHHGIVFSFLVACKEMLVLAGVCNFPHGSSSFVLWKVDERTMGFSQ 290

Query: 299 IAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRC 358
           IA+MPHD L SL D +EDDKFASLKCVGLG+LIYVFNE+YH+ YPACVCEI  ES   RC
Sbjct: 291 IAVMPHDLLCSLFDGDEDDKFASLKCVGLGDLIYVFNEDYHRMYPACVCEIDGESG--RC 348

Query: 359 SWRRLPQLPSPVNEFHKVISFCSTVSLHNII 389
            WRR+PQLPS +N FHKV+SFCSTVSLH+I+
Sbjct: 349 VWRRVPQLPSLMNRFHKVVSFCSTVSLHSIL 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524531|ref|XP_003530882.1| PREDICTED: F-box/kelch-repeat protein At3g24760-like [Glycine max]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/392 (64%), Positives = 293/392 (74%), Gaps = 26/392 (6%)

Query: 8   SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFL 67
           +  T LSTD+ E ILSLLPIPTLIRAS+VCK W SIIS+ SFS L    +N   +PWFFL
Sbjct: 3   TDITNLSTDLIELILSLLPIPTLIRASTVCKLWHSIISSSSFSTL----SNHLKQPWFFL 58

Query: 68  FGLHNTSSRNNQSFAFDPASNSWFHLPPAQ-----EPRAGSCFIGANGFFFTTTPRFGFS 122
            G+HN SS+NNQSFAFDP+SN+WF LP  Q     + ++ + FIG + FFF T P F ++
Sbjct: 59  HGIHNISSKNNQSFAFDPSSNTWFLLPTPQHHHQSQYQSNTSFIGTSSFFFITAPNFLYT 118

Query: 123 RILNTSWHLTSPLRFSRINPLVGVFYD---HDRGHCDLASGFACNLPKFIVVGGVRFIGG 179
            IL+ SWH T PL F RINPL+GVF+D    + GH           PKFIVVGGV+FIG 
Sbjct: 119 PILHPSWHPTPPLHFPRINPLLGVFHDAKDQNFGHH----------PKFIVVGGVKFIGN 168

Query: 180 LVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSS 239
           LVDIEDRL VEIYDP   SWEL PPLP DFRSG SS  LSSALFRG+FYVFGIYS  VSS
Sbjct: 169 LVDIEDRLDVEIYDPLVGSWELGPPLPPDFRSGNSSSSLSSALFRGKFYVFGIYSCFVSS 228

Query: 240 FDLKKHVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRG-PSFNLWKVDELSMEFS 297
           FDL K VWS+V TLRP   V+FSFL+A   MLVLAG+CN P G  SF LWKVDE +M F+
Sbjct: 229 FDLHKRVWSDVHTLRPRHEVVFSFLVACREMLVLAGVCNFPHGSSSFVLWKVDERTMWFT 288

Query: 298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCR 357
           +I +MPHD L SL D +EDDKFASLKCVGLG+LIYVFNE+YH+ YPACVCEI  ES   R
Sbjct: 289 QIDVMPHDLLCSLFDGDEDDKFASLKCVGLGDLIYVFNEDYHRMYPACVCEIDGESG--R 346

Query: 358 CSWRRLPQLPSPVNEFHKVISFCSTVSLHNII 389
           C WRR+PQLPS ++ FHKV+SFCSTVSL++I+
Sbjct: 347 CVWRRVPQLPSLMSRFHKVVSFCSTVSLYSIL 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505809|ref|XP_003623193.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355498208|gb|AES79411.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/390 (61%), Positives = 285/390 (73%), Gaps = 27/390 (6%)

Query: 8   SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFL 67
           +  T LS D+ E ILS LPIP+LI+AS+VCK W +I+S+    +  + N N   +PWFFL
Sbjct: 2   TEITNLSLDLIESILSHLPIPSLIQASTVCKLWYTILSS----SSFSSNHNQKHKPWFFL 57

Query: 68  FGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPR---AGSCFIGANGFFFTTTPRFGFSRI 124
            G+HN SS+NNQSFAFDP+SNSWF LP  Q+P      + FIG + +FF T P F ++ I
Sbjct: 58  HGIHNISSKNNQSFAFDPSSNSWFLLPTPQQPLHYPNNTSFIGTSSYFFITAPNFVYTSI 117

Query: 125 LN-TSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183
           L   +W  T PL F RINPL+GVF D          G +    KFIVVGGVRFIG LVDI
Sbjct: 118 LRPLAWSSTPPLHFPRINPLLGVFND----------GLSL---KFIVVGGVRFIGNLVDI 164

Query: 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLK 243
           EDRL VEIYDP   SW+L PPLP DFRSG SS  LSSALF+G+F+VFGIYS  VSSFDLK
Sbjct: 165 EDRLDVEIYDPLLGSWDLAPPLPVDFRSGNSSSSLSSALFKGKFFVFGIYSCFVSSFDLK 224

Query: 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303
             VWS+V+ +RP GV+FSFLIA    LVLAG+C++P G SFNLW+VDE SME  EI +MP
Sbjct: 225 LRVWSDVRIVRPSGVVFSFLIACRERLVLAGVCDSPSGSSFNLWEVDEKSMEICEIGVMP 284

Query: 304 HDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI----GTESDKCRCS 359
           HD L SL D +EDD+FASLKCVGLG+LIYVFNE+YH+ YPACVCEI    G E+ KC   
Sbjct: 285 HDLLSSLFDGDEDDRFASLKCVGLGDLIYVFNEDYHRMYPACVCEIRGRGGGENGKCY-- 342

Query: 360 WRRLPQLPSPVNEFHKVISFCSTVSLHNII 389
           WRR+PQLPS +N FHKV+SFCSTVSLH+I+
Sbjct: 343 WRRVPQLPSLMNRFHKVVSFCSTVSLHSIL 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505381|ref|XP_003622979.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355497994|gb|AES79197.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/388 (60%), Positives = 283/388 (72%), Gaps = 23/388 (5%)

Query: 8   SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFL 67
           +  T LS D+ E ILS LPIP+LI+AS+VCK W +I+S+    +  + N N   +PWFFL
Sbjct: 2   TEITNLSLDLIESILSHLPIPSLIQASTVCKLWYTILSS----SSFSSNHNQKHKPWFFL 57

Query: 68  FGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPR---AGSCFIGANGFFFTTTPRFGFSRI 124
            G+HN SS+NNQSFAFDP+SNSWF LP  Q+P      + FIG + +FF T P F ++ I
Sbjct: 58  HGIHNISSKNNQSFAFDPSSNSWFLLPTPQQPLHYPNNTSFIGTSSYFFITAPNFVYTSI 117

Query: 125 LN-TSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183
           L   +W  T PL F RINPL+GVF D          G +    KFIVVGGVRFIG LVDI
Sbjct: 118 LRPLAWSSTPPLHFPRINPLLGVFND----------GLSL---KFIVVGGVRFIGNLVDI 164

Query: 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLK 243
           EDRL VEIYDP   SW+L PPLP DFRSG SS  LSSALF+G+F+VFGIYS  VSSFDLK
Sbjct: 165 EDRLDVEIYDPLLGSWDLAPPLPVDFRSGNSSSSLSSALFKGKFFVFGIYSCFVSSFDLK 224

Query: 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303
             VWS+V+ +RP GV+FSFLIA    LVLAG+CN+P G SFNLW+VDE SME  EI +MP
Sbjct: 225 LRVWSDVRIVRPSGVVFSFLIACRERLVLAGVCNSPSGSSFNLWEVDEKSMEICEIGVMP 284

Query: 304 HDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTE--SDKCRCSWR 361
           HD L SL D +EDD+FASLKCVGLG+LIYVFNE+YH+ YPACVCEI +    +  +C WR
Sbjct: 285 HDLLSSLFDGDEDDRFASLKCVGLGDLIYVFNEDYHRMYPACVCEIRSRGGGENSKCYWR 344

Query: 362 RLPQLPSPVNEFHKVISFCSTVSLHNII 389
           R+PQLPS +N FHKV+SFCSTVSL +I+
Sbjct: 345 RVPQLPSLMNRFHKVVSFCSTVSLDSIL 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744301|emb|CBI37271.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/342 (65%), Positives = 252/342 (73%), Gaps = 20/342 (5%)

Query: 10  FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFG 69
           +T L +D+T  ILS LPI ++IRAS+VCK WRSIIS P FS L++  T+A   PWFFL G
Sbjct: 32  WTLLGSDLTALILSHLPIASIIRASAVCKLWRSIISTPFFSNLLS--TSAHHHPWFFLLG 89

Query: 70  LHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS----CFIGANGFFFTTTP--RFGFSR 123
             N   +NNQSFAFDP SN W  LPP+             IG+NG   +TT   RF FS 
Sbjct: 90  QSNILLKNNQSFAFDPDSNLWLPLPPSFLFPPPHYHHHSLIGSNGLVLSTTSSSRFLFSP 149

Query: 124 ILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI 183
           IL+ SWHLTSPLRF R NPLVGVF D         SG      KFIVVGGVRFIGGLVDI
Sbjct: 150 ILSKSWHLTSPLRFPRSNPLVGVFSD--------GSGST----KFIVVGGVRFIGGLVDI 197

Query: 184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLK 243
           EDRL VEIY P+ D+WELCPPLP DFRSG SSQ+L SAL++G+FYVFGIYS  +S+F L 
Sbjct: 198 EDRLDVEIYTPNLDAWELCPPLPVDFRSGNSSQWLCSALYKGKFYVFGIYSCFISAFHLT 257

Query: 244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP 303
           KH W+EVQTLRPPGV FSFLIA  + LVLAG+CN+PRGPS NLW+VDE +MEFSEIAIMP
Sbjct: 258 KHFWTEVQTLRPPGVSFSFLIACRDQLVLAGLCNSPRGPSVNLWRVDEETMEFSEIAIMP 317

Query: 304 HDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPAC 345
            D LY L D   DDKFASLKCVGLGNLIYVFNEEYHK YPAC
Sbjct: 318 QDLLYKLFDGYGDDKFASLKCVGLGNLIYVFNEEYHKSYPAC 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831348|ref|XP_002883556.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297329396|gb|EFH59815.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/396 (56%), Positives = 275/396 (69%), Gaps = 27/396 (6%)

Query: 1   MSDHNPY---SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNT 57
           MSD+NP    S F TL+ D+TE ILS LPIP+L+R + V K WRSII+    S   + + 
Sbjct: 1   MSDNNPEIESSTFNTLNHDVTESILSHLPIPSLVRFTLVSKQWRSIIT----SLPPSPSP 56

Query: 58  NASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP 117
           ++S  PW FLFG+HNTSS +NQSFAFDP SN+W  L       +    +G+N F FTT P
Sbjct: 57  SSSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRL--PPSSSSSDHLVGSNRFLFTTAP 114

Query: 118 RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFI 177
           RF FS IL  +W  TSP+ F RINPL+ VF                N  K I+VGG   I
Sbjct: 115 RFSFSPILKPNWRFTSPVLFPRINPLLSVFTT------------LSNSSKLILVGGSSRI 162

Query: 178 GGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSV 237
           GGLVDIE+RLAV++YDP  DSWELC PLPADFRSG   Q L+SALF+ RFYVF  YS+ +
Sbjct: 163 GGLVDIEERLAVQVYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSYFI 222

Query: 238 SSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297
           SSF L  + WS+VQTL+PPG+ F+FL +   MLVL GMC    G SFNLW ++E SMEFS
Sbjct: 223 SSFCLDSYTWSDVQTLKPPGLSFAFLNSCNGMLVLGGMC----GFSFNLWSIEEGSMEFS 278

Query: 298 EIAIMPHDFLYSLVDTE-EDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKC 356
           EIA+MP   L+ LVD E E+DKF SLKCVG GNL+YVFN++ HKK+PACVCEIG   +  
Sbjct: 279 EIAVMPEGLLFGLVDNEDEEDKFRSLKCVGSGNLVYVFNDDCHKKFPACVCEIGG-GENG 337

Query: 357 RCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE 392
           +CSWRR+P LPSPVN+FHKV+SFCSTVS+ ++   E
Sbjct: 338 KCSWRRVPCLPSPVNKFHKVVSFCSTVSISDVFHPE 373

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230186|ref|NP_189120.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|122214862|sp|Q3EB08.1|FBK69_ARATH RecName: Full=F-box/kelch-repeat protein At3g24760 gi|332643423|gb|AEE76944.1| F-box/kelch-repeat protein [Arabidopsis thaliana]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/396 (56%), Positives = 272/396 (68%), Gaps = 27/396 (6%)

Query: 1   MSDHNPY---SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNT 57
           MSD+NP    S F  L+ D+TE IL  LPIP+L+R + V K WRS+I+    S   + + 
Sbjct: 1   MSDNNPEIESSTFNNLNIDVTESILYHLPIPSLVRFTLVSKQWRSLIT----SLPPSPSP 56

Query: 58  NASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP 117
           + S  PW FLFG+HNTSS +NQSFAFDP SN+W  L       +    +G+N F FTT P
Sbjct: 57  SPSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRL--PPSSSSSDHLVGSNRFLFTTAP 114

Query: 118 RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFI 177
           RF FS IL  +W  TSP+RF RINPL+ VF                N  K I+VGG   I
Sbjct: 115 RFSFSPILKPNWRFTSPVRFPRINPLLTVFTT------------LSNSSKLILVGGSSRI 162

Query: 178 GGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSV 237
           GGLVDIE+RLAV+IYDP  DSWELC PLPADFRSG   Q L+SALF+ RFYVF  YS  +
Sbjct: 163 GGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFI 222

Query: 238 SSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS 297
           SSF L  + WS+VQTL+PPG+ F++L +   MLVL GMC    G SFNLW ++E SMEFS
Sbjct: 223 SSFCLDSYTWSDVQTLKPPGLSFAYLNSCNGMLVLGGMC----GFSFNLWSIEEGSMEFS 278

Query: 298 EIAIMPHDFLYSLVDT-EEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKC 356
           EIA+MP D L+ LVD+ +EDDKF SLKC G GNL+YVFN++ HKK+PACVCEIG   +  
Sbjct: 279 EIAVMPEDLLFGLVDSDDEDDKFRSLKCAGSGNLVYVFNDDCHKKFPACVCEIGGGENGI 338

Query: 357 RCSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE 392
            CSWRR+P LPSPVN+FHKV+SFCSTVS+ ++   E
Sbjct: 339 -CSWRRVPCLPSPVNKFHKVVSFCSTVSITDVFHPE 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2087323	383	AT3G24760 "AT3G24760" [Arabido	0.801	0.819	0.558	3.4e-93
TAIR|locus:2028090	394	AT1G23390 "AT1G23390" [Arabido	0.512	0.510	0.296	1.5e-21
TAIR|locus:2125889	457	AT4G33160 "AT4G33160" [Arabido	0.191	0.164	0.419	1e-11
TAIR|locus:2082797	411	HWS "HAWAIIAN SKIRT" [Arabidop	0.211	0.201	0.388	1.2e-09
TAIR|locus:2143256	448	AT5G15710 "AT5G15710" [Arabido	0.346	0.303	0.238	3.8e-07
TAIR|locus:2015974	467	LCR "AT1G27340" [Arabidopsis t	0.191	0.160	0.292	8.3e-07
TAIR|locus:2162286	563	AT5G42350 "AT5G42350" [Arabido	0.216	0.150	0.275	2.2e-06
TAIR|locus:2162301	563	AT5G42360 "AT5G42360" [Arabido	0.216	0.150	0.275	2.2e-06
UNIPROTKB|F1N8Q0	569	KLHL14 "Kelch-like protein 14"	0.176	0.121	0.303	1.6e-05
UNIPROTKB|Q5F3N5	622	KLHL14 "Kelch-like protein 14"	0.176	0.110	0.303	2.2e-05

TAIR|locus:2087323 AT3G24760 "AT3G24760" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 187/335 (55%), Positives = 228/335 (68%)

Query:    59 ASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGXXXXXXPR 118
             +SP PW FLFG+HNTSS +NQSFAFDP SN+W  LPP+    +    +G+N       PR
Sbjct:    59 SSP-PWLFLFGIHNTSSFHNQSFAFDPLSNTWLRLPPSSS--SSDHLVGSNRFLFTTAPR 115

Query:   119 FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKXXXXXXXXXXX 178
             F FS IL  +W  TSP+RF RINPL+ VF         L+     N  K           
Sbjct:   116 FSFSPILKPNWRFTSPVRFPRINPLLTVF-------TTLS-----NSSKLILVGGSSRIG 163

Query:   179 XXXDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVS 238
                DIE+RLAV+IYDP  DSWELC PLPADFRSG   Q L+SALF+ RFYVF  YS  +S
Sbjct:   164 GLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFIS 223

Query:   239 SFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE 298
             SF L  + WS+VQTL+PPG+ F++L +   MLVL GMC    G SFNLW ++E SMEFSE
Sbjct:   224 SFCLDSYTWSDVQTLKPPGLSFAYLNSCNGMLVLGGMC----GFSFNLWSIEEGSMEFSE 279

Query:   299 IAIMPHDFLYSLVDTE-EDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCR 357
             IA+MP D L+ LVD++ EDDKF SLKC G GNL+YVFN++ HKK+PACVCEIG   +   
Sbjct:   280 IAVMPEDLLFGLVDSDDEDDKFRSLKCAGSGNLVYVFNDDCHKKFPACVCEIGGGENGI- 338

Query:   358 CSWRRLPQLPSPVNEFHKVISFCSTVSLHNIIQRE 392
             CSWRR+P LPSPVN+FHKV+SFCSTVS+ ++   E
Sbjct:   339 CSWRRVPCLPSPVNKFHKVVSFCSTVSITDVFHPE 373

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028090 AT1G23390 "AT1G23390" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 64/216 (29%), Positives = 96/216 (44%)

Query:   184 EDRLAVEIYDPHSD--SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFD 241
             EDR AVE++D  S   +WE C  +P       SS +LS A+   + YV    S    SF+
Sbjct:   167 EDRFAVELFDIESGDGAWERCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFN 226

Query:   242 LKKHVWSEVQTLRPPGV-MFSFLIA-SPNMLVLAGMCNAPRGPS-FNLWKV---DELSME 295
                  W+++  L P    ++S  I  S N L++AG+      P+   LW+V   DE  ++
Sbjct:   227 PVTRSWTKLLDLCPGECSLYSRSIGFSVNRLIMAGIIGDEYNPTGIELWEVIDSDESHLK 286

Query:   296 FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK 355
             F  I  MP  +L  L     D    S+    +G+++YV     +        EI  E  K
Sbjct:   287 FESIGSMPETYLEKLRGINSDWPLTSIVLNAVGDMVYVHGAAENGG-EIVAAEI--EGGK 343

Query:   356 CRCSWRRLPQLPSPVNEFH---KVISFCSTVSLHNI 388
               C WR LP   +   + H   +VI  CS V   ++
Sbjct:   344 L-CKWRTLPNADATWKKSHAAERVIVACSNVGFSDL 378

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
 Identities = 34/81 (41%), Positives = 47/81 (58%)

Query:    13 LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN 72
             L+ D+ ER+LS LP     R SSVCK W+S  ++ SF   +A +   +  PWFF+  + N
Sbjct:    70 LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFK--LACSQIPTRDPWFFM--IDN 125

Query:    73 TSSRNNQSFAFDPASNSWFHL 93
              S  N+ SF FD   NSW +L
Sbjct:   126 DS--NSSSFVFDSTENSWKNL 144

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:     7 YSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFF 66
             +S  + L  D+ ERILS LPI ++ RA +VCK W  I+S+  F    ++N+  S RPW+F
Sbjct:    37 FSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNS-VSQRPWYF 95

Query:    67 LFGLHNTSSRNNQSFAFDPASNSW--FHLP 94
             +F    T++ +   +A+DP    W  F LP
Sbjct:    96 MF----TTTDDPSGYAYDPIIRKWYSFDLP 121

GO:0005634 "nucleus" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0048513 "organ development" evidence=IMP

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 35/147 (23%), Positives = 60/147 (40%)

Query:   187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHV 246
             L  E+YD  +D W L   +PA         Y  S L+       G+  + + S       
Sbjct:   264 LPTEVYDSKTDKWSLHQIMPAVNLCSSKMAYCDSRLYLETLSPLGLMMYRLDSGQ----- 318

Query:   247 WSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNAPRG-PSFNLWKVDELSMEFSEIAIMPH 304
             W  +    P  ++  +L+A +   L L G         S  +W++D   + + EI+ MP 
Sbjct:   319 WEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPP 378

Query:   305 DFLYSLVDTEEDDKFASLKCVGLGNLI 331
              +  +L+    + +F   +C G  NLI
Sbjct:   379 KYFRALLRLSAE-RF---ECFGQDNLI 401

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 24/82 (29%), Positives = 39/82 (47%)

Query:    16 DITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSS 75
             D+ E ++S LP+ T  +  +VC+ W ++I + SFS          P  WF+     N +S
Sbjct:   123 DLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIP--WFYTITHENVNS 180

Query:    76 RNNQSFAFDPASNSWFH-LPPA 96
                    +DP+   W H + PA
Sbjct:   181 GQ----VYDPSLKKWHHPIIPA 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2162286 AT5G42350 "AT5G42350" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 24/87 (27%), Positives = 36/87 (41%)

Query:     7 YSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFF 66
             Y     L  DI E  L  LP+ +L+ A  VCK W+S+ +   F  L      +   PW F
Sbjct:   129 YRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF--LQMRREGSFQTPWLF 186

Query:    67 LFGLHNTSSRNNQSFAFDPASNSWFHL 93
             LF        +     +D + + W  +
Sbjct:   187 LFAALKDGCSSGDIHGYDVSQDKWHRI 213

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162301 AT5G42360 "AT5G42360" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 24/87 (27%), Positives = 36/87 (41%)

Query:     7 YSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFF 66
             Y     L  DI E  L  LP+ +L+ A  VCK W+S+ +   F  L      +   PW F
Sbjct:   129 YRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF--LQMRREGSFQTPWLF 186

Query:    67 LFGLHNTSSRNNQSFAFDPASNSWFHL 93
             LF        +     +D + + W  +
Sbjct:   187 LFAALKDGCSSGDIHGYDVSQDKWHRI 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N8Q0 KLHL14 "Kelch-like protein 14" [Gallus gallus (taxid:9031)]

 Score = 85 (35.0 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query:    38 KSWRSIISAPSFSALIAHNTNASPRPWFFLFGLH---NTSSRNNQSFA--FDPASNSWFH 92
             K+W+ +   P  SA   H+       + F+ G     N + +++ +F   +DP  NSW  
Sbjct:   290 KTWKILTIMPYNSA---HHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQ 346

Query:    93 LPPAQEPRAG--SCFIGAN 109
             LPP QE RA   +C +  N
Sbjct:   347 LPPMQERRASFYACRLDKN 365

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

UNIPROTKB|Q5F3N5 KLHL14 "Kelch-like protein 14" [Gallus gallus (taxid:9031)]

 Score = 85 (35.0 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query:    38 KSWRSIISAPSFSALIAHNTNASPRPWFFLFGLH---NTSSRNNQSFA--FDPASNSWFH 92
             K+W+ +   P  SA   H+       + F+ G     N + +++ +F   +DP  NSW  
Sbjct:   344 KTWKILTIMPYNSA---HHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQ 400

Query:    93 LPPAQEPRAG--SCFIGAN 109
             LPP QE RA   +C +  N
Sbjct:   401 LPPMQERRASFYACRLDKN 419

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EB08	FBK69_ARATH	No assigned EC number	0.5606	0.9413	0.9634	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-07
pfam12937	47	pfam12937, F-box-like, F-box-like	9e-06
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-05
pfam00646	48	pfam00646, F-box, F-box domain	2e-05
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	0.001

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 50/231 (21%), Positives = 81/231 (35%), Gaps = 48/231 (20%)

Query: 65  FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRI 124
           +F+ G++  +   N   ++D  + SW  +P    PR        N   +        S  
Sbjct: 298 YFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGI-YNSIS 356

Query: 125 LNT---------SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR 175
           LNT          W    PL F R NP                     N+   I V    
Sbjct: 357 LNTVESWKPGESKWREEPPLIFPRYNP------------------CVVNVNNLIYV---- 394

Query: 176 FIGGLVDIEDRL-AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS 234
            IGG+   ++ L  VE +  +++ W    PLP       S     +    G+ YV G  S
Sbjct: 395 -IGGISKNDELLKTVECFSLNTNKWSKGSPLP------ISHYGGCAIYHDGKIYVIGGIS 447

Query: 235 FS--------VSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCN 277
           +         V S++   + W+E+ +L  P +  S  I +  + V+ G   
Sbjct: 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKY 498

Length = 534

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
           + L  +I  +I S L    L+R + VC+ WR + S  S 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 13 LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          L  +I E ILS L    L+R   V + WRS+I +  F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 13 LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          L  D+   ILS L    L+R S V K WRS++ +   
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 42/180 (23%)

Query: 84  DPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNT---------SWHLTSP 134
            P  + W   PP   PR   C +  N   +          +L T          W   SP
Sbjct: 364 KPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423

Query: 135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFI-VVGGVRFIGGLVDIEDRLAVEIYD 193
           L  S       +++D                   I V+GG+ +I    +I+    VE Y+
Sbjct: 424 LPISHYG-GCAIYHD-----------------GKIYVIGGISYID---NIKVYNIVESYN 462

Query: 194 PHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSS-----FDLKKHVWS 248
           P ++ W     L       +     S  +F  + YV G   +         +D K + W+
Sbjct: 463 PVTNKWTELSSL------NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516

Length = 534

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA02790	480	Kelch-like protein; Provisional	99.98
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.98
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
PLN02193	470	nitrile-specifier protein	99.97
PHA03098	534	kelch-like protein; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.96
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.96
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.95
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.87
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.86
KOG1230	521	consensus Protein containing repeated kelch motifs	99.86
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.85
KOG1230	521	consensus Protein containing repeated kelch motifs	99.82
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.74
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.64
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.59
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.57
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.25
PF13964	50	Kelch_6: Kelch motif	98.9
PF13964	50	Kelch_6: Kelch motif	98.77
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.77
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.75
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.7
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.66
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.59
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.5
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.44
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.42
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.41
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.36
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.33
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.31
smart00612	47	Kelch Kelch domain.	98.3
smart00612	47	Kelch Kelch domain.	98.29
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.25
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.24
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.08
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.93
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.81
PLN02772	398	guanylate kinase	97.78
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.54
PF13854	42	Kelch_5: Kelch motif	97.52
PLN02772	398	guanylate kinase	97.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.36
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.13
PF13854	42	Kelch_5: Kelch motif	97.13
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.08
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.05
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	97.03
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.94
PRK11028	330	6-phosphogluconolactonase; Provisional	96.73
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.57
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.27
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.63
KOG2055	514	consensus WD40 repeat protein [General function pr	95.15
smart00284	255	OLF Olfactomedin-like domains.	94.93
PF03089	337	RAG2: Recombination activating protein 2; InterPro	94.5
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.47
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.44
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.41
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.19
PRK11028	330	6-phosphogluconolactonase; Provisional	94.03
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.97
PRK13684	334	Ycf48-like protein; Provisional	93.93
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.4
smart00284	255	OLF Olfactomedin-like domains.	93.35
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.1
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	93.05
KOG0310	487	consensus Conserved WD40 repeat-containing protein	92.72
KOG2055	514	consensus WD40 repeat protein [General function pr	92.65
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.5
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.47
PRK04792	448	tolB translocation protein TolB; Provisional	92.0
PRK00178	430	tolB translocation protein TolB; Provisional	91.47
KOG0278	334	consensus Serine/threonine kinase receptor-associa	91.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	91.22
PTZ00421	493	coronin; Provisional	90.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.81
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.24
COG4946	668	Uncharacterized protein related to the periplasmic	89.6
PRK13684	334	Ycf48-like protein; Provisional	89.17
KOG0286	343	consensus G-protein beta subunit [General function	88.61
PRK04922	433	tolB translocation protein TolB; Provisional	88.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.58
KOG0289	506	consensus mRNA splicing factor [General function p	87.53
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	87.34
PTZ00420	568	coronin; Provisional	87.21
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	87.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	86.76
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.98
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	85.31
PRK05137	435	tolB translocation protein TolB; Provisional	85.29
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.27
KOG0315	311	consensus G-protein beta subunit-like protein (con	85.01
PRK00178	430	tolB translocation protein TolB; Provisional	84.27
KOG0649	325	consensus WD40 repeat protein [General function pr	83.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	82.17
PRK04043	419	tolB translocation protein TolB; Provisional	82.08
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	81.19
KOG2048	691	consensus WD40 repeat protein [General function pr	80.86
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	80.6
PF03089	337	RAG2: Recombination activating protein 2; InterPro	80.21

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.3e-40  Score=323.06  Aligned_cols=268  Identities=20%  Similarity=0.317  Sum_probs=233.3

Q ss_pred             CCCCEEEEEcccCC-CCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc----------ceEecCCcCc
Q 016239           60 SPRPWFFLFGLHNT-SSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR----------FGFSRILNTS  128 (392)
Q Consensus        60 ~~~~~l~~~gg~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~----------~~ynp~~~~~  128 (392)
                      ...+.++++||... ....+.+.+|||.++.|..+++|+.+|..+++++.+|.||++||.          ++|||. +++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR-TNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC-CCc
Confidence            45678999999886 566788999999999999999999999999999999999999983          899999 799


Q ss_pred             eeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCC
Q 016239          129 WHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPAD  208 (392)
Q Consensus       129 W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  208 (392)
                      |..+++|+.+|..++++++                 +++||++||.+      ......++|+||+.+++|+.+++|+.+
T Consensus       361 W~~~a~M~~~R~~~~v~~l-----------------~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~va~m~~~  417 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVL-----------------DGKLYAVGGFD------GEKSLNSVECYDPVTNKWTPVAPMLTR  417 (571)
T ss_pred             eeccCCccCccccceeEEE-----------------CCEEEEEeccc------cccccccEEEecCCCCcccccCCCCcc
Confidence            9999999999999999999                 99999999985      223456899999999999999999996


Q ss_pred             CCCCCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCC
Q 016239          209 FRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGP  282 (392)
Q Consensus       209 ~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~  282 (392)
                       |.+     +++++++|+||++||.+      +++++|||.+++|+.+++|+..+.. +.+++.+++||++||.+. ...
T Consensus       418 -r~~-----~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~~-~~~  489 (571)
T KOG4441|consen  418 -RSG-----HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFDG-TSA  489 (571)
T ss_pred             -eee-----eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEEECCEEEEECCccC-CCc
Confidence             877     89999999999999965      5899999999999999999985554 447899999999999876 222


Q ss_pred             ceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCccceeee
Q 016239          283 SFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDKCRCSWR  361 (392)
Q Consensus       283 ~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~  361 (392)
                      ...|.+||+.+++|+.++.|+..             |.+.++++.+++||++|| .++......++. ||++|+    |+
T Consensus       490 ~~~VE~ydp~~~~W~~v~~m~~~-------------rs~~g~~~~~~~ly~vGG-~~~~~~l~~ve~ydp~~d~----W~  551 (571)
T KOG4441|consen  490 LSSVERYDPETNQWTMVAPMTSP-------------RSAVGVVVLGGKLYAVGG-FDGNNNLNTVECYDPETDT----WT  551 (571)
T ss_pred             cceEEEEcCCCCceeEcccCccc-------------cccccEEEECCEEEEEec-ccCccccceeEEcCCCCCc----ee
Confidence            34578889999999999999888             469999999999999999 666666777777 999999    99


Q ss_pred             ecCCCCCcccccceEEE
Q 016239          362 RLPQLPSPVNEFHKVIS  378 (392)
Q Consensus       362 ~~~~~p~~~~~~~~~~~  378 (392)
                      ..++ |......+++++
T Consensus       552 ~~~~-~~~~~~~~~~~~  567 (571)
T KOG4441|consen  552 EVTE-PESGRGGAGVAV  567 (571)
T ss_pred             eCCC-ccccccCcceEE
Confidence            9999 655555544444

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=3e-37  Score=301.04  Aligned_cols=237  Identities=10%  Similarity=0.149  Sum_probs=202.4

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc----------ceEecCCcCceeecCCCCcCccCceEEEE
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR----------FGFSRILNTSWHLTSPLRFSRINPLVGVF  147 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~----------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~  147 (392)
                      ..+++||+.+++|..+++||.+|..+++++.+|.||++||.          ++|||. +++|..+++|+.+|..++++++
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE-NKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC-CCeEeeCCCCcchhhceeEEEE
Confidence            46789999999999999999999999999999999999983          789999 7999999999999999999999


Q ss_pred             EcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEE
Q 016239          148 YDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRF  227 (392)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~l  227 (392)
                                       +++||++||.+.      .....++++||+.+++|+.+++||.+ |..     +++++++|+|
T Consensus       351 -----------------~g~IYviGG~~~------~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~-----~~~~~~~g~I  401 (557)
T PHA02713        351 -----------------DDTIYAIGGQNG------TNVERTIECYTMGDDKWKMLPDMPIA-LSS-----YGMCVLDQYI  401 (557)
T ss_pred             -----------------CCEEEEECCcCC------CCCCceEEEEECCCCeEEECCCCCcc-ccc-----ccEEEECCEE
Confidence                             999999999731      12345899999999999999999998 665     7888999999


Q ss_pred             EEEeecc-----------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCce
Q 016239          228 YVFGIYS-----------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSF  284 (392)
Q Consensus       228 y~~gg~~-----------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~  284 (392)
                      |++||..                       +.+++|||.+++|+.+++++..+. .+.+++++|+||++||.........
T Consensus       402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~  480 (557)
T PHA02713        402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKT  480 (557)
T ss_pred             EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccce
Confidence            9999964                       368999999999999998877544 4567899999999998653322223


Q ss_pred             eEEEeecCc-cceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCccceeeee
Q 016239          285 NLWKVDELS-MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDKCRCSWRR  362 (392)
Q Consensus       285 ~v~~~d~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~~  362 (392)
                      .+.+||+.+ ++|+.+++||..+             ..+++++++|+||++||.. +.   ..+|+ |+.+++    |+.
T Consensus       481 ~ve~Ydp~~~~~W~~~~~m~~~r-------------~~~~~~~~~~~iyv~Gg~~-~~---~~~e~yd~~~~~----W~~  539 (557)
T PHA02713        481 CIFRYNTNTYNGWELITTTESRL-------------SALHTILHDNTIMMLHCYE-SY---MLQDTFNVYTYE----WNH  539 (557)
T ss_pred             eEEEecCCCCCCeeEccccCccc-------------ccceeEEECCEEEEEeeec-ce---eehhhcCccccc----ccc
Confidence            578899999 8999999999984             5899999999999999943 21   24676 999999    999


Q ss_pred             cCCC
Q 016239          363 LPQL  366 (392)
Q Consensus       363 ~~~~  366 (392)
                      +++-
T Consensus       540 ~~~~  543 (557)
T PHA02713        540 ICHQ  543 (557)
T ss_pred             hhhh
Confidence            8753

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3e-35  Score=285.74  Aligned_cols=245  Identities=20%  Similarity=0.322  Sum_probs=210.2

Q ss_pred             ChhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC-CCCCCCceeeeeCCCCceeeCCCCCCCCCcce
Q 016239           26 PIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN-TSSRNNQSFAFDPASNSWFHLPPAQEPRAGSC  104 (392)
Q Consensus        26 P~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~  104 (392)
                      +...+..+++..+.|..+...|.-..   +...+..++.+|+.||.+ +...++.++.|||.+++|..+++|+.+|..++
T Consensus       299 ~~~~ve~yd~~~~~w~~~a~m~~~r~---~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~  375 (571)
T KOG4441|consen  299 SLRSVECYDPKTNEWSSLAPMPSPRC---RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG  375 (571)
T ss_pred             ccceeEEecCCcCcEeecCCCCcccc---cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce
Confidence            45677788888999999998884222   345566788999999999 67788999999999999999999999999999


Q ss_pred             EEeecceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239          105 FIGANGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR  175 (392)
Q Consensus       105 ~~~~~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~  175 (392)
                      +++++|.||++||.         ++|||. +++|..+++|+.+|+.++++++                 +++||++||.+
T Consensus       376 v~~l~g~iYavGG~dg~~~l~svE~YDp~-~~~W~~va~m~~~r~~~gv~~~-----------------~g~iYi~GG~~  437 (571)
T KOG4441|consen  376 VAVLDGKLYAVGGFDGEKSLNSVECYDPV-TNKWTPVAPMLTRRSGHGVAVL-----------------GGKLYIIGGGD  437 (571)
T ss_pred             eEEECCEEEEEeccccccccccEEEecCC-CCcccccCCCCcceeeeEEEEE-----------------CCEEEEEcCcC
Confidence            99999999999983         899999 8999999999999999999999                 99999999974


Q ss_pred             ecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc-----EEEEEECCCCceeec
Q 016239          176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF-----SVSSFDLKKHVWSEV  250 (392)
Q Consensus       176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~-----~i~~yd~~~~~W~~i  250 (392)
                      ...     ....++++|||.+++|+.+++|+.+ |.+     +++++.+++||++||.++     ++++||+.+++|+.+
T Consensus       438 ~~~-----~~l~sve~YDP~t~~W~~~~~M~~~-R~~-----~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  438 GSS-----NCLNSVECYDPETNTWTLIAPMNTR-RSG-----FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             CCc-----cccceEEEEcCCCCceeecCCcccc-ccc-----ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            211     1457999999999999999999998 776     889999999999999874     689999999999999


Q ss_pred             ccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239          251 QTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD  305 (392)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~  305 (392)
                      .++.. ++....+++.+++||++||.+.... ...|-.||+.+++|+.... +..
T Consensus       507 ~~m~~-~rs~~g~~~~~~~ly~vGG~~~~~~-l~~ve~ydp~~d~W~~~~~-~~~  558 (571)
T KOG4441|consen  507 APMTS-PRSAVGVVVLGGKLYAVGGFDGNNN-LNTVECYDPETDTWTEVTE-PES  558 (571)
T ss_pred             ccCcc-ccccccEEEECCEEEEEecccCccc-cceeEEcCCCCCceeeCCC-ccc
Confidence            77776 4456667999999999999655432 3445566999999999999 544

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=4.5e-34  Score=278.81  Aligned_cols=241  Identities=12%  Similarity=0.135  Sum_probs=196.9

Q ss_pred             HHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC-CCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee
Q 016239           30 LIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN-TSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA  108 (392)
Q Consensus        30 l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~  108 (392)
                      +.++++..++|..+...|.-..   .+.++..++.+|++||.. .....+.+++|||.+++|..+++|+.+|..++++++
T Consensus       274 v~~yd~~~~~W~~l~~mp~~r~---~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        274 ILVYNINTMEYSVISTIPNHII---NYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             EEEEeCCCCeEEECCCCCcccc---ceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            4456777788998887765322   223455688999999975 334567899999999999999999999999999999


Q ss_pred             cceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCc
Q 016239          109 NGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG  179 (392)
Q Consensus       109 ~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~  179 (392)
                      +|.||++||.         ++|||. +++|..+++||.+|..++++++                 +++||++||.+....
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~-~~~W~~~~~mp~~r~~~~~~~~-----------------~g~IYviGG~~~~~~  412 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMG-DDKWKMLPDMPIALSSYGMCVL-----------------DQYIYIIGGRTEHID  412 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECC-CCeEEECCCCCcccccccEEEE-----------------CCEEEEEeCCCcccc
Confidence            9999999983         799999 7999999999999999999999                 999999999742110


Q ss_pred             c------------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEE
Q 016239          180 L------------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFD  241 (392)
Q Consensus       180 ~------------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd  241 (392)
                      .            .+.....++++|||.+++|+.+++|+.+ |..     +++++++|+||++||..      ..+++||
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd  486 (557)
T PHA02713        413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIR-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYN  486 (557)
T ss_pred             cccccccccccccccccccceEEEECCCCCeEeecCCCCcc-ccc-----CcEEEECCEEEEEeCCCCCCccceeEEEec
Confidence            0            0011245799999999999999999987 766     78999999999999964      3578999


Q ss_pred             CCC-CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          242 LKK-HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       242 ~~~-~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      |.+ ++|+.+++++..+ ....+++++|+||++||.++.    ..+.+||+.+++|+.+.+-
T Consensus       487 p~~~~~W~~~~~m~~~r-~~~~~~~~~~~iyv~Gg~~~~----~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        487 TNTYNGWELITTTESRL-SALHTILHDNTIMMLHCYESY----MLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             CCCCCCeeEccccCccc-ccceeEEECCEEEEEeeecce----eehhhcCcccccccchhhh
Confidence            999 8999999888744 456678999999999997652    3566789999999987663

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=3e-32  Score=252.73  Aligned_cols=267  Identities=18%  Similarity=0.269  Sum_probs=192.9

Q ss_pred             hhhhhhhcCc--chhhHhhhccCCCCCCEEEEEcccCC--CCCCCceeeeeCCCCceeeCCCCC-CCCC---cceEEeec
Q 016239           38 KSWRSIISAP--SFSALIAHNTNASPRPWFFLFGLHNT--SSRNNQSFAFDPASNSWFHLPPAQ-EPRA---GSCFIGAN  109 (392)
Q Consensus        38 k~W~~l~~~~--~f~~~~~~~~~~~~~~~l~~~gg~~~--~~~~~~~~~yd~~~~~W~~~~~~~-~~r~---~~~~~~~~  109 (392)
                      ..|..+....  ....+.. +.++..++.||++||...  ....++++.||+.+++|..++++. .|+.   .+++++.+
T Consensus         7 ~~W~~~~~~~~~~P~pR~~-h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~   85 (341)
T PLN02153          7 GGWIKVEQKGGKGPGPRCS-HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG   85 (341)
T ss_pred             CeEEEecCCCCCCCCCCCc-ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC
Confidence            4588776632  1123332 344556789999999743  223468999999999999987664 3443   56788889


Q ss_pred             ceEEeecCc---------ceEecCCcCceeecCCC-----CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239          110 GFFFTTTPR---------FGFSRILNTSWHLTSPL-----RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR  175 (392)
Q Consensus       110 g~i~v~gg~---------~~ynp~~~~~W~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~  175 (392)
                      +.||++||.         ++||+. +++|+.++++     |.+|..|++++.                 +++|||+||..
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~p~~R~~~~~~~~-----------------~~~iyv~GG~~  147 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTV-KNEWTFLTKLDEEGGPEARTFHSMASD-----------------ENHVYVFGGVS  147 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECC-CCEEEEeccCCCCCCCCCceeeEEEEE-----------------CCEEEEECCcc
Confidence            999999983         799999 7999999887     788999999988                 99999999975


Q ss_pred             ecCcccccccceEEEEEeCCCCCeecCCCCCC--CCCCCCCccceeeEEECCEEEEEeecc-------------cEEEEE
Q 016239          176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPA--DFRSGYSSQYLSSALFRGRFYVFGIYS-------------FSVSSF  240 (392)
Q Consensus       176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~g~ly~~gg~~-------------~~i~~y  240 (392)
                      ..+.........++++||+.+++|+.++.+..  ..|.+     ++++.++++||++||..             +.+++|
T Consensus       148 ~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~-----~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y  222 (341)
T PLN02153        148 KGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG-----AGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFF  222 (341)
T ss_pred             CCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc-----ceEEEECCeEEEEeccccccccCCccceecCceEEE
Confidence            32211111123579999999999999986541  22555     78888999999998742             479999


Q ss_pred             ECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeecCC--------CCCceeEEEeecCccceEecc-----cCCHH
Q 016239          241 DLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCNAP--------RGPSFNLWKVDELSMEFSEIA-----IMPHD  305 (392)
Q Consensus       241 d~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~~~--------~~~~~~v~~~d~~~~~W~~~~-----~~p~~  305 (392)
                      |+.+++|+.+...  .|..+..+.+++++++|||+||....        .....++|+||+.+++|+.+.     .+|..
T Consensus       223 d~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~  302 (341)
T PLN02153        223 DPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRG  302 (341)
T ss_pred             EcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCc
Confidence            9999999998653  23344556678889999999995321        112458999999999999886     34444


Q ss_pred             HHHhhcCCcccCccceeEEEEeC-CEEEEEeccccC
Q 016239          306 FLYSLVDTEEDDKFASLKCVGLG-NLIYVFNEEYHK  340 (392)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~gg~~~~  340 (392)
                      +.            ...++.+.+ ++|||+||....
T Consensus       303 ~~------------~~~~~~v~~~~~~~~~gG~~~~  326 (341)
T PLN02153        303 WT------------AYTTATVYGKNGLLMHGGKLPT  326 (341)
T ss_pred             cc------------cccccccCCcceEEEEcCcCCC
Confidence            21            122333444 589999996443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=5.4e-32  Score=251.86  Aligned_cols=250  Identities=17%  Similarity=0.172  Sum_probs=185.1

Q ss_pred             CCCCCCCCCcceEEeecceEEeecCc-----ceEec--CCcCceeecCCCC-cCccCceEEEEEcCCCCcccccCCcccC
Q 016239           93 LPPAQEPRAGSCFIGANGFFFTTTPR-----FGFSR--ILNTSWHLTSPLR-FSRINPLVGVFYDHDRGHCDLASGFACN  164 (392)
Q Consensus        93 ~~~~~~~r~~~~~~~~~g~i~v~gg~-----~~ynp--~~~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~  164 (392)
                      +++||.++...++++.++.|||+||.     ++||+  . +++|..+++|| .+|..++++++                 
T Consensus         1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~-~~~W~~l~~~p~~~R~~~~~~~~-----------------   62 (346)
T TIGR03547         1 LPDLPVGFKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKP-SKGWQKIADFPGGPRNQAVAAAI-----------------   62 (346)
T ss_pred             CCCCCccccCceEEEECCEEEEEccccCCeeEEEECCCC-CCCceECCCCCCCCcccceEEEE-----------------
Confidence            46788898888887889999999984     68885  4 67999999998 58999999999                 


Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC-CCCCCCCCCCccceeeE-EECCEEEEEeecc--------
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP-LPADFRSGYSSQYLSSA-LFRGRFYVFGIYS--------  234 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~--------  234 (392)
                      +++||++||..............++++||+.+++|+.++. +|.. +.+     ++++ .++++||++||..        
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~-----~~~~~~~~g~IYviGG~~~~~~~~~~  136 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLG-----ASGFSLHNGQAYFTGGVNKNIFDGYF  136 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-ccc-----eeEEEEeCCEEEEEcCcChHHHHHHH
Confidence            9999999997421100001134589999999999999973 4444 443     4555 6899999999964        


Q ss_pred             -------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239          235 -------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS  283 (392)
Q Consensus       235 -------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~  283 (392)
                                                     +.+++||+.+++|+.+++++...+..++++.++++||++||.......+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~  216 (346)
T TIGR03547       137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRT  216 (346)
T ss_pred             hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccc
Confidence                                           4799999999999999888764555677788999999999975433333


Q ss_pred             eeEEEe--ecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC----------------CCeE
Q 016239          284 FNLWKV--DELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK----------------YPAC  345 (392)
Q Consensus       284 ~~v~~~--d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~----------------~~~~  345 (392)
                      .++|.|  |+++++|++++.||..+..      ...++..+++++.+++|||+||.....                ....
T Consensus       217 ~~~~~y~~~~~~~~W~~~~~m~~~r~~------~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  290 (346)
T TIGR03547       217 AEVKQYLFTGGKLEWNKLPPLPPPKSS------SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAW  290 (346)
T ss_pred             hheEEEEecCCCceeeecCCCCCCCCC------ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCcee
Confidence            445544  5677899999999865310      001123556778999999999954211                1123


Q ss_pred             EEEe-ecCCCccceeeeecCCCCCcccccceE
Q 016239          346 VCEI-GTESDKCRCSWRRLPQLPSPVNEFHKV  376 (392)
Q Consensus       346 ~~~~-d~~~~~~~~~W~~~~~~p~~~~~~~~~  376 (392)
                      .+|+ |+++++    |+.+++||.++..++++
T Consensus       291 ~~e~yd~~~~~----W~~~~~lp~~~~~~~~~  318 (346)
T TIGR03547       291 SSEVYALDNGK----WSKVGKLPQGLAYGVSV  318 (346)
T ss_pred             EeeEEEecCCc----ccccCCCCCCceeeEEE
Confidence            4566 999999    99999999987655443

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=7.5e-32  Score=265.13  Aligned_cols=262  Identities=16%  Similarity=0.185  Sum_probs=205.0

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc----------ceEecCCcCceee
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR----------FGFSRILNTSWHL  131 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~----------~~ynp~~~~~W~~  131 (392)
                      ...+++.+|..  ........|++..++|..+++++. +..+++++.++.||++||.          ++||+. +++|..
T Consensus       250 ~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~  325 (534)
T PHA03098        250 GSIIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK-TKSWNK  325 (534)
T ss_pred             CcceEeecccc--hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCC-CCeeeE
Confidence            34455544433  123445678988999988876653 3345788889999999983          799999 799999


Q ss_pred             cCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCC
Q 016239          132 TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRS  211 (392)
Q Consensus       132 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~  211 (392)
                      +++|+.+|..++++++                 +++||++||.+      ......++++||+.+++|+.++++|.+ |.
T Consensus       326 ~~~~~~~R~~~~~~~~-----------------~~~lyv~GG~~------~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~  381 (534)
T PHA03098        326 VPELIYPRKNPGVTVF-----------------NNRIYVIGGIY------NSISLNTVESWKPGESKWREEPPLIFP-RY  381 (534)
T ss_pred             CCCCCcccccceEEEE-----------------CCEEEEEeCCC------CCEecceEEEEcCCCCceeeCCCcCcC-Cc
Confidence            9999999999999999                 99999999974      123456899999999999999999987 77


Q ss_pred             CCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCC--Cc
Q 016239          212 GYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRG--PS  283 (392)
Q Consensus       212 ~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~--~~  283 (392)
                      .     ++++.++++||++||..      +.+++||+.+++|+.++++|..+. .+.++..+++||++||......  ..
T Consensus       382 ~-----~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~  455 (534)
T PHA03098        382 N-----PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVY  455 (534)
T ss_pred             c-----ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCccc
Confidence            6     78889999999999953      479999999999999988776544 4556888999999998654321  12


Q ss_pred             eeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          284 FNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       284 ~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      ..+++||+.+++|+.++.+|..             |..++++..+++|||+||.........+..||+++++    |+.+
T Consensus       456 ~~v~~yd~~~~~W~~~~~~~~~-------------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~  518 (534)
T PHA03098        456 NIVESYNPVTNKWTELSSLNFP-------------RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT----WTLF  518 (534)
T ss_pred             ceEEEecCCCCceeeCCCCCcc-------------cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE----EEec
Confidence            4589999999999999988865             3467778889999999996543322233334999999    9999


Q ss_pred             CCCCCcccccc
Q 016239          364 PQLPSPVNEFH  374 (392)
Q Consensus       364 ~~~p~~~~~~~  374 (392)
                      +.+|.......
T Consensus       519 ~~~p~~~~~~~  529 (534)
T PHA03098        519 CKFPKVIGSLE  529 (534)
T ss_pred             CCCccccccee
Confidence            99887555443

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=8.4e-32  Score=249.68  Aligned_cols=245  Identities=16%  Similarity=0.219  Sum_probs=186.5

Q ss_pred             CCCCceeeCCC----CCCCCCcceEEeecceEEeecCc-----------ceEecCCcCceeecCCCC-cCcc---CceEE
Q 016239           85 PASNSWFHLPP----AQEPRAGSCFIGANGFFFTTTPR-----------FGFSRILNTSWHLTSPLR-FSRI---NPLVG  145 (392)
Q Consensus        85 ~~~~~W~~~~~----~~~~r~~~~~~~~~g~i~v~gg~-----------~~ynp~~~~~W~~~~~~~-~~r~---~~~~~  145 (392)
                      +...+|..+..    +|.||..|++++.++.||++||.           ++||+. +++|..++++. .+|.   .++++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~p~~~~~~~~~~   82 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN-THTWSIAPANGDVPRISCLGVRMV   82 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC-CCEEEEcCccCCCCCCccCceEEE
Confidence            45677998865    78899999999999999999883           789999 79999988764 3443   57788


Q ss_pred             EEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-----CCCCCCCCCccceee
Q 016239          146 VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-----PADFRSGYSSQYLSS  220 (392)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~~~~~~~~~~~~~  220 (392)
                      ++                 +++||++||...      .....++++||+.+++|+.++++     |.+ |..     |++
T Consensus        83 ~~-----------------~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~~-----~~~  133 (341)
T PLN02153         83 AV-----------------GTKLYIFGGRDE------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RTF-----HSM  133 (341)
T ss_pred             EE-----------------CCEEEEECCCCC------CCccCcEEEEECCCCEEEEeccCCCCCCCCC-cee-----eEE
Confidence            88                 999999999742      12345899999999999999876     544 554     888


Q ss_pred             EEECCEEEEEeecc-----------cEEEEEECCCCceeecccCC--CCcccceeEEeeCCeEEEEEeecCC-------C
Q 016239          221 ALFRGRFYVFGIYS-----------FSVSSFDLKKHVWSEVQTLR--PPGVMFSFLIASPNMLVLAGMCNAP-------R  280 (392)
Q Consensus       221 ~~~~g~ly~~gg~~-----------~~i~~yd~~~~~W~~i~~~~--~~~~~~~~~~~~~g~l~v~gg~~~~-------~  280 (392)
                      +..+++||++||..           .++++||+++++|+.++.+.  +..+..+.+++++++||++||....       .
T Consensus       134 ~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~  213 (341)
T PLN02153        134 ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSD  213 (341)
T ss_pred             EEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccc
Confidence            99999999999964           26899999999999987653  2345555678899999999875321       1


Q ss_pred             CCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC---------CCCeEEEE
Q 016239          281 GPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK---------KYPACVCE  348 (392)
Q Consensus       281 ~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~---------~~~~~~~~  348 (392)
                      ....++++||+.+++|+++..   +|..             |..+++++++++|||+||....         .....++.
T Consensus       214 ~~~~~v~~yd~~~~~W~~~~~~g~~P~~-------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~  280 (341)
T PLN02153        214 YESNAVQFFDPASGKWTEVETTGAKPSA-------------RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYA  280 (341)
T ss_pred             eecCceEEEEcCCCcEEeccccCCCCCC-------------cceeeeEEECCEEEEECcccCCccccccccccccccEEE
Confidence            113578899999999999875   3444             5588999999999999996321         11124456


Q ss_pred             eecCCCccceeeeecC-----CCCCcccccceE
Q 016239          349 IGTESDKCRCSWRRLP-----QLPSPVNEFHKV  376 (392)
Q Consensus       349 ~d~~~~~~~~~W~~~~-----~~p~~~~~~~~~  376 (392)
                      +|+++++    |+.++     ++|..+..++++
T Consensus       281 ~d~~~~~----W~~~~~~~~~~~pr~~~~~~~~  309 (341)
T PLN02153        281 LDTETLV----WEKLGECGEPAMPRGWTAYTTA  309 (341)
T ss_pred             EEcCccE----EEeccCCCCCCCCCcccccccc
Confidence            6999999    99986     455544444433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=2.5e-31  Score=244.84  Aligned_cols=240  Identities=15%  Similarity=0.124  Sum_probs=188.2

Q ss_pred             CCCCCEEEEEcccCCCC----------CCCceeeee-CCC-CceeeCCCCCCCCCcceEEeecceEEeecCc--------
Q 016239           59 ASPRPWFFLFGLHNTSS----------RNNQSFAFD-PAS-NSWFHLPPAQEPRAGSCFIGANGFFFTTTPR--------  118 (392)
Q Consensus        59 ~~~~~~l~~~gg~~~~~----------~~~~~~~yd-~~~-~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~--------  118 (392)
                      ...++.||++||.+...          ..++++.|+ +.. .+|..+++||.+|..+++++.++.||++||.        
T Consensus        10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~   89 (323)
T TIGR03548        10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSS   89 (323)
T ss_pred             eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCcee
Confidence            44678899999976432          224677775 332 2699999999999888888889999999983        


Q ss_pred             -ceEecCCcCce----eecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEe
Q 016239          119 -FGFSRILNTSW----HLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYD  193 (392)
Q Consensus       119 -~~ynp~~~~~W----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd  193 (392)
                       ++||+. +++|    +.++++|.+|..++++++                 +++||++||..      +.....++++||
T Consensus        90 v~~~d~~-~~~w~~~~~~~~~lp~~~~~~~~~~~-----------------~~~iYv~GG~~------~~~~~~~v~~yd  145 (323)
T TIGR03548        90 VYRITLD-ESKEELICETIGNLPFTFENGSACYK-----------------DGTLYVGGGNR------NGKPSNKSYLFN  145 (323)
T ss_pred             EEEEEEc-CCceeeeeeEcCCCCcCccCceEEEE-----------------CCEEEEEeCcC------CCccCceEEEEc
Confidence             789998 6777    788999999999999999                 99999999963      223356899999


Q ss_pred             CCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc----cEEEEEECCCCceeecccCCC-----CcccceeEE
Q 016239          194 PHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS----FSVSSFDLKKHVWSEVQTLRP-----PGVMFSFLI  264 (392)
Q Consensus       194 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~i~~yd~~~~~W~~i~~~~~-----~~~~~~~~~  264 (392)
                      +.+++|+.++++|...|..     +.++.++++||++||..    .++++||+++++|+.++.++.     .....++++
T Consensus       146 ~~~~~W~~~~~~p~~~r~~-----~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~  220 (323)
T TIGR03548       146 LETQEWFELPDFPGEPRVQ-----PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK  220 (323)
T ss_pred             CCCCCeeECCCCCCCCCCc-----ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE
Confidence            9999999999887533665     77788999999999975    357899999999999987532     222344455


Q ss_pred             eeCCeEEEEEeecCCC-------------------------------CCceeEEEeecCccceEecccCCHHHHHhhcCC
Q 016239          265 ASPNMLVLAGMCNAPR-------------------------------GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDT  313 (392)
Q Consensus       265 ~~~g~l~v~gg~~~~~-------------------------------~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~  313 (392)
                      ..+++||++||.....                               .....+++||+.+++|+.++.+|..        
T Consensus       221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~--------  292 (323)
T TIGR03548       221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF--------  292 (323)
T ss_pred             ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc--------
Confidence            6689999999865321                               0024688999999999999988743        


Q ss_pred             cccCccceeEEEEeCCEEEEEecccc
Q 016239          314 EEDDKFASLKCVGLGNLIYVFNEEYH  339 (392)
Q Consensus       314 ~~~~~~~~~~~~~~~~~i~v~gg~~~  339 (392)
                          .|..++++.++++||++||+..
T Consensus       293 ----~r~~~~~~~~~~~iyv~GG~~~  314 (323)
T TIGR03548       293 ----ARCGAALLLTGNNIFSINGELK  314 (323)
T ss_pred             ----ccCchheEEECCEEEEEecccc
Confidence                1457889999999999999643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=6.2e-31  Score=244.72  Aligned_cols=242  Identities=16%  Similarity=0.149  Sum_probs=182.8

Q ss_pred             CCCCCCEEEEEcccCCCCCCCceeeeeC--CCCceeeCCCCC-CCCCcceEEeecceEEeecCc---------------c
Q 016239           58 NASPRPWFFLFGLHNTSSRNNQSFAFDP--ASNSWFHLPPAQ-EPRAGSCFIGANGFFFTTTPR---------------F  119 (392)
Q Consensus        58 ~~~~~~~l~~~gg~~~~~~~~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~g~i~v~gg~---------------~  119 (392)
                      ++..++.||++||...    ..++.||+  .+++|..+++|| .+|..+++++.++.||++||.               +
T Consensus        13 ~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~   88 (346)
T TIGR03547        13 GAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVY   88 (346)
T ss_pred             EEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEE
Confidence            4456889999999643    56888985  678999999998 589989999999999999982               6


Q ss_pred             eEecCCcCceeecC-CCCcCccCceEE-EEEcCCCCcccccCCcccCCCeEEEEeceeecCc---c------c-------
Q 016239          120 GFSRILNTSWHLTS-PLRFSRINPLVG-VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG---L------V-------  181 (392)
Q Consensus       120 ~ynp~~~~~W~~~~-~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~---~------~-------  181 (392)
                      +|||. +++|+.++ +++..|..++++ ++                 +++||++||.+....   .      .       
T Consensus        89 ~Yd~~-~~~W~~~~~~~p~~~~~~~~~~~~-----------------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  150 (346)
T TIGR03547        89 RYDPK-KNSWQKLDTRSPVGLLGASGFSLH-----------------NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD  150 (346)
T ss_pred             EEECC-CCEEecCCCCCCCcccceeEEEEe-----------------CCEEEEEcCcChHHHHHHHhhHhhcCccchhhh
Confidence            89999 79999987 456666666665 57                 999999999742100   0      0       


Q ss_pred             ------------ccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEE--
Q 016239          182 ------------DIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFD--  241 (392)
Q Consensus       182 ------------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd--  241 (392)
                                  ......++++||+.+++|+.+++||...|..     ++++.++++||++||..      ..++.||  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~  225 (346)
T TIGR03547       151 KLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG-----SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFT  225 (346)
T ss_pred             hhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC-----ceEEEECCEEEEEeeeeCCCccchheEEEEec
Confidence                        0001257999999999999999998633655     78888999999999964      2355554  


Q ss_pred             CCCCceeecccCCCCcc------cceeEEeeCCeEEEEEeecCCCC----------------CceeEEEeecCccceEec
Q 016239          242 LKKHVWSEVQTLRPPGV------MFSFLIASPNMLVLAGMCNAPRG----------------PSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~------~~~~~~~~~g~l~v~gg~~~~~~----------------~~~~v~~~d~~~~~W~~~  299 (392)
                      +++++|+.+++++..+.      ..+.+++++++||++||......                ....+.+||+++++|+.+
T Consensus       226 ~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~  305 (346)
T TIGR03547       226 GGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV  305 (346)
T ss_pred             CCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence            57789999988865331      23346788999999998642110                012455679999999999


Q ss_pred             ccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecccc
Q 016239          300 AIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYH  339 (392)
Q Consensus       300 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~  339 (392)
                      ..||..+             ..+++++.+++|||+||...
T Consensus       306 ~~lp~~~-------------~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       306 GKLPQGL-------------AYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             CCCCCCc-------------eeeEEEEcCCEEEEEeccCC
Confidence            9999874             46778889999999999654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.2e-30  Score=248.84  Aligned_cols=259  Identities=16%  Similarity=0.201  Sum_probs=195.5

Q ss_pred             CCCEEEEEcccCCCCCCCceeee--eCCC----CceeeCCC---CCCCCCcceEEeecceEEeecCc-----------ce
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAF--DPAS----NSWFHLPP---AQEPRAGSCFIGANGFFFTTTPR-----------FG  120 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~y--d~~~----~~W~~~~~---~~~~r~~~~~~~~~g~i~v~gg~-----------~~  120 (392)
                      .++.|+.|.|+... .+..+-.|  ++.+    ++|..+.+   +|.||..|+++..++.||++||.           ++
T Consensus       119 ~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~  197 (470)
T PLN02193        119 QGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYV  197 (470)
T ss_pred             cCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEE
Confidence            46667777776543 23444444  7655    79998875   57899999999999999999982           79


Q ss_pred             EecCCcCceeecCCC---Cc-CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCC
Q 016239          121 FSRILNTSWHLTSPL---RF-SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHS  196 (392)
Q Consensus       121 ynp~~~~~W~~~~~~---~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~  196 (392)
                      ||+. +++|..++++   |. .|..++++++                 +++||++||.+.      ....+++++||+.+
T Consensus       198 yD~~-~~~W~~~~~~g~~P~~~~~~~~~v~~-----------------~~~lYvfGG~~~------~~~~ndv~~yD~~t  253 (470)
T PLN02193        198 FDLE-TRTWSISPATGDVPHLSCLGVRMVSI-----------------GSTLYVFGGRDA------SRQYNGFYSFDTTT  253 (470)
T ss_pred             EECC-CCEEEeCCCCCCCCCCcccceEEEEE-----------------CCEEEEECCCCC------CCCCccEEEEECCC
Confidence            9999 7999987653   33 2457778888                 999999999742      12356899999999


Q ss_pred             CCeecCCCC---CCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeecccCC--CCcccceeEEee
Q 016239          197 DSWELCPPL---PADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQTLR--PPGVMFSFLIAS  266 (392)
Q Consensus       197 ~~W~~~~~~---~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~~~~--~~~~~~~~~~~~  266 (392)
                      ++|+.++++   |.+ |..     |+++.++++||++||..     ..+++||+.+++|+.++.+.  +..+..+.++++
T Consensus       254 ~~W~~l~~~~~~P~~-R~~-----h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~  327 (470)
T PLN02193        254 NEWKLLTPVEEGPTP-RSF-----HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV  327 (470)
T ss_pred             CEEEEcCcCCCCCCC-ccc-----eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE
Confidence            999999877   555 665     88889999999999975     47899999999999986532  234455667888


Q ss_pred             CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC-----
Q 016239          267 PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK-----  341 (392)
Q Consensus       267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~-----  341 (392)
                      +++||++||....  ...++|+||+.+++|+++..++..          +.+|..++++.++++|||+||.....     
T Consensus       328 ~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~----------P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~  395 (470)
T PLN02193        328 QGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVR----------PSERSVFASAAVGKHIVIFGGEIAMDPLAHV  395 (470)
T ss_pred             CCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCC----------CCCcceeEEEEECCEEEEECCccCCcccccc
Confidence            9999999986432  246799999999999999765211          11256889999999999999964311     


Q ss_pred             ----CCeEEEEeecCCCccceeeeecCCC
Q 016239          342 ----YPACVCEIGTESDKCRCSWRRLPQL  366 (392)
Q Consensus       342 ----~~~~~~~~d~~~~~~~~~W~~~~~~  366 (392)
                          ....++.+|+.+++    |+.++.+
T Consensus       396 ~~~~~~ndv~~~D~~t~~----W~~~~~~  420 (470)
T PLN02193        396 GPGQLTDGTFALDTETLQ----WERLDKF  420 (470)
T ss_pred             CccceeccEEEEEcCcCE----EEEcccC
Confidence                11124445999999    9999765

>PHA02790 Kelch-like protein; Provisional

Probab=99.98  E-value=5.1e-31  Score=253.90  Aligned_cols=203  Identities=19%  Similarity=0.245  Sum_probs=175.0

Q ss_pred             CCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc------ceEecCCcCceeecC
Q 016239           60 SPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR------FGFSRILNTSWHLTS  133 (392)
Q Consensus        60 ~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~------~~ynp~~~~~W~~~~  133 (392)
                      ..++.+|++||.+.......++.|||.+++|..+++|+.+|..+++++.+|.||++||.      ++|||. +++|..++
T Consensus       269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~-~n~W~~~~  347 (480)
T PHA02790        269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHG-DAAWVNMP  347 (480)
T ss_pred             EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECC-CCeEEECC
Confidence            36788999999876556678999999999999999999999999999999999999993      899999 79999999


Q ss_pred             CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCC
Q 016239          134 PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGY  213 (392)
Q Consensus       134 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~  213 (392)
                      +|+.+|..++++++                 +++||++||.+.        ...++++||+.+++|+.+++|+.+ |.. 
T Consensus       348 ~l~~~r~~~~~~~~-----------------~g~IYviGG~~~--------~~~~ve~ydp~~~~W~~~~~m~~~-r~~-  400 (480)
T PHA02790        348 SLLKPRCNPAVASI-----------------NNVIYVIGGHSE--------TDTTTEYLLPNHDQWQFGPSTYYP-HYK-  400 (480)
T ss_pred             CCCCCCcccEEEEE-----------------CCEEEEecCcCC--------CCccEEEEeCCCCEEEeCCCCCCc-ccc-
Confidence            99999999999999                 999999999731        124799999999999999999987 665 


Q ss_pred             CccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          214 SSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       214 ~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                          +++++++|+||++||   .+.+||+++++|+.+++++.++ ..+.+++.+|+||++||..... ....+.+||+.+
T Consensus       401 ----~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~  471 (480)
T PHA02790        401 ----SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRT  471 (480)
T ss_pred             ----ceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCc-ccceEEEEECCC
Confidence                788899999999998   4689999999999998887644 4556689999999999965332 134677889999


Q ss_pred             cceEec
Q 016239          294 MEFSEI  299 (392)
Q Consensus       294 ~~W~~~  299 (392)
                      ++|+..
T Consensus       472 ~~W~~~  477 (480)
T PHA02790        472 YSWNIW  477 (480)
T ss_pred             CeEEec
Confidence            999864

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.98  E-value=3.9e-30  Score=241.12  Aligned_cols=259  Identities=15%  Similarity=0.155  Sum_probs=189.3

Q ss_pred             cCCCCCCEEEEEcccCCCCCCCceeeeeCC--CCceeeCCCCC-CCCCcceEEeecceEEeecC---------------c
Q 016239           57 TNASPRPWFFLFGLHNTSSRNNQSFAFDPA--SNSWFHLPPAQ-EPRAGSCFIGANGFFFTTTP---------------R  118 (392)
Q Consensus        57 ~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~g~i~v~gg---------------~  118 (392)
                      ..+..++.+|++||...    ..++.||+.  +++|..+++++ .+|..+++++.++.||++||               +
T Consensus        33 ~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v  108 (376)
T PRK14131         33 TGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDV  108 (376)
T ss_pred             eEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccE
Confidence            34456889999988643    347888886  47899999987 47888888999999999987               2


Q ss_pred             ceEecCCcCceeecCC-CCcCccCceEEE-EEcCCCCcccccCCcccCCCeEEEEeceeecC---cc-------------
Q 016239          119 FGFSRILNTSWHLTSP-LRFSRINPLVGV-FYDHDRGHCDLASGFACNLPKFIVVGGVRFIG---GL-------------  180 (392)
Q Consensus       119 ~~ynp~~~~~W~~~~~-~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~---~~-------------  180 (392)
                      ++|||. +++|+.+++ +|.++..+++++ .                 +++||++||.....   .+             
T Consensus       109 ~~YD~~-~n~W~~~~~~~p~~~~~~~~~~~~-----------------~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~  170 (376)
T PRK14131        109 YKYDPK-TNSWQKLDTRSPVGLAGHVAVSLH-----------------NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK  170 (376)
T ss_pred             EEEeCC-CCEEEeCCCCCCCcccceEEEEee-----------------CCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence            689999 799999986 466666677666 6                 89999999974210   00             


Q ss_pred             ------------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cE--EEEE
Q 016239          181 ------------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FS--VSSF  240 (392)
Q Consensus       181 ------------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~--i~~y  240 (392)
                                  .......++++||+.+++|+.++++|...+.+     ++++.++++||++||..      ..  .+.|
T Consensus       171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~-----~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~  245 (376)
T PRK14131        171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG-----SAVVIKGNKLWLINGEIKPGLRTDAVKQGKF  245 (376)
T ss_pred             hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc-----ceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence                        00001357999999999999999988643555     78888999999999953      12  3456


Q ss_pred             ECCCCceeecccCCCCcc-------cceeEEeeCCeEEEEEeecCCCC---------------C-ceeEEEeecCccceE
Q 016239          241 DLKKHVWSEVQTLRPPGV-------MFSFLIASPNMLVLAGMCNAPRG---------------P-SFNLWKVDELSMEFS  297 (392)
Q Consensus       241 d~~~~~W~~i~~~~~~~~-------~~~~~~~~~g~l~v~gg~~~~~~---------------~-~~~v~~~d~~~~~W~  297 (392)
                      |+++++|+.++.++..+.       ..+..++.+++||++||......               . ...+.+||+++++|+
T Consensus       246 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~  325 (376)
T PRK14131        246 TGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ  325 (376)
T ss_pred             cCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence            889999999988765331       12224678999999998643210               0 123456799999999


Q ss_pred             ecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe-ecCCCc
Q 016239          298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI-GTESDK  355 (392)
Q Consensus       298 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~-d~~~~~  355 (392)
                      .+..||..+             ..+++++.+++|||+||..........+.. .++.++
T Consensus       326 ~~~~lp~~r-------------~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~  371 (376)
T PRK14131        326 KVGELPQGL-------------AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKK  371 (376)
T ss_pred             ccCcCCCCc-------------cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCE
Confidence            999999874             467889999999999996544334444444 655555

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=3.7e-30  Score=241.28  Aligned_cols=255  Identities=17%  Similarity=0.152  Sum_probs=187.3

Q ss_pred             eeeCCCCCCCCCcceEEeecceEEeecCc-----ceEecCC-cCceeecCCCC-cCccCceEEEEEcCCCCcccccCCcc
Q 016239           90 WFHLPPAQEPRAGSCFIGANGFFFTTTPR-----FGFSRIL-NTSWHLTSPLR-FSRINPLVGVFYDHDRGHCDLASGFA  162 (392)
Q Consensus        90 W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-----~~ynp~~-~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~  162 (392)
                      +..+++||.++...++++.++.||+.||.     ++||+.. +++|..++++| .+|..++++++               
T Consensus        19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~---------------   83 (376)
T PRK14131         19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI---------------   83 (376)
T ss_pred             cccCCCCCcCccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE---------------
Confidence            45788999998878888889999999884     7888752 37899999997 48988888899               


Q ss_pred             cCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-CCCCCCCCCccceeeEE-ECCEEEEEeecc------
Q 016239          163 CNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-PADFRSGYSSQYLSSAL-FRGRFYVFGIYS------  234 (392)
Q Consensus       163 ~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~------  234 (392)
                        +++||++||..............++++||+.+++|+.++++ |.. +.+     ++++. .+++||++||..      
T Consensus        84 --~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~-----~~~~~~~~~~IYv~GG~~~~~~~~  155 (376)
T PRK14131         84 --DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAG-----HVAVSLHNGKAYITGGVNKNIFDG  155 (376)
T ss_pred             --CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc-ccc-----eEEEEeeCCEEEEECCCCHHHHHH
Confidence              99999999974210000012345899999999999999853 443 433     55555 899999999953      


Q ss_pred             ---------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCC
Q 016239          235 ---------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRG  281 (392)
Q Consensus       235 ---------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~  281 (392)
                                                       +.+++||+.+++|+.+++++..++..++++.++++||++||......
T Consensus       156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~  235 (376)
T PRK14131        156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL  235 (376)
T ss_pred             HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc
Confidence                                             46999999999999998877645566677888999999998654333


Q ss_pred             CceeE--EEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC----------------CC
Q 016239          282 PSFNL--WKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK----------------YP  343 (392)
Q Consensus       282 ~~~~v--~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~----------------~~  343 (392)
                      ...++  +.||+++++|+.+..||..+...     .+.++..+.+++.+++|||+||.....                ..
T Consensus       236 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~-----~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  310 (376)
T PRK14131        236 RTDAVKQGKFTGNNLKWQKLPDLPPAPGGS-----SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKK  310 (376)
T ss_pred             CChhheEEEecCCCcceeecCCCCCCCcCC-----cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcc
Confidence            34444  45678899999999998753100     000122344678999999999964311                01


Q ss_pred             eEEEEe-ecCCCccceeeeecCCCCCcccccceE
Q 016239          344 ACVCEI-GTESDKCRCSWRRLPQLPSPVNEFHKV  376 (392)
Q Consensus       344 ~~~~~~-d~~~~~~~~~W~~~~~~p~~~~~~~~~  376 (392)
                      ...+|+ |+++++    |+.+++||.++..++++
T Consensus       311 ~~~~e~yd~~~~~----W~~~~~lp~~r~~~~av  340 (376)
T PRK14131        311 SWSDEIYALVNGK----WQKVGELPQGLAYGVSV  340 (376)
T ss_pred             eeehheEEecCCc----ccccCcCCCCccceEEE
Confidence            123455 999999    99999999998776554

>PLN02193 nitrile-specifier protein

Probab=99.97  E-value=6.9e-30  Score=245.42  Aligned_cols=264  Identities=16%  Similarity=0.233  Sum_probs=192.8

Q ss_pred             hhhhhhhcCcc-hhhHhhhccCCCCCCEEEEEcccCC-CC-CCCceeeeeCCCCceeeCCCC---CC-CCCcceEEeecc
Q 016239           38 KSWRSIISAPS-FSALIAHNTNASPRPWFFLFGLHNT-SS-RNNQSFAFDPASNSWFHLPPA---QE-PRAGSCFIGANG  110 (392)
Q Consensus        38 k~W~~l~~~~~-f~~~~~~~~~~~~~~~l~~~gg~~~-~~-~~~~~~~yd~~~~~W~~~~~~---~~-~r~~~~~~~~~g  110 (392)
                      .+|..+..... ...|..| .++..+..||++||... .. ..+++++||+.+++|..++.+   |. .|..+++++.++
T Consensus       151 ~~W~~~~~~~~~P~pR~~h-~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~  229 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSH-GIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS  229 (470)
T ss_pred             ceEEEcccCCCCCCCcccc-EEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence            57987765321 2234434 44456789999999743 22 336799999999999987643   33 245678888999


Q ss_pred             eEEeecCc---------ceEecCCcCceeecCCC---CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecC
Q 016239          111 FFFTTTPR---------FGFSRILNTSWHLTSPL---RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIG  178 (392)
Q Consensus       111 ~i~v~gg~---------~~ynp~~~~~W~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~  178 (392)
                      .||++||.         ++||+. +++|++++++   |.+|..|++++.                 +++||++||.+.  
T Consensus       230 ~lYvfGG~~~~~~~ndv~~yD~~-t~~W~~l~~~~~~P~~R~~h~~~~~-----------------~~~iYv~GG~~~--  289 (470)
T PLN02193        230 TLYVFGGRDASRQYNGFYSFDTT-TNEWKLLTPVEEGPTPRSFHSMAAD-----------------EENVYVFGGVSA--  289 (470)
T ss_pred             EEEEECCCCCCCCCccEEEEECC-CCEEEEcCcCCCCCCCccceEEEEE-----------------CCEEEEECCCCC--
Confidence            99999983         799999 7999999888   789999999998                 999999999732  


Q ss_pred             cccccccceEEEEEeCCCCCeecCCC---CCCCCCCCCCccceeeEEECCEEEEEeecc----cEEEEEECCCCceeecc
Q 016239          179 GLVDIEDRLAVEIYDPHSDSWELCPP---LPADFRSGYSSQYLSSALFRGRFYVFGIYS----FSVSSFDLKKHVWSEVQ  251 (392)
Q Consensus       179 ~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~i~~yd~~~~~W~~i~  251 (392)
                          .....++++||+.+++|+.++.   ++.+ |..     ++++++++++|++||..    +.+++||+.+++|+.++
T Consensus       290 ----~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-R~~-----~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~  359 (470)
T PLN02193        290 ----TARLKTLDSYNIVDKKWFHCSTPGDSFSI-RGG-----AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE  359 (470)
T ss_pred             ----CCCcceEEEEECCCCEEEeCCCCCCCCCC-CCC-----cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence                1234579999999999998864   3443 554     78888999999999965    57999999999999997


Q ss_pred             cC--CCCcccceeEEeeCCeEEEEEeecCCC--------CCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccce
Q 016239          252 TL--RPPGVMFSFLIASPNMLVLAGMCNAPR--------GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFAS  321 (392)
Q Consensus       252 ~~--~~~~~~~~~~~~~~g~l~v~gg~~~~~--------~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~  321 (392)
                      .+  .|..+..+.++.++++|||+||.....        ....++|.||+.+++|+++..++...       +.+.+|..
T Consensus       360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~-------~~P~~R~~  432 (470)
T PLN02193        360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEE-------ETPSSRGW  432 (470)
T ss_pred             cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCC-------CCCCCCcc
Confidence            64  233445566788899999999864311        12357999999999999998765320       11222333


Q ss_pred             eE--E-EEeC-CEEEEEecccc
Q 016239          322 LK--C-VGLG-NLIYVFNEEYH  339 (392)
Q Consensus       322 ~~--~-~~~~-~~i~v~gg~~~  339 (392)
                      ++  + ...+ +.|+++||...
T Consensus       433 ~~~~~~~~~~~~~~~~fGG~~~  454 (470)
T PLN02193        433 TASTTGTIDGKKGLVMHGGKAP  454 (470)
T ss_pred             ccceeeEEcCCceEEEEcCCCC
Confidence            32  2 2333 45999999643

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=3e-30  Score=253.80  Aligned_cols=238  Identities=20%  Similarity=0.266  Sum_probs=192.6

Q ss_pred             hccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCC-CCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceE
Q 016239           34 SSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSS-RNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFF  112 (392)
Q Consensus        34 ~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i  112 (392)
                      ....++|..+...|.  ..  ...++..++.+|++||..... ...+++.||+.+++|..+++|+.+|..+++++.+|.|
T Consensus       270 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~l  345 (534)
T PHA03098        270 YSPLSEINTIIDIHY--VY--CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRI  345 (534)
T ss_pred             chhhhhcccccCccc--cc--cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEE
Confidence            334456666554332  11  123455688999999986543 4468999999999999999999999999999999999


Q ss_pred             EeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc
Q 016239          113 FTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI  183 (392)
Q Consensus       113 ~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~  183 (392)
                      |++||.         ++|||. +++|+.++++|.+|..++++++                 +++||++||....     .
T Consensus       346 yv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~lp~~r~~~~~~~~-----------------~~~iYv~GG~~~~-----~  402 (534)
T PHA03098        346 YVIGGIYNSISLNTVESWKPG-ESKWREEPPLIFPRYNPCVVNV-----------------NNLIYVIGGISKN-----D  402 (534)
T ss_pred             EEEeCCCCCEecceEEEEcCC-CCceeeCCCcCcCCccceEEEE-----------------CCEEEEECCcCCC-----C
Confidence            999983         799999 7999999999999999999999                 9999999996321     1


Q ss_pred             ccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc--------cEEEEEECCCCceeecccCCC
Q 016239          184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS--------FSVSSFDLKKHVWSEVQTLRP  255 (392)
Q Consensus       184 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--------~~i~~yd~~~~~W~~i~~~~~  255 (392)
                      ....++++||+.+++|+.++++|.+ |.+     ++++..+++||++||..        ..+++||+.+++|+.++.++.
T Consensus       403 ~~~~~v~~yd~~t~~W~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~  476 (534)
T PHA03098        403 ELLKTVECFSLNTNKWSKGSPLPIS-HYG-----GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF  476 (534)
T ss_pred             cccceEEEEeCCCCeeeecCCCCcc-ccC-----ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc
Confidence            2356899999999999999999887 665     78889999999999964        248999999999999987766


Q ss_pred             CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHH
Q 016239          256 PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDF  306 (392)
Q Consensus       256 ~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~  306 (392)
                      ++ ..+.++..+++||++||...... ...+++||+.+++|+.++.+|...
T Consensus       477 ~r-~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~~  525 (534)
T PHA03098        477 PR-INASLCIFNNKIYVVGGDKYEYY-INEIEVYDDKTNTWTLFCKFPKVI  525 (534)
T ss_pred             cc-ccceEEEECCEEEEEcCCcCCcc-cceeEEEeCCCCEEEecCCCcccc
Confidence            44 44556778999999998654332 457889999999999999988753

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=244.03  Aligned_cols=198  Identities=17%  Similarity=0.131  Sum_probs=167.0

Q ss_pred             EEeecceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239          105 FIGANGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVR  175 (392)
Q Consensus       105 ~~~~~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~  175 (392)
                      ++..++.||++||.         +.|||. +++|..+++|+.+|..++++++                 +++||++||.+
T Consensus       267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~m~~~r~~~~~v~~-----------------~~~iYviGG~~  328 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPPMNSPRLYASGVPA-----------------NNKLYVVGGLP  328 (480)
T ss_pred             eEEECCEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCCCCchhhcceEEEE-----------------CCEEEEECCcC
Confidence            44579999999983         789999 7999999999999999999999                 99999999973


Q ss_pred             ecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc---cEEEEEECCCCceeeccc
Q 016239          176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS---FSVSSFDLKKHVWSEVQT  252 (392)
Q Consensus       176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~i~~yd~~~~~W~~i~~  252 (392)
                               ...+++.||+.+++|+.+++||.+ |..     ++++.++|+||++||..   ..+.+||+.+++|+.+++
T Consensus       329 ---------~~~sve~ydp~~n~W~~~~~l~~~-r~~-----~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~  393 (480)
T PHA02790        329 ---------NPTSVERWFHGDAAWVNMPSLLKP-RCN-----PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS  393 (480)
T ss_pred             ---------CCCceEEEECCCCeEEECCCCCCC-Ccc-----cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence                     124699999999999999999987 766     78899999999999965   468899999999999988


Q ss_pred             CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEE
Q 016239          253 LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIY  332 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  332 (392)
                      ++.++.. +.+++++|+||++||.       .  .+||+.+++|+.+++||..             |..+++++++|+||
T Consensus       394 m~~~r~~-~~~~~~~~~IYv~GG~-------~--e~ydp~~~~W~~~~~m~~~-------------r~~~~~~v~~~~IY  450 (480)
T PHA02790        394 TYYPHYK-SCALVFGRRLFLVGRN-------A--EFYCESSNTWTLIDDPIYP-------------RDNPELIIVDNKLL  450 (480)
T ss_pred             CCCcccc-ceEEEECCEEEEECCc-------e--EEecCCCCcEeEcCCCCCC-------------ccccEEEEECCEEE
Confidence            8775544 5567899999999972       3  3569999999999999877             45889999999999


Q ss_pred             EEeccccCCCCeEEEEe-ecCCCccceeeeec
Q 016239          333 VFNEEYHKKYPACVCEI-GTESDKCRCSWRRL  363 (392)
Q Consensus       333 v~gg~~~~~~~~~~~~~-d~~~~~~~~~W~~~  363 (392)
                      ++||.... .....+|. |+++|+    |+..
T Consensus       451 viGG~~~~-~~~~~ve~Yd~~~~~----W~~~  477 (480)
T PHA02790        451 LIGGFYRG-SYIDTIEVYNNRTYS----WNIW  477 (480)
T ss_pred             EECCcCCC-cccceEEEEECCCCe----EEec
Confidence            99995432 22345666 999999    9875

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.96  E-value=3.4e-28  Score=202.62  Aligned_cols=244  Identities=16%  Similarity=0.261  Sum_probs=192.2

Q ss_pred             hccCCCCCCEEEEEcccCC-----CCCCCceeeeeCCCCceeeCCC-------------CCCCCCcceEEeecceEEeec
Q 016239           55 HNTNASPRPWFFLFGLHNT-----SSRNNQSFAFDPASNSWFHLPP-------------AQEPRAGSCFIGANGFFFTTT  116 (392)
Q Consensus        55 ~~~~~~~~~~l~~~gg~~~-----~~~~~~~~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~g~i~v~g  116 (392)
                      .++++..+..+|.+||+=.     ...--++.+++..+-+|.++++             .|-.|.+|+++..++.+|+.|
T Consensus        16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG   95 (392)
T KOG4693|consen   16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG   95 (392)
T ss_pred             cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence            3466778999999999632     1233568899999999998865             123478899999999999999


Q ss_pred             Cc----------ceEecCCcCceeec---CCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc
Q 016239          117 PR----------FGFSRILNTSWHLT---SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI  183 (392)
Q Consensus       117 g~----------~~ynp~~~~~W~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~  183 (392)
                      |.          +.|||. +++|++.   ..+|.+|..|+++++                 ++.+|++||+...    ..
T Consensus        96 GRND~egaCN~Ly~fDp~-t~~W~~p~v~G~vPgaRDGHsAcV~-----------------gn~MyiFGGye~~----a~  153 (392)
T KOG4693|consen   96 GRNDDEGACNLLYEFDPE-TNVWKKPEVEGFVPGARDGHSACVW-----------------GNQMYIFGGYEED----AQ  153 (392)
T ss_pred             CccCcccccceeeeeccc-cccccccceeeecCCccCCceeeEE-----------------CcEEEEecChHHH----HH
Confidence            84          799999 7999864   457889999999999                 9999999998321    11


Q ss_pred             ccceEEEEEeCCCCCeecCCCC--CCCCCCCCCccceeeEEECCEEEEEeecc--------------cEEEEEECCCCce
Q 016239          184 EDRLAVEIYDPHSDSWELCPPL--PADFRSGYSSQYLSSALFRGRFYVFGIYS--------------FSVSSFDLKKHVW  247 (392)
Q Consensus       184 ~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--------------~~i~~yd~~~~~W  247 (392)
                      .-..++.++|..|.+|+.+...  |..+|.     +|+++++++++|+|||..              +.|..+|+.++.|
T Consensus       154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD-----FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW  228 (392)
T KOG4693|consen  154 RFSQDTHVLDFATMTWREMHTKGDPPRWRD-----FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAW  228 (392)
T ss_pred             hhhccceeEeccceeeeehhccCCCchhhh-----hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccc
Confidence            2245799999999999998643  333454     589999999999999975              3899999999999


Q ss_pred             eeccc--CCCCcccceeEEeeCCeEEEEEeecCCC-CCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccce
Q 016239          248 SEVQT--LRPPGVMFSFLIASPNMLVLAGMCNAPR-GPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFAS  321 (392)
Q Consensus       248 ~~i~~--~~~~~~~~~~~~~~~g~l~v~gg~~~~~-~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~  321 (392)
                      ...+.  +.|.++..+.+.+.+++||++||+...- ..-.++|.+|+.+..|+.+..   -|..             |..
T Consensus       229 ~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-------------RRR  295 (392)
T KOG4693|consen  229 TRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-------------RRR  295 (392)
T ss_pred             ccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-------------ccc
Confidence            98754  3345566677799999999999976542 224789999999999998865   3443             457


Q ss_pred             eEEEEeCCEEEEEeccc
Q 016239          322 LKCVGLGNLIYVFNEEY  338 (392)
Q Consensus       322 ~~~~~~~~~i~v~gg~~  338 (392)
                      ..+++.|+++|+|||+.
T Consensus       296 qC~~v~g~kv~LFGGTs  312 (392)
T KOG4693|consen  296 QCSVVSGGKVYLFGGTS  312 (392)
T ss_pred             eeEEEECCEEEEecCCC
Confidence            77889999999999954

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.96  E-value=9.9e-28  Score=220.90  Aligned_cols=212  Identities=13%  Similarity=0.118  Sum_probs=165.2

Q ss_pred             hhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCce----eeCCCCCCCCCcceEEeecceEEe
Q 016239           39 SWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSW----FHLPPAQEPRAGSCFIGANGFFFT  114 (392)
Q Consensus        39 ~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~g~i~v  114 (392)
                      +|..+...|.....   +..+..+..||++||.+....+.+++.||+.+++|    ..++++|.+|..+++++.++.||+
T Consensus        52 ~W~~~~~lp~~r~~---~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv  128 (323)
T TIGR03548        52 KWVKDGQLPYEAAY---GASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYV  128 (323)
T ss_pred             eEEEcccCCccccc---eEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEE
Confidence            68887766653222   23445588999999987766778899999999998    778999999999999999999999


Q ss_pred             ecCc---------ceEecCCcCceeecCCCCc-CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccc
Q 016239          115 TTPR---------FGFSRILNTSWHLTSPLRF-SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIE  184 (392)
Q Consensus       115 ~gg~---------~~ynp~~~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~  184 (392)
                      +||.         ++|||. +++|+.+++++. +|..++++++                 +++||++||.+       ..
T Consensus       129 ~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~r~~~~~~~~-----------------~~~iYv~GG~~-------~~  183 (323)
T TIGR03548       129 GGGNRNGKPSNKSYLFNLE-TQEWFELPDFPGEPRVQPVCVKL-----------------QNELYVFGGGS-------NI  183 (323)
T ss_pred             EeCcCCCccCceEEEEcCC-CCCeeECCCCCCCCCCcceEEEE-----------------CCEEEEEcCCC-------Cc
Confidence            9983         799999 799999999874 7888888888                 99999999973       12


Q ss_pred             cceEEEEEeCCCCCeecCCCCCCC--CCCCCCccceeeEEECCEEEEEeecc----------------------------
Q 016239          185 DRLAVEIYDPHSDSWELCPPLPAD--FRSGYSSQYLSSALFRGRFYVFGIYS----------------------------  234 (392)
Q Consensus       185 ~~~~~~~yd~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~g~ly~~gg~~----------------------------  234 (392)
                      ...++++||+.+++|+.+++++..  .+..  ...++++..+++||++||..                            
T Consensus       184 ~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (323)
T TIGR03548       184 AYTDGYKYSPKKNQWQKVADPTTDSEPISL--LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL  261 (323)
T ss_pred             cccceEEEecCCCeeEECCCCCCCCCceec--cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence            234689999999999999876421  0110  01233445579999999965                            


Q ss_pred             ---------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCC
Q 016239          235 ---------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPR  280 (392)
Q Consensus       235 ---------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~  280 (392)
                               +.+++||+.+++|+.++.++...+..+.++.++++||++||.....
T Consensus       262 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       262 KPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             CCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence                     4699999999999999877644455566789999999999865543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.95  E-value=5.5e-26  Score=189.44  Aligned_cols=236  Identities=18%  Similarity=0.277  Sum_probs=183.2

Q ss_pred             CCCcceEEeecceEEeecCc--------------ceEecCCcCceeecCC-------------CCcCccCceEEEEEcCC
Q 016239           99 PRAGSCFIGANGFFFTTTPR--------------FGFSRILNTSWHLTSP-------------LRFSRINPLVGVFYDHD  151 (392)
Q Consensus        99 ~r~~~~~~~~~g~i~v~gg~--------------~~ynp~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~~  151 (392)
                      .|.+|++++.+..||-+||.              .++|.. +-+|.++|+             .|..|+.|+++.+    
T Consensus        13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~-~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y----   87 (392)
T KOG4693|consen   13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE-NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY----   87 (392)
T ss_pred             ccccceeeeecceEEecCCcccccccccCCcceeEEeecc-ceeEEecCcccccccccCCCCccchhhcCceEEEE----
Confidence            46788889999999999983              577777 679998875             3567999999999    


Q ss_pred             CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC---CCCCCCCCCCCccceeeEEECCEEE
Q 016239          152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP---PLPADFRSGYSSQYLSSALFRGRFY  228 (392)
Q Consensus       152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~g~ly  228 (392)
                                   ++++|+.||.+-     +....+..+.||+++++|....   .+|.. |.+     |++++.++.+|
T Consensus        88 -------------~d~~yvWGGRND-----~egaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDG-----HsAcV~gn~My  143 (392)
T KOG4693|consen   88 -------------QDKAYVWGGRND-----DEGACNLLYEFDPETNVWKKPEVEGFVPGA-RDG-----HSACVWGNQMY  143 (392)
T ss_pred             -------------cceEEEEcCccC-----cccccceeeeeccccccccccceeeecCCc-cCC-----ceeeEECcEEE
Confidence                         999999999852     2345678999999999998764   45665 888     99999999999


Q ss_pred             EEeecc-------cEEEEEECCCCceeeccc--CCCCcccceeEEeeCCeEEEEEeecCCCCC--------ceeEEEeec
Q 016239          229 VFGIYS-------FSVSSFDLKKHVWSEVQT--LRPPGVMFSFLIASPNMLVLAGMCNAPRGP--------SFNLWKVDE  291 (392)
Q Consensus       229 ~~gg~~-------~~i~~yd~~~~~W~~i~~--~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~--------~~~v~~~d~  291 (392)
                      +|||+.       .++.++|+.+.+|+.+..  .|+..+.+++.+++++.+|++||......+        ...|-.+|.
T Consensus       144 iFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~  223 (392)
T KOG4693|consen  144 IFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL  223 (392)
T ss_pred             EecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec
Confidence            999975       589999999999999855  345566778888899999999986544321        245667799


Q ss_pred             CccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCC---eEEEEeecCCCccceeeeec---CC
Q 016239          292 LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYP---ACVCEIGTESDKCRCSWRRL---PQ  365 (392)
Q Consensus       292 ~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~---~~~~~~d~~~~~~~~~W~~~---~~  365 (392)
                      .+..|..-+.-+..          +.+|..++..+.+++||+||| |.+.-.   ...+.+||.+..    |..+   ++
T Consensus       224 ~T~aW~r~p~~~~~----------P~GRRSHS~fvYng~~Y~FGG-Yng~ln~HfndLy~FdP~t~~----W~~I~~~Gk  288 (392)
T KOG4693|consen  224 ATGAWTRTPENTMK----------PGGRRSHSTFVYNGKMYMFGG-YNGTLNVHFNDLYCFDPKTSM----WSVISVRGK  288 (392)
T ss_pred             cccccccCCCCCcC----------CCcccccceEEEcceEEEecc-cchhhhhhhcceeecccccch----heeeeccCC
Confidence            99999987543222          224679999999999999999 333211   223344999999    9988   46


Q ss_pred             CCCcccccceEEE
Q 016239          366 LPSPVNEFHKVIS  378 (392)
Q Consensus       366 ~p~~~~~~~~~~~  378 (392)
                      -|.++++++|+++
T Consensus       289 ~P~aRRRqC~~v~  301 (392)
T KOG4693|consen  289 YPSARRRQCSVVS  301 (392)
T ss_pred             CCCcccceeEEEE
Confidence            7888888866543

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.87  E-value=3.1e-20  Score=178.32  Aligned_cols=238  Identities=16%  Similarity=0.195  Sum_probs=183.1

Q ss_pred             CCCCCCCCcceEEeecceEEeecCc-----------ceEecCCcCceeecC---CCCcCccCceEEEEEcCCCCcccccC
Q 016239           94 PPAQEPRAGSCFIGANGFFFTTTPR-----------FGFSRILNTSWHLTS---PLRFSRINPLVGVFYDHDRGHCDLAS  159 (392)
Q Consensus        94 ~~~~~~r~~~~~~~~~g~i~v~gg~-----------~~ynp~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~  159 (392)
                      ...|.+|..|+++..++.+||+||.           +++|.. +..|....   ..|.+|..|.++.+            
T Consensus        55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~-~~~w~~~~~~g~~p~~r~g~~~~~~------------  121 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLE-SQLWTKPAATGDEPSPRYGHSLSAV------------  121 (482)
T ss_pred             CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecC-CcccccccccCCCCCcccceeEEEE------------
Confidence            4467789999999889999999983           788887 68887653   45678999999999            


Q ss_pred             CcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC---CCCCCCCCCCCccceeeEEECCEEEEEeecc--
Q 016239          160 GFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP---PLPADFRSGYSSQYLSSALFRGRFYVFGIYS--  234 (392)
Q Consensus       160 ~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--  234 (392)
                           +.+||++||.+.     ......+++.||..+++|+.+.   ..|.+ |.+     |+++.++.+||+|||..  
T Consensus       122 -----~~~l~lfGG~~~-----~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~-r~~-----Hs~~~~g~~l~vfGG~~~~  185 (482)
T KOG0379|consen  122 -----GDKLYLFGGTDK-----KYRNLNELHSLDLSTRTWSLLSPTGDPPPP-RAG-----HSATVVGTKLVVFGGIGGT  185 (482)
T ss_pred             -----CCeEEEEccccC-----CCCChhheEeccCCCCcEEEecCcCCCCCC-ccc-----ceEEEECCEEEEECCccCc
Confidence                 999999999853     1234668999999999999886   33554 666     99999999999999875  


Q ss_pred             ----cEEEEEECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHH
Q 016239          235 ----FSVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLY  308 (392)
Q Consensus       235 ----~~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~  308 (392)
                          +++++||+.+.+|.++...  .|.++..+++++.+++++|+||.........++|.||..+.+|+++......   
T Consensus       186 ~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~---  262 (482)
T KOG0379|consen  186 GDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL---  262 (482)
T ss_pred             ccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC---
Confidence                5899999999999998553  4456778889999999999987664444568999999999999966543221   


Q ss_pred             hhcCCcccCccceeEEEEeCCEEEEEeccccCC--CCeEEEEeecCCCccceeeeecCCCC----Ccccccc
Q 016239          309 SLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK--YPACVCEIGTESDKCRCSWRRLPQLP----SPVNEFH  374 (392)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~--~~~~~~~~d~~~~~~~~~W~~~~~~p----~~~~~~~  374 (392)
                             +.+|+.|..+..++.++++||.....  .....+-+|.+++.    |..+....    .++..+.
T Consensus       263 -------p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~----w~~~~~~~~~~~~~~~~~~  323 (482)
T KOG0379|consen  263 -------PSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLV----WSKVESVGVVRPSPRLGHA  323 (482)
T ss_pred             -------CCCcceeeeEEECCEEEEEcCCcccccccccccccccccccc----eeeeecccccccccccccc
Confidence                   22366888889999999999965431  22333444777777    99986554    4444443

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=1.7e-20  Score=169.72  Aligned_cols=267  Identities=15%  Similarity=0.211  Sum_probs=185.4

Q ss_pred             hhhhhhcC--cchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeC---CCCCCCCCcceEEeecceEE
Q 016239           39 SWRSIISA--PSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHL---PPAQEPRAGSCFIGANGFFF  113 (392)
Q Consensus        39 ~W~~l~~~--~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g~i~  113 (392)
                      +|+.+..+  |....+|.| +++....++.+|||-++ ...++++.|+..+|+|..-   ..+|.+...|+++..+.+||
T Consensus        18 rWrrV~~~tGPvPrpRHGH-RAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril   95 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGH-RAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL   95 (830)
T ss_pred             ceEEEecccCCCCCccccc-hheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence            58777665  455567766 55667888999988765 3568899999999999642   46777777888888899999


Q ss_pred             eecCc--------ceEecCCcC--ceeecC-------CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceee
Q 016239          114 TTTPR--------FGFSRILNT--SWHLTS-------PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRF  176 (392)
Q Consensus       114 v~gg~--------~~ynp~~~~--~W~~~~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~  176 (392)
                      ++||.        ..|... ..  +|+++.       ++|.+|..|+..++                 ++|.|+|||...
T Consensus        96 vFGGMvEYGkYsNdLYELQ-asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~-----------------gnKcYlFGGLaN  157 (830)
T KOG4152|consen   96 VFGGMVEYGKYSNDLYELQ-ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV-----------------GNKCYLFGGLAN  157 (830)
T ss_pred             EEccEeeeccccchHHHhh-hhhhhHhhcCCCCCCCCCCCCCccCceeEEe-----------------ccEeEEeccccc
Confidence            99995        234443 22  566663       35778999999999                 999999999754


Q ss_pred             cCccccc---ccceEEEEEeCCCC----CeecC---CCCCCCCCCCCCccceeeEEE------CCEEEEEeecc----cE
Q 016239          177 IGGLVDI---EDRLAVEIYDPHSD----SWELC---PPLPADFRSGYSSQYLSSALF------RGRFYVFGIYS----FS  236 (392)
Q Consensus       177 ~~~~~~~---~~~~~~~~yd~~~~----~W~~~---~~~~~~~~~~~~~~~~~~~~~------~g~ly~~gg~~----~~  236 (392)
                      .......   ..+++.++.+...+    .|...   ..+|.+ |.+     |.++.+      ..++|++||.+    ++
T Consensus       158 dseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p-RES-----HTAViY~eKDs~~skmvvyGGM~G~RLgD  231 (830)
T KOG4152|consen  158 DSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP-RES-----HTAVIYTEKDSKKSKMVVYGGMSGCRLGD  231 (830)
T ss_pred             cccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC-ccc-----ceeEEEEeccCCcceEEEEcccccccccc
Confidence            3322111   13456666665533    48755   356666 666     777776      34799999987    58


Q ss_pred             EEEEECCCCceeeccc--CCCCcccceeEEeeCCeEEEEEeecCC-------------CCCceeEEEeecCccceEeccc
Q 016239          237 VSSFDLKKHVWSEVQT--LRPPGVMFSFLIASPNMLVLAGMCNAP-------------RGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       237 i~~yd~~~~~W~~i~~--~~~~~~~~~~~~~~~g~l~v~gg~~~~-------------~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      +|..|+++..|.+...  .++..+..+..+.+++++|++||.--.             ......+=.++.+++.|+.+-.
T Consensus       232 LW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~  311 (830)
T KOG4152|consen  232 LWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLM  311 (830)
T ss_pred             eeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeee
Confidence            9999999999998633  333345566668999999999984211             0011222233777888986532


Q ss_pred             CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239          302 MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE  337 (392)
Q Consensus       302 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~  337 (392)
                      -..      -++.-+++|..|.++++|.++||..|+
T Consensus       312 d~~------ed~tiPR~RAGHCAvAigtRlYiWSGR  341 (830)
T KOG4152|consen  312 DTL------EDNTIPRARAGHCAVAIGTRLYIWSGR  341 (830)
T ss_pred             ccc------cccccccccccceeEEeccEEEEEecc
Confidence            111      122234568899999999999999985

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=164.98  Aligned_cols=233  Identities=13%  Similarity=0.205  Sum_probs=167.6

Q ss_pred             CCCCCCCCcceEEee--cceEEeecC-------------cceEecCCcCceeec--CCCCcCccCceEEEEEcCCCCccc
Q 016239           94 PPAQEPRAGSCFIGA--NGFFFTTTP-------------RFGFSRILNTSWHLT--SPLRFSRINPLVGVFYDHDRGHCD  156 (392)
Q Consensus        94 ~~~~~~r~~~~~~~~--~g~i~v~gg-------------~~~ynp~~~~~W~~~--~~~~~~r~~~~~~~~~~~~~~~~~  156 (392)
                      -++|.||.++++.+.  .+-|+++||             .|.||.. +++|+++  |+.|.||+.|.++++.        
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k-~~eWkk~~spn~P~pRsshq~va~~--------  131 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTK-KNEWKKVVSPNAPPPRSSHQAVAVP--------  131 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecc-ccceeEeccCCCcCCCccceeEEec--------
Confidence            356778888877765  445666666             3889998 7999976  6678899999999883        


Q ss_pred             ccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEECCEEEEEeecc
Q 016239          157 LASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALFRGRFYVFGIYS  234 (392)
Q Consensus       157 ~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~  234 (392)
                              .+.+|++||.-............+.|.||..+++|+.+.  .-|.+ |.+     |.+++....|++|||+.
T Consensus       132 --------s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~-RSG-----HRMvawK~~lilFGGFh  197 (521)
T KOG1230|consen  132 --------SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP-RSG-----HRMVAWKRQLILFGGFH  197 (521)
T ss_pred             --------cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC-Ccc-----ceeEEeeeeEEEEccee
Confidence                    579999999643222111122347999999999999986  45666 887     99999999999999985


Q ss_pred             ---------cEEEEEECCCCceeecccCC--C-CcccceeEEeeCCeEEEEEeecCCC--------CCceeEEEeecCc-
Q 016239          235 ---------FSVSSFDLKKHVWSEVQTLR--P-PGVMFSFLIASPNMLVLAGMCNAPR--------GPSFNLWKVDELS-  293 (392)
Q Consensus       235 ---------~~i~~yd~~~~~W~~i~~~~--~-~~~~~~~~~~~~g~l~v~gg~~~~~--------~~~~~v~~~d~~~-  293 (392)
                               ++|++||+.+-+|+.+.+..  | ++.+++..+.-+|.|||.||+....        ..-.++|.|++.. 
T Consensus       198 d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~  277 (521)
T KOG1230|consen  198 DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG  277 (521)
T ss_pred             cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence                     58999999999999996643  3 4555555455599999999975432        1246899998877 


Q ss_pred             ----cceEecccCCHHHHHhhcCCcccCccceeEEEEe-CCEEEEEeccccCCCC---------eEEEEeecCCCcccee
Q 016239          294 ----MEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFNEEYHKKYP---------ACVCEIGTESDKCRCS  359 (392)
Q Consensus       294 ----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~gg~~~~~~~---------~~~~~~d~~~~~~~~~  359 (392)
                          -.|.++......          +.+|+.++|++. +++-++|||-++....         ...|-+|...++    
T Consensus       278 ~~dKw~W~kvkp~g~k----------PspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nr----  343 (521)
T KOG1230|consen  278 REDKWVWTKVKPSGVK----------PSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNR----  343 (521)
T ss_pred             CCcceeEeeccCCCCC----------CCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccch----
Confidence                678887653222          113678888755 5599999996652111         111223778888    


Q ss_pred             eeec
Q 016239          360 WRRL  363 (392)
Q Consensus       360 W~~~  363 (392)
                      |...
T Consensus       344 W~~~  347 (521)
T KOG1230|consen  344 WSEG  347 (521)
T ss_pred             hhHh
Confidence            9765

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.85  E-value=2.4e-19  Score=172.21  Aligned_cols=218  Identities=21%  Similarity=0.300  Sum_probs=176.6

Q ss_pred             cCCCCCCEEEEEcccCCCCCCCc--eeeeeCCCCceeeC---CCCCCCCCcceEEeecceEEeecCc----------ceE
Q 016239           57 TNASPRPWFFLFGLHNTSSRNNQ--SFAFDPASNSWFHL---PPAQEPRAGSCFIGANGFFFTTTPR----------FGF  121 (392)
Q Consensus        57 ~~~~~~~~l~~~gg~~~~~~~~~--~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g~i~v~gg~----------~~y  121 (392)
                      +++..+..++++||.........  ++.+|..+..|...   ...|.+|.++.++..+..||++||.          +.|
T Consensus        65 s~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~  144 (482)
T KOG0379|consen   65 SAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSL  144 (482)
T ss_pred             ceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEec
Confidence            45555899999999876555444  99999999999765   3456789999999999999999984          689


Q ss_pred             ecCCcCceeecC---CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC
Q 016239          122 SRILNTSWHLTS---PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS  198 (392)
Q Consensus       122 np~~~~~W~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~  198 (392)
                      |+. +++|..+.   .+|.+|..|+++++                 +.++||+||....+     ...+++++||..+.+
T Consensus       145 d~~-t~~W~~l~~~~~~P~~r~~Hs~~~~-----------------g~~l~vfGG~~~~~-----~~~ndl~i~d~~~~~  201 (482)
T KOG0379|consen  145 DLS-TRTWSLLSPTGDPPPPRAGHSATVV-----------------GTKLVVFGGIGGTG-----DSLNDLHIYDLETST  201 (482)
T ss_pred             cCC-CCcEEEecCcCCCCCCcccceEEEE-----------------CCEEEEECCccCcc-----cceeeeeeecccccc
Confidence            999 79998764   46889999999999                 99999999984322     246799999999999


Q ss_pred             eecCC---CCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccC--CCCcccceeEEeeC
Q 016239          199 WELCP---PLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASP  267 (392)
Q Consensus       199 W~~~~---~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~  267 (392)
                      |.++.   ..|.+ |.+     |+++.++++++++||..      ++++.+|+.+.+|..+...  .+.++..+.++..+
T Consensus       202 W~~~~~~g~~P~p-R~g-----H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~  275 (482)
T KOG0379|consen  202 WSELDTQGEAPSP-RYG-----HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSG  275 (482)
T ss_pred             ceecccCCCCCCC-CCC-----ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEEC
Confidence            99885   44555 777     99999999999998876      4899999999999976543  23455566667889


Q ss_pred             CeEEEEEeecCCCC-CceeEEEeecCccceEecccCC
Q 016239          268 NMLVLAGMCNAPRG-PSFNLWKVDELSMEFSEIAIMP  303 (392)
Q Consensus       268 g~l~v~gg~~~~~~-~~~~v~~~d~~~~~W~~~~~~p  303 (392)
                      .+++++||...... ...++|.||..+..|.++....
T Consensus       276 ~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  276 DHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             CEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence            99999998665422 4678899999999999998877

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.82  E-value=7e-19  Score=155.58  Aligned_cols=258  Identities=19%  Similarity=0.242  Sum_probs=180.2

Q ss_pred             cccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC--CC--CCCCceeeee
Q 016239            9 AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN--TS--SRNNQSFAFD   84 (392)
Q Consensus         9 ~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~--~~--~~~~~~~~yd   84 (392)
                      +-++|-++.|.+|+..|..+......-      .....|+. +.+....+-+...-|+++||.-  +.  ...++++.||
T Consensus        32 l~~e~de~~i~~~iq~~eaK~~e~~~e------~~~~~Psp-Rsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn  104 (521)
T KOG1230|consen   32 LNEELDEADIAEIIQSLEAKQIEHVVE------TSVPPPSP-RSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYN  104 (521)
T ss_pred             cCcccchHHHHHHHHhhhhhccceeee------ccCCCCCC-CCCcceeeccCcceeEEecceeecceeEEEeeeeeEEe
Confidence            345566777888888887776421110      00011221 1111111223344677778742  21  2467899999


Q ss_pred             CCCCceeeC--CCCCCCCCcceEEee-cceEEeecCc---------------ceEecCCcCceeec--CCCCcCccCceE
Q 016239           85 PASNSWFHL--PPAQEPRAGSCFIGA-NGFFFTTTPR---------------FGFSRILNTSWHLT--SPLRFSRINPLV  144 (392)
Q Consensus        85 ~~~~~W~~~--~~~~~~r~~~~~~~~-~g~i~v~gg~---------------~~ynp~~~~~W~~~--~~~~~~r~~~~~  144 (392)
                      .+.+.|..+  +..|.||+.|.+++. .|.++++||.               |.++.. +++|.++  +.-|.+|+.|-+
T Consensus       105 ~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~-trkweql~~~g~PS~RSGHRM  183 (521)
T KOG1230|consen  105 TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK-TRKWEQLEFGGGPSPRSGHRM  183 (521)
T ss_pred             ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec-cchheeeccCCCCCCCcccee
Confidence            999999987  567788999876666 6899999982               899999 7999987  456889999999


Q ss_pred             EEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC---CCCCCCCCCCccceeeE
Q 016239          145 GVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP---LPADFRSGYSSQYLSSA  221 (392)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~  221 (392)
                      ++.                 ..+++++||....  ..+....+++++||..+-+|+.+.+   -|.+ |.+     +...
T Consensus       184 vaw-----------------K~~lilFGGFhd~--nr~y~YyNDvy~FdLdtykW~Klepsga~Ptp-RSG-----cq~~  238 (521)
T KOG1230|consen  184 VAW-----------------KRQLILFGGFHDS--NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTP-RSG-----CQFS  238 (521)
T ss_pred             EEe-----------------eeeEEEEcceecC--CCceEEeeeeEEEeccceeeeeccCCCCCCCC-CCc-----ceEE
Confidence            999                 9999999997533  2234456799999999999999874   2444 766     5555


Q ss_pred             EE-CCEEEEEeeccc--------------EEEEEECCC-----Cceeeccc--CCC-CcccceeEEeeCCeEEEEEeecC
Q 016239          222 LF-RGRFYVFGIYSF--------------SVSSFDLKK-----HVWSEVQT--LRP-PGVMFSFLIASPNMLVLAGMCNA  278 (392)
Q Consensus       222 ~~-~g~ly~~gg~~~--------------~i~~yd~~~-----~~W~~i~~--~~~-~~~~~~~~~~~~g~l~v~gg~~~  278 (392)
                      +. +|.||+.||++.              +++..++.+     =+|..+.+  ++| ++.++...+.-+++-+.+||...
T Consensus       239 vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D  318 (521)
T KOG1230|consen  239 VTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCD  318 (521)
T ss_pred             ecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceec
Confidence            55 999999999872              678888877     25666644  233 56666666666889999998654


Q ss_pred             CCC--------CceeEEEeecCccceEec
Q 016239          279 PRG--------PSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       279 ~~~--------~~~~v~~~d~~~~~W~~~  299 (392)
                      ...        --.++|-||.+.++|.+.
T Consensus       319 ~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  319 LEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ccccchhhhhhhhhhhhheecccchhhHh
Confidence            211        136788889999999865

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.74  E-value=7.6e-17  Score=146.26  Aligned_cols=244  Identities=18%  Similarity=0.326  Sum_probs=159.7

Q ss_pred             CCceeeC----CCCCCCCCcceEEeecceEEeecCc--------ceEecCCcCceeec---CCCCcCccCceEEEEEcCC
Q 016239           87 SNSWFHL----PPAQEPRAGSCFIGANGFFFTTTPR--------FGFSRILNTSWHLT---SPLRFSRINPLVGVFYDHD  151 (392)
Q Consensus        87 ~~~W~~~----~~~~~~r~~~~~~~~~g~i~v~gg~--------~~ynp~~~~~W~~~---~~~~~~r~~~~~~~~~~~~  151 (392)
                      .-+|+.+    .+.|.||++|-+++...+|.++||-        .+||.. +++|..-   .+.|.+..           
T Consensus        16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa-tnqWf~PavrGDiPpgcA-----------   83 (830)
T KOG4152|consen   16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA-TNQWFAPAVRGDIPPGCA-----------   83 (830)
T ss_pred             ccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc-cceeecchhcCCCCCchh-----------
Confidence            3457665    4677889999999999999999872        799999 7999732   23333322           


Q ss_pred             CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCe--ecCC-------CCCCCCCCCCCccceeeEE
Q 016239          152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSW--ELCP-------PLPADFRSGYSSQYLSSAL  222 (392)
Q Consensus       152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W--~~~~-------~~~~~~~~~~~~~~~~~~~  222 (392)
                            .|||.|++.+||+|||.-+.+.+       +-+.|......|  +.+.       +.|.+ |.+     |+-+.
T Consensus        84 ------A~GfvcdGtrilvFGGMvEYGkY-------sNdLYELQasRWeWkrlkp~~p~nG~pPCP-RlG-----HSFsl  144 (830)
T KOG4152|consen   84 ------AFGFVCDGTRILVFGGMVEYGKY-------SNDLYELQASRWEWKRLKPKTPKNGPPPCP-RLG-----HSFSL  144 (830)
T ss_pred             ------hcceEecCceEEEEccEeeeccc-------cchHHHhhhhhhhHhhcCCCCCCCCCCCCC-ccC-----ceeEE
Confidence                  34666669999999998544332       455666666554  5553       23344 777     89999


Q ss_pred             ECCEEEEEeeccc--------------EEEEEECCCC----ceeecc---cCCCCcccceeEEee------CCeEEEEEe
Q 016239          223 FRGRFYVFGIYSF--------------SVSSFDLKKH----VWSEVQ---TLRPPGVMFSFLIAS------PNMLVLAGM  275 (392)
Q Consensus       223 ~~g~ly~~gg~~~--------------~i~~yd~~~~----~W~~i~---~~~~~~~~~~~~~~~------~g~l~v~gg  275 (392)
                      ++++.|+|||..+              +++..++.-+    .|....   ..|+++..+.+ +.+      ..+++++||
T Consensus       145 ~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTA-ViY~eKDs~~skmvvyGG  223 (830)
T KOG4152|consen  145 VGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTA-VIYTEKDSKKSKMVVYGG  223 (830)
T ss_pred             eccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccccee-EEEEeccCCcceEEEEcc
Confidence            9999999999752              5666665433    466532   23344444444 444      347899998


Q ss_pred             ecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccc-----cC--CCC-----
Q 016239          276 CNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEY-----HK--KYP-----  343 (392)
Q Consensus       276 ~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~-----~~--~~~-----  343 (392)
                      ..+.  .-.++|.+|.++.+|.+...-..          .+-+|+-|++..+||++|||||=.     +.  ...     
T Consensus       224 M~G~--RLgDLW~Ldl~Tl~W~kp~~~G~----------~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWk  291 (830)
T KOG4152|consen  224 MSGC--RLGDLWTLDLDTLTWNKPSLSGV----------APLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWK  291 (830)
T ss_pred             cccc--cccceeEEecceeecccccccCC----------CCCCcccccceeecceeEEecceeeeeccccccccccceee
Confidence            6543  25789999999999997543100          111356789999999999999910     00  000     


Q ss_pred             -eEEEEe-ecCCCccceeeeecC-------CCCCcccccceEEE
Q 016239          344 -ACVCEI-GTESDKCRCSWRRLP-------QLPSPVNEFHKVIS  378 (392)
Q Consensus       344 -~~~~~~-d~~~~~~~~~W~~~~-------~~p~~~~~~~~~~~  378 (392)
                       ...+-+ ++.++.    |..+-       ..|.+|.+|+++.+
T Consensus       292 CTssl~clNldt~~----W~tl~~d~~ed~tiPR~RAGHCAvAi  331 (830)
T KOG4152|consen  292 CTSSLACLNLDTMA----WETLLMDTLEDNTIPRARAGHCAVAI  331 (830)
T ss_pred             eccceeeeeecchh----eeeeeeccccccccccccccceeEEe
Confidence             111234 667777    87662       36777778866654

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.64  E-value=9e-14  Score=121.77  Aligned_cols=200  Identities=17%  Similarity=0.159  Sum_probs=129.7

Q ss_pred             eecceEEeec--CcceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCccc--CCCeEEEEeceeecCcccc
Q 016239          107 GANGFFFTTT--PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFAC--NLPKFIVVGGVRFIGGLVD  182 (392)
Q Consensus       107 ~~~g~i~v~g--g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~  182 (392)
                      .++|+||+..  ...++||. |++|+.+|+.+.++.......          .++||+.  +.+|+..+....      .
T Consensus         3 sCnGLlc~~~~~~~~V~NP~-T~~~~~LP~~~~~~~~~~~~~----------~~~G~d~~~~~YKVv~~~~~~------~   65 (230)
T TIGR01640         3 PCDGLICFSYGKRLVVWNPS-TGQSRWLPTPKSRRSNKESDT----------YFLGYDPIEKQYKVLCFSDRS------G   65 (230)
T ss_pred             ccceEEEEecCCcEEEECCC-CCCEEecCCCCCcccccccce----------EEEeecccCCcEEEEEEEeec------C
Confidence            5689998874  45899999 799999987654322111101          1234433  377888876531      0


Q ss_pred             cccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc-----EEEEEECCCCceee-cccCCCC
Q 016239          183 IEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF-----SVSSFDLKKHVWSE-VQTLRPP  256 (392)
Q Consensus       183 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~-----~i~~yd~~~~~W~~-i~~~~~~  256 (392)
                      ......+++|++.+++|+.+...+......     ..++.++|.||++.....     .|.+||+.+++|++ ++.+...
T Consensus        66 ~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~-----~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~  140 (230)
T TIGR01640        66 NRNQSEHQVYTLGSNSWRTIECSPPHHPLK-----SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGN  140 (230)
T ss_pred             CCCCccEEEEEeCCCCccccccCCCCcccc-----CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccc
Confidence            112347999999999999997433321111     237889999999975332     79999999999995 6544322


Q ss_pred             c--ccceeEEeeCCeEEEEEeecCCCCCceeEEEee-cCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEE
Q 016239          257 G--VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD-ELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYV  333 (392)
Q Consensus       257 ~--~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d-~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  333 (392)
                      .  .....+++++|+|.++.....  ...++||+++ ....+|+++-.++......+..      .....++..+++|++
T Consensus       141 ~~~~~~~~L~~~~G~L~~v~~~~~--~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~------~~~~~~~~~~g~I~~  212 (230)
T TIGR01640       141 SDSVDYLSLINYKGKLAVLKQKKD--TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVD------DNFLSGFTDKGEIVL  212 (230)
T ss_pred             cccccceEEEEECCEEEEEEecCC--CCcEEEEEECCCCCCceeEEEEEcCcchhhhhh------heeEeEEeeCCEEEE
Confidence            1  224567888999998876432  1259999995 5466799877765321111111      123567788899999


Q ss_pred             Eec
Q 016239          334 FNE  336 (392)
Q Consensus       334 ~gg  336 (392)
                      ...
T Consensus       213 ~~~  215 (230)
T TIGR01640       213 CCE  215 (230)
T ss_pred             EeC
Confidence            875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.59  E-value=1.1e-13  Score=121.19  Aligned_cols=245  Identities=16%  Similarity=0.161  Sum_probs=165.2

Q ss_pred             eCCCCCCCCCcceEEeecceEEeecC---c--ceEecCC-cCceeecCCCCc-CccCceEEEEEcCCCCcccccCCcccC
Q 016239           92 HLPPAQEPRAGSCFIGANGFFFTTTP---R--FGFSRIL-NTSWHLTSPLRF-SRINPLVGVFYDHDRGHCDLASGFACN  164 (392)
Q Consensus        92 ~~~~~~~~r~~~~~~~~~g~i~v~gg---~--~~ynp~~-~~~W~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~  164 (392)
                      .+|.+|.+-.+-+-+..++.+||.=|   .  +..|... ...|+.+...|- +|.....+++                 
T Consensus        29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~-----------------   91 (381)
T COG3055          29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI-----------------   91 (381)
T ss_pred             cCCCCCccccccccceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheee-----------------
Confidence            45677776544444445778888644   2  5555431 359999998875 6777778888                 


Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-CCCCCCCCCccceeeEEECC-EEEEEeecc--------
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-PADFRSGYSSQYLSSALFRG-RFYVFGIYS--------  234 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~--------  234 (392)
                      +++||++||...... ......++++.||+.+++|+.+... |.. ..+     +.++..++ ++|++||..        
T Consensus        92 ~~kLyvFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g-l~G-----~~~~~~~~~~i~f~GGvn~~if~~yf  164 (381)
T COG3055          92 GGKLYVFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTRSPTG-LVG-----ASTFSLNGTKIYFFGGVNQNIFNGYF  164 (381)
T ss_pred             CCeEEEeeccccCCC-CCceEeeeeEEecCCCChhheeccccccc-ccc-----ceeEecCCceEEEEccccHHhhhhhH
Confidence            999999999854433 2234456899999999999998743 333 333     67777777 999999974        


Q ss_pred             -------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239          235 -------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS  283 (392)
Q Consensus       235 -------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~  283 (392)
                                                     ..++.||+.+++|+.....|......++++.-+++|.++.|.-..+..+
T Consensus       165 ~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt  244 (381)
T COG3055         165 EDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRT  244 (381)
T ss_pred             HhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccc
Confidence                                           1789999999999999877765555566555677798888766666667


Q ss_pred             eeEEEeec--CccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC-------------------CC
Q 016239          284 FNLWKVDE--LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK-------------------KY  342 (392)
Q Consensus       284 ~~v~~~d~--~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~-------------------~~  342 (392)
                      ..+++++.  ...+|..+..+|......-      -+....-.--.++.+.+.||....                   ..
T Consensus       245 ~~~k~~~~~~~~~~w~~l~~lp~~~~~~~------eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w  318 (381)
T COG3055         245 AEVKQADFGGDNLKWLKLSDLPAPIGSNK------EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSW  318 (381)
T ss_pred             cceeEEEeccCceeeeeccCCCCCCCCCc------cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhh
Confidence            77777754  4567999988876643110      111122222466777777773221                   12


Q ss_pred             CeEEEEeecCCCccceeeeecCCCCCcccc
Q 016239          343 PACVCEIGTESDKCRCSWRRLPQLPSPVNE  372 (392)
Q Consensus       343 ~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~  372 (392)
                      ...++-+|  .+.    |+.+..||+++..
T Consensus       319 ~~~Vy~~d--~g~----Wk~~GeLp~~l~Y  342 (381)
T COG3055         319 NSEVYIFD--NGS----WKIVGELPQGLAY  342 (381)
T ss_pred             hceEEEEc--CCc----eeeecccCCCccc
Confidence            23333334  666    9999999996554

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.57  E-value=2.5e-13  Score=119.05  Aligned_cols=256  Identities=14%  Similarity=0.121  Sum_probs=169.1

Q ss_pred             hhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCC--CCceeeCCCCCC-CCCcceEEeecceEEeecCc-
Q 016239           43 IISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPA--SNSWFHLPPAQE-PRAGSCFIGANGFFFTTTPR-  118 (392)
Q Consensus        43 l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~--~~~W~~~~~~~~-~r~~~~~~~~~g~i~v~gg~-  118 (392)
                      ++..|.+.+-   ......+..+|+.-|..+    ..++..|.+  ...|.++...|. +|.....+++++.||++||. 
T Consensus        30 lPdlPvg~Kn---G~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~G  102 (381)
T COG3055          30 LPDLPVGFKN---GAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYG  102 (381)
T ss_pred             CCCCCccccc---cccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccc
Confidence            3444554443   344455667887666443    345666655  356999988775 57777778889999999983 


Q ss_pred             -------------ceEecCCcCceeecCCC-CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecC------
Q 016239          119 -------------FGFSRILNTSWHLTSPL-RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIG------  178 (392)
Q Consensus       119 -------------~~ynp~~~~~W~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~------  178 (392)
                                   ++|||. +++|+++... |..-..+.++...                +.+||++||.+..-      
T Consensus       103 k~~~~~~~~~nd~Y~y~p~-~nsW~kl~t~sP~gl~G~~~~~~~----------------~~~i~f~GGvn~~if~~yf~  165 (381)
T COG3055         103 KSVSSSPQVFNDAYRYDPS-TNSWHKLDTRSPTGLVGASTFSLN----------------GTKIYFFGGVNQNIFNGYFE  165 (381)
T ss_pred             cCCCCCceEeeeeEEecCC-CChhheeccccccccccceeEecC----------------CceEEEEccccHHhhhhhHH
Confidence                         899999 8999988653 4555555565651                44999999975410      


Q ss_pred             ------cc----------------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc--
Q 016239          179 ------GL----------------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS--  234 (392)
Q Consensus       179 ------~~----------------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--  234 (392)
                            ..                .+......+..|++.+++|+.....|.-.+++     ++.+.-++++.++.|.-  
T Consensus       166 dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG-----sa~~~~~n~~~lInGEiKp  240 (381)
T COG3055         166 DVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG-----SAVVIKGNKLTLINGEIKP  240 (381)
T ss_pred             hhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC-----cceeecCCeEEEEcceecC
Confidence                  00                01112346889999999999998776644554     34444466677776643  


Q ss_pred             ----cEEEEEEC--CCCceeecccCCCCc------ccceeEEeeCCeEEEEEeecCCC---------------C---Cce
Q 016239          235 ----FSVSSFDL--KKHVWSEVQTLRPPG------VMFSFLIASPNMLVLAGMCNAPR---------------G---PSF  284 (392)
Q Consensus       235 ----~~i~~yd~--~~~~W~~i~~~~~~~------~~~~~~~~~~g~l~v~gg~~~~~---------------~---~~~  284 (392)
                          ..+..+|.  ...+|..+...|++.      ...+..-..++.+.+.||.....               .   -..
T Consensus       241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~  320 (381)
T COG3055         241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS  320 (381)
T ss_pred             CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence                24555555  466999987765521      11222234577888888743211               1   136


Q ss_pred             eEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCC
Q 016239          285 NLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKY  342 (392)
Q Consensus       285 ~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~  342 (392)
                      +||.+|  .+.|+.+..||..+.             ....+..++.||++||+..+..
T Consensus       321 ~Vy~~d--~g~Wk~~GeLp~~l~-------------YG~s~~~nn~vl~IGGE~~~Gk  363 (381)
T COG3055         321 EVYIFD--NGSWKIVGELPQGLA-------------YGVSLSYNNKVLLIGGETSGGK  363 (381)
T ss_pred             eEEEEc--CCceeeecccCCCcc-------------ceEEEecCCcEEEEccccCCCe
Confidence            788878  789999999999742             5566688999999999876553

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.25  E-value=1.4e-09  Score=99.09  Aligned_cols=124  Identities=13%  Similarity=0.125  Sum_probs=79.1

Q ss_pred             CCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCC----C--CcccceeEEeeCCe
Q 016239          196 SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLR----P--PGVMFSFLIASPNM  269 (392)
Q Consensus       196 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~----~--~~~~~~~~~~~~g~  269 (392)
                      .+.|+.+.....  ++      ...+.++|++|++.. .+.++.+|..-+ -+++.+..    .  .......+|+..|+
T Consensus       189 ~~~Wt~l~~~~~--~~------~DIi~~kGkfYAvD~-~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd  258 (373)
T PLN03215        189 GNVLKALKQMGY--HF------SDIIVHKGQTYALDS-IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE  258 (373)
T ss_pred             CCeeeEccCCCc--ee------eEEEEECCEEEEEcC-CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence            489999975333  32      678999999999954 367888885321 12222111    1  11233558899999


Q ss_pred             EEEEEeecCC-------------CCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEE------EeCCE
Q 016239          270 LVLAGMCNAP-------------RGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCV------GLGNL  330 (392)
Q Consensus       270 l~v~gg~~~~-------------~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~  330 (392)
                      |++|......             ....++||++|.+..+|.++.++....+  |.+...     .+++.      ..+|.
T Consensus       259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aL--FlG~~~-----s~sv~a~e~pG~k~Nc  331 (373)
T PLN03215        259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAF--VMATDT-----CFSVLAHEFYGCLPNS  331 (373)
T ss_pred             EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEE--EEECCc-----cEEEecCCCCCccCCE
Confidence            9999864211             1125889999999999999999987643  554431     12221      34688


Q ss_pred             EEEEec
Q 016239          331 IYVFNE  336 (392)
Q Consensus       331 i~v~gg  336 (392)
                      ||+...
T Consensus       332 IYFtdd  337 (373)
T PLN03215        332 IYFTED  337 (373)
T ss_pred             EEEECC
Confidence            888864

>PF13964 Kelch_6: Kelch motif

Probab=98.90  E-value=4e-09  Score=68.13  Aligned_cols=49  Identities=33%  Similarity=0.482  Sum_probs=41.8

Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCC
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPAD  208 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  208 (392)
                      +|..++++++                 +++||++||....     .....++++||+++++|+.+++||.+
T Consensus         1 pR~~~s~v~~-----------------~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    1 PRYGHSAVVV-----------------GGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             CCccCEEEEE-----------------CCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCCCCCC
Confidence            5788999999                 9999999998421     34567899999999999999999876

>PF13964 Kelch_6: Kelch motif

Probab=98.77  E-value=1.8e-08  Score=64.97  Aligned_cols=48  Identities=31%  Similarity=0.539  Sum_probs=38.3

Q ss_pred             cceeEEEEeCCEEEEEecccc-CCCCeEEEEeecCCCccceeeeecCCCCCcc
Q 016239          319 FASLKCVGLGNLIYVFNEEYH-KKYPACVCEIGTESDKCRCSWRRLPQLPSPV  370 (392)
Q Consensus       319 ~~~~~~~~~~~~i~v~gg~~~-~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~  370 (392)
                      |.++++++.+++|||+||... ......+..+|+++++    |+.+++||.+|
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT----WEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc----EEECCCCCCCC
Confidence            568999999999999999765 2333333444999999    99999999875

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.77  E-value=4.1e-09  Score=96.48  Aligned_cols=304  Identities=14%  Similarity=0.113  Sum_probs=176.7

Q ss_pred             cHHHHHHHHhhCChh---hHHHhhccchhhhhhhcCc----ch---hhHhhhccCCC--CCCEEEEEcccCCCCCCCcee
Q 016239           14 STDITERILSLLPIP---TLIRASSVCKSWRSIISAP----SF---SALIAHNTNAS--PRPWFFLFGLHNTSSRNNQSF   81 (392)
Q Consensus        14 p~dl~~~iL~rLP~~---~l~~~~~v~k~W~~l~~~~----~f---~~~~~~~~~~~--~~~~l~~~gg~~~~~~~~~~~   81 (392)
                      -++-.|+|+..+...   ..+.-...--.|..++...    .|   ..+++.+..+.  ...-+|++||.++...+.++|
T Consensus       212 gd~~~e~i~~~~~~~lf~q~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW  291 (723)
T KOG2437|consen  212 GDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFW  291 (723)
T ss_pred             ccHHHHHHHhhhccHHHhhhhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHH
Confidence            344445555555333   2333334446787776544    11   22222233332  344799999999999999999


Q ss_pred             eeeCCCCceeeC---CCCCCCCCcceEEee--cceEEeecC---------------cceEecCCcCceeecC------CC
Q 016239           82 AFDPASNSWFHL---PPAQEPRAGSCFIGA--NGFFFTTTP---------------RFGFSRILNTSWHLTS------PL  135 (392)
Q Consensus        82 ~yd~~~~~W~~~---~~~~~~r~~~~~~~~--~g~i~v~gg---------------~~~ynp~~~~~W~~~~------~~  135 (392)
                      +|+...+.|..+   +..|..|..|-++..  ..++|+.|.               .|+||.. ++.|..+.      .-
T Consensus       292 ~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~-~~~W~~ls~dt~~dGG  370 (723)
T KOG2437|consen  292 AYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID-TNTWMLLSEDTAADGG  370 (723)
T ss_pred             hhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC-CceeEEecccccccCC
Confidence            999999999876   347788988877765  448999985               2899999 79998663      23


Q ss_pred             CcCccCceEEEEEcCCCCcccccCCcccCCCe--EEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC---CC-C
Q 016239          136 RFSRINPLVGVFYDHDRGHCDLASGFACNLPK--FIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP---AD-F  209 (392)
Q Consensus       136 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~-~  209 (392)
                      |..-++|.+++.                 +.|  +||+||.....   +...-...+.||.....|.....--   .+ .
T Consensus       371 P~~vfDHqM~Vd-----------------~~k~~iyVfGGr~~~~---~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vv  430 (723)
T KOG2437|consen  371 PKLVFDHQMCVD-----------------SEKHMIYVFGGRILTC---NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVV  430 (723)
T ss_pred             cceeecceeeEe-----------------cCcceEEEecCeeccC---CCccccceEEEecCCccHHHHHHHHhhcCcch
Confidence            455678888888                 666  99999974321   1112346889999999998775211   00 0


Q ss_pred             CCCCCccceeeE--EECCEEEEEeeccc-----EEEEEECCCCceeecccCC-------CCccc--ceeEEeeCCeEEEE
Q 016239          210 RSGYSSQYLSSA--LFRGRFYVFGIYSF-----SVSSFDLKKHVWSEVQTLR-------PPGVM--FSFLIASPNMLVLA  273 (392)
Q Consensus       210 ~~~~~~~~~~~~--~~~g~ly~~gg~~~-----~i~~yd~~~~~W~~i~~~~-------~~~~~--~~~~~~~~g~l~v~  273 (392)
                      ....++-.+.+-  .-+..+|++||...     -.++||...+.=..+..-.       +.+..  .+.+-....+|.+.
T Consensus       431 E~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~  510 (723)
T KOG2437|consen  431 EDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVL  510 (723)
T ss_pred             hHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhh
Confidence            011111113332  23678999999763     2356776655444432211       11111  11112224566554


Q ss_pred             EeecCC-----CCCceeEEEeecCccceEecccCCHHH------HHhhcCCc-----ccCccceeEEE--EeCCEEEEEe
Q 016239          274 GMCNAP-----RGPSFNLWKVDELSMEFSEIAIMPHDF------LYSLVDTE-----EDDKFASLKCV--GLGNLIYVFN  335 (392)
Q Consensus       274 gg~~~~-----~~~~~~v~~~d~~~~~W~~~~~~p~~~------~~~~~~~~-----~~~~~~~~~~~--~~~~~i~v~g  335 (392)
                      -|....     .......|.|+..+++|..+..+...-      +.-.++++     ...+|.+++.+  ..-+-+|.+|
T Consensus       511 ~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~G  590 (723)
T KOG2437|consen  511 SGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFG  590 (723)
T ss_pred             cccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhc
Confidence            443222     123468899999999999887654332      11112211     12334454444  2445677788


Q ss_pred             ccc
Q 016239          336 EEY  338 (392)
Q Consensus       336 g~~  338 (392)
                      |..
T Consensus       591 gn~  593 (723)
T KOG2437|consen  591 GNP  593 (723)
T ss_pred             CCC
Confidence            743

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.75  E-value=1.2e-08  Score=64.83  Aligned_cols=43  Identities=33%  Similarity=0.519  Sum_probs=38.0

Q ss_pred             ccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239           10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus        10 ~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      |..||+|++.+|++.||.+++.++..|||+|+.++.++.+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            6789999999999999999999999999999999988876665

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.70  E-value=2.3e-08  Score=63.62  Aligned_cols=47  Identities=34%  Similarity=0.612  Sum_probs=39.9

Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP  206 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~  206 (392)
                      +|..++++++                 +++||++||...     ......++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~-----------------~~~iyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVV-----------------GNKIYVIGGYDG-----NNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEE-----------------TTEEEEEEEBES-----TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEE-----------------CCEEEEEeeecc-----cCceeeeEEEEeCCCCEEEEcCCCC
Confidence            5788999999                 999999999853     2356779999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.66  E-value=1.1e-08  Score=93.83  Aligned_cols=185  Identities=14%  Similarity=0.126  Sum_probs=120.4

Q ss_pred             cCceeecCCC----------CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCC
Q 016239          126 NTSWHLTSPL----------RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH  195 (392)
Q Consensus       126 ~~~W~~~~~~----------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~  195 (392)
                      +.+|.++++.          |..|..|.++....               ...+|+.||.+..      +...+.|+|+..
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---------------~~CiYLYGGWdG~------~~l~DFW~Y~v~  296 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---------------TECVYLYGGWDGT------QDLADFWAYSVK  296 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCC---------------CcEEEEecCcccc------hhHHHHHhhcCC
Confidence            4578877653          34577888776611               5599999998533      345689999999


Q ss_pred             CCCeecCC---CCCCCCCCCCCccceeeEEEC--CEEEEEeecc-----------cEEEEEECCCCceeecccC-----C
Q 016239          196 SDSWELCP---PLPADFRSGYSSQYLSSALFR--GRFYVFGIYS-----------FSVSSFDLKKHVWSEVQTL-----R  254 (392)
Q Consensus       196 ~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~-----------~~i~~yd~~~~~W~~i~~~-----~  254 (392)
                      .+.|+.+.   ..|.. |.     +|.+|..-  .+||++|-+-           .++|+||..++.|..+..-     .
T Consensus       297 e~~W~~iN~~t~~PG~-Rs-----CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGG  370 (723)
T KOG2437|consen  297 ENQWTCINRDTEGPGA-RS-----CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGG  370 (723)
T ss_pred             cceeEEeecCCCCCcc-hh-----hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCC
Confidence            99999885   24444 43     47777654  4999998653           3799999999999987432     2


Q ss_pred             CCcccceeEEeeCCe--EEEEEeecCCCC--CceeEEEeecCccceEecccCCHHHHHhhcCCcccCcccee--EEEEeC
Q 016239          255 PPGVMFSFLIASPNM--LVLAGMCNAPRG--PSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASL--KCVGLG  328 (392)
Q Consensus       255 ~~~~~~~~~~~~~g~--l~v~gg~~~~~~--~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~  328 (392)
                      |.....+.|++.+++  |||+||......  ..-.+|.||.....|.....--...-..   .+....|-.+  .+...+
T Consensus       371 P~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~v---vE~~~sR~ghcmE~~~~n  447 (723)
T KOG2437|consen  371 PKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPV---VEDIQSRIGHCMEFHSKN  447 (723)
T ss_pred             cceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcc---hhHHHHHHHHHHHhcCCC
Confidence            345566778888777  999998644322  2356888899999998754311100000   0000012222  334567


Q ss_pred             CEEEEEeccccC
Q 016239          329 NLIYVFNEEYHK  340 (392)
Q Consensus       329 ~~i~v~gg~~~~  340 (392)
                      +++|++||....
T Consensus       448 ~~ly~fggq~s~  459 (723)
T KOG2437|consen  448 RCLYVFGGQRSK  459 (723)
T ss_pred             CeEEeccCcccc
Confidence            899999985433

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.59  E-value=1.6e-07  Score=59.75  Aligned_cols=46  Identities=15%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239          258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP  303 (392)
Q Consensus       258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p  303 (392)
                      +..+++++++++||++||..........+++||+.+++|+++++||
T Consensus         2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            3456779999999999998875556789999999999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.50  E-value=3.2e-07  Score=58.78  Aligned_cols=49  Identities=20%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP  206 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~  206 (392)
                      +|..|+++++                 ++|||++||...   ........++++||+++++|+.+++++
T Consensus         1 ~r~~hs~~~~-----------------~~kiyv~GG~~~---~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVL-----------------DGKIYVFGGYGT---DNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEE-----------------CCEEEEECCccc---CCCCcccceeEEEECCCCEEeecCCCC
Confidence            5788999999                 999999999811   112345668999999999999998764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.44  E-value=5.9e-06  Score=65.14  Aligned_cols=86  Identities=20%  Similarity=0.280  Sum_probs=66.0

Q ss_pred             EEECCEEEEEeec----ccEEEEEECCCCceeecccC--CCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe-ecCc
Q 016239          221 ALFRGRFYVFGIY----SFSVSSFDLKKHVWSEVQTL--RPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV-DELS  293 (392)
Q Consensus       221 ~~~~g~ly~~gg~----~~~i~~yd~~~~~W~~i~~~--~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~-d~~~  293 (392)
                      +.+||.+|+++..    ...|.+||+++++|+.+..|  +........++.++|+|.++..........+++|++ |..+
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k   81 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK   81 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence            5789999999775    36899999999999999776  334555667899999999887544332346999999 5667


Q ss_pred             cceEeccc-CCHHH
Q 016239          294 MEFSEIAI-MPHDF  306 (392)
Q Consensus       294 ~~W~~~~~-~p~~~  306 (392)
                      .+|++... +|...
T Consensus        82 ~~Wsk~~~~lp~~~   95 (129)
T PF08268_consen   82 QEWSKKHIVLPPSW   95 (129)
T ss_pred             ceEEEEEEECChHH
Confidence            88998755 56553

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.42  E-value=1.2e-07  Score=60.49  Aligned_cols=44  Identities=34%  Similarity=0.569  Sum_probs=37.7

Q ss_pred             cccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239            9 AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus         9 ~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      +|.+||+|++.+|+.+|+.+++.+++.|||+|+.++.++.+...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~   45 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK   45 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence            47899999999999999999999999999999999998876654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.41  E-value=6.7e-07  Score=57.28  Aligned_cols=46  Identities=13%  Similarity=0.168  Sum_probs=37.5

Q ss_pred             ccceeEEeeCCeEEEEEee--cCCCCCceeEEEeecCccceEecccCC
Q 016239          258 VMFSFLIASPNMLVLAGMC--NAPRGPSFNLWKVDELSMEFSEIAIMP  303 (392)
Q Consensus       258 ~~~~~~~~~~g~l~v~gg~--~~~~~~~~~v~~~d~~~~~W~~~~~~p  303 (392)
                      +..+++++.+++||++||.  ........++|.||+++++|++++.||
T Consensus         2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            4456778999999999998  333344688999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.36  E-value=7.4e-07  Score=57.12  Aligned_cols=48  Identities=21%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP  206 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~  206 (392)
                      +|..|+++.+.                ++++|++||.+..+     ....++++||+.+++|+.++++|
T Consensus         1 pR~~h~~~~~~----------------~~~i~v~GG~~~~~-----~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIG----------------DNSIYVFGGRDSSG-----SPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-----------------TTEEEEE--EEE-T-----EE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEe----------------CCeEEEECCCCCCC-----cccCCEEEEECCCCEEEECCCCC
Confidence            57888888872                58999999986432     35668999999999999998776

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.33  E-value=1.4e-06  Score=55.79  Aligned_cols=46  Identities=24%  Similarity=0.456  Sum_probs=40.6

Q ss_pred             CCEEEEEcccC--CCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEe
Q 016239           62 RPWFFLFGLHN--TSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIG  107 (392)
Q Consensus        62 ~~~l~~~gg~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  107 (392)
                      ++.+|++||.+  ....+++++.||+.+++|++++.+|.+|.+|+++.
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            35799999988  55678999999999999999999999999998765

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.31  E-value=5.6e-07  Score=55.24  Aligned_cols=39  Identities=41%  Similarity=0.657  Sum_probs=36.4

Q ss_pred             CcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhh
Q 016239           13 LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSA   51 (392)
Q Consensus        13 Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~   51 (392)
                      ||+|++.+|+++|+.+++.+++.|||+|+.++..+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999998887654

>smart00612 Kelch Kelch domain

Probab=98.30  E-value=1.4e-06  Score=55.15  Aligned_cols=46  Identities=28%  Similarity=0.564  Sum_probs=39.9

Q ss_pred             EEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecc
Q 016239           65 FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG  110 (392)
Q Consensus        65 l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g  110 (392)
                      ||++||.+......++++||+.+++|..+++|+.+|..+++++++|
T Consensus         2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            7899998765567889999999999999999999999998887764

>smart00612 Kelch Kelch domain

Probab=98.29  E-value=1.9e-06  Score=54.57  Aligned_cols=47  Identities=38%  Similarity=0.695  Sum_probs=37.0

Q ss_pred             eEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC
Q 016239          167 KFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG  225 (392)
Q Consensus       167 ~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  225 (392)
                      +||++||...      .....++++||+.+++|+.+++|+.+ |..     ++++.++|
T Consensus         1 ~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~-----~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG------GQRLKSVEVYDPETNKWTPLPSMPTP-RSG-----HGVAVING   47 (47)
T ss_pred             CEEEEeCCCC------CceeeeEEEECCCCCeEccCCCCCCc-ccc-----ceEEEeCC
Confidence            5899999731      23456899999999999999999987 765     67776654

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.25  E-value=1.4e-06  Score=55.81  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             cceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCH
Q 016239          259 MFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPH  304 (392)
Q Consensus       259 ~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~  304 (392)
                      ..++++.. +++|||+||.........++|+||.++++|++++++|.
T Consensus         3 ~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    3 YGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred             ceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence            34555656 69999999987665556799999999999999988874

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.24  E-value=1.8e-06  Score=55.22  Aligned_cols=47  Identities=23%  Similarity=0.421  Sum_probs=37.5

Q ss_pred             CCEEEEEeccc--cCCCCeEEEEeecCCCccceeeeecCCCCCcccccceEEE
Q 016239          328 GNLIYVFNEEY--HKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKVIS  378 (392)
Q Consensus       328 ~~~i~v~gg~~--~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~~~~  378 (392)
                      |++|||+||..  .......++.+|+.+++    |+.++++|.+|..|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT----WTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCE----EEECCCCCCCccceEEEEC
Confidence            68999999976  33344445566999999    9999999999999987753

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.08  E-value=0.00019  Score=62.32  Aligned_cols=155  Identities=15%  Similarity=0.258  Sum_probs=95.7

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc---cEEEEEECCC----Cceeeccc-CCCCccc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS---FSVSSFDLKK----HVWSEVQT-LRPPGVM  259 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~i~~yd~~~----~~W~~i~~-~~~~~~~  259 (392)
                      ..-.||+.+++++.+......+..+      .+..-||++...||..   ..+-.|++.+    ..|.+... |...+..
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSg------g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSG------GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccC------cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence            4567999999999886433332322      2344589999999875   3677888865    68988765 4445554


Q ss_pred             ceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239          260 FSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE  337 (392)
Q Consensus       260 ~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~  337 (392)
                      ......-+|+++|+||....   +.+.|  .....  ....+.-+....     + ......+.+..+.-+++||+++..
T Consensus       121 pT~~~L~DG~vlIvGG~~~~---t~E~~--P~~~~~~~~~~~~~l~~~~-----~-~~~~nlYP~~~llPdG~lFi~an~  189 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNNP---TYEFW--PPKGPGPGPVTLPFLSQTS-----D-TLPNNLYPFVHLLPDGNLFIFANR  189 (243)
T ss_pred             ccceECCCCCEEEEeCcCCC---ccccc--CCccCCCCceeeecchhhh-----c-cCccccCceEEEcCCCCEEEEEcC
Confidence            44555569999999986521   23322  22111  111111111100     0 011125688899999999999962


Q ss_pred             ccCCCCeEEEEeecCCCccceee-eecCCCCCcc
Q 016239          338 YHKKYPACVCEIGTESDKCRCSW-RRLPQLPSPV  370 (392)
Q Consensus       338 ~~~~~~~~~~~~d~~~~~~~~~W-~~~~~~p~~~  370 (392)
                        ..     .-+|+.+++    + +.+|.+|...
T Consensus       190 --~s-----~i~d~~~n~----v~~~lP~lPg~~  212 (243)
T PF07250_consen  190 --GS-----IIYDYKTNT----VVRTLPDLPGGP  212 (243)
T ss_pred             --Cc-----EEEeCCCCe----EEeeCCCCCCCc
Confidence              22     334888887    6 8899999764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.93  E-value=0.00017  Score=62.60  Aligned_cols=146  Identities=15%  Similarity=0.228  Sum_probs=90.7

Q ss_pred             eeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc-------ceEecCC---cCceeecC-CCCcCccCceEEEEE
Q 016239           80 SFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR-------FGFSRIL---NTSWHLTS-PLRFSRINPLVGVFY  148 (392)
Q Consensus        80 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-------~~ynp~~---~~~W~~~~-~~~~~r~~~~~~~~~  148 (392)
                      ...||+.+++++.+......-+.-.+...+|.++++||.       -.|+|..   +..|...+ .|..+|+..++..+.
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457999999998775443332222233348888888874       4678762   25898775 489999999998884


Q ss_pred             cCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC-----CeecCCCCCCCCCCCCCccceeeEEE
Q 016239          149 DHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD-----SWELCPPLPADFRSGYSSQYLSSALF  223 (392)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~  223 (392)
                                      +++++|+||..          ..+.|.+.+...     .|..+......  .......+.-+.-
T Consensus       128 ----------------DG~vlIvGG~~----------~~t~E~~P~~~~~~~~~~~~~l~~~~~~--~~~nlYP~~~llP  179 (243)
T PF07250_consen  128 ----------------DGRVLIVGGSN----------NPTYEFWPPKGPGPGPVTLPFLSQTSDT--LPNNLYPFVHLLP  179 (243)
T ss_pred             ----------------CCCEEEEeCcC----------CCcccccCCccCCCCceeeecchhhhcc--CccccCceEEEcC
Confidence                            88999999973          224555544221     12222211000  0001112444455


Q ss_pred             CCEEEEEeecccEEEEEECCCCce-eecccCCC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVW-SEVQTLRP  255 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W-~~i~~~~~  255 (392)
                      +|+||+++...  -..||..++++ +.++.+|.
T Consensus       180 dG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  180 DGNLFIFANRG--SIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             CCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence            89999999864  45668888876 66777665

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.81  E-value=0.005  Score=53.74  Aligned_cols=163  Identities=14%  Similarity=0.200  Sum_probs=95.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-----EEEEEeec-----ccEEEEEECCCCceeecccCCCCc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-----RFYVFGIY-----SFSVSSFDLKKHVWSEVQTLRPPG  257 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-----~ly~~gg~-----~~~i~~yd~~~~~W~~i~~~~~~~  257 (392)
                      .+.++||.|++|..+++.+.+ +..... ...+..++.     |+..+...     ...+.+|+..+++|+.+...++..
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~-~~~~~~-~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~   92 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSR-RSNKES-DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHH   92 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCc-cccccc-ceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCc
Confidence            688999999999999754432 111000 011222221     44444322     247889999999999987544321


Q ss_pred             ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239          258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE  337 (392)
Q Consensus       258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~  337 (392)
                      .....-+.++|.||-+...... .....|..||..+++|++.-.+|....    .     ......++..+|+|.++...
T Consensus        93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~----~-----~~~~~~L~~~~G~L~~v~~~  162 (230)
T TIGR01640        93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNS----D-----SVDYLSLINYKGKLAVLKQK  162 (230)
T ss_pred             cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccc----c-----cccceEEEEECCEEEEEEec
Confidence            1111246779999887753321 112368889999999996334454321    0     01235677788999998753


Q ss_pred             ccCCCCeEEEEe-ecCCCccceeeeecCCCC
Q 016239          338 YHKKYPACVCEI-GTESDKCRCSWRRLPQLP  367 (392)
Q Consensus       338 ~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~p  367 (392)
                      .. ...+.+... |....+    |+.+=.+|
T Consensus       163 ~~-~~~~~IWvl~d~~~~~----W~k~~~i~  188 (230)
T TIGR01640       163 KD-TNNFDLWVLNDAGKQE----WSKLFTVP  188 (230)
T ss_pred             CC-CCcEEEEEECCCCCCc----eeEEEEEc
Confidence            21 233555555 555555    98765444

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PLN02772 guanylate kinase

Probab=97.78  E-value=0.0002  Score=66.16  Aligned_cols=81  Identities=19%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             cCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC---CCCCCCCCCC
Q 016239          137 FSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP---PLPADFRSGY  213 (392)
Q Consensus       137 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~  213 (392)
                      .++..++++++                 ++++||+||.+.     .+.....+++||..+++|....   ..|.+ |.+ 
T Consensus        23 ~~~~~~tav~i-----------------gdk~yv~GG~~d-----~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~G-   78 (398)
T PLN02772         23 KPKNRETSVTI-----------------GDKTYVIGGNHE-----GNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKG-   78 (398)
T ss_pred             CCCCcceeEEE-----------------CCEEEEEcccCC-----CccccceEEEEECCCCcEecccccCCCCCC-CCc-
Confidence            47778889999                 999999999742     1124568999999999999775   55665 777 


Q ss_pred             CccceeeEEE-CCEEEEEeecc---cEEEEEECCCC
Q 016239          214 SSQYLSSALF-RGRFYVFGIYS---FSVSSFDLKKH  245 (392)
Q Consensus       214 ~~~~~~~~~~-~g~ly~~gg~~---~~i~~yd~~~~  245 (392)
                          |+++.+ +++|+++++..   .++|.....|.
T Consensus        79 ----hSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~  110 (398)
T PLN02772         79 ----YSAVVLNKDRILVIKKGSAPDDSIWFLEVDTP  110 (398)
T ss_pred             ----ceEEEECCceEEEEeCCCCCccceEEEEcCCH
Confidence                788877 68999997543   56777766554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.70  E-value=0.0037  Score=55.61  Aligned_cols=43  Identities=33%  Similarity=0.514  Sum_probs=38.8

Q ss_pred             ccCCc----HHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239           10 FTTLS----TDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus        10 ~~~Lp----~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      ++.||    +++.++||+.|...+|..+..|||+|..+++.+..++.
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk  121 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK  121 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence            45589    99999999999999999999999999999999876654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.54  E-value=0.049  Score=47.47  Aligned_cols=210  Identities=16%  Similarity=0.157  Sum_probs=111.9

Q ss_pred             ceeeeeCCCCc--eeeCCCCCCCCCcce--EEeecceEEeecC---cceEecCCcC--ceeecCCCCcCccCceEEEEEc
Q 016239           79 QSFAFDPASNS--WFHLPPAQEPRAGSC--FIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFSRINPLVGVFYD  149 (392)
Q Consensus        79 ~~~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~r~~~~~~~~~~  149 (392)
                      .+.++|+.+++  |..  .+..+.....  .+..++.+|+..+   .+.+|+. ++  .|+.-.  +.+-... ....  
T Consensus         4 ~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~-tG~~~W~~~~--~~~~~~~-~~~~--   75 (238)
T PF13360_consen    4 TLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK-TGKVLWRFDL--PGPISGA-PVVD--   75 (238)
T ss_dssp             EEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT-TSEEEEEEEC--SSCGGSG-EEEE--
T ss_pred             EEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC-CCCEEEEeec--cccccce-eeec--
Confidence            45677776555  544  1111122222  3336888888743   4889986 45  666433  2211111 3444  


Q ss_pred             CCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eec-CCCCCCC-CCCCCCccceeeEEECC
Q 016239          150 HDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WEL-CPPLPAD-FRSGYSSQYLSSALFRG  225 (392)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~-~~~~~~~-~~~~~~~~~~~~~~~~g  225 (392)
                                     ++.+|+....            ..+..+|..+++  |+. ....+.. ....     ......++
T Consensus        76 ---------------~~~v~v~~~~------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-----~~~~~~~~  123 (238)
T PF13360_consen   76 ---------------GGRVYVGTSD------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSS-----SSPAVDGD  123 (238)
T ss_dssp             ---------------TTEEEEEETT------------SEEEEEETTTSCEEEEEEE-SSCTCSTB-------SEEEEETT
T ss_pred             ---------------ccccccccce------------eeeEecccCCcceeeeeccccccccccccc-----cCceEecC
Confidence                           7888888632            168888876664  883 4322211 1221     33444456


Q ss_pred             EEEEEeecccEEEEEECCCC--ceeecccCCCCcc-------cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc-
Q 016239          226 RFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGV-------MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME-  295 (392)
Q Consensus       226 ~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~-------~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~-  295 (392)
                      .+|+.. ..+.|.++|++++  .|+.-...+....       .....+..++.+|+.....       .+..+|..+.+ 
T Consensus       124 ~~~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~  195 (238)
T PF13360_consen  124 RLYVGT-SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEK  195 (238)
T ss_dssp             EEEEEE-TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEE
T ss_pred             EEEEEe-ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCE
Confidence            665554 3678999998876  5666433332111       1233445577788776432       14455776665 


Q ss_pred             -eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeee
Q 016239          296 -FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWR  361 (392)
Q Consensus       296 -W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~  361 (392)
                       |+. . +...               .......++.||+...  ++    .++-+|+++++  ..|+
T Consensus       196 ~w~~-~-~~~~---------------~~~~~~~~~~l~~~~~--~~----~l~~~d~~tG~--~~W~  237 (238)
T PF13360_consen  196 LWSK-P-ISGI---------------YSLPSVDGGTLYVTSS--DG----RLYALDLKTGK--VVWQ  237 (238)
T ss_dssp             EEEE-C-SS-E---------------CECEECCCTEEEEEET--TT----EEEEEETTTTE--EEEE
T ss_pred             EEEe-c-CCCc---------------cCCceeeCCEEEEEeC--CC----EEEEEECCCCC--EEeE
Confidence             733 2 2221               2225678888888872  11    12344888877  5675

...

>PF13854 Kelch_5: Kelch motif

Probab=97.52  E-value=0.00023  Score=43.64  Aligned_cols=41  Identities=15%  Similarity=0.031  Sum_probs=32.3

Q ss_pred             CCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCC
Q 016239          135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHS  196 (392)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~  196 (392)
                      +|.+|..|+++++                 +++||++||...    ......+++++||..+
T Consensus         1 ~P~~R~~hs~~~~-----------------~~~iyi~GG~~~----~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVV-----------------GNNIYIFGGYSG----NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEE-----------------CCEEEEEcCccC----CCCCEECcEEEEECCC
Confidence            4788999999999                 999999999852    1233456899998765

>PLN02772 guanylate kinase

Probab=97.45  E-value=0.0008  Score=62.25  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=52.9

Q ss_pred             eeeEEECCEEEEEeecc------cEEEEEECCCCceeecc---cCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQ---TLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~---~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      ++++.+++++|++||..      ..+++||..+.+|..-.   ..|.++-++.+++.-+++|+|+++....   .-++|-
T Consensus        28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---~~~~w~  104 (398)
T PLN02772         28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---DDSIWF  104 (398)
T ss_pred             ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---ccceEE
Confidence            78999999999999854      47999999999998854   2333455555555558999999854332   456776


Q ss_pred             eecCc
Q 016239          289 VDELS  293 (392)
Q Consensus       289 ~d~~~  293 (392)
                      +..++
T Consensus       105 l~~~t  109 (398)
T PLN02772        105 LEVDT  109 (398)
T ss_pred             EEcCC
Confidence            65443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00012  Score=64.08  Aligned_cols=49  Identities=29%  Similarity=0.403  Sum_probs=43.4

Q ss_pred             CCCCCcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239            4 HNPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus         4 ~~~~~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      -+|.-.|..|||||++.|++.||.+++++...|||+|..+..+.+.+.+
T Consensus        92 ~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   92 NNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             cCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence            4566679999999999999999999999999999999999988765544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.36  E-value=0.095  Score=49.81  Aligned_cols=191  Identities=13%  Similarity=0.034  Sum_probs=102.8

Q ss_pred             CceeeeeCCCCc--eeeCCCCCC--CCCcceEEeecceEEeecC---cceEecCCcC--ceeecCCCCcC-----c---c
Q 016239           78 NQSFAFDPASNS--WFHLPPAQE--PRAGSCFIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFS-----R---I  140 (392)
Q Consensus        78 ~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~-----r---~  140 (392)
                      ..++++|+++.+  |..-...+.  .+...+-+..++.+|+..+   .+.+|+. ++  .|+.-...+..     |   .
T Consensus       170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~  248 (394)
T PRK11138        170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDV  248 (394)
T ss_pred             CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc-CChhhheeccccCCCccchhccccc
Confidence            457889988776  755322221  1111223344667776543   3567776 44  57642111111     0   1


Q ss_pred             CceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccce
Q 016239          141 NPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYL  218 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~  218 (392)
                      ..+-++.                 ++.+|+.+..            ..+..+|..+++  |+.-.  ...         .
T Consensus       249 ~~sP~v~-----------------~~~vy~~~~~------------g~l~ald~~tG~~~W~~~~--~~~---------~  288 (394)
T PRK11138        249 DTTPVVV-----------------GGVVYALAYN------------GNLVALDLRSGQIVWKREY--GSV---------N  288 (394)
T ss_pred             CCCcEEE-----------------CCEEEEEEcC------------CeEEEEECCCCCEEEeecC--CCc---------c
Confidence            1122334                 7788876532            157788887764  87531  111         2


Q ss_pred             eeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc-
Q 016239          219 SSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME-  295 (392)
Q Consensus       219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~-  295 (392)
                      ..+..++.+|+... .+.++++|..++  .|+.-..  . .......+..+|+||+...       .-.++.+|..+.+ 
T Consensus       289 ~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~--~-~~~~~sp~v~~g~l~v~~~-------~G~l~~ld~~tG~~  357 (394)
T PRK11138        289 DFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDL--L-HRLLTAPVLYNGYLVVGDS-------EGYLHWINREDGRF  357 (394)
T ss_pred             CcEEECCEEEEEcC-CCeEEEEECCCCcEEEccccc--C-CCcccCCEEECCEEEEEeC-------CCEEEEEECCCCCE
Confidence            34667899998764 568999999876  4754211  1 1122233557899887542       2346667776654 


Q ss_pred             -eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239          296 -FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN  335 (392)
Q Consensus       296 -W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g  335 (392)
                       |+.-  ++...             ...+-++.+++|||-.
T Consensus       358 ~~~~~--~~~~~-------------~~s~P~~~~~~l~v~t  383 (394)
T PRK11138        358 VAQQK--VDSSG-------------FLSEPVVADDKLLIQA  383 (394)
T ss_pred             EEEEE--cCCCc-------------ceeCCEEECCEEEEEe
Confidence             5431  11110             1223456788888875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.32  E-value=0.13  Score=48.87  Aligned_cols=226  Identities=13%  Similarity=0.098  Sum_probs=123.5

Q ss_pred             CCCCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCC--------CCCCcceEEeecceEEeecC---cceEecCC
Q 016239           59 ASPRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQ--------EPRAGSCFIGANGFFFTTTP---RFGFSRIL  125 (392)
Q Consensus        59 ~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~--------~~r~~~~~~~~~g~i~v~gg---~~~ynp~~  125 (392)
                      +..++.+|+....      ..+.++|..+++  |+.-..-.        .++...+.+..++.||+.+.   .+.+|.. 
T Consensus        66 vv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~-  138 (394)
T PRK11138         66 AVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAE-  138 (394)
T ss_pred             EEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECC-
Confidence            4456677776432      457889987655  76421110        01112235666889988643   4788987 


Q ss_pred             cC--ceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eec
Q 016239          126 NT--SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WEL  201 (392)
Q Consensus       126 ~~--~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~  201 (392)
                      ++  .|+.-.+  .. ...+-++.                 ++.+|+..+.            ..+..+|.++++  |+.
T Consensus       139 tG~~~W~~~~~--~~-~~ssP~v~-----------------~~~v~v~~~~------------g~l~ald~~tG~~~W~~  186 (394)
T PRK11138        139 DGEVAWQTKVA--GE-ALSRPVVS-----------------DGLVLVHTSN------------GMLQALNESDGAVKWTV  186 (394)
T ss_pred             CCCCcccccCC--Cc-eecCCEEE-----------------CCEEEEECCC------------CEEEEEEccCCCEeeee
Confidence            44  7864322  11 11122344                 7778875432            158888987765  876


Q ss_pred             CCCCCCC-CCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcc-------cceeEEeeCCeEE
Q 016239          202 CPPLPAD-FRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGV-------MFSFLIASPNMLV  271 (392)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~-------~~~~~~~~~g~l~  271 (392)
                      -...+.. .+..     .+.+..++.+|+.. ..+.+.++|..+.  .|+.-...+....       ....-++.++.||
T Consensus       187 ~~~~~~~~~~~~-----~sP~v~~~~v~~~~-~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy  260 (394)
T PRK11138        187 NLDVPSLTLRGE-----SAPATAFGGAIVGG-DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY  260 (394)
T ss_pred             cCCCCcccccCC-----CCCEEECCEEEEEc-CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence            5432211 0111     34556677777654 4578999998876  5764321111000       1122345688888


Q ss_pred             EEEeecCCCCCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe
Q 016239          272 LAGMCNAPRGPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI  349 (392)
Q Consensus       272 v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~  349 (392)
                      +.+.       ...++.+|..+.  .|+.-  ...                ....+..+++||+...  +  ..  ++-+
T Consensus       261 ~~~~-------~g~l~ald~~tG~~~W~~~--~~~----------------~~~~~~~~~~vy~~~~--~--g~--l~al  309 (394)
T PRK11138        261 ALAY-------NGNLVALDLRSGQIVWKRE--YGS----------------VNDFAVDGGRIYLVDQ--N--DR--VYAL  309 (394)
T ss_pred             EEEc-------CCeEEEEECCCCCEEEeec--CCC----------------ccCcEEECCEEEEEcC--C--Ce--EEEE
Confidence            8663       235677787654  48752  110                1134567899999763  1  11  2333


Q ss_pred             ecCCCccceeeee
Q 016239          350 GTESDKCRCSWRR  362 (392)
Q Consensus       350 d~~~~~~~~~W~~  362 (392)
                      |.++++  ..|+.
T Consensus       310 d~~tG~--~~W~~  320 (394)
T PRK11138        310 DTRGGV--ELWSQ  320 (394)
T ss_pred             ECCCCc--EEEcc
Confidence            666554  45864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.13  E-value=0.23  Score=46.27  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=84.4

Q ss_pred             EEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEE-C-CEEEEEeecccEEEEEECC--CCceeecc---cCCC--C
Q 016239          188 AVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALF-R-GRFYVFGIYSFSVSSFDLK--KHVWSEVQ---TLRP--P  256 (392)
Q Consensus       188 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~-~-g~ly~~gg~~~~i~~yd~~--~~~W~~i~---~~~~--~  256 (392)
                      .+.+|+...+.  .+....+..+.-.+    ....++. + ..+|+....++.|.+|+..  +.+++.+.   ..+.  .
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  242 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFT  242 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCC----CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccc
Confidence            67777776655  54432221111111    1233333 3 4799999888888888776  66666543   2222  1


Q ss_pred             cc-cceeEEee-CC-eEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEE
Q 016239          257 GV-MFSFLIAS-PN-MLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYV  333 (392)
Q Consensus       257 ~~-~~~~~~~~-~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  333 (392)
                      .. ..+.+... +| .||+....    ..++.++.+|..+.+-+.+...+...       +.  +| ++++...|+.||+
T Consensus       243 ~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~d~~~g~l~~~~~~~~~G-------~~--Pr-~~~~s~~g~~l~V  308 (345)
T PF10282_consen  243 GENAPAEIAISPDGRFLYVSNRG----SNSISVFDLDPATGTLTLVQTVPTGG-------KF--PR-HFAFSPDGRYLYV  308 (345)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEECTTTTTEEEEEEEEESS-------SS--EE-EEEE-TTSSEEEE
T ss_pred             ccCCceeEEEecCCCEEEEEecc----CCEEEEEEEecCCCceEEEEEEeCCC-------CC--cc-EEEEeCCCCEEEE
Confidence            11 22333333 45 45665432    22788888877777777766655421       00  01 4444447777887


Q ss_pred             EeccccCCCCeEEEEeecCCCccceeeeecC
Q 016239          334 FNEEYHKKYPACVCEIGTESDKCRCSWRRLP  364 (392)
Q Consensus       334 ~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~  364 (392)
                      .+.   ....+.++++|.+++.    +..+.
T Consensus       309 a~~---~s~~v~vf~~d~~tG~----l~~~~  332 (345)
T PF10282_consen  309 ANQ---DSNTVSVFDIDPDTGK----LTPVG  332 (345)
T ss_dssp             EET---TTTEEEEEEEETTTTE----EEEEE
T ss_pred             Eec---CCCeEEEEEEeCCCCc----EEEec
Confidence            763   4456777888999998    77765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF13854 Kelch_5: Kelch motif

Probab=97.13  E-value=0.001  Score=40.72  Aligned_cols=37  Identities=16%  Similarity=0.031  Sum_probs=28.4

Q ss_pred             cccceeEEeeCCeEEEEEeecC-CCCCceeEEEeecCc
Q 016239          257 GVMFSFLIASPNMLVLAGMCNA-PRGPSFNLWKVDELS  293 (392)
Q Consensus       257 ~~~~~~~~~~~g~l~v~gg~~~-~~~~~~~v~~~d~~~  293 (392)
                      .+..++++..+++||++||... ......++|+||..+
T Consensus         4 ~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    4 PRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            4556666888999999999874 444568999999764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.08  E-value=0.15  Score=50.19  Aligned_cols=45  Identities=20%  Similarity=0.422  Sum_probs=39.6

Q ss_pred             CcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239            8 SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      .-+..||.|+...||..|+.++++.++.||+.|+.+........+
T Consensus       106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~  150 (537)
T KOG0274|consen  106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR  150 (537)
T ss_pred             chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence            456779999999999999999999999999999999987765543

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.05  E-value=0.022  Score=52.81  Aligned_cols=129  Identities=13%  Similarity=0.108  Sum_probs=79.0

Q ss_pred             ECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCC------ceeEEEeec-----
Q 016239          223 FRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGP------SFNLWKVDE-----  291 (392)
Q Consensus       223 ~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~------~~~v~~~d~-----  291 (392)
                      .+.+|+.++.. +.+..||+++..-...+.+.. .......+.++++||++.........      ..++..|+.     
T Consensus        75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~l~~-pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~  152 (342)
T PF07893_consen   75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPRLHS-PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDP  152 (342)
T ss_pred             cCCeEEEEcCC-CCeEEEECCCCeEeccCCCCC-CCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccc
Confidence            57888888665 568999999998776666544 23344567779999999864333111      556666652     


Q ss_pred             ---CccceEecccCCHHHHHhhcCCcccCccceeEEEEe-CCEEEEEe-ccccCCCCeEEEEeecCCCccceeeeecCC-
Q 016239          292 ---LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFN-EEYHKKYPACVCEIGTESDKCRCSWRRLPQ-  365 (392)
Q Consensus       292 ---~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~g-g~~~~~~~~~~~~~d~~~~~~~~~W~~~~~-  365 (392)
                         ....|+.++..|-...      .....+...+-+++ |..|||.- +..     ..+|-+|.++.+    |+.++. 
T Consensus       153 ~~~~~w~W~~LP~PPf~~~------~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~----W~~~GdW  217 (342)
T PF07893_consen  153 SPEESWSWRSLPPPPFVRD------RRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHE----WRKHGDW  217 (342)
T ss_pred             cCCCcceEEcCCCCCcccc------CCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcc----eeeccce
Confidence               2335777666442211      00000013344455 88999943 311     335777998888    999976 


Q ss_pred             -CCC
Q 016239          366 -LPS  368 (392)
Q Consensus       366 -~p~  368 (392)
                       ||+
T Consensus       218 ~LPF  221 (342)
T PF07893_consen  218 MLPF  221 (342)
T ss_pred             ecCc
Confidence             665

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=97.03  E-value=0.0056  Score=50.32  Aligned_cols=82  Identities=11%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             eEEECCEEEEEeeccc-----EEEEEECCCCce-eecccCCCCc--ccceeE-EeeCCeEEEEEeecCCCCCceeEEEee
Q 016239          220 SALFRGRFYVFGIYSF-----SVSSFDLKKHVW-SEVQTLRPPG--VMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       220 ~~~~~g~ly~~gg~~~-----~i~~yd~~~~~W-~~i~~~~~~~--~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      +|.+||.+|+++....     .|.+||+.++++ ..++.|....  .....+ ++.+++|.++-...  ....++||+++
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~--~~~~~~IWvm~   78 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD--ETSKIEIWVMK   78 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc--CCccEEEEEEe
Confidence            3788999999986542     699999999999 5554443322  223334 33478898875322  22359999997


Q ss_pred             c---CccceEecccCC
Q 016239          291 E---LSMEFSEIAIMP  303 (392)
Q Consensus       291 ~---~~~~W~~~~~~p  303 (392)
                      .   ...+|+++-.++
T Consensus        79 ~~~~~~~SWtK~~~i~   94 (164)
T PF07734_consen   79 KYGYGKESWTKLFTID   94 (164)
T ss_pred             eeccCcceEEEEEEEe
Confidence            3   367899987654

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.94  E-value=0.03  Score=51.95  Aligned_cols=126  Identities=17%  Similarity=0.175  Sum_probs=75.9

Q ss_pred             ecceEEeec---CcceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc-
Q 016239          108 ANGFFFTTT---PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI-  183 (392)
Q Consensus       108 ~~g~i~v~g---g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~-  183 (392)
                      .+.+|+.++   ...+||+. +..-...|.++.+.....++.+                 +++||++..........+. 
T Consensus        75 ~gskIv~~d~~~~t~vyDt~-t~av~~~P~l~~pk~~pisv~V-----------------G~~LY~m~~~~~~~~~~~~~  136 (342)
T PF07893_consen   75 HGSKIVAVDQSGRTLVYDTD-TRAVATGPRLHSPKRCPISVSV-----------------GDKLYAMDRSPFPEPAGRPD  136 (342)
T ss_pred             cCCeEEEEcCCCCeEEEECC-CCeEeccCCCCCCCcceEEEEe-----------------CCeEEEeeccCccccccCcc
Confidence            488888884   46899998 6777777888877777666677                 8889999765321110000 


Q ss_pred             ccceEEEEEeC--------CCCCeecCCCCCCCCCCCCCc--cceeeEEE-CCEEEEE-eecccEEEEEECCCCceeecc
Q 016239          184 EDRLAVEIYDP--------HSDSWELCPPLPADFRSGYSS--QYLSSALF-RGRFYVF-GIYSFSVSSFDLKKHVWSEVQ  251 (392)
Q Consensus       184 ~~~~~~~~yd~--------~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~-~g~ly~~-gg~~~~i~~yd~~~~~W~~i~  251 (392)
                      ....++..|+.        ..-.|+.+++.|.. ......  .-.+-+++ +..|++- .+.....++||+.+.+|+.+.
T Consensus       137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~-~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~G  215 (342)
T PF07893_consen  137 FPCFEALVYRPPPDDPSPEESWSWRSLPPPPFV-RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHG  215 (342)
T ss_pred             ceeEEEeccccccccccCCCcceEEcCCCCCcc-ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence            00223444442        23367787764433 221000  02334455 5578873 332235899999999999985


Q ss_pred             c
Q 016239          252 T  252 (392)
Q Consensus       252 ~  252 (392)
                      .
T Consensus       216 d  216 (342)
T PF07893_consen  216 D  216 (342)
T ss_pred             c
Confidence            5

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.73  E-value=0.48  Score=43.72  Aligned_cols=122  Identities=15%  Similarity=0.077  Sum_probs=69.3

Q ss_pred             CEEEEEeecccEEEEEECC--CCceeec---ccCCC---CcccceeEE-eeCCe-EEEEEeecCCCCCceeEEEeecCcc
Q 016239          225 GRFYVFGIYSFSVSSFDLK--KHVWSEV---QTLRP---PGVMFSFLI-ASPNM-LVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~--~~~W~~i---~~~~~---~~~~~~~~~-~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ..+|+.....+.|.+||..  +++.+.+   ...+.   .......+. .-+++ ||+...    ....+.+|.++..+.
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~~~~  262 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR----TASLISVFSVSEDGS  262 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC----CCCeEEEEEEeCCCC
Confidence            3688887767889888886  3454443   22222   111111122 23554 565422    122688887777666


Q ss_pred             ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCC
Q 016239          295 EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPS  368 (392)
Q Consensus       295 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~  368 (392)
                      .++.+...+....          ++ .+.+...|..||+.+.   ....+.++++|.+++.    +..+..++.
T Consensus       263 ~~~~~~~~~~~~~----------p~-~~~~~~dg~~l~va~~---~~~~v~v~~~~~~~g~----l~~~~~~~~  318 (330)
T PRK11028        263 VLSFEGHQPTETQ----------PR-GFNIDHSGKYLIAAGQ---KSHHISVYEIDGETGL----LTELGRYAV  318 (330)
T ss_pred             eEEEeEEEecccc----------CC-ceEECCCCCEEEEEEc---cCCcEEEEEEcCCCCc----EEEcccccc
Confidence            6766665543310          01 3444456778888763   3456777777877877    777776654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.61  E-value=0.65  Score=43.76  Aligned_cols=192  Identities=16%  Similarity=0.113  Sum_probs=98.6

Q ss_pred             CceeeeeCCCCc--eeeCCCCCC--CCCcceEEeecceEEeec---CcceEecCCcC--ceeecCCCCcCc--------c
Q 016239           78 NQSFAFDPASNS--WFHLPPAQE--PRAGSCFIGANGFFFTTT---PRFGFSRILNT--SWHLTSPLRFSR--------I  140 (392)
Q Consensus        78 ~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~g~i~v~g---g~~~ynp~~~~--~W~~~~~~~~~r--------~  140 (392)
                      ..+.++|+++.+  |..-...+.  .+...+.+..++.+|+..   ....+|+. ++  .|+.--..+...        .
T Consensus       155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~~  233 (377)
T TIGR03300       155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQ-TGQPLWEQRVALPKGRTELERLVDV  233 (377)
T ss_pred             CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEcc-CCCEeeeeccccCCCCCchhhhhcc
Confidence            347788887654  654222111  111223344466666542   24678886 44  575322111111        1


Q ss_pred             CceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccce
Q 016239          141 NPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYL  218 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~  218 (392)
                      ..+.++.                 ++.+|+....            ..+..||..+++  |+.-.  ..         ..
T Consensus       234 ~~~p~~~-----------------~~~vy~~~~~------------g~l~a~d~~tG~~~W~~~~--~~---------~~  273 (377)
T TIGR03300       234 DGDPVVD-----------------GGQVYAVSYQ------------GRVAALDLRSGRVLWKRDA--SS---------YQ  273 (377)
T ss_pred             CCccEEE-----------------CCEEEEEEcC------------CEEEEEECCCCcEEEeecc--CC---------cc
Confidence            1122233                 6778876432            157888887654  76531  11         13


Q ss_pred             eeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc-
Q 016239          219 SSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME-  295 (392)
Q Consensus       219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~-  295 (392)
                      ..+..++.+|+... .+.++++|..++  .|+.-. +.  .......+..++.||+...       ...++.+|..+.+ 
T Consensus       274 ~p~~~~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~-~~--~~~~ssp~i~g~~l~~~~~-------~G~l~~~d~~tG~~  342 (377)
T TIGR03300       274 GPAVDDNRLYVTDA-DGVVVALDRRSGSELWKNDE-LK--YRQLTAPAVVGGYLVVGDF-------EGYLHWLSREDGSF  342 (377)
T ss_pred             CceEeCCEEEEECC-CCeEEEEECCCCcEEEcccc-cc--CCccccCEEECCEEEEEeC-------CCEEEEEECCCCCE
Confidence            44567889998753 568999999765  576521 11  1112223446777877542       2345566765443 


Q ss_pred             -eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          296 -FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       296 -W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                       |+. . ++...             ...+-+..+++||+.+.
T Consensus       343 ~~~~-~-~~~~~-------------~~~sp~~~~~~l~v~~~  369 (377)
T TIGR03300       343 VARL-K-TDGSG-------------IASPPVVVGDGLLVQTR  369 (377)
T ss_pred             EEEE-E-cCCCc-------------cccCCEEECCEEEEEeC
Confidence             532 1 11110             12344577788887763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.61  E-value=0.34  Score=45.11  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             eeeEEE-C-CEEEEEeecccEEEEEECCCCc--eeecccC-CCCcccceeEEee-C-CeEEEEEeecCCCCCceeEEEee
Q 016239          218 LSSALF-R-GRFYVFGIYSFSVSSFDLKKHV--WSEVQTL-RPPGVMFSFLIAS-P-NMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       218 ~~~~~~-~-g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~-~~~~~~~~~~~~~-~-g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      |.+... + ..+|+..-..+.|..|+...+.  ....... .+.+..-..++.. + ..+|++....    ..+.++.++
T Consensus       147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s----~~v~v~~~~  222 (345)
T PF10282_consen  147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS----NTVSVFDYD  222 (345)
T ss_dssp             EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEE
T ss_pred             eeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC----CcEEEEeec
Confidence            454444 3 3577765445789999887765  5443221 1112222222333 3 4678876322    267888888


Q ss_pred             cCccceEecc---cCCHHHHHhhcCCcccCccceeEEEEe--CCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          291 ELSMEFSEIA---IMPHDFLYSLVDTEEDDKFASLKCVGL--GNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       291 ~~~~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      ..+..++.+.   .+|..    +-+.     .....+...  |..||+...   +...+.++++|.++++
T Consensus       223 ~~~g~~~~~~~~~~~~~~----~~~~-----~~~~~i~ispdg~~lyvsnr---~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  223 PSDGSLTEIQTISTLPEG----FTGE-----NAPAEIAISPDGRFLYVSNR---GSNSISVFDLDPATGT  280 (345)
T ss_dssp             TTTTEEEEEEEEESCETT----SCSS-----SSEEEEEE-TTSSEEEEEEC---TTTEEEEEEECTTTTT
T ss_pred             ccCCceeEEEEeeecccc----cccc-----CCceeEEEecCCCEEEEEec---cCCEEEEEEEecCCCc
Confidence            6566666554   45442    1111     123444444  678888774   3566777888777666

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.57  E-value=0.47  Score=41.68  Aligned_cols=187  Identities=15%  Similarity=0.041  Sum_probs=99.3

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC--cceEecCCcCceeecCCCCcCc--cCceEEEEEcCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP--RFGFSRILNTSWHLTSPLRFSR--INPLVGVFYDHD  151 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg--~~~ynp~~~~~W~~~~~~~~~r--~~~~~~~~~~~~  151 (392)
                      .+++.+++.++.-.......    ..+++..  +|.+|+...  ..++|+. +++++.+...+...  .....-+..++ 
T Consensus        22 ~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~~~~d~~-~g~~~~~~~~~~~~~~~~~~ND~~vd~-   95 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGIAVVDPD-TGKVTVLADLPDGGVPFNRPNDVAVDP-   95 (246)
T ss_dssp             TEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCEEEEETT-TTEEEEEEEEETTCSCTEEEEEEEE-T-
T ss_pred             CEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCceEEEecC-CCcEEEEeeccCCCcccCCCceEEEcC-
Confidence            57899999887764432222    2344443  788887743  4677998 78888776653211  11111122222 


Q ss_pred             CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC-CCCCCCCCCCCccceeeEEE-CC-EEE
Q 016239          152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP-PLPADFRSGYSSQYLSSALF-RG-RFY  228 (392)
Q Consensus       152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~-~g-~ly  228 (392)
                                   ++.+|+---.....   .......++.+++. ++.+.+. .+..+         .+.+.. ++ .||
T Consensus        96 -------------~G~ly~t~~~~~~~---~~~~~g~v~~~~~~-~~~~~~~~~~~~p---------NGi~~s~dg~~ly  149 (246)
T PF08450_consen   96 -------------DGNLYVTDSGGGGA---SGIDPGSVYRIDPD-GKVTVVADGLGFP---------NGIAFSPDGKTLY  149 (246)
T ss_dssp             -------------TS-EEEEEECCBCT---TCGGSEEEEEEETT-SEEEEEEEEESSE---------EEEEEETTSSEEE
T ss_pred             -------------CCCEEEEecCCCcc---ccccccceEEECCC-CeEEEEecCcccc---------cceEECCcchhee
Confidence                         66788753221000   00011578899987 5555543 22221         233333 34 688


Q ss_pred             EEeecccEEEEEECCCCc--eee---cccCCCCc-ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          229 VFGIYSFSVSSFDLKKHV--WSE---VQTLRPPG-VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       229 ~~gg~~~~i~~yd~~~~~--W~~---i~~~~~~~-~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      +.-...+.|++||+....  +..   +..++... .-....+..+|+||+....      ...|++||++...-..+. +
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i~-~  222 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREIE-L  222 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEEE--
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEEc-C
Confidence            887777899999996543  332   21222211 1122234458999987542      457888899866544443 4


Q ss_pred             C
Q 016239          303 P  303 (392)
Q Consensus       303 p  303 (392)
                      |
T Consensus       223 p  223 (246)
T PF08450_consen  223 P  223 (246)
T ss_dssp             S
T ss_pred             C
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.46  E-value=0.52  Score=40.93  Aligned_cols=184  Identities=16%  Similarity=0.217  Sum_probs=99.5

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCCCCCCcceEEeecceEEeecC---cceEecCCcC--cee-ec
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQEPRAGSCFIGANGFFFTTTP---RFGFSRILNT--SWH-LT  132 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~g~i~v~gg---~~~ynp~~~~--~W~-~~  132 (392)
                      .++.+|+..+      ...+.++|+.+.+  |..-  ++.+.. ......++.+|+...   .+.+|.. ++  .|+ ..
T Consensus        35 ~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~--~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~  104 (238)
T PF13360_consen   35 DGGRVYVASG------DGNLYALDAKTGKVLWRFD--LPGPIS-GAPVVDGGRVYVGTSDGSLYALDAK-TGKVLWSIYL  104 (238)
T ss_dssp             ETTEEEEEET------TSEEEEEETTTSEEEEEEE--CSSCGG-SGEEEETTEEEEEETTSEEEEEETT-TSCEEEEEEE
T ss_pred             eCCEEEEEcC------CCEEEEEECCCCCEEEEee--cccccc-ceeeecccccccccceeeeEecccC-Ccceeeeecc
Confidence            5667777632      2678999997776  5432  222211 224666888887742   4788966 44  787 34


Q ss_pred             CCCCcC--ccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCC
Q 016239          133 SPLRFS--RINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPAD  208 (392)
Q Consensus       133 ~~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~  208 (392)
                      ...+..  .......+.                 ++.+|+....            ..+..+|+.+++  |+.....+..
T Consensus       105 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~------------g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPAVD-----------------GDRLYVGTSS------------GKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             -SSCTCSTB--SEEEEE-----------------TTEEEEEETC------------SEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccccccCceEe-----------------cCEEEEEecc------------CcEEEEecCCCcEEEEeecCCCCC
Confidence            332222  223334444                 6667666521            158889988764  7764433321


Q ss_pred             CCCC---CCccceeeEEECCEEEEEeecccEEEEEECCCCc--eeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239          209 FRSG---YSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHV--WSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS  283 (392)
Q Consensus       209 ~~~~---~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~  283 (392)
                       ...   ........+..++.+|+..+... +..+|..+++  |+..  ...   ........++.||+.. .      .
T Consensus       156 -~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~-~------~  221 (238)
T PF13360_consen  156 -SSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTS-S------D  221 (238)
T ss_dssp             -S--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEEEEEC--SS----ECECEECCCTEEEEEE-T------T
T ss_pred             -CcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCCEEEEec--CCC---ccCCceeeCCEEEEEe-C------C
Confidence             110   00011333444688888876544 6667999987  7332  111   1222355577777765 2      2


Q ss_pred             eeEEEeecCccc--eE
Q 016239          284 FNLWKVDELSME--FS  297 (392)
Q Consensus       284 ~~v~~~d~~~~~--W~  297 (392)
                      ..++.+|..+.+  |+
T Consensus       222 ~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  222 GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCCEEeE
Confidence            355566776654  65

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.27  E-value=1  Score=42.37  Aligned_cols=203  Identities=14%  Similarity=0.096  Sum_probs=106.7

Q ss_pred             CCCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCCCCCCcceEEeecceEEeecC---cceEecCCcC--ceeec
Q 016239           60 SPRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQEPRAGSCFIGANGFFFTTTP---RFGFSRILNT--SWHLT  132 (392)
Q Consensus        60 ~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~  132 (392)
                      ..++.+|+....      ..++++|+.+++  |..-..  .. ...+.+..++.+|+.+.   ++.+|+. ++  .|+.-
T Consensus        63 v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~  132 (377)
T TIGR03300        63 VAGGKVYAADAD------GTVVALDAETGKRLWRVDLD--ER-LSGGVGADGGLVFVGTEKGEVIALDAE-DGKELWRAK  132 (377)
T ss_pred             EECCEEEEECCC------CeEEEEEccCCcEeeeecCC--CC-cccceEEcCCEEEEEcCCCEEEEEECC-CCcEeeeec
Confidence            345666665331      458899987665  653211  11 11234455788887643   4788986 44  67643


Q ss_pred             CCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC--CeecCCCCCC-CC
Q 016239          133 SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPLPA-DF  209 (392)
Q Consensus       133 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~-~~  209 (392)
                      ..  ... ....++.                 ++++|+..+.            ..+..+|..++  .|+.-...+. ..
T Consensus       133 ~~--~~~-~~~p~v~-----------------~~~v~v~~~~------------g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       133 LS--SEV-LSPPLVA-----------------NGLVVVRTND------------GRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             cC--cee-ecCCEEE-----------------CCEEEEECCC------------CeEEEEEcCCCceeeEEccCCCceee
Confidence            21  110 1112233                 6677775432            15788888765  4775432221 11


Q ss_pred             CCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCc-------ccceeEEeeCCeEEEEEeecCCC
Q 016239          210 RSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPG-------VMFSFLIASPNMLVLAGMCNAPR  280 (392)
Q Consensus       210 ~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~-------~~~~~~~~~~g~l~v~gg~~~~~  280 (392)
                      +..     .+.+..++.+| ++...+.+.++|+.++  .|+.-...+...       ......+..++.+|+...     
T Consensus       181 ~~~-----~sp~~~~~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-----  249 (377)
T TIGR03300       181 RGS-----ASPVIADGGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-----  249 (377)
T ss_pred             cCC-----CCCEEECCEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-----
Confidence            111     34556677665 4555578999998776  575432111100       011223445788887653     


Q ss_pred             CCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEe
Q 016239          281 GPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFN  335 (392)
Q Consensus       281 ~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g  335 (392)
                        ...++.+|.++.  .|+.-.  +                .....+..+++||+..
T Consensus       250 --~g~l~a~d~~tG~~~W~~~~--~----------------~~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       250 --QGRVAALDLRSGRVLWKRDA--S----------------SYQGPAVDDNRLYVTD  286 (377)
T ss_pred             --CCEEEEEECCCCcEEEeecc--C----------------CccCceEeCCEEEEEC
Confidence              234666676544  476421  0                0223346788998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.63  E-value=0.13  Score=45.12  Aligned_cols=152  Identities=14%  Similarity=0.067  Sum_probs=89.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.+|..-|.         ...+.+..||+.+++=....++|.. -++     -+.+.++++||.+.=..+..+.||..+
T Consensus        55 ~g~LyESTG~---------yG~S~l~~~d~~tg~~~~~~~l~~~-~Fg-----EGit~~~d~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   55 DGTLYESTGL---------YGQSSLRKVDLETGKVLQSVPLPPR-YFG-----EGITILGDKLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             TTEEEEEECS---------TTEEEEEEEETTTSSEEEEEE-TTT---E-----EEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCEEEEeCCC---------CCcEEEEEEECCCCcEEEEEECCcc-ccc-----eeEEEECCEEEEEEecCCeEEEEcccc
Confidence            7788887775         1345799999999886666667665 444     567788999999998888999999975


Q ss_pred             CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEE
Q 016239          245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKC  324 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~  324 (392)
                        ++.+...+-. ...-.++..+.+|++..|       +..++.+|+.+-+  .+..+....-     .. +. ..--..
T Consensus       120 --l~~~~~~~y~-~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~--~~~~i~V~~~-----g~-pv-~~LNEL  180 (264)
T PF05096_consen  120 --LKKIGTFPYP-GEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFK--EVRTIQVTDN-----GR-PV-SNLNEL  180 (264)
T ss_dssp             --TEEEEEEE-S-SS--EEEECSSCEEEE-S-------SSEEEEE-TTT-S--EEEEEE-EET-----TE-E----EEEE
T ss_pred             --ceEEEEEecC-CcceEEEcCCCEEEEECC-------ccceEEECCcccc--eEEEEEEEEC-----CE-EC-CCcEeE
Confidence              4555443322 234456767778888766       4567777887532  2222211100     00 00 012234


Q ss_pred             EEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          325 VGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       325 ~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      -.++++||.---     .+..++.+||++++
T Consensus       181 E~i~G~IyANVW-----~td~I~~Idp~tG~  206 (264)
T PF05096_consen  181 EYINGKIYANVW-----QTDRIVRIDPETGK  206 (264)
T ss_dssp             EEETTEEEEEET-----TSSEEEEEETTT-B
T ss_pred             EEEcCEEEEEeC-----CCCeEEEEeCCCCe
Confidence            456777776442     23345667888887

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.15  E-value=0.8  Score=42.81  Aligned_cols=162  Identities=8%  Similarity=0.010  Sum_probs=94.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~i~~yd~~  243 (392)
                      ..-+.+++|.+         ....++.-|-+++.  .+.++... ++.   -..+...-+|. ..+++|....++.||+.
T Consensus       224 ~~plllvaG~d---------~~lrifqvDGk~N~--~lqS~~l~-~fP---i~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  224 TAPLLLVAGLD---------GTLRIFQVDGKVNP--KLQSIHLE-KFP---IQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCC---------CcEEEEEecCccCh--hheeeeec-cCc---cceeeecCCCceEEEecccceEEEEeecc
Confidence            55677787773         23344444554544  44443332 221   00122223666 77788888899999999


Q ss_pred             CCceeecccCCCCc--ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccce
Q 016239          244 KHVWSEVQTLRPPG--VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFAS  321 (392)
Q Consensus       244 ~~~W~~i~~~~~~~--~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~  321 (392)
                      +.+.+.+.++....  .....-|..++.++++.|.      ...|..+...+++|----.++...             ..
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~------~G~I~lLhakT~eli~s~KieG~v-------------~~  349 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN------NGHIHLLHAKTKELITSFKIEGVV-------------SD  349 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEccc------CceEEeehhhhhhhhheeeeccEE-------------ee
Confidence            99988887654411  2222235556666666554      335566677788775433444432             24


Q ss_pred             eEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCC
Q 016239          322 LKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQL  366 (392)
Q Consensus       322 ~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~  366 (392)
                      +.+...+..|+++||..      .++..|..++.|.+.|..-+.+
T Consensus       350 ~~fsSdsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D~G~v  388 (514)
T KOG2055|consen  350 FTFSSDSKELLASGGTG------EVYVWNLRQNSCLHRFVDDGSV  388 (514)
T ss_pred             EEEecCCcEEEEEcCCc------eEEEEecCCcceEEEEeecCcc
Confidence            55556667777777621      2344588888888889876654

>smart00284 OLF Olfactomedin-like domains

Probab=94.93  E-value=2.4  Score=37.23  Aligned_cols=159  Identities=14%  Similarity=0.147  Sum_probs=90.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeC----CCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDP----HSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~y  240 (392)
                      ++++|++.+..        .....+..|..    ..+.+...-.+|.++. +     .+.++.||.||.--..+..|..|
T Consensus        34 ~~~~wv~~~~~--------~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~-G-----tG~VVYngslYY~~~~s~~iiKy   99 (255)
T smart00284       34 KSLYWYMPLNT--------RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQ-G-----TGVVVYNGSLYFNKFNSHDICRF   99 (255)
T ss_pred             CceEEEEcccc--------CCCcEEEEecCHHHHhccCCceEEECCCccc-c-----ccEEEECceEEEEecCCccEEEE
Confidence            46788875541        01224555543    2334433334555422 2     67889999999988778899999


Q ss_pred             ECCCCceeecccCCCC-----------cccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc----eEecccCCHH
Q 016239          241 DLKKHVWSEVQTLRPP-----------GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME----FSEIAIMPHD  305 (392)
Q Consensus       241 d~~~~~W~~i~~~~~~-----------~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~----W~~~~~~p~~  305 (392)
                      |+.+++-.....+|..           +....-+++-.+-|+++=....+ ...+.|=++|+.+.+    |..  ..+. 
T Consensus       100 dL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-~g~ivvSkLnp~tL~ve~tW~T--~~~k-  175 (255)
T smart00284      100 DLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-AGKIVISKLNPATLTIENTWIT--TYNK-  175 (255)
T ss_pred             ECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-CCCEEEEeeCcccceEEEEEEc--CCCc-
Confidence            9999976544333321           11112245556667665322221 125666677776543    543  2222 


Q ss_pred             HHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          306 FLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                                   +....++.+-|.||++.. .........+-+|..+++
T Consensus       176 -------------~sa~naFmvCGvLY~~~s-~~~~~~~I~yayDt~t~~  211 (255)
T smart00284      176 -------------RSASNAFMICGILYVTRS-LGSKGEKVFYAYDTNTGK  211 (255)
T ss_pred             -------------ccccccEEEeeEEEEEcc-CCCCCcEEEEEEECCCCc
Confidence                         234577788899999864 222333334555887766

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=94.50  E-value=1.6  Score=38.50  Aligned_cols=106  Identities=14%  Similarity=0.297  Sum_probs=59.8

Q ss_pred             eecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCC
Q 016239          130 HLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADF  209 (392)
Q Consensus       130 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~  209 (392)
                      ..+...|.+|+.|++.++....             +...+++||......         .+   -.|..|..+-+.|.  
T Consensus        79 eLvGdvP~aRYGHt~~vV~SrG-------------Kta~VlFGGRSY~P~---------~q---RTTenWNsVvDC~P--  131 (337)
T PF03089_consen   79 ELVGDVPEARYGHTINVVHSRG-------------KTACVLFGGRSYMPP---------GQ---RTTENWNSVVDCPP--  131 (337)
T ss_pred             eecCCCCcccccceEEEEEECC-------------cEEEEEECCcccCCc---------cc---cchhhcceeccCCC--
Confidence            3568899999999999886542             456777888732111         00   12456766654333  


Q ss_pred             CCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceee--cccCCCCcccceeEEeeCCeEEEEEeecCC-CCCceeE
Q 016239          210 RSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSE--VQTLRPPGVMFSFLIASPNMLVLAGMCNAP-RGPSFNL  286 (392)
Q Consensus       210 ~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~--i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~-~~~~~~v  286 (392)
                                      .+|++          |++-+-.+.  ++.+. .+..++...+-++.+|++||..-. +...-.+
T Consensus       132 ----------------~VfLi----------DleFGC~tah~lpEl~-dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l  184 (337)
T PF03089_consen  132 ----------------QVFLI----------DLEFGCCTAHTLPELQ-DGQSFHVSLARNDCVYILGGHSLESDSRPPRL  184 (337)
T ss_pred             ----------------eEEEE----------eccccccccccchhhc-CCeEEEEEEecCceEEEEccEEccCCCCCCcE
Confidence                            23333          333322222  22222 466677767779999999985432 2223455


Q ss_pred             EEe
Q 016239          287 WKV  289 (392)
Q Consensus       287 ~~~  289 (392)
                      +++
T Consensus       185 ~rl  187 (337)
T PF03089_consen  185 YRL  187 (337)
T ss_pred             EEE
Confidence            554

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.47  E-value=0.61  Score=41.76  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC-----CHHHHHh
Q 016239          235 FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM-----PHDFLYS  309 (392)
Q Consensus       235 ~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~-----p~~~~~~  309 (392)
                      ..|..||+.+.+|.....-.. +........-+++||+.|-..-.......+-.||.++.+|+.+..-     |...   
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~-G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv---   91 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGIS-GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV---   91 (281)
T ss_pred             CEEEEEECCCCEeecCCCCce-EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE---
Confidence            578999999999999865422 2222222234788888885433332356666779999999887762     3221   


Q ss_pred             hcCCcccCccceeEEEE-eCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCC
Q 016239          310 LVDTEEDDKFASLKCVG-LGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQ  365 (392)
Q Consensus       310 ~~~~~~~~~~~~~~~~~-~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~  365 (392)
                                ....... .++.+++.|..  ......+..+|  ..+    |+.+..
T Consensus        92 ----------~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~----W~~i~~  130 (281)
T PF12768_consen   92 ----------TALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSS----WSSIGS  130 (281)
T ss_pred             ----------EEEEeeccCCceEEEecee--cCCCceEEEEc--CCc----eEeccc
Confidence                      1222222 44567777754  22333444453  234    988876

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.44  E-value=0.78  Score=41.11  Aligned_cols=104  Identities=21%  Similarity=0.267  Sum_probs=64.5

Q ss_pred             cceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeec------ccEEEEEECCCCceeecccCC---
Q 016239          185 DRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIY------SFSVSSFDLKKHVWSEVQTLR---  254 (392)
Q Consensus       185 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~------~~~i~~yd~~~~~W~~i~~~~---  254 (392)
                      .+..+-.||..+.+|..+..--.. .      -...... +++||+.|-.      ...+..||.++.+|+.+....   
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G-~------V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~   86 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISG-T------VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNS   86 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceE-E------EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccccc
Confidence            356788999999999998743111 1      1233333 6778887743      247899999999999986632   


Q ss_pred             CCcccceeEEe---eCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          255 PPGVMFSFLIA---SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       255 ~~~~~~~~~~~---~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      .++.. .++..   -.+++++.|.. ...  ...+..||  ..+|..+..
T Consensus        87 ipgpv-~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPV-TALTFISNDGSNFWVAGRS-ANG--STFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             CCCcE-EEEEeeccCCceEEEecee-cCC--CceEEEEc--CCceEeccc
Confidence            11111 22222   34567887764 222  34455555  558998876

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.41  E-value=0.025  Score=50.07  Aligned_cols=43  Identities=21%  Similarity=0.410  Sum_probs=38.0

Q ss_pred             ccCCcHHHHHHHHhhC-----ChhhHHHhhccchhhhhhhcCcchhhH
Q 016239           10 FTTLSTDITERILSLL-----PIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus        10 ~~~Lp~dl~~~iL~rL-----P~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      +.-||+|++.+||.++     .+.++.++.+|||.|..+...|+++..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            3679999999998654     568999999999999999999998876

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.19  E-value=4.3  Score=36.87  Aligned_cols=200  Identities=13%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             eeeeeCCCCceeeCCC-CCCCCCcceEEee-cceEEeecCc-ceEecC-CcCceeecCCCCcCccCceEEEEEcCCCCcc
Q 016239           80 SFAFDPASNSWFHLPP-AQEPRAGSCFIGA-NGFFFTTTPR-FGFSRI-LNTSWHLTSPLRFSRINPLVGVFYDHDRGHC  155 (392)
Q Consensus        80 ~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~g~i~v~gg~-~~ynp~-~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~  155 (392)
                      ++.-.-...+|.+++. .+.|-..+.+... ++.+.+.+.. -+|-.. -..+|+.+..-... .-..+...  .     
T Consensus        83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~--~-----  154 (302)
T PF14870_consen   83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSG-SINDITRS--S-----  154 (302)
T ss_dssp             EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S-----EEEEEE---T-----
T ss_pred             EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcc-eeEeEEEC--C-----
Confidence            3444446778998753 2333333444443 4455554432 223221 14599876432221 11111111  1     


Q ss_pred             cccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecc
Q 016239          156 DLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYS  234 (392)
Q Consensus       156 ~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~  234 (392)
                               ++++++++...        .   -....|+....|+...-.-.. |.      .++.+. ++.|++++ ..
T Consensus       155 ---------dG~~vavs~~G--------~---~~~s~~~G~~~w~~~~r~~~~-ri------q~~gf~~~~~lw~~~-~G  206 (302)
T PF14870_consen  155 ---------DGRYVAVSSRG--------N---FYSSWDPGQTTWQPHNRNSSR-RI------QSMGFSPDGNLWMLA-RG  206 (302)
T ss_dssp             ---------TS-EEEEETTS--------S---EEEEE-TT-SS-EEEE--SSS--E------EEEEE-TTS-EEEEE-TT
T ss_pred             ---------CCcEEEEECcc--------c---EEEEecCCCccceEEccCccc-ee------hhceecCCCCEEEEe-CC
Confidence                     66766666430        1   233557777889887533222 32      333333 56777765 44


Q ss_pred             cEEEEEE--CCCCceeecccCCC-CcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc---CCHHHH
Q 016239          235 FSVSSFD--LKKHVWSEVQTLRP-PGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI---MPHDFL  307 (392)
Q Consensus       235 ~~i~~yd--~~~~~W~~i~~~~~-~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~---~p~~~~  307 (392)
                      +.|..=|  -..++|++-..+.. .......++ .-+++++++||..       .+++=.-..++|++...   .|..++
T Consensus       207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S~DgGktW~~~~~~~~~~~n~~  279 (302)
T PF14870_consen  207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------TLLVSTDGGKTWQKDRVGENVPSNLY  279 (302)
T ss_dssp             TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--------EEEESSTTSS-EE-GGGTTSSS---
T ss_pred             cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-------cEEEeCCCCccceECccccCCCCceE
Confidence            5565555  45668888433222 222222223 2368899998742       44444556788998754   454432


Q ss_pred             HhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          308 YSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                                   . -.+...++-|++|.
T Consensus       280 -------------~-i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  280 -------------R-IVFVNPDKGFVLGQ  294 (302)
T ss_dssp             -------------E-EEEEETTEEEEE-S
T ss_pred             -------------E-EEEcCCCceEEECC
Confidence                         2 23346689999984

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=94.03  E-value=4.9  Score=36.98  Aligned_cols=20  Identities=15%  Similarity=0.187  Sum_probs=15.4

Q ss_pred             CEEEEEeecccEEEEEECCC
Q 016239          225 GRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ..+|+..-..+.|..||+.+
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECC
Confidence            36777766668999999976

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.97  E-value=4.1  Score=35.90  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=92.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCC-----CCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH-----SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~  239 (392)
                      +.++|++.+..          ...+..|...     .+.....-.+|.++. +     .+.++.||.+|.--..+..|..
T Consensus        30 ~~~iy~~~~~~----------~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~-G-----tG~vVYngslYY~~~~s~~Ivk   93 (250)
T PF02191_consen   30 SEKIYVTSGFS----------GNTVYEYRNYEDFLRNGRSSRTYKLPYPWQ-G-----TGHVVYNGSLYYNKYNSRNIVK   93 (250)
T ss_pred             CCCEEEECccC----------CCEEEEEcCHhHHhhcCCCceEEEEeceec-c-----CCeEEECCcEEEEecCCceEEE
Confidence            77899998762          1145555432     233333334554422 2     5678899999999888889999


Q ss_pred             EECCCCcee---ecccCCC--------CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc----ceEecccCCH
Q 016239          240 FDLKKHVWS---EVQTLRP--------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM----EFSEIAIMPH  304 (392)
Q Consensus       240 yd~~~~~W~---~i~~~~~--------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~----~W~~~~~~p~  304 (392)
                      ||+.+++-.   .++....        .+....-+++-+.-|+++=...... ..+.|=++|+.+.    +|..  ..+.
T Consensus        94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T--~~~k  170 (250)
T PF02191_consen   94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNT--SYPK  170 (250)
T ss_pred             EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEe--ccCc
Confidence            999998655   3322111        1111122455567777765433322 1466667777654    4652  3333


Q ss_pred             HHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          305 DFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      .              ....++.+-|.||++....... ....+-+|..+++
T Consensus       171 ~--------------~~~naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~  206 (250)
T PF02191_consen  171 R--------------SAGNAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGK  206 (250)
T ss_pred             h--------------hhcceeeEeeEEEEEEECCCCC-cEEEEEEECCCCc
Confidence            3              2446778889999998643322 3444445888877

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK13684 Ycf48-like protein; Provisional

Probab=93.93  E-value=5.2  Score=37.06  Aligned_cols=114  Identities=13%  Similarity=0.144  Sum_probs=59.8

Q ss_pred             eCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEE-C-CCCceeecccCCC-CcccceeEE-eeC
Q 016239          193 DPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFD-L-KKHVWSEVQTLRP-PGVMFSFLI-ASP  267 (392)
Q Consensus       193 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd-~-~~~~W~~i~~~~~-~~~~~~~~~-~~~  267 (392)
                      |....+|+.+...... ..      ...+. -++.++++|.. +.+ .+. . .-.+|+.+..+.. .......+. ..+
T Consensus       200 ~~gg~tW~~~~~~~~~-~l------~~i~~~~~g~~~~vg~~-G~~-~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~  270 (334)
T PRK13684        200 EPGQTAWTPHQRNSSR-RL------QSMGFQPDGNLWMLARG-GQI-RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP  270 (334)
T ss_pred             CCCCCeEEEeeCCCcc-cc------eeeeEcCCCCEEEEecC-CEE-EEccCCCCCccccccCCccccccceeeEEEcCC
Confidence            4445679888542221 11      23333 36788887653 433 342 2 3358997644322 122222223 337


Q ss_pred             CeEEEEEeecCCCCCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          268 NMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       268 g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                      +.++++|..       -.++.-.....+|+.+..   +|..              ....+...++++|+.|.
T Consensus       271 ~~~~~~G~~-------G~v~~S~d~G~tW~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        271 GEIWAGGGN-------GTLLVSKDGGKTWEKDPVGEEVPSN--------------FYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             CCEEEEcCC-------CeEEEeCCCCCCCeECCcCCCCCcc--------------eEEEEEeCCCceEEECC
Confidence            788888742       223333445678998753   3322              13344456888888884

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.40  E-value=1.6  Score=38.36  Aligned_cols=144  Identities=13%  Similarity=0.057  Sum_probs=85.2

Q ss_pred             CCEEEEEeecc-cEEEEEECCCC-----ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239          224 RGRFYVFGIYS-FSVSSFDLKKH-----VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       224 ~g~ly~~gg~~-~~i~~yd~~~~-----~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~  297 (392)
                      ++++|++.+.. +.|..|...+.     .....-.+|- .......++.+|.||.--.      .+..|-+||..++.=.
T Consensus        30 ~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~-~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~  102 (250)
T PF02191_consen   30 SEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPY-PWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVV  102 (250)
T ss_pred             CCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEec-eeccCCeEEECCcEEEEec------CCceEEEEECcCCcEE
Confidence            46788887765 45666643222     2222222222 2334456889999987543      1567788898888755


Q ss_pred             ecccCCHHHHH--hhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcccccce
Q 016239          298 EIAIMPHDFLY--SLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHK  375 (392)
Q Consensus       298 ~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~  375 (392)
                      ....+|.....  ..+.   ..+....-+++.++=|+++=......+.+.+-.+|+++-.-++.|..  .++  +...+-
T Consensus       103 ~~~~L~~A~~~n~~~y~---~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~--k~~~~n  175 (250)
T PF02191_consen  103 ARRELPGAGYNNRFPYY---WSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYP--KRSAGN  175 (250)
T ss_pred             EEEECCcccccccccee---cCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccC--chhhcc
Confidence            44456655432  0110   11234577778888888876544444456666669988887888997  344  344555


Q ss_pred             EEEeec
Q 016239          376 VISFCS  381 (392)
Q Consensus       376 ~~~~~~  381 (392)
                      +++.|+
T Consensus       176 aFmvCG  181 (250)
T PF02191_consen  176 AFMVCG  181 (250)
T ss_pred             eeeEee
Confidence            566665

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>smart00284 OLF Olfactomedin-like domains

Probab=93.35  E-value=2.6  Score=37.04  Aligned_cols=146  Identities=8%  Similarity=0.069  Sum_probs=83.6

Q ss_pred             CCEEEEEeec---ccEEEEEEC----CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          224 RGRFYVFGIY---SFSVSSFDL----KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~---~~~i~~yd~----~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      ++++|++.+.   ...+..|..    ........-.+|- .......++.+|.||.--..      +..|-+||..+++-
T Consensus        34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~-~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v  106 (255)
T smart00284       34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPH-AGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETY  106 (255)
T ss_pred             CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCC-ccccccEEEECceEEEEecC------CccEEEEECCCCcE
Confidence            5788888664   246666643    3333333222222 33445568999999984421      45677889988876


Q ss_pred             EecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCCcccccceE
Q 016239          297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPSPVNEFHKV  376 (392)
Q Consensus       297 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~~~~~~~~~  376 (392)
                      .....+|...++.-+.- .-.+....-+++.++=|+++=......+.+.+-.+||.+-+-+..|..  .+|  +...+-+
T Consensus       107 ~~~~~Lp~a~y~~~~~Y-~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~--k~sa~na  181 (255)
T smart00284      107 QKEPLLNGAGYNNRFPY-AWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYN--KRSASNA  181 (255)
T ss_pred             EEEEecCcccccccccc-ccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC--ccccccc
Confidence            55555665432211100 000123466777777777763333334555555679988777778998  444  4444555


Q ss_pred             EEeec
Q 016239          377 ISFCS  381 (392)
Q Consensus       377 ~~~~~  381 (392)
                      ++-|+
T Consensus       182 FmvCG  186 (255)
T smart00284      182 FMICG  186 (255)
T ss_pred             EEEee
Confidence            56665

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.35  E-value=1  Score=42.37  Aligned_cols=126  Identities=19%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             EEEEEeCCCCCeec-CCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCC--CcccceeEE
Q 016239          188 AVEIYDPHSDSWEL-CPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP--PGVMFSFLI  264 (392)
Q Consensus       188 ~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~--~~~~~~~~~  264 (392)
                      .+.+|+..+..=.. ++.+    +..   .+....-.+|+|...|+.++.|-.||.++..  .+..+..  .+.......
T Consensus        49 rvqly~~~~~~~~k~~srF----k~~---v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah~apv~~~~f~  119 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSRF----KDV---VYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--ILRQLYAHQAPVHVTKFS  119 (487)
T ss_pred             EEEEEecchhhhhhhHHhh----ccc---eeEEEeecCCeEEEccCCcCcEEEeccccHH--HHHHHhhccCceeEEEec
Confidence            68899877654322 2222    211   0112222379999999999999999965521  1111111  111111223


Q ss_pred             eeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC
Q 016239          265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK  341 (392)
Q Consensus       265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~  341 (392)
                      ..++.+++.|..+.    ...+|  |..+.. .+..-....=           .-...++...++.|++.|| |++.
T Consensus       120 ~~d~t~l~s~sDd~----v~k~~--d~s~a~-v~~~l~~htD-----------YVR~g~~~~~~~hivvtGs-YDg~  177 (487)
T KOG0310|consen  120 PQDNTMLVSGSDDK----VVKYW--DLSTAY-VQAELSGHTD-----------YVRCGDISPANDHIVVTGS-YDGK  177 (487)
T ss_pred             ccCCeEEEecCCCc----eEEEE--EcCCcE-EEEEecCCcc-----------eeEeeccccCCCeEEEecC-CCce
Confidence            45888888886543    57788  444443 2222211111           1124556667788888887 5443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.10  E-value=3.5  Score=37.83  Aligned_cols=135  Identities=13%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             eEEEEEeCCCC-----CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCc-eeecccCCCCcccc
Q 016239          187 LAVEIYDPHSD-----SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHV-WSEVQTLRPPGVMF  260 (392)
Q Consensus       187 ~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~-W~~i~~~~~~~~~~  260 (392)
                      ..+.+|+....     +.+.+...... ..     -.+.+.++|+|.+.-|  +.|..|+....+ +......... ...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~-g~-----V~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~-~~i  132 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVK-GP-----VTAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSP-FYI  132 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEES-S------EEEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEEE-BS-SSE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeec-Cc-----ceEhhhhCCEEEEeec--CEEEEEEccCcccchhhheecce-EEE
Confidence            56888888774     45555322221 11     2566677898655555  588899988887 7666554332 234


Q ss_pred             eeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEe-CCEEEEEecccc
Q 016239          261 SFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFNEEYH  339 (392)
Q Consensus       261 ~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~gg~~~  339 (392)
                      ..+.+.++.|++..-.     .++.++.|+.+..+-..++.-...             +...++..+ ++. .++++  +
T Consensus       133 ~sl~~~~~~I~vgD~~-----~sv~~~~~~~~~~~l~~va~d~~~-------------~~v~~~~~l~d~~-~~i~~--D  191 (321)
T PF03178_consen  133 TSLSVFKNYILVGDAM-----KSVSLLRYDEENNKLILVARDYQP-------------RWVTAAEFLVDED-TIIVG--D  191 (321)
T ss_dssp             EEEEEETTEEEEEESS-----SSEEEEEEETTTE-EEEEEEESS--------------BEEEEEEEE-SSS-EEEEE--E
T ss_pred             EEEeccccEEEEEEcc-----cCEEEEEEEccCCEEEEEEecCCC-------------ccEEEEEEecCCc-EEEEE--c
Confidence            4456667766654322     278888899877767777664433             234455554 545 44443  2


Q ss_pred             CCCCeEEEEeec
Q 016239          340 KKYPACVCEIGT  351 (392)
Q Consensus       340 ~~~~~~~~~~d~  351 (392)
                      ..+.+.++++++
T Consensus       192 ~~gnl~~l~~~~  203 (321)
T PF03178_consen  192 KDGNLFVLRYNP  203 (321)
T ss_dssp             TTSEEEEEEE-S
T ss_pred             CCCeEEEEEECC
Confidence            345555666644

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=93.05  E-value=6.2  Score=35.13  Aligned_cols=91  Identities=11%  Similarity=0.035  Sum_probs=45.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~~~i~~yd~~  243 (392)
                      +..+|+.++.           ...+.+||..+++....  ++......     .....-++ .+|+.++..+.+..||+.
T Consensus        42 g~~l~~~~~~-----------~~~v~~~d~~~~~~~~~--~~~~~~~~-----~~~~~~~g~~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        42 GKLLYVCASD-----------SDTIQVIDLATGEVIGT--LPSGPDPE-----LFALHPNGKILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             CCEEEEEECC-----------CCeEEEEECCCCcEEEe--ccCCCCcc-----EEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            4456776643           12588899887665331  11110110     11122233 577776666789999998


Q ss_pred             CCceeecccCCCCcccceeEEeeCCeEEEEEe
Q 016239          244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGM  275 (392)
Q Consensus       244 ~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg  275 (392)
                      +.+-  +...+............+|++++++.
T Consensus       104 ~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~  133 (300)
T TIGR03866       104 TRKV--LAEIPVGVEPEGMAVSPDGKIVVNTS  133 (300)
T ss_pred             CCeE--EeEeeCCCCcceEEECCCCCEEEEEe
Confidence            7542  21111111111222334777777664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.72  E-value=4.3  Score=38.31  Aligned_cols=67  Identities=24%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             eeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEE-EEeecCCCCCceeEEEeecCcc
Q 016239          219 SSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVL-AGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v-~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      +....++.|.+.||+++.|-.||+.+.+ ..+............+..-+|.+++ .||.      ++.||  |..+.
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn------~vkVW--Dl~~G  227 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN------SVKVW--DLTTG  227 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC------eEEEE--EecCC
Confidence            3344578899999999999999998884 3332322211112223333545554 4442      78999  76543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=92.65  E-value=5.5  Score=37.49  Aligned_cols=180  Identities=12%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             EEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcc--eEEeecce-EEeecCc----ceEecCCcCceeecCCCCc
Q 016239           65 FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS--CFIGANGF-FFTTTPR----FGFSRILNTSWHLTSPLRF  137 (392)
Q Consensus        65 l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~g~-i~v~gg~----~~ynp~~~~~W~~~~~~~~  137 (392)
                      +++.+|.+..   ..++..|-+.|.  .+..+...+...  +....+|. ..+++|.    +.||.. +.+-.++.++..
T Consensus       227 lllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~~~~~g  300 (514)
T KOG2055|consen  227 LLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKLKPPYG  300 (514)
T ss_pred             eEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceEEEEeecc-ccccccccCCCC
Confidence            4444454432   456666666655  333333222111  11122444 5555553    789998 677777765532


Q ss_pred             --CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCc
Q 016239          138 --SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSS  215 (392)
Q Consensus       138 --~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  215 (392)
                        .+......+..                .+.++++.|..           ..+.+....|+.|-.--.++...+     
T Consensus       301 ~e~~~~e~FeVSh----------------d~~fia~~G~~-----------G~I~lLhakT~eli~s~KieG~v~-----  348 (514)
T KOG2055|consen  301 VEEKSMERFEVSH----------------DSNFIAIAGNN-----------GHIHLLHAKTKELITSFKIEGVVS-----  348 (514)
T ss_pred             cccchhheeEecC----------------CCCeEEEcccC-----------ceEEeehhhhhhhhheeeeccEEe-----
Confidence              12222222221                34455555541           146666777777654333333211     


Q ss_pred             cceeeEEECC-EEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          216 QYLSSALFRG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       216 ~~~~~~~~~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                        ...-..++ +|++.||. +.|+.+|+..+.-...-.-...-.+.+.....++.++..|...+    -+.||.+
T Consensus       349 --~~~fsSdsk~l~~~~~~-GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G----iVNIYd~  416 (514)
T KOG2055|consen  349 --DFTFSSDSKELLASGGT-GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG----IVNIYDG  416 (514)
T ss_pred             --eEEEecCCcEEEEEcCC-ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc----eEEEecc
Confidence              11111244 56666665 58999999888322211111111122222345777666654322    4666633

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.50  E-value=3  Score=36.75  Aligned_cols=93  Identities=13%  Similarity=-0.007  Sum_probs=63.0

Q ss_pred             ECCEEEEEeeccc--EEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          223 FRGRFYVFGIYSF--SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       223 ~~g~ly~~gg~~~--~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      .+|.||.-.|.-+  .|..||+.+++-.....++. ....-.++..+++||.+...      +...++||.++  .+++.
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t--l~~~~  124 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWK------EGTGFVYDPNT--LKKIG  124 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESS------SSEEEEEETTT--TEEEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEec------CCeEEEEcccc--ceEEE
Confidence            4789999987654  78999999998666555555 44555678999999999753      34667789864  56666


Q ss_pred             cCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239          301 IMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE  337 (392)
Q Consensus       301 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~  337 (392)
                      +.+...             -..+.+..++.|++..|.
T Consensus       125 ~~~y~~-------------EGWGLt~dg~~Li~SDGS  148 (264)
T PF05096_consen  125 TFPYPG-------------EGWGLTSDGKRLIMSDGS  148 (264)
T ss_dssp             EEE-SS-------------S--EEEECSSCEEEE-SS
T ss_pred             EEecCC-------------cceEEEcCCCEEEEECCc
Confidence            554331             156777888888888873

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.47  E-value=10  Score=36.06  Aligned_cols=114  Identities=11%  Similarity=-0.010  Sum_probs=59.5

Q ss_pred             EeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC-----ceeecccCCCCcccceeE-Ee
Q 016239          192 YDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH-----VWSEVQTLRPPGVMFSFL-IA  265 (392)
Q Consensus       192 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~-----~W~~i~~~~~~~~~~~~~-~~  265 (392)
                      .|.....|+.+...... +..     ......++.++++|.. +.++.-+-.-.     +|.++..... +.....+ ..
T Consensus       265 ~d~G~~~W~~~~~~~~~-~l~-----~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~-~~~l~~v~~~  336 (398)
T PLN00033        265 WEPGQPYWQPHNRASAR-RIQ-----NMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSR-GFGILDVGYR  336 (398)
T ss_pred             cCCCCcceEEecCCCcc-cee-----eeeEcCCCCEEEEeCC-ceEEEecCCCCcccccceeecccCCC-CcceEEEEEc
Confidence            34444458988633222 221     2222347888887754 34444333334     3454433211 2222222 33


Q ss_pred             eCCeEEEEEeecCCCCCceeEEEeecCccceEeccc---CCHHHHHhhcCCcccCccceeEEE-EeCCEEEEEe
Q 016239          266 SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI---MPHDFLYSLVDTEEDDKFASLKCV-GLGNLIYVFN  335 (392)
Q Consensus       266 ~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~g  335 (392)
                      .++.++++|..       -.+++-....++|+....   ++..+               +.+. ..+++.|+.|
T Consensus       337 ~d~~~~a~G~~-------G~v~~s~D~G~tW~~~~~~~~~~~~l---------------y~v~f~~~~~g~~~G  388 (398)
T PLN00033        337 SKKEAWAAGGS-------GILLRSTDGGKSWKRDKGADNIAANL---------------YSVKFFDDKKGFVLG  388 (398)
T ss_pred             CCCcEEEEECC-------CcEEEeCCCCcceeEccccCCCCcce---------------eEEEEcCCCceEEEe
Confidence            47788888852       234444667789998753   33332               2444 4558899888

>PRK04792 tolB translocation protein TolB; Provisional

Probab=92.00  E-value=12  Score=36.13  Aligned_cols=103  Identities=10%  Similarity=-0.055  Sum_probs=56.4

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ..++.+|..+++.+.+...... ..      .....-+| .|++....  ...|+.+|+.+++++.+..... ..... .
T Consensus       286 ~~Iy~~dl~tg~~~~lt~~~~~-~~------~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~-~  356 (448)
T PRK04792        286 PEIYVVDIATKALTRITRHRAI-DT------EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE-QNLGG-S  356 (448)
T ss_pred             eEEEEEECCCCCeEECccCCCC-cc------ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC-CCcCe-e
Confidence            4688899988888776542211 11      11112244 35444322  2479999999888877642111 11112 2


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      ..-+|+.+++.....   ....||.+|..+...+.+..
T Consensus       357 ~SpDG~~l~~~~~~~---g~~~I~~~dl~~g~~~~lt~  391 (448)
T PRK04792        357 ITPDGRSMIMVNRTN---GKFNIARQDLETGAMQVLTS  391 (448)
T ss_pred             ECCCCCEEEEEEecC---CceEEEEEECCCCCeEEccC
Confidence            333555444433221   25688999988887766543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=91.47  E-value=14  Score=35.53  Aligned_cols=103  Identities=9%  Similarity=-0.067  Sum_probs=55.7

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ..++++|..++..+.+...+.. ..      .....-+| .|++.....  ..|+.+|+.+++++.+..... ...... 
T Consensus       267 ~~Iy~~d~~~~~~~~lt~~~~~-~~------~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~~~~~~-  337 (430)
T PRK00178        267 PEIYVMDLASRQLSRVTNHPAI-DT------EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-YNARPR-  337 (430)
T ss_pred             ceEEEEECCCCCeEEcccCCCC-cC------CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-CccceE-
Confidence            3788999999888776542221 11      11112244 455543222  478999998888776642211 111111 


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      ...+|+.+++......   ...+|.+|..+...+.+..
T Consensus       338 ~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt~  372 (430)
T PRK00178        338 LSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILTD  372 (430)
T ss_pred             ECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEccC
Confidence            2334444433322211   4568888988887776654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=91.31  E-value=4.9  Score=34.84  Aligned_cols=63  Identities=21%  Similarity=0.351  Sum_probs=41.9

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCC--CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP--PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDEL  292 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~--~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~  292 (392)
                      +..+|+.||....++.||..++.  ++.....  .+..++.-..-+|.+|..|.-++    ++.+|+..+.
T Consensus       235 ~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG----TirlWQt~~~  299 (334)
T KOG0278|consen  235 KKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG----TIRLWQTTPG  299 (334)
T ss_pred             CCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc----eEEEEEecCC
Confidence            56899999999999999998774  3322111  11122222345999999985443    7899987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=91.22  E-value=9.6  Score=33.31  Aligned_cols=111  Identities=13%  Similarity=0.051  Sum_probs=66.7

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+|++--.           ...+..+|+.++.-+.+.. +.+         .+++..  +|.+|+....  .+..+|+
T Consensus        11 ~g~l~~~D~~-----------~~~i~~~~~~~~~~~~~~~-~~~---------~G~~~~~~~g~l~v~~~~--~~~~~d~   67 (246)
T PF08450_consen   11 DGRLYWVDIP-----------GGRIYRVDPDTGEVEVIDL-PGP---------NGMAFDRPDGRLYVADSG--GIAVVDP   67 (246)
T ss_dssp             TTEEEEEETT-----------TTEEEEEETTTTEEEEEES-SSE---------EEEEEECTTSEEEEEETT--CEEEEET
T ss_pred             CCEEEEEEcC-----------CCEEEEEECCCCeEEEEec-CCC---------ceEEEEccCCEEEEEEcC--ceEEEec
Confidence            6788887422           2378999998877655432 222         445554  6888888653  4566699


Q ss_pred             CCCceeecccCCC----CcccceeEEeeCCeEEEEEeecCCCCCc--eeEEEeecCccceEec
Q 016239          243 KKHVWSEVQTLRP----PGVMFSFLIASPNMLVLAGMCNAPRGPS--FNLWKVDELSMEFSEI  299 (392)
Q Consensus       243 ~~~~W~~i~~~~~----~~~~~~~~~~~~g~l~v~gg~~~~~~~~--~~v~~~d~~~~~W~~~  299 (392)
                      .+++++.+...+.    ...-+...+.-+|+||+...........  ..+|++++. .+.+.+
T Consensus        68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence            9999988866531    1222334455589998876432221112  679999988 444443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PTZ00421 coronin; Provisional

Probab=90.93  E-value=17  Score=35.67  Aligned_cols=23  Identities=9%  Similarity=0.065  Sum_probs=19.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      +|.+.+.|+.++.|..||+.+++
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCc
Confidence            68888888888999999998765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.81  E-value=4.8  Score=39.87  Aligned_cols=123  Identities=14%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCC-------cccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPP-------GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~-------~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      .+.++.+|.||+... .+.|+++|..+.  .|+.-...+..       ......++..+++||+...       ...++.
T Consensus        63 stPvv~~g~vyv~s~-~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~A  134 (527)
T TIGR03075        63 SQPLVVDGVMYVTTS-YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVA  134 (527)
T ss_pred             cCCEEECCEEEEECC-CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEE
Confidence            456778999999655 357999998765  68764332210       0111224566888887442       246778


Q ss_pred             eecCccc--eEeccc-CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239          289 VDELSME--FSEIAI-MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR  362 (392)
Q Consensus       289 ~d~~~~~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~  362 (392)
                      +|..+.+  |+.-.. .....            ....+-++.+++||+-....+....-.++-+|.++++  ..|+.
T Consensus       135 LDa~TGk~~W~~~~~~~~~~~------------~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~--~lW~~  197 (527)
T TIGR03075       135 LDAKTGKVVWSKKNGDYKAGY------------TITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK--LVWRR  197 (527)
T ss_pred             EECCCCCEEeecccccccccc------------cccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc--eeEec
Confidence            8876554  764321 11100            0122344678888775421111111123344888776  66764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.24  E-value=13  Score=33.02  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             ECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          223 FRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       223 ~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      -.|.+++..-..+.+++||+.+.+|.+-+.+-...+....-|.-.|++++....      ...|-+||+.+.+.+++..
T Consensus       242 pig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~------agai~rfdpeta~ftv~p~  314 (353)
T COG4257         242 PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD------AGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             ccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccc------cCceeecCcccceEEEecC
Confidence            357788775555799999999999999866554444455556667888875421      4567788999999887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=89.60  E-value=20  Score=34.26  Aligned_cols=58  Identities=12%  Similarity=0.041  Sum_probs=39.6

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeeccc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQT  252 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~  252 (392)
                      .+.+||..+..-+.+.+- .. +.     .+-.+.-+|+..+++-....|+++|+.++.-+.+..
T Consensus       383 ~l~iyd~~~~e~kr~e~~-lg-~I-----~av~vs~dGK~~vvaNdr~el~vididngnv~~idk  440 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKD-LG-NI-----EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK  440 (668)
T ss_pred             eEEEEecCCceEEEeeCC-cc-ce-----EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence            688999988887776532 11 11     133344577877777766789999999987776643

>PRK13684 Ycf48-like protein; Provisional

Probab=89.17  E-value=18  Score=33.40  Aligned_cols=92  Identities=12%  Similarity=-0.030  Sum_probs=48.6

Q ss_pred             CCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEE-ECCCCceeecccCCCCcccceeEEeeCCeEEEE
Q 016239          195 HSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSF-DLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLA  273 (392)
Q Consensus       195 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~y-d~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~  273 (392)
                      .-.+|+.+...... .      ........+..++..|..+.++.- |....+|+.+..... ..........+++++++
T Consensus       160 gG~tW~~~~~~~~g-~------~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~-~~l~~i~~~~~g~~~~v  231 (334)
T PRK13684        160 GGKNWEALVEDAAG-V------VRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSS-RRLQSMGFQPDGNLWML  231 (334)
T ss_pred             CCCCceeCcCCCcc-e------EEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCc-ccceeeeEcCCCCEEEE
Confidence            35689988643221 1      133444444455555555666654 555678998855332 22222223447889888


Q ss_pred             EeecCCCCCceeEEEeecCccceEecc
Q 016239          274 GMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       274 gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      |...      ..+..-+....+|+.+.
T Consensus       232 g~~G------~~~~~s~d~G~sW~~~~  252 (334)
T PRK13684        232 ARGG------QIRFNDPDDLESWSKPI  252 (334)
T ss_pred             ecCC------EEEEccCCCCCcccccc
Confidence            7421      11111134556899754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=88.61  E-value=17  Score=32.35  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=57.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeE-EECCEEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSA-LFRGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~i~~yd~~  243 (392)
                      .+..++-||.+           +.+-+|+..+..=+...++... ..+|.. +.+++ +.++.-.+.|..+....-+|++
T Consensus       108 Sg~~VAcGGLd-----------N~Csiy~ls~~d~~g~~~v~r~-l~gHtg-ylScC~f~dD~~ilT~SGD~TCalWDie  174 (343)
T KOG0286|consen  108 SGNFVACGGLD-----------NKCSIYPLSTRDAEGNVRVSRE-LAGHTG-YLSCCRFLDDNHILTGSGDMTCALWDIE  174 (343)
T ss_pred             CCCeEEecCcC-----------ceeEEEecccccccccceeeee-ecCccc-eeEEEEEcCCCceEecCCCceEEEEEcc
Confidence            77888999973           2577888765422222111111 111111 13333 4455444444444567778888


Q ss_pred             CCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          244 KHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       244 ~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +.+=...-.-.......-.+...+++.|+.|+++.    ...+|  |.....
T Consensus       175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~----~aklW--D~R~~~  220 (343)
T KOG0286|consen  175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK----SAKLW--DVRSGQ  220 (343)
T ss_pred             cceEEEEecCCcccEEEEecCCCCCCeEEeccccc----ceeee--eccCcc
Confidence            87543321111111111112223788999998765    56778  655443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=88.59  E-value=24  Score=33.96  Aligned_cols=103  Identities=5%  Similarity=-0.111  Sum_probs=52.5

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ..++++|..++.-+.+...... ..      .....-+|+ |++.....  ..|+.+|..+++.+.+..... ...... 
T Consensus       272 ~~Iy~~d~~~g~~~~lt~~~~~-~~------~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~-~~~~~~-  342 (433)
T PRK04922        272 PEIYVMDLGSRQLTRLTNHFGI-DT------EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN-YNARAS-  342 (433)
T ss_pred             ceEEEEECCCCCeEECccCCCC-cc------ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC-CccCEE-
Confidence            3688899988876665432111 11      111222454 44443222  368899998887776642111 111122 


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      ...+|+.+++.....   ....++.+|..+...+.+..
T Consensus       343 ~SpDG~~Ia~~~~~~---~~~~I~v~d~~~g~~~~Lt~  377 (433)
T PRK04922        343 VSPDGKKIAMVHGSG---GQYRIAVMDLSTGSVRTLTP  377 (433)
T ss_pred             ECCCCCEEEEEECCC---CceeEEEEECCCCCeEECCC
Confidence            233555444332121   13467777887777766543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.44  E-value=17  Score=32.18  Aligned_cols=222  Identities=13%  Similarity=0.087  Sum_probs=114.5

Q ss_pred             eeeeeCCCCceeeCCCCCCCCCcceEE-eecceEEeecC---cceEecCCcCceeecCC-CCcCccCceEEEEEcCCCCc
Q 016239           80 SFAFDPASNSWFHLPPAQEPRAGSCFI-GANGFFFTTTP---RFGFSRILNTSWHLTSP-LRFSRINPLVGVFYDHDRGH  154 (392)
Q Consensus        80 ~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~g~i~v~gg---~~~ynp~~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~  154 (392)
                      +=..||.+.+-...+..... ..|.++ .-+|..++..+   .-++||. +.+-++.+- +..+-.+....++ |+    
T Consensus        85 iGhLdP~tGev~~ypLg~Ga-~Phgiv~gpdg~~Witd~~~aI~R~dpk-t~evt~f~lp~~~a~~nlet~vf-D~----  157 (353)
T COG4257          85 IGHLDPATGEVETYPLGSGA-SPHGIVVGPDGSAWITDTGLAIGRLDPK-TLEVTRFPLPLEHADANLETAVF-DP----  157 (353)
T ss_pred             ceecCCCCCceEEEecCCCC-CCceEEECCCCCeeEecCcceeEEecCc-ccceEEeecccccCCCcccceee-CC----
Confidence            34577777776544332222 223333 34666665532   3678886 454333221 1112222223344 22    


Q ss_pred             ccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc
Q 016239          155 CDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS  234 (392)
Q Consensus       155 ~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~  234 (392)
                                .+.++..|....            .-..|+.++.-+..+. |...-.+     --++.-+|.+|+..-..
T Consensus       158 ----------~G~lWFt~q~G~------------yGrLdPa~~~i~vfpa-PqG~gpy-----Gi~atpdGsvwyaslag  209 (353)
T COG4257         158 ----------WGNLWFTGQIGA------------YGRLDPARNVISVFPA-PQGGGPY-----GICATPDGSVWYASLAG  209 (353)
T ss_pred             ----------CccEEEeecccc------------ceecCcccCceeeecc-CCCCCCc-----ceEECCCCcEEEEeccc
Confidence                      567777764311            1144555554444332 2221111     23444589999987666


Q ss_pred             cEEEEEECCCCceeecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCC
Q 016239          235 FSVSSFDLKKHVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDT  313 (392)
Q Consensus       235 ~~i~~yd~~~~~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~  313 (392)
                      +.|-..|+.+..=++++.+.. ..-....-+...|++.+....      .-.+++||+...+|.+-.- |....      
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs~~sW~eypL-Pgs~a------  276 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPSVTSWIEYPL-PGSKA------  276 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC------CceeeEeCcccccceeeeC-CCCCC------
Confidence            789999999886666655443 111111224457888876321      4567888999999987543 32210      


Q ss_pred             cccCccceeEE-EEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecC
Q 016239          314 EEDDKFASLKC-VGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLP  364 (392)
Q Consensus       314 ~~~~~~~~~~~-~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~  364 (392)
                           + ..+. +-.-+++++.--     ..-.+..+|+++.+    .+.++
T Consensus       277 -----r-pys~rVD~~grVW~sea-----~agai~rfdpeta~----ftv~p  313 (353)
T COG4257         277 -----R-PYSMRVDRHGRVWLSEA-----DAGAIGRFDPETAR----FTVLP  313 (353)
T ss_pred             -----C-cceeeeccCCcEEeecc-----ccCceeecCcccce----EEEec
Confidence                 1 2233 334456665331     11123466999888    77764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.37  E-value=12  Score=37.10  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCC--CeecCCCCCCCCCC--CCCccceeeEEECCEEEEEeecccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPLPADFRS--GYSSQYLSSALFRGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~--~~~~~~~~~~~~~g~ly~~gg~~~~i~~y  240 (392)
                      ++.||+....            ..+..+|..++  .|+.-...+.....  .......+.+..++++|+. ...+.++++
T Consensus        69 ~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~-t~dg~l~AL  135 (527)
T TIGR03075        69 DGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFG-TLDARLVAL  135 (527)
T ss_pred             CCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEE-cCCCEEEEE
Confidence            7888886432            14777777665  47754332211010  0000013346678888864 445789999


Q ss_pred             ECCCC--ceeeccc-CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc--eEe
Q 016239          241 DLKKH--VWSEVQT-LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME--FSE  298 (392)
Q Consensus       241 d~~~~--~W~~i~~-~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~--W~~  298 (392)
                      |.++.  .|+.-.. ..........-++.+++||+..... .....-.|+.||.++.+  |+.
T Consensus       136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       136 DAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ECCCCCEEeecccccccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEec
Confidence            99776  5665322 1111111223355688777643211 11123456677766553  663

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.75  E-value=29  Score=34.01  Aligned_cols=110  Identities=13%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             EEeecceEEeecC---cceEecCCcC--ceeecCCCCcCcc-----CceEEEEEcCCCCcccccCCcccCC-CeEEEEec
Q 016239          105 FIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFSRI-----NPLVGVFYDHDRGHCDLASGFACNL-PKFIVVGG  173 (392)
Q Consensus       105 ~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~iyv~gG  173 (392)
                      .++.++.||+...   ++.+|.. ++  .|+.-...+..+.     ....++.                 + +++|+...
T Consensus        57 Pvv~~g~vy~~~~~g~l~AlD~~-tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~V~v~~~  118 (488)
T cd00216          57 PLVVDGDMYFTTSHSALFALDAA-TGKVLWRYDPKLPADRGCCDVVNRGVAYW-----------------DPRKVFFGTF  118 (488)
T ss_pred             CEEECCEEEEeCCCCcEEEEECC-CChhhceeCCCCCccccccccccCCcEEc-----------------cCCeEEEecC
Confidence            3556888988753   4777877 44  6875332221110     1112233                 5 67776532


Q ss_pred             eeecCcccccccceEEEEEeCCCC--CeecCCCCCC--CCCCCCCccceeeEEECCEEEEEe--------ecccEEEEEE
Q 016239          174 VRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPLPA--DFRSGYSSQYLSSALFRGRFYVFG--------IYSFSVSSFD  241 (392)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~--~~~~~~~~~~~~~~~~~g~ly~~g--------g~~~~i~~yd  241 (392)
                      .            ..+..+|.+++  .|+.-...+.  .....     .+.++.++.+|+-.        +..+.++++|
T Consensus       119 ~------------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~-----ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD  181 (488)
T cd00216         119 D------------GRLVALDAETGKQVWKFGNNDQVPPGYTMT-----GAPTIVKKLVIIGSSGAEFFACGVRGALRAYD  181 (488)
T ss_pred             C------------CeEEEEECCCCCEeeeecCCCCcCcceEec-----CCCEEECCEEEEeccccccccCCCCcEEEEEE
Confidence            2            15778887765  4875533221  00011     34566677777643        2346899999


Q ss_pred             CCCC--ceee
Q 016239          242 LKKH--VWSE  249 (392)
Q Consensus       242 ~~~~--~W~~  249 (392)
                      .++.  .|+.
T Consensus       182 ~~TG~~~W~~  191 (488)
T cd00216         182 VETGKLLWRF  191 (488)
T ss_pred             CCCCceeeEe
Confidence            9765  5765

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.58  E-value=30  Score=33.94  Aligned_cols=54  Identities=11%  Similarity=0.015  Sum_probs=33.1

Q ss_pred             eEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEEeeCCeEEEEEee
Q 016239          220 SALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPNMLVLAGMC  276 (392)
Q Consensus       220 ~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~  276 (392)
                      .+..++.+|+ |...+.|+++|.++.  .|+.-  .+..-.....+.+.+|++|+.-..
T Consensus       402 ~~~~g~~v~~-g~~dG~l~ald~~tG~~lW~~~--~~~~~~a~P~~~~~~g~~yv~~~~  457 (488)
T cd00216         402 LATAGNLVFA-GAADGYFRAFDATTGKELWKFR--TPSGIQATPMTYEVNGKQYVGVMV  457 (488)
T ss_pred             eEecCCeEEE-ECCCCeEEEEECCCCceeeEEE--CCCCceEcCEEEEeCCEEEEEEEe
Confidence            3455566665 446789999999876  46532  222222334444679999987643

The alignment model contains an 8-bladed beta-propeller.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=87.53  E-value=11  Score=35.45  Aligned_cols=123  Identities=17%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             eeeEEE-CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          218 LSSALF-RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       218 ~~~~~~-~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      .++++. +|.|+..|..++.+-.||+++..  .+..+|........+...++--|++-..+..   ++.+|  |..... 
T Consensus       351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~---~V~lw--DLRKl~-  422 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDG---SVKLW--DLRKLK-  422 (506)
T ss_pred             EEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCC---eEEEE--Eehhhc-
Confidence            344443 78888888888889999998876  5555555222222233333444444443332   58888  554332 


Q ss_pred             EecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecCCCCC
Q 016239          297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPS  368 (392)
Q Consensus       297 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~  368 (392)
                       .+..++..   .+.+.       ..-.+-..++..+++|     ..+.++.++..+..    |+.+..++.
T Consensus       423 -n~kt~~l~---~~~~v-------~s~~fD~SGt~L~~~g-----~~l~Vy~~~k~~k~----W~~~~~~~~  474 (506)
T KOG0289|consen  423 -NFKTIQLD---EKKEV-------NSLSFDQSGTYLGIAG-----SDLQVYICKKKTKS----WTEIKELAD  474 (506)
T ss_pred             -ccceeecc---ccccc-------eeEEEcCCCCeEEeec-----ceeEEEEEeccccc----ceeeehhhh
Confidence             22222211   01110       1222334455666665     33445666777777    999987763

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=87.34  E-value=10  Score=34.82  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=55.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCC-eecCCCCCCCCCCCCCccceeeEEECCEEEEEeeccc--EEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS-WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSF--SVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~--~i~~yd  241 (392)
                      ++++.+..|.             .+.+|+...++ +...+.+..+. .     ..+...+++.|++ |...+  .++.|+
T Consensus        98 ~~~lv~~~g~-------------~l~v~~l~~~~~l~~~~~~~~~~-~-----i~sl~~~~~~I~v-gD~~~sv~~~~~~  157 (321)
T PF03178_consen   98 NGRLVVAVGN-------------KLYVYDLDNSKTLLKKAFYDSPF-Y-----ITSLSVFKNYILV-GDAMKSVSLLRYD  157 (321)
T ss_dssp             TTEEEEEETT-------------EEEEEEEETTSSEEEEEEE-BSS-S-----EEEEEEETTEEEE-EESSSSEEEEEEE
T ss_pred             CCEEEEeecC-------------EEEEEEccCcccchhhheecceE-E-----EEEEeccccEEEE-EEcccCEEEEEEE
Confidence            7776665554             58888887777 77776554442 2     1455566776664 44333  556778


Q ss_pred             CCCCceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeec
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      ....+...+..-.......+ +..+ ++..+ +++....   ++.++++++
T Consensus       158 ~~~~~l~~va~d~~~~~v~~-~~~l~d~~~~-i~~D~~g---nl~~l~~~~  203 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTA-AEFLVDEDTI-IVGDKDG---NLFVLRYNP  203 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEE-EEEE-SSSEE-EEEETTS---EEEEEEE-S
T ss_pred             ccCCEEEEEEecCCCccEEE-EEEecCCcEE-EEEcCCC---eEEEEEECC
Confidence            87777777765443233223 2333 55533 3333221   567777764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PTZ00420 coronin; Provisional

Probab=87.21  E-value=24  Score=35.30  Aligned_cols=23  Identities=13%  Similarity=0.106  Sum_probs=19.1

Q ss_pred             CCEEEEEeecccEEEEEECCCCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      +|.+++.++..+.|..||+.+.+
T Consensus       178 dG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        178 KGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CCCEEEEEecCCEEEEEECCCCc
Confidence            68888888878899999998764

>cd00094 HX Hemopexin-like repeats

Probab=87.17  E-value=17  Score=30.61  Aligned_cols=108  Identities=13%  Similarity=0.092  Sum_probs=57.2

Q ss_pred             CEEEEEeecccEEEEEECCCCcee---eccc--CCC-CcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWS---EVQT--LRP-PGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~---~i~~--~~~-~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~  297 (392)
                      |++|+|-|.  ..++||..+....   .+..  .++ .....+++... ++++|++.|        ...|+||...++- 
T Consensus        63 ~~~yfFkg~--~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v-  131 (194)
T cd00094          63 GKIYFFKGD--KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKM-  131 (194)
T ss_pred             CEEEEECCC--EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccc-
Confidence            899999774  6888987642221   1111  111 02223333333 689999975        4678888755432 


Q ss_pred             ecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCC
Q 016239          298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESD  354 (392)
Q Consensus       298 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~  354 (392)
                       ....|......+.+...   .-..+....++++|++-|..       ++++|..+.
T Consensus       132 -~~~yP~~i~~~w~g~p~---~idaa~~~~~~~~yfF~g~~-------y~~~d~~~~  177 (194)
T cd00094         132 -DPGYPKLIETDFPGVPD---KVDAAFRWLDGYYYFFKGDQ-------YWRFDPRSK  177 (194)
T ss_pred             -cCCCCcchhhcCCCcCC---CcceeEEeCCCcEEEEECCE-------EEEEeCccc
Confidence             22234444433433321   11233334448999998742       355565544

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=86.76  E-value=25  Score=32.17  Aligned_cols=131  Identities=15%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             CC-EEEEEeecccEEEEEECCCCceeecccCC-CCcccceeEEee-CCeE-EEEEeecCCCCCceeEEEeecCccceEec
Q 016239          224 RG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLR-PPGVMFSFLIAS-PNML-VLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       224 ~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~-~~~~~~~~~~~~-~g~l-~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      ++ .|.+..=..+.|..|+...+..+...+.. +++.+--.++.. ++++ |++.--.    .++.+|.||....+.+++
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEEe
Confidence            45 34444333468999999877665543221 112221123333 6666 7876432    279999999987777776


Q ss_pred             cc---CCHHHHHhhcCCcccCccceeEE--EEeCCEEEEEeccccCCCCeEEEEeecCCCccce--eeeecCCCCCcc
Q 016239          300 AI---MPHDFLYSLVDTEEDDKFASLKC--VGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRC--SWRRLPQLPSPV  370 (392)
Q Consensus       300 ~~---~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~--~W~~~~~~p~~~  370 (392)
                      +.   ||..    |.+..     ...++  ...|..||+.+-   +..++.++.+|+.+++++-  .|...+..|...
T Consensus       231 Q~i~tlP~d----F~g~~-----~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F  296 (346)
T COG2706         231 QTIDTLPED----FTGTN-----WAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF  296 (346)
T ss_pred             eeeccCccc----cCCCC-----ceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence            65   5655    43332     12222  235667777763   3346777788877665222  245556667543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.98  E-value=27  Score=31.78  Aligned_cols=199  Identities=10%  Similarity=0.033  Sum_probs=84.2

Q ss_pred             eCCCCceeeCCCCC-CC-CCcc-eEEeecceEEeecCc-ceEecC-CcCceeecCC-CCcCccCceEEEEEcCCCCcccc
Q 016239           84 DPASNSWFHLPPAQ-EP-RAGS-CFIGANGFFFTTTPR-FGFSRI-LNTSWHLTSP-LRFSRINPLVGVFYDHDRGHCDL  157 (392)
Q Consensus        84 d~~~~~W~~~~~~~-~~-r~~~-~~~~~~g~i~v~gg~-~~ynp~-~~~~W~~~~~-~~~~r~~~~~~~~~~~~~~~~~~  157 (392)
                      +-.-.+|....... .+ ...+ ++...++..|++|.. .++-.. -..+|++++- .+.+-..+.+..+.         
T Consensus        43 ~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~---------  113 (302)
T PF14870_consen   43 TDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALG---------  113 (302)
T ss_dssp             SSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEE---------
T ss_pred             CCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcC---------
Confidence            33456688765322 22 1222 333346677777643 223221 1459998862 23333344455442         


Q ss_pred             cCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccE
Q 016239          158 ASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFS  236 (392)
Q Consensus       158 ~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~  236 (392)
                             ++.+.+++..            ..++.=.=.-.+|+.+..-... .      ...... -+|.+..++...+.
T Consensus       114 -------~~~~~l~~~~------------G~iy~T~DgG~tW~~~~~~~~g-s------~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen  114 -------DGSAELAGDR------------GAIYRTTDGGKTWQAVVSETSG-S------INDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             -------TTEEEEEETT--------------EEEESSTTSSEEEEE-S-----------EEEEEE-TTS-EEEEETTSSE
T ss_pred             -------CCcEEEEcCC------------CcEEEeCCCCCCeeEcccCCcc-e------eEeEEECCCCcEEEEECcccE
Confidence                   5566666532            1344433345689987532221 1      122222 35665556655556


Q ss_pred             EEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEee--cCccceEecccCCHHHHHhhcCCc
Q 016239          237 VSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD--ELSMEFSEIAIMPHDFLYSLVDTE  314 (392)
Q Consensus       237 i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d--~~~~~W~~~~~~p~~~~~~~~~~~  314 (392)
                      +...|+....|+........+.... ...-++.|+++.. .      -.++.-+  ....+|.+-. .|....       
T Consensus       168 ~~s~~~G~~~w~~~~r~~~~riq~~-gf~~~~~lw~~~~-G------g~~~~s~~~~~~~~w~~~~-~~~~~~-------  231 (302)
T PF14870_consen  168 YSSWDPGQTTWQPHNRNSSRRIQSM-GFSPDGNLWMLAR-G------GQIQFSDDPDDGETWSEPI-IPIKTN-------  231 (302)
T ss_dssp             EEEE-TT-SS-EEEE--SSS-EEEE-EE-TTS-EEEEET-T------TEEEEEE-TTEEEEE---B--TTSS--------
T ss_pred             EEEecCCCccceEEccCccceehhc-eecCCCCEEEEeC-C------cEEEEccCCCCcccccccc-CCcccC-------
Confidence            6688999999998866544333322 2445788888761 1      1232223  4566788722 222110       


Q ss_pred             ccCccceeEEEE-eCCEEEEEec
Q 016239          315 EDDKFASLKCVG-LGNLIYVFNE  336 (392)
Q Consensus       315 ~~~~~~~~~~~~-~~~~i~v~gg  336 (392)
                         ++....++. .++.+++.||
T Consensus       232 ---~~~~ld~a~~~~~~~wa~gg  251 (302)
T PF14870_consen  232 ---GYGILDLAYRPPNEIWAVGG  251 (302)
T ss_dssp             ----S-EEEEEESSSS-EEEEES
T ss_pred             ---ceeeEEEEecCCCCEEEEeC
Confidence               122344444 4589999887

>cd00094 HX Hemopexin-like repeats

Probab=85.31  E-value=21  Score=29.99  Aligned_cols=62  Identities=16%  Similarity=0.115  Sum_probs=37.7

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----ccc-CCCCc-ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQT-LRPPG-VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~~-~~~~~-~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++++|+|.|  +..+.||..+++...     +.. .+... ...+++...++++|++-|        ...|+||..+++
T Consensus       110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g--------~~y~~~d~~~~~  178 (194)
T cd00094         110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG--------DQYWRFDPRSKE  178 (194)
T ss_pred             CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEEC--------CEEEEEeCccce
Confidence            689999988  478899986665421     111 11111 122333333489999874        478899987665

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=85.29  E-value=37  Score=32.71  Aligned_cols=102  Identities=9%  Similarity=-0.113  Sum_probs=51.4

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ..++++|..++.-+.+...+.. ..      .....-+|+ |++....  ...|+.+|..+...+.+..... ...... 
T Consensus       270 ~~Iy~~d~~~~~~~~Lt~~~~~-~~------~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~-  340 (435)
T PRK05137        270 TDIYTMDLRSGTTTRLTDSPAI-DT------SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG-RYSTPV-  340 (435)
T ss_pred             ceEEEEECCCCceEEccCCCCc-cC------ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC-cccCeE-
Confidence            3688889888876666542221 11      112222444 4433222  2478999988776666543211 111122 


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      ...+|+.+++......   ...++.+|..+...+.+.
T Consensus       341 ~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~lt  374 (435)
T PRK05137        341 WSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERILT  374 (435)
T ss_pred             ECCCCCEEEEEEcCCC---ceEEEEEECCCCceEecc
Confidence            3335554444332211   357777887666555443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.27  E-value=33  Score=32.16  Aligned_cols=154  Identities=8%  Similarity=-0.002  Sum_probs=82.4

Q ss_pred             EeecceEEee--cC-cceEecCCcC-ceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccc
Q 016239          106 IGANGFFFTT--TP-RFGFSRILNT-SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLV  181 (392)
Q Consensus       106 ~~~~g~i~v~--gg-~~~ynp~~~~-~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~  181 (392)
                      +..+|.+|+.  .| .+.+|+.+.. .|+...........-....-                 +++||+-...       
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-----------------~G~i~~g~~~-------  120 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-----------------DGKIYVGSWD-------  120 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-----------------CCeEEEeccc-------
Confidence            5668999985  34 5788998433 48643222001111111122                 5676665432       


Q ss_pred             ccccceEEEEEeCCC--CCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCc
Q 016239          182 DIEDRLAVEIYDPHS--DSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPG  257 (392)
Q Consensus       182 ~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~  257 (392)
                           ...++||..+  ..|+.-.... . +..     ..++..++.+|+-. ..+.++++|..+.  .|+.-...+...
T Consensus       121 -----g~~y~ld~~~G~~~W~~~~~~~-~-~~~-----~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~  187 (370)
T COG1520         121 -----GKLYALDASTGTLVWSRNVGGS-P-YYA-----SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSL  187 (370)
T ss_pred             -----ceEEEEECCCCcEEEEEecCCC-e-EEe-----cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCcccc
Confidence                 1578888743  4587654431 1 222     45566677888765 4468899988755  676433221111


Q ss_pred             ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEeccc
Q 016239          258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSEIAI  301 (392)
Q Consensus       258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~  301 (392)
                      .........++.+|+....    . ...+|.+|..+.  .|++...
T Consensus       188 ~~~~~~~~~~~~vy~~~~~----~-~~~~~a~~~~~G~~~w~~~~~  228 (370)
T COG1520         188 SIYGSPAIASGTVYVGSDG----Y-DGILYALNAEDGTLKWSQKVS  228 (370)
T ss_pred             ccccCceeecceEEEecCC----C-cceEEEEEccCCcEeeeeeee
Confidence            1122223556777765421    1 237888887544  4875433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=85.01  E-value=25  Score=30.63  Aligned_cols=139  Identities=11%  Similarity=0.155  Sum_probs=72.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceee-cccCCC----Cccccee
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRP----PGVMFSF  262 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~----~~~~~~~  262 (392)
                      .+.++|..++...... +|.....-    ..-.+.-+|++.+..-..+..+++++-+.+... +.+...    .++....
T Consensus       147 ~irvWDl~~~~c~~~l-iPe~~~~i----~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHEL-IPEDDTSI----QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             cEEEEEccCCcccccc-CCCCCcce----eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE
Confidence            6999999988765432 23221110    123444577777766666788888887654322 222111    1222222


Q ss_pred             EEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCC
Q 016239          263 LIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKY  342 (392)
Q Consensus       263 ~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~  342 (392)
                      +..-+++.+...+.+.    +..||..  ++. .+..-.+...            .|....|+...+--|++-|..+.. 
T Consensus       222 ~lSPd~k~lat~ssdk----tv~iwn~--~~~-~kle~~l~gh------------~rWvWdc~FS~dg~YlvTassd~~-  281 (311)
T KOG0315|consen  222 LLSPDVKYLATCSSDK----TVKIWNT--DDF-FKLELVLTGH------------QRWVWDCAFSADGEYLVTASSDHT-  281 (311)
T ss_pred             EECCCCcEEEeecCCc----eEEEEec--CCc-eeeEEEeecC------------CceEEeeeeccCccEEEecCCCCc-
Confidence            3334666666555443    6788844  333 2211111111            145777877777667766544332 


Q ss_pred             CeEEEEe-ecCCCc
Q 016239          343 PACVCEI-GTESDK  355 (392)
Q Consensus       343 ~~~~~~~-d~~~~~  355 (392)
                          ..+ |+++++
T Consensus       282 ----~rlW~~~~~k  291 (311)
T KOG0315|consen  282 ----ARLWDLSAGK  291 (311)
T ss_pred             ----eeecccccCc
Confidence                455 555555

>PRK00178 tolB translocation protein TolB; Provisional

Probab=84.27  E-value=40  Score=32.30  Aligned_cols=176  Identities=6%  Similarity=-0.060  Sum_probs=87.4

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEeecc-eEEee---cC---cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG-FFFTT---TP---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH  150 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g-~i~v~---gg---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~  150 (392)
                      .+++.+|..+++-..+......-. .....-+| .|++.   +|   .+++|.. +++.+++......  . ....+   
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~lt~~~~~--~-~~~~~---  294 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSRVTNHPAI--D-TEPFW---  294 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEcccCCCC--c-CCeEE---
Confidence            468888988887766654432111 11122233 44432   22   3777888 6766655432211  1 11111   


Q ss_pred             CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEE
Q 016239          151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYV  229 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~  229 (392)
                                 ..++.+|+.....         .....++.+|..++.++.+....   ...    ......-+| .|++
T Consensus       295 -----------spDg~~i~f~s~~---------~g~~~iy~~d~~~g~~~~lt~~~---~~~----~~~~~Spdg~~i~~  347 (430)
T PRK00178        295 -----------GKDGRTLYFTSDR---------GGKPQIYKVNVNGGRAERVTFVG---NYN----ARPRLSADGKTLVM  347 (430)
T ss_pred             -----------CCCCCEEEEEECC---------CCCceEEEEECCCCCEEEeecCC---CCc----cceEECCCCCEEEE
Confidence                       1224456554322         11236888898888877664211   111    011112233 4555


Q ss_pred             Eeecc--cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          230 FGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       230 ~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .....  ..|+.+|+.+...+.+.....  .... ....+|+.+++......   ...++.++....
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~p-~~spdg~~i~~~~~~~g---~~~l~~~~~~g~  408 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRILTDTSL--DESP-SVAPNGTMLIYATRQQG---RGVLMLVSINGR  408 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEEccCCCC--CCCc-eECCCCCEEEEEEecCC---ceEEEEEECCCC
Confidence            43222  368999999988777654321  1122 24457777666543321   345666666543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=83.71  E-value=29  Score=30.20  Aligned_cols=114  Identities=18%  Similarity=0.150  Sum_probs=63.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~i~~yd~~  243 (392)
                      .+.|+..||..            .++..|.++++-+..-.       +++..-|+.+.-+.. =.+.|+.++.+-.+|.+
T Consensus       126 enSi~~AgGD~------------~~y~~dlE~G~i~r~~r-------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k  186 (325)
T KOG0649|consen  126 ENSILFAGGDG------------VIYQVDLEDGRIQREYR-------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK  186 (325)
T ss_pred             CCcEEEecCCe------------EEEEEEecCCEEEEEEc-------CCcceeeeeeecccCcceeecCCCccEEEEecc
Confidence            78888888852            47777888887665421       111223666653322 23347777899999999


Q ss_pred             CCceeecccCC--C------CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239          244 KHVWSEVQTLR--P------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD  305 (392)
Q Consensus       244 ~~~W~~i~~~~--~------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~  305 (392)
                      +.+-..+-.+-  +      -+....++....+-|.+-||      +...+|  +....+-+.+-++|..
T Consensus       187 t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslw--hLrsse~t~vfpipa~  248 (325)
T KOG0649|consen  187 TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLW--HLRSSESTCVFPIPAR  248 (325)
T ss_pred             ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEE--eccCCCceEEEecccc
Confidence            88765542211  1      11112233333333333333      268889  5455555666666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=82.17  E-value=47  Score=31.53  Aligned_cols=102  Identities=11%  Similarity=-0.109  Sum_probs=55.6

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeec--ccEEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIY--SFSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~--~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ..++.+|..++..+.+...... ..      .....-+| .|++....  ...|+.+|..+.++..+.....  ......
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~-~~------~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~--~~~~~~  328 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGI-DT------EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG--YNASPS  328 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCC-CC------CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC--CccCeE
Confidence            3688889888877766532221 11      11111244 45444322  2379999998887766543211  111122


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      ...+|+.+++.....   ....|+.+|..+..++.+.
T Consensus       329 ~spdg~~i~~~~~~~---~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       329 WSPDGDLIAFVHREG---GGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             ECCCCCEEEEEEccC---CceEEEEEeCCCCCeEEcc
Confidence            334666666654322   2567888898876666554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=82.08  E-value=49  Score=31.73  Aligned_cols=105  Identities=10%  Similarity=0.035  Sum_probs=60.8

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECC-EEEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRG-RFYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ..++.+|..++.++.+...+.. ..      .....-+| +||+.....  ..|+.+|+.+++.+.+.....   ... .
T Consensus       257 ~~Iy~~dl~~g~~~~LT~~~~~-d~------~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~-~  325 (419)
T PRK04043        257 PDIYLYDTNTKTLTQITNYPGI-DV------NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNS-S  325 (419)
T ss_pred             cEEEEEECCCCcEEEcccCCCc-cC------ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCc-e
Confidence            4799999989988888654321 11      11122234 566664322  379999999888766643211   122 2


Q ss_pred             EeeCCeEEEEEeecCC-C--CCceeEEEeecCccceEecccC
Q 016239          264 IASPNMLVLAGMCNAP-R--GPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~-~--~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      ..-+|+.+++...... .  ....++|.+|.++..++.+..-
T Consensus       326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~  367 (419)
T PRK04043        326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN  367 (419)
T ss_pred             ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence            3445554444332221 1  1236899999988888887763

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=81.19  E-value=41  Score=30.22  Aligned_cols=89  Identities=19%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe-e
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-S  266 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~  266 (392)
                      ++..||..++.-+..-....+        ...+++.+..=-+.||..+.|-.||+.+..=..+..-...-   ..+.- .
T Consensus        36 slrlYdv~~~~l~~~~~~~~p--------lL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i---~ci~~~~  104 (323)
T KOG1036|consen   36 SLRLYDVPANSLKLKFKHGAP--------LLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGI---RCIEYSY  104 (323)
T ss_pred             cEEEEeccchhhhhheecCCc--------eeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCce---EEEEeec
Confidence            577888877732221111111        13455667666677888999999999888755553322111   11111 1


Q ss_pred             CCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          267 PNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ....++.|+.++    ++.+|  |+..
T Consensus       105 ~~~~vIsgsWD~----~ik~w--D~R~  125 (323)
T KOG1036|consen  105 EVGCVISGSWDK----TIKFW--DPRN  125 (323)
T ss_pred             cCCeEEEcccCc----cEEEE--eccc
Confidence            233345555544    78999  7765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=80.86  E-value=64  Score=32.25  Aligned_cols=150  Identities=10%  Similarity=0.061  Sum_probs=77.8

Q ss_pred             cceEEeecCc-----ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccc
Q 016239          109 NGFFFTTTPR-----FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDI  183 (392)
Q Consensus       109 ~g~i~v~gg~-----~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~  183 (392)
                      +|.+.+++-+     +..+|.-.-+-+.+..++..+...+.....              .++++++++.-          
T Consensus       393 dg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft--------------id~~k~~~~s~----------  448 (691)
T KOG2048|consen  393 DGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT--------------IDKNKLFLVSK----------  448 (691)
T ss_pred             CCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEE--------------ecCceEEEEec----------
Confidence            5544444432     444443112445666777766554433331              11778887751          


Q ss_pred             ccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCC-Cccccee
Q 016239          184 EDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP-PGVMFSF  262 (392)
Q Consensus       184 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~-~~~~~~~  262 (392)
                       ...+++.++.++.+-+++.+......... -.......+++.|-++++ .+.|++||+++.+-..+..... .-...+.
T Consensus       449 -~~~~le~~el~~ps~kel~~~~~~~~~~~-I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~~~~l~~rln~~vTa~~~  525 (691)
T KOG2048|consen  449 -NIFSLEEFELETPSFKELKSIQSQAKCPS-ISRLVVSSDGNYIAAIST-RGQIFVYNLETLESHLLKVRLNIDVTAAAF  525 (691)
T ss_pred             -ccceeEEEEecCcchhhhhccccccCCCc-ceeEEEcCCCCEEEEEec-cceEEEEEcccceeecchhccCcceeeeec
Confidence             23367777777777776654332211110 001112223556666664 5689999999998777654333 1111111


Q ss_pred             EEeeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239          263 LIASPNMLVLAGMCNAPRGPSFNLWKVDEL  292 (392)
Q Consensus       263 ~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~  292 (392)
                      .....++|.+.-.       ..++++||.+
T Consensus       526 ~~~~~~~lvvats-------~nQv~efdi~  548 (691)
T KOG2048|consen  526 SPFVRNRLVVATS-------NNQVFEFDIE  548 (691)
T ss_pred             cccccCcEEEEec-------CCeEEEEecc
Confidence            1133556655432       4577777763

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=80.60  E-value=23  Score=27.46  Aligned_cols=86  Identities=13%  Similarity=0.113  Sum_probs=55.0

Q ss_pred             eeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC--CHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCC-
Q 016239          265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM--PHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKK-  341 (392)
Q Consensus       265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~-  341 (392)
                      -.+|-||-+...  .......|-+||..+++|+.+...  +..            .......+..+|+|.++....... 
T Consensus         3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~------------~~~~~~L~~~~G~L~~v~~~~~~~~   68 (129)
T PF08268_consen    3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYS------------SDCSSTLIEYKGKLALVSYNDQGEP   68 (129)
T ss_pred             EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeecc------------ccCccEEEEeCCeEEEEEecCCCCc
Confidence            358889877754  222256777889999999876653  111            134677888999999987543322 


Q ss_pred             CCeEEEEe-ecCCCccceeeeecCC-CCC
Q 016239          342 YPACVCEI-GTESDKCRCSWRRLPQ-LPS  368 (392)
Q Consensus       342 ~~~~~~~~-d~~~~~~~~~W~~~~~-~p~  368 (392)
                      ....+.-+ |.+..+    |...-- +|.
T Consensus        69 ~~~~iWvLeD~~k~~----Wsk~~~~lp~   93 (129)
T PF08268_consen   69 DSIDIWVLEDYEKQE----WSKKHIVLPP   93 (129)
T ss_pred             ceEEEEEeeccccce----EEEEEEECCh
Confidence            33455555 776767    986633 443

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=80.21  E-value=16  Score=32.50  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=22.5

Q ss_pred             CCCCCCCCCcceEEee--cc-e-EEeecCcceEec---CCcCceeecC
Q 016239           93 LPPAQEPRAGSCFIGA--NG-F-FFTTTPRFGFSR---ILNTSWHLTS  133 (392)
Q Consensus        93 ~~~~~~~r~~~~~~~~--~g-~-i~v~gg~~~ynp---~~~~~W~~~~  133 (392)
                      +...|.+|++|++.+.  .| . ..++||.- |-|   .+|..|..+-
T Consensus        81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRS-Y~P~~qRTTenWNsVv  127 (337)
T PF03089_consen   81 VGDVPEARYGHTINVVHSRGKTACVLFGGRS-YMPPGQRTTENWNSVV  127 (337)
T ss_pred             cCCCCcccccceEEEEEECCcEEEEEECCcc-cCCccccchhhcceec
Confidence            3678999999965543  33 3 44556631 222   2345676553

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-11
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-12
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-11
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	6e-12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-11
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	7e-12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	5e-11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	9e-07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	9e-11
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	5e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-08
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	4e-07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 48/193 (24%)

Query: 82  AFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTT---TPRFGFSRILNT---------SW 129
           A++P++ +W  L   Q PR+G       G  +           +   +           W
Sbjct: 43  AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102

Query: 130 HLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLA- 188
              +P+   R    VGV                        VGG                
Sbjct: 103 SPCAPMSVPRNRIGVGVIDG-----------------HIYAVGGS-------HGCIHHNS 138

Query: 189 VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLK 243
           VE Y+P  D W L  P+    R G     +  A+     Y  G         S   +  +
Sbjct: 139 VERYEPERDEWHLVAPMLT-RRIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192

Query: 244 KHVWSEVQTLRPP 256
           ++ W  +  +   
Sbjct: 193 RNEWRMITAMNTI 205

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 39/190 (20%), Positives = 60/190 (31%), Gaps = 48/190 (25%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGF--SRILNT---------SWHL 131
           ++P  + W  + P    R G      N   +      GF  +  LN+          W +
Sbjct: 142 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG---GFDGTNRLNSAECYYPERNEWRM 198

Query: 132 TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEI 191
            + +   R             G         C L   I        GG    +   +VE 
Sbjct: 199 ITAMNTIR------------SGAG------VCVLHNCIYA-----AGGYDGQDQLNSVER 235

Query: 192 YDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLKKHV 246
           YD  +++W    P+    RS      L   + +GR YV G      +  SV  +D     
Sbjct: 236 YDVETETWTFVAPMKHR-RSA-----LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289

Query: 247 WSEVQTLRPP 256
           WSEV  +   
Sbjct: 290 WSEVTRMTSG 299

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 46/187 (24%)

Query: 86  ASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFG--FSRILNT---------SWHLTSP 134
           +S+   H      PR GS         +T     G  F + L+          +W   + 
Sbjct: 2   SSHHHHHHSSGLVPR-GSHAPKVGRLIYT----AGGYFRQSLSYLEAYNPSNGTWLRLAD 56

Query: 135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDP 194
           L+  R      V                        VGG           D  A++ Y+P
Sbjct: 57  LQVPRSGLAGCVVGG-----------------LLYAVGG--RNNSPDGNTDSSALDCYNP 97

Query: 195 HSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLKKHVWSE 249
            ++ W  C P+    R+      +   +  G  Y  G     I+  SV  ++ ++  W  
Sbjct: 98  MTNQWSPCAPMSVP-RN-----RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 151

Query: 250 VQTLRPP 256
           V  +   
Sbjct: 152 VAPMLTR 158

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 35/146 (23%)

Query: 71  HNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNT--- 127
            + ++R N +  + P  N W  +      R+G+     +   +      G    LN+   
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVER 235

Query: 128 ------SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLV 181
                 +W   +P++  R    + V                    +  V+GG        
Sbjct: 236 YDVETETWTFVAPMKHRRSALGITVHQG-----------------RIYVLGG-------Y 271

Query: 182 DIEDRLA-VEIYDPHSDSWELCPPLP 206
           D    L  VE YDP +D+W     + 
Sbjct: 272 DGHTFLDSVECYDPDTDTWSEVTRMT 297

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 46/247 (18%), Positives = 75/247 (30%), Gaps = 77/247 (31%)

Query: 66  FLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPR--AGSCFI--------GANGFFFTT 115
           F  G  N S R     ++DP  + W  +   ++ R   G+  +        G +G     
Sbjct: 65  FAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG----- 119

Query: 116 TPRFGFSRILNT---------SWHLTSPLRFSRINPLVGVF---------YDHDRGHC-- 155
                 S  L++          W   +P+   R +  VGV          YD     C  
Sbjct: 120 ------STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLS 173

Query: 156 -------------DLA------SGFACNLPKFIVVGGVRF-IGGLVDIEDRLAVEIYDPH 195
                         +A      SG         V+  + + +GG      R +VE+YDP 
Sbjct: 174 TVECYNATTNEWTYIAEMSTRRSGAGV-----GVLNNLLYAVGGHDGPLVRKSVEVYDPT 228

Query: 196 SDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLKKHVWSEV 250
           +++W     +    R              G  YV G         SV  ++     W+ V
Sbjct: 229 TNAWRQVADMNMC-RRN-----AGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282

Query: 251 QTLRPPG 257
            +    G
Sbjct: 283 SSCMSTG 289

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 31/193 (16%), Positives = 51/193 (26%), Gaps = 52/193 (26%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGF--SRILNT---------SWHL 131
           +D     W  +      R  +  +   G  F      GF  S  + T          W  
Sbjct: 35  YDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVG---GFNGSLRVRTVDSYDPVKDQWTS 91

Query: 132 TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLA-VE 190
            + +R  R      V                        VGG        D    L+ VE
Sbjct: 92  VANMRDRRSTLGAAVLNG-----------------LLYAVGGF-------DGSTGLSSVE 127

Query: 191 IYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-------IYSFSVSSFDLK 243
            Y+  S+ W    P+    RS      +   +  G  Y  G           +V  ++  
Sbjct: 128 AYNIKSNEWFHVAPMNTR-RSS-----VGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181

Query: 244 KHVWSEVQTLRPP 256
            + W+ +  +   
Sbjct: 182 TNEWTYIAEMSTR 194

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 162 ACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSA 221
             NLPK +VV G +    +        VE YD   + W     LP+  R           
Sbjct: 11  PMNLPKLMVVVGGQAPKAIRS------VECYDFKEERWHQVAELPSR-RCRA-----GMV 58

Query: 222 LFRGRFYVFG-----IYSFSVSSFDLKKHVWSEV 250
              G  +  G     +   +V S+D  K  W+ V
Sbjct: 59  YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 27/160 (16%), Positives = 45/160 (28%), Gaps = 52/160 (32%)

Query: 83  FDPASNSWFHLPPAQEPRAGSC------FI----GANGFFFTTT-----PRFGFSRILNT 127
           ++  +N W ++      R+G+        +    G +G     +     P          
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN------- 230

Query: 128 SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRL 187
           +W   + +   R N  V                         VVGG        D    L
Sbjct: 231 AWRQVADMNMCRRNAGVCAVNG-----------------LLYVVGGD-------DGSCNL 266

Query: 188 A-VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR 226
           A VE Y+P +D W +     +  RS          +   R
Sbjct: 267 ASVEYYNPTTDKWTVVSSCMSTGRSY-----AGVTVIDKR 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 47/192 (24%)

Query: 82  AFDPASNSWFHLPPAQEPRAGSCFIGANGFFFT-----------TTPRFGFSRILNTSWH 130
            +DP +  W  LP     R     +  +   +            +     ++   +  W+
Sbjct: 35  KYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94

Query: 131 LTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLA-V 189
             +P+   R         D                    V GG        D   R   +
Sbjct: 95  SVAPMNVRRGLAGATTLGD-----------------MIYVSGGF-------DGSRRHTSM 130

Query: 190 EIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLKK 244
           E YDP+ D W +   +    R G         +  G  Y  G         SV  +D   
Sbjct: 131 ERYDPNIDQWSMLGDMQT-AREG-----AGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184

Query: 245 HVWSEVQTLRPP 256
             W+ V  +   
Sbjct: 185 GHWTNVTPMATK 196

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 37/187 (19%), Positives = 59/187 (31%), Gaps = 48/187 (25%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGF--SRILNT---------SWHL 131
           +DP  + W  L   Q  R G+  + A+G  +      G+    ILN+          W  
Sbjct: 133 YDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG---GYDGLNILNSVEKYDPHTGHWTN 189

Query: 132 TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEI 191
            +P+   R             G           L   I V     +GG        +VE 
Sbjct: 190 VTPMATKR------------SGAG------VALLNDHIYV-----VGGFDGTAHLSSVEA 226

Query: 192 YDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLKKHV 246
           Y+  +DSW     +    R       + + + RGR Y            S+  +D     
Sbjct: 227 YNIRTDSWTTVTSMTTP-RCY-----VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280

Query: 247 WSEVQTL 253
           W  V ++
Sbjct: 281 WEVVTSM 287

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 47/140 (33%)

Query: 83  FDPASNSWFHLPPAQEPRAGSC------FI----GANGFFFTTT-----PRFGFSRILNT 127
           +DP +  W ++ P    R+G+        I    G +G    ++      R         
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD------- 232

Query: 128 SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRL 187
           SW   + +   R      V                    +   + G        D    L
Sbjct: 233 SWTTVTSMTTPRCYVGATVLRG-----------------RLYAIAGY-------DGNSLL 268

Query: 188 A-VEIYDPHSDSWELCPPLP 206
           + +E YDP  DSWE+   + 
Sbjct: 269 SSIECYDPIIDSWEVVTSMG 288

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 20/104 (19%)

Query: 159 SGFACNLPKFIVVGGVRFIGGLVDIEDRLA-VEIYDPHSDSWELCPPLPADFRSGYSSQY 217
           +       + ++V     +GG    +  +  VE YDP +  W   P +    R       
Sbjct: 7   TRARLGANEVLLV-----VGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK-RRYV---- 56

Query: 218 LSSALFRGRFYVFG-----IYSFSVSSFDL---KKHVWSEVQTL 253
            +S     R YV G         SV   D    +  VW  V  +
Sbjct: 57  -ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM 99

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 46/193 (23%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTT---TPRFGFSRILNT---------SWH 130
           +D  + SW   P     R     + ANG  +            R+LN+         +W 
Sbjct: 123 YDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT 182

Query: 131 LTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVE 190
              P+  +R            + H          +   I       +GG   +     VE
Sbjct: 183 ELCPMIEAR------------KNHG------LVFVKDKIFA-----VGGQNGLGGLDNVE 219

Query: 191 IYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----IYSFSVSSFDLKKH 245
            YD   + W++  P+P           +  A      YV            +  ++ +  
Sbjct: 220 YYDIKLNEWKMVSPMPWK-GVT-----VKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273

Query: 246 VWSEVQTLRPPGV 258
            W     +R   V
Sbjct: 274 KWVANSKVRAFPV 286

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 28/188 (14%), Positives = 44/188 (23%), Gaps = 52/188 (27%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFG--FSRILNT---------SWHL 131
           F+P   SW  +    E R  +  +  +   +      G      +           SW+ 
Sbjct: 29  FNPKDYSWTDIRCPFEKRRDAACVFWDNVVYI----LGGSQLFPIKRMDCYNVVKDSWYS 84

Query: 132 TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEI 191
                  R +                         K    GG       +        E 
Sbjct: 85  KLGPPTPRDSLAACAAEG-----------------KIYTSGGSEVGNSALY-----LFEC 122

Query: 192 YDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG---------IYSFSVSSFDL 242
           YD  ++SW   P +    R              G  YV G             S   +D 
Sbjct: 123 YDTRTESWHTKPSMLT-QRCS-----HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176

Query: 243 KKHVWSEV 250
               W+E+
Sbjct: 177 ATETWTEL 184

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 20/88 (22%)

Query: 167 KFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR 226
           +  + GG              +   ++P   SW          R        +   +   
Sbjct: 14  RIALFGG----------SQPQSCRYFNPKDYSWTDIRCPFEK-RR-----DAACVFWDNV 57

Query: 227 FYVFG----IYSFSVSSFDLKKHVWSEV 250
            Y+ G         +  +++ K  W   
Sbjct: 58  VYILGGSQLFPIKRMDCYNVVKDSWYSK 85

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 37/192 (19%), Positives = 50/192 (26%), Gaps = 49/192 (25%)

Query: 81  FAFDPASNSWFHLPPA-QEPRAGSCFIGANGFFF-----TTTPRFGFSRILNT------- 127
            A+DPA+N  +    + Q P+     +      F               +          
Sbjct: 16  VAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL 75

Query: 128 --SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIED 185
              W    PL   R    +G   +                    VVGG     G    E 
Sbjct: 76  DSEWLGMPPLPSPRCLFGLGEALN-----------------SIYVVGGREIKDG----ER 114

Query: 186 RLA-VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG------IYSFSVS 238
            L  V  YD  S  W    PLP     G      +        YV G           + 
Sbjct: 115 CLDSVMCYDRLSFKWGESDPLPY-VVYG-----HTVLSHMDLVYVIGGKGSDRKCLNKMC 168

Query: 239 SFDLKKHVWSEV 250
            +D KK  W E+
Sbjct: 169 VYDPKKFEWKEL 180

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 28/191 (14%), Positives = 48/191 (25%), Gaps = 52/191 (27%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNT---------SWHLTS 133
           +D  S  W    P      G   +      +    +    + LN           W   +
Sbjct: 122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA 181

Query: 134 PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYD 193
           P++ +R      V                      I+V       G+ D     + E+Y 
Sbjct: 182 PMQTARSLFGATVHDGR------------------IIV-----AAGVTDTGLTSSAEVYS 218

Query: 194 PHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG--------------IYSFSVSS 239
              + W      P + RS      LS     G  Y  G                   +  
Sbjct: 219 ITDNKWAPFEAFPQE-RSS-----LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWR 272

Query: 240 FDLKKHVWSEV 250
           ++ ++  W  V
Sbjct: 273 YNEEEKKWEGV 283

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 48/204 (23%)

Query: 65  FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTT--TPRFGFS 122
            F    +     +     FD   + W  +PP   PR       A    +           
Sbjct: 54  LFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGE 113

Query: 123 RILNT---------SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGG 173
           R L++          W  + PL +                      G        +    
Sbjct: 114 RCLDSVMCYDRLSFKWGESDPLPYVV-------------------YGHTV-----LSHMD 149

Query: 174 VRF-IGGLVDIEDRLA-VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG 231
           + + IGG       L  + +YDP    W+   P+    RS        + +  GR  V  
Sbjct: 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSL-----FGATVHDGRIIVAA 203

Query: 232 -----IYSFSVSSFDLKKHVWSEV 250
                  + S   + +  + W+  
Sbjct: 204 GVTDTGLTSSAEVYSITDNKWAPF 227

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 19/166 (11%), Positives = 35/166 (21%), Gaps = 38/166 (22%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNT---------SWHLTS 133
           +DP    W  L P Q  R+       +G               ++          W    
Sbjct: 170 YDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL-TSSAEVYSITDNKWAPFE 228

Query: 134 PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLA---VE 190
                R +  +                          +GG   +              + 
Sbjct: 229 AFPQERSSLSLVSLVG-----------------TLYAIGGFATLETESGELVPTELNDIW 271

Query: 191 IYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFS 236
            Y+     WE      A + +G       +     R  V  +   +
Sbjct: 272 RYNEEEKKWEGVLREIA-YAAG-------ATFLPVRLNVLRLTKMA 309

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 14/92 (15%)

Query: 170 VVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYV 229
           V GG+ +     +         +D     W   PPLP+  R                 YV
Sbjct: 50  VAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-RC-----LFGLGEALNSIYV 103

Query: 230 FGIYSF--------SVSSFDLKKHVWSEVQTL 253
            G            SV  +D     W E   L
Sbjct: 104 VGGREIKDGERCLDSVMCYDRLSFKWGESDPL 135

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 16/78 (20%)

Query: 188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-----------IYSFS 236
               YDP ++            ++     ++S      + +V G             S  
Sbjct: 14  GAVAYDPAANECYCASLSSQVPKN-----HVSLVTKENQVFVAGGLFYNEDNKEDPMSAY 68

Query: 237 VSSFDLKKHVWSEVQTLR 254
              FD     W  +  L 
Sbjct: 69  FLQFDHLDSEWLGMPPLP 86

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 39/209 (18%), Positives = 61/209 (29%), Gaps = 59/209 (28%)

Query: 65  FFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRA--GSCFIGAN-----GFFFTTTP 117
            ++   +      +  F  D  S+ W  LPP    R   G   +        G    T  
Sbjct: 65  LYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQT-- 122

Query: 118 RFGFSRILNT---------SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKF 168
                  L++          W     L                        G        
Sbjct: 123 ----EASLDSVLCYDPVAAKWSEVKNLPIKV-------------------YGHNV----- 154

Query: 169 IVVGGVRF-IGGLVDIEDRLA-VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR 226
           I   G+ + +GG  D +     V IY+P    W+   P+    RS         A+ +G+
Sbjct: 155 ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP-RSM-----FGVAIHKGK 208

Query: 227 FYVFG-----IYSFSVSSFDLKKHVWSEV 250
             + G       S SV +FDLK + W  +
Sbjct: 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVM 237

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 36/195 (18%), Positives = 52/195 (26%), Gaps = 50/195 (25%)

Query: 78  NQSFAFDPASNSWFHLPPA-QEPRAGSCFIGANGFFF-----TTTPRFGFSRILNT---- 127
             + A+DP  N  +    A Q PR  S  +      +               + +     
Sbjct: 24  TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83

Query: 128 -----SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVD 182
                 W    PL  +R    +G   D                 K  VV G         
Sbjct: 84  DNVSSEWVGLPPLPSARCLFGLGEVDD-----------------KIYVVAGKDLQT---- 122

Query: 183 IEDRLA-VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG------IYSF 235
            E  L  V  YDP +  W     LP     G      +     G  Y  G        + 
Sbjct: 123 -EASLDSVLCYDPVAAKWSEVKNLPI-KVYG-----HNVISHNGMIYCLGGKTDDKKCTN 175

Query: 236 SVSSFDLKKHVWSEV 250
            V  ++ KK  W ++
Sbjct: 176 RVFIYNPKKGDWKDL 190

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 52/216 (24%)

Query: 83  FDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRILNT---------SWHLTS 133
           +DP +  W  +        G   I  NG  +    +    +  N           W   +
Sbjct: 132 YDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA 191

Query: 134 PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYD 193
           P++  R    V +                      IV+      GG+ +     +VE +D
Sbjct: 192 PMKTPRSMFGVAIHKGK------------------IVI-----AGGVTEDGLSASVEAFD 228

Query: 194 PHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG--------------IYSFSVSS 239
             ++ WE+    P + RS      +S     G  Y  G                   +  
Sbjct: 229 LKTNKWEVMTEFPQE-RSS-----ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWK 282

Query: 240 FDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGM 275
           ++  K  W+ +          S L    N+  L+ +
Sbjct: 283 YEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSKL 318

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/179 (11%), Positives = 40/179 (22%), Gaps = 44/179 (24%)

Query: 69  GLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFG---FSRIL 125
           G  +     N+ F ++P    W  L P + PR+        G         G      + 
Sbjct: 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVI----AGGVTEDGLS 221

Query: 126 NT---------SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRF 176
            +          W + +     R +  +                          +GG   
Sbjct: 222 ASVEAFDLKTNKWEVMTEFPQERSSISLVSLAG-----------------SLYAIGGFAM 264

Query: 177 IGGLVDIEDRLA---VEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGI 232
           I              +  Y+     W          R         ++    R  +F +
Sbjct: 265 IQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI---RYA-----SGASCLATRLNLFKL 315

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 27/163 (16%), Positives = 41/163 (25%), Gaps = 47/163 (28%)

Query: 112 FFTTTPRFG-----------------FSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGH 154
           +    PR G                 +  + N  +      +  R +  +    +     
Sbjct: 3   YLNDIPRHGMFVKDLILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQN----- 57

Query: 155 CDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYS 214
                       +  VVGG+       D   +      D  S  W   PPLP+  R    
Sbjct: 58  ------------QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-RC--- 101

Query: 215 SQYLSSALFRGRFYVFG-------IYSFSVSSFDLKKHVWSEV 250
                      + YV             SV  +D     WSEV
Sbjct: 102 --LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 28/170 (16%)

Query: 77  NNQSFAFDPASNSWFHLPPA-QEPRAGSCFIGANGFFFTTTPRFGFSRILNTSWHL---T 132
           N    +FDP++  W +   +     AG+  +      +            +  + L    
Sbjct: 167 NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTG 226

Query: 133 SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRL----- 187
           + L+++++ P          G     +G + +    I  GG  F G   + ++       
Sbjct: 227 NNLKWNKLAP-----VSSPDGVAGGFAGISND--SLIFAGGAGFKGSRENYQNGKNYAHE 279

Query: 188 ------AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG 231
                 + +I+  H+  W+    L    R+     Y  S  +     + G
Sbjct: 280 GLKKSYSTDIHLWHNGKWDKSGELSQG-RA-----YGVSLPWNNSLLIIG 323

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 25/237 (10%), Positives = 56/237 (23%), Gaps = 40/237 (16%)

Query: 80  SFAFDPASNSWFHLPP-AQEPRAGSCFIGANGFFF----TTTPRFGFSRILNTSW----- 129
                     W  L      PR  +     +G  +          G +++ N        
Sbjct: 35  KLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94

Query: 130 -----HLTSPLRFSRINPLVGVF---------YDHDRGHCDLA--SGFACNLPKFIVVGG 173
                 L S         +  V           + +  +      +    +      +  
Sbjct: 95  TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA 154

Query: 174 VRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-- 231
             F     D      +  +DP +  W      P    +G      +      + ++    
Sbjct: 155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG-----AAVVNKGDKTWLINGE 209

Query: 232 ----IYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLIASPN-MLVLAGMCNAPRG 281
               + + +V   D   +   W+++  +  P  +        N  L+ AG       
Sbjct: 210 AKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGS 266

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 3  DHNPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          ++ P  ++ +L  ++   I S L +P L++ S VCK W  + S  S 
Sbjct: 2  ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 22/164 (13%), Positives = 44/164 (26%), Gaps = 9/164 (5%)

Query: 10  FTTLSTDITERILSLLPIPTLIRA-SSVCKSWRSIISAPSFSALIAHNTNASPR------ 62
              L   +  R+L+ LP   L++A   VC  W+ ++       L        P       
Sbjct: 51  LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEE 110

Query: 63  --PWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFG 120
              W   + L        ++   +     W  +    +        G NG  FT      
Sbjct: 111 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDSVK 170

Query: 121 FSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACN 164
                +  W   + +   +         D  +    +   ++  
Sbjct: 171 KYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGR 214

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 15/41 (36%)

Query: 8  SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPS 48
          S  T L  D+   ILS L    L +  S    W   +  P 
Sbjct: 3  STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI 43

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 6  PYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          P  ++ +L  ++   I S L +P L++ S VCK W  + S  S 
Sbjct: 5  PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 24/206 (11%), Positives = 52/206 (25%), Gaps = 25/206 (12%)

Query: 64  WFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAG--SCFIGANGFFFTTTPRFGF 121
              + G        + ++ FD  +  W  +      R    +C +             G 
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLI-----LGG 508

Query: 122 SRILNTSWHL-TSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGL 180
                       +   F  + P    F +            +      I+ GG      +
Sbjct: 509 VTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ--GIILGGGFMDQTTV 566

Query: 181 VDIEDRLAVEIYDPHSDSWELCPPL--PADFRSGYSSQYLSSALFRGRFYVFG------- 231
            D       +  +  ++   +   L  P   R G   +Y++      +  + G       
Sbjct: 567 SDKAIIFKYDA-ENATEPITVIKKLQHPLFQRYGSQIKYITP----RKLLIVGGTSPSGL 621

Query: 232 -IYSFSVSSFDLKKHVWSEVQTLRPP 256
              + S+ S D      + +   R  
Sbjct: 622 FDRTNSIISLDPLSETLTSIPISRRI 647

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIIS 45
           T+L  +I+ +I + L    +I +  V ++W  II 
Sbjct: 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 28/241 (11%), Positives = 63/241 (26%), Gaps = 23/241 (9%)

Query: 69  GLHNTSSRNNQSFAFDPASNSWFHLPPAQEPR----AGSCFIGANGFFFTTTPRFG--FS 122
           G  +          + P+S +W  LP A+              ++   +    + G  F 
Sbjct: 305 GSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQ 364

Query: 123 RILNTSWHLTSPLRFSRINPL---VGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG 179
              +T+ +         +                 C  A  +     K +  GG      
Sbjct: 365 AGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424

Query: 180 LVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFG-------- 231
                +   + + +P +    +       F   + +   S  L  G  ++ G        
Sbjct: 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT---SVVLPDGSTFITGGQRRGIPF 481

Query: 232 ---IYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK 288
                 F+   +  ++  + +        V  S  +  P+  V  G        + N + 
Sbjct: 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFD 541

Query: 289 V 289
            
Sbjct: 542 A 542

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 19/55 (34%)

Query: 13 LSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFL 67
              I E ILS L   +L  A  VCK W  + S       +      +   W  L
Sbjct: 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGL 72

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIIS 45
           + L  ++   +LS L    L++A+  C+ WR +  
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.94
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.84
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.53
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.29
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.19
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.17
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.16
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.01
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.99
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.85
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.74
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.72
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.64
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.6
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.6
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.5
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.46
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.4
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.38
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.34
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.32
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.29
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.24
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.19
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.08
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.07
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.01
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.94
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.9
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.9
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.88
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.79
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.61
2pm7_B	297	Protein transport protein SEC13, protein transport	95.6
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.57
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	95.57
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.57
3jro_A	753	Fusion protein of protein transport protein SEC13	95.48
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.45
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.34
3jro_A	753	Fusion protein of protein transport protein SEC13	95.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.33
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.24
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.22
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.15
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.14
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.13
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.93
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.81
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.81
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.74
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.71
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	94.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.58
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.52
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.51
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.4
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	94.26
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.2
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.13
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.12
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.11
2pm7_B	297	Protein transport protein SEC13, protein transport	94.1
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	93.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.78
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	93.65
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.64
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	93.51
3ott_A	758	Two-component system sensor histidine kinase; beta	93.47
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.37
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	93.29
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.24
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.17
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.14
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	92.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	92.79
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	92.56
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	92.36
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.35
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	92.31
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	92.28
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.26
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	92.19
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	92.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	92.07
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	92.05
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	91.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	91.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	91.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	91.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	91.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	91.48
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	91.45
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.43
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	91.04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	90.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	90.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.89
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.87
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	90.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	90.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.53
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	90.26
3ott_A	758	Two-component system sensor histidine kinase; beta	90.23
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	90.17
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.07
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.06
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	89.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	89.92
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	89.9
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	89.53
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	89.51
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	89.36
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	89.35
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	89.26
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	89.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	88.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	88.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.79
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	88.76
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	88.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.4
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	88.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.18
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	87.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	87.77
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	87.69
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	87.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	87.52
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	87.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	87.3
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	87.01
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	86.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	86.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	86.59
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	86.51
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	86.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	86.18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	86.14
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	86.13
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	86.05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	85.91
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	85.89
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	85.74
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	85.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	85.68
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	85.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.63
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	85.57
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	85.41
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	85.38
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	85.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	85.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	85.23
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	85.14
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	85.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	84.91
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	84.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	84.75
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	84.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	84.43
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	83.75
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	83.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	83.38
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	82.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	82.62
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	82.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	82.18
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	81.69
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	81.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	81.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	81.27
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	81.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	81.02
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	80.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	80.28
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	80.25

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=7.5e-41  Score=305.82  Aligned_cols=272  Identities=18%  Similarity=0.289  Sum_probs=231.1

Q ss_pred             cCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc-------------ceEec
Q 016239           57 TNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR-------------FGFSR  123 (392)
Q Consensus        57 ~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-------------~~ynp  123 (392)
                      +++..++.||++||. ....++++++||+.+++|..++++|.+|..++++..++.||++||.             ++||+
T Consensus        19 ~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           19 HAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             --CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             cccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECC
Confidence            556778899999998 3456788999999999999999999999999999999999999983             79999


Q ss_pred             CCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC
Q 016239          124 ILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP  203 (392)
Q Consensus       124 ~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~  203 (392)
                      . +++|+.++++|.+|..++++++                 +++||++||...      .....++++||+.+++|+.++
T Consensus        98 ~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~  153 (308)
T 1zgk_A           98 M-TNQWSPCAPMSVPRNRIGVGVI-----------------DGHIYAVGGSHG------CIHHNSVERYEPERDEWHLVA  153 (308)
T ss_dssp             T-TTEEEECCCCSSCCBTCEEEEE-----------------TTEEEEECCEET------TEECCCEEEEETTTTEEEECC
T ss_pred             C-CCeEeECCCCCcCccccEEEEE-----------------CCEEEEEcCCCC------CcccccEEEECCCCCeEeECC
Confidence            9 7999999999999999999999                 999999999742      223568999999999999999


Q ss_pred             CCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecC
Q 016239          204 PLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNA  278 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~  278 (392)
                      ++|.+ |..     ++++.++++||++||..     +.+++||+.+++|+.++.++..+. .+++++++++||++||...
T Consensus       154 ~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~  226 (308)
T 1zgk_A          154 PMLTR-RIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GAGVCVLHNCIYAAGGYDG  226 (308)
T ss_dssp             CCSSC-CBS-----CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCS
T ss_pred             CCCcc-ccc-----eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-cceEEEECCEEEEEeCCCC
Confidence            99987 766     78889999999999975     579999999999999988776544 5566788999999998754


Q ss_pred             CCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccce
Q 016239          279 PRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRC  358 (392)
Q Consensus       279 ~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~  358 (392)
                      .. ...++|+||+.+++|+++..+|..             |..++++..+++|||+||.........+..+|+++++   
T Consensus       227 ~~-~~~~v~~yd~~~~~W~~~~~~p~~-------------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~---  289 (308)
T 1zgk_A          227 QD-QLNSVERYDVETETWTFVAPMKHR-------------RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT---  289 (308)
T ss_dssp             SS-BCCCEEEEETTTTEEEECCCCSSC-------------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE---
T ss_pred             CC-ccceEEEEeCCCCcEEECCCCCCC-------------ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE---
Confidence            32 257889999999999999988866             4588899999999999996443333344455999999   


Q ss_pred             eeeecCCCCCcccccceEEE
Q 016239          359 SWRRLPQLPSPVNEFHKVIS  378 (392)
Q Consensus       359 ~W~~~~~~p~~~~~~~~~~~  378 (392)
                       |+.+++||.++..++++++
T Consensus       290 -W~~~~~~p~~r~~~~~~~l  308 (308)
T 1zgk_A          290 -WSEVTRMTSGRSGVGVAVT  308 (308)
T ss_dssp             -EEEEEECSSCCBSCEEEEC
T ss_pred             -EeecCCCCCCcccceeEeC
Confidence             9999999999999988764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=300.64  Aligned_cols=273  Identities=15%  Similarity=0.203  Sum_probs=228.7

Q ss_pred             CCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecC---------cceEecCCcCc
Q 016239           58 NASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP---------RFGFSRILNTS  128 (392)
Q Consensus        58 ~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg---------~~~ynp~~~~~  128 (392)
                      .+..++.+|++||.+. ..++++++||+.+++|..++++|.+|..++++..++.||++||         +++||+. +++
T Consensus        11 ~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~-~~~   88 (302)
T 2xn4_A           11 PMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPV-KDQ   88 (302)
T ss_dssp             ----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETT-TTE
T ss_pred             ccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCC-CCc
Confidence            3445778999999765 3567899999999999999999999999999999999999998         3899999 799


Q ss_pred             eeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCC
Q 016239          129 WHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPAD  208 (392)
Q Consensus       129 W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  208 (392)
                      |+.++++|.+|..|+++++                 +++||++||.+.      .....++++||+.+++|+.++++|.+
T Consensus        89 W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~p~~  145 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAAVL-----------------NGLLYAVGGFDG------STGLSSVEAYNIKSNEWFHVAPMNTR  145 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE-----------------TTEEEEEEEECS------SCEEEEEEEEETTTTEEEEECCCSSC
T ss_pred             eeeCCCCCccccceEEEEE-----------------CCEEEEEcCCCC------CccCceEEEEeCCCCeEeecCCCCCc
Confidence            9999999999999999999                 999999999742      23456899999999999999999987


Q ss_pred             CCCCCCccceeeEEECCEEEEEeecc-------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCC
Q 016239          209 FRSGYSSQYLSSALFRGRFYVFGIYS-------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRG  281 (392)
Q Consensus       209 ~~~~~~~~~~~~~~~~g~ly~~gg~~-------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~  281 (392)
                       |..     ++++.++++||++||..       ..+++||+.+++|+.++.++..+ ..+++++.+++||++||.... .
T Consensus       146 -r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~-~  217 (302)
T 2xn4_A          146 -RSS-----VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGVLNNLLYAVGGHDGP-L  217 (302)
T ss_dssp             -CBS-----CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCBSSS-S
T ss_pred             -ccC-----ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-ccccEEEECCEEEEECCCCCC-c
Confidence             766     78889999999999863       47999999999999998877644 455668889999999997543 2


Q ss_pred             CceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeee
Q 016239          282 PSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWR  361 (392)
Q Consensus       282 ~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~  361 (392)
                      ...++|+||+.+++|++++.+|..             |..++++..+++|||+||.........+..+|+++++    |+
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~-------------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~----W~  280 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMC-------------RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK----WT  280 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSC-------------CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE----EE
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCc-------------cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe----EE
Confidence            246799999999999999998865             4578889999999999996433333334455999999    99


Q ss_pred             ecC-CCCCcccccceEEEee
Q 016239          362 RLP-QLPSPVNEFHKVISFC  380 (392)
Q Consensus       362 ~~~-~~p~~~~~~~~~~~~~  380 (392)
                      .++ +||.++..++++++..
T Consensus       281 ~~~~~~~~~r~~~~~~~~~~  300 (302)
T 2xn4_A          281 VVSSCMSTGRSYAGVTVIDK  300 (302)
T ss_dssp             ECSSCCSSCCBSCEEEEEEC
T ss_pred             ECCcccCcccccceEEEecc
Confidence            997 8999998888877643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=302.73  Aligned_cols=275  Identities=17%  Similarity=0.182  Sum_probs=231.6

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc--------ceEecCCcCceeec
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR--------FGFSRILNTSWHLT  132 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~--------~~ynp~~~~~W~~~  132 (392)
                      ..+.+|++||...   .+++++||+.+++|..++++|.+|..++++..++.||++||.        ++||+. +++|+.+
T Consensus        10 ~~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~-~~~W~~~   85 (306)
T 3ii7_A           10 KHDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVV-KDSWYSK   85 (306)
T ss_dssp             CCCEEEEEECCSS---TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETT-TTEEEEE
T ss_pred             ccceEEEEeCCCC---CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCC-CCeEEEC
Confidence            3578999999765   588999999999999999999999999999999999999982        799999 7999999


Q ss_pred             CCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCC
Q 016239          133 SPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSG  212 (392)
Q Consensus       133 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~  212 (392)
                      +++|.+|..|+++++                 +++||++||.+.     ......++++||+.+++|+.++++|.+ |..
T Consensus        86 ~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~  142 (306)
T 3ii7_A           86 LGPPTPRDSLAACAA-----------------EGKIYTSGGSEV-----GNSALYLFECYDTRTESWHTKPSMLTQ-RCS  142 (306)
T ss_dssp             ECCSSCCBSCEEEEE-----------------TTEEEEECCBBT-----TBSCCCCEEEEETTTTEEEEECCCSSC-CBS
T ss_pred             CCCCccccceeEEEE-----------------CCEEEEECCCCC-----CCcEeeeEEEEeCCCCceEeCCCCcCC-cce
Confidence            999999999999999                 999999999741     123456899999999999999999987 765


Q ss_pred             CCccceeeEEECCEEEEEeec---------ccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCc
Q 016239          213 YSSQYLSSALFRGRFYVFGIY---------SFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPS  283 (392)
Q Consensus       213 ~~~~~~~~~~~~g~ly~~gg~---------~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~  283 (392)
                           ++++.++++||++||.         ...+++||+.+++|+.+++++..+ ..+.++.++++||++||.... ...
T Consensus       143 -----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~~-~~~  215 (306)
T 3ii7_A          143 -----HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR-KNHGLVFVKDKIFAVGGQNGL-GGL  215 (306)
T ss_dssp             -----CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETT-EEB
T ss_pred             -----eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh-hcceEEEECCEEEEEeCCCCC-CCC
Confidence                 8888999999999986         356999999999999998777644 456668889999999987654 224


Q ss_pred             eeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          284 FNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       284 ~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      .++|+||+.+++|++++.+|..             |..++++..+++|||+||.........+..+|+++++    |+.+
T Consensus       216 ~~~~~yd~~~~~W~~~~~~p~~-------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~----W~~~  278 (306)
T 3ii7_A          216 DNVEYYDIKLNEWKMVSPMPWK-------------GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK----WVAN  278 (306)
T ss_dssp             CCEEEEETTTTEEEECCCCSCC-------------BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE----EEEE
T ss_pred             ceEEEeeCCCCcEEECCCCCCC-------------ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe----EEeC
Confidence            6789999999999999998876             4588999999999999996544334445556999999    9999


Q ss_pred             CCCCCcccccceEEEeecccccc
Q 016239          364 PQLPSPVNEFHKVISFCSTVSLH  386 (392)
Q Consensus       364 ~~~p~~~~~~~~~~~~~~~~~~~  386 (392)
                      +++|.++..++++++.....+.+
T Consensus       279 ~~~~~~r~~~~~~~~~~~~~~~~  301 (306)
T 3ii7_A          279 SKVRAFPVTSCLICVVDTCGANE  301 (306)
T ss_dssp             EEEECCSCTTCEEEEEECC----
T ss_pred             CCcccccceeEEEEECCcccCCh
Confidence            99999999998888776544443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=296.72  Aligned_cols=270  Identities=14%  Similarity=0.191  Sum_probs=229.4

Q ss_pred             CCCEEEEEcc-cCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecC---------cceEecCCcCc--
Q 016239           61 PRPWFFLFGL-HNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP---------RFGFSRILNTS--  128 (392)
Q Consensus        61 ~~~~l~~~gg-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg---------~~~ynp~~~~~--  128 (392)
                      .++.+|++|| .+.....+++++||+.+++|..++++|.+|..++++..++.||++||         +++||+. +++  
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~-~~~~~   91 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYT-ADEDG   91 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT-CCTTC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECC-CCCCC
Confidence            4678999999 55556678999999999999999999999999999999999999998         3899999 789  


Q ss_pred             -eeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCC
Q 016239          129 -WHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPA  207 (392)
Q Consensus       129 -W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  207 (392)
                       |+.++++|.+|..|+++++                 +++||++||...      .....++++||+.+++|+.++++|.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~-----------------~~~lyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~p~  148 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL-----------------GDMIYVSGGFDG------SRRHTSMERYDPNIDQWSMLGDMQT  148 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE-----------------TTEEEEECCBCS------SCBCCEEEEEETTTTEEEEEEECSS
T ss_pred             eeEECCCCCCCccceeEEEE-----------------CCEEEEEcccCC------CcccceEEEEcCCCCeEEECCCCCC
Confidence             9999999999999999999                 999999999741      2235689999999999999999888


Q ss_pred             CCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCC
Q 016239          208 DFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGP  282 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~  282 (392)
                      + |..     ++++.++++||++||..     ..+++||+.+++|+.++.++..+ ..+.++..+++||++||..... .
T Consensus       149 ~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~-~  220 (301)
T 2vpj_A          149 A-REG-----AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-SGAGVALLNDHIYVVGGFDGTA-H  220 (301)
T ss_dssp             C-CBS-----CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCBCSSS-B
T ss_pred             C-ccc-----ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-ccceEEEECCEEEEEeCCCCCc-c
Confidence            7 665     78889999999999975     57999999999999998777654 4566688899999999876432 2


Q ss_pred             ceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239          283 SFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR  362 (392)
Q Consensus       283 ~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~  362 (392)
                      ..++|+||+.+++|++++.+|..             |..++++..+++||++||.........+..+|+++++    |+.
T Consensus       221 ~~~v~~yd~~~~~W~~~~~~p~~-------------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~----W~~  283 (301)
T 2vpj_A          221 LSSVEAYNIRTDSWTTVTSMTTP-------------RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS----WEV  283 (301)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSC-------------CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE----EEE
T ss_pred             cceEEEEeCCCCcEEECCCCCCc-------------ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe----EEE
Confidence            56789999999999999988876             4578889999999999995433222334445999999    999


Q ss_pred             cCCCCCcccccceEEEe
Q 016239          363 LPQLPSPVNEFHKVISF  379 (392)
Q Consensus       363 ~~~~p~~~~~~~~~~~~  379 (392)
                      +++||.++..++++++.
T Consensus       284 ~~~~~~~r~~~~~~~~~  300 (301)
T 2vpj_A          284 VTSMGTQRCDAGVCVLR  300 (301)
T ss_dssp             EEEEEEEEESCEEEEEE
T ss_pred             cCCCCcccccceEEEeC
Confidence            99999999999888763

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=285.74  Aligned_cols=263  Identities=18%  Similarity=0.226  Sum_probs=215.8

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCC--CCCCCcceEEeecceEEeecC---------------cceEecC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPA--QEPRAGSCFIGANGFFFTTTP---------------RFGFSRI  124 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~r~~~~~~~~~g~i~v~gg---------------~~~ynp~  124 (392)
                      ...++++||       .++++|||.+++|.. +++  |.+|.+++++..++.||++||               +++||+.
T Consensus         4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~   75 (315)
T 4asc_A            4 QDLIFMISE-------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL   75 (315)
T ss_dssp             EEEEEEEET-------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred             ceEEEEEcC-------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCC
Confidence            457888988       578999999999986 555  457999999999999999998               3799999


Q ss_pred             CcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC
Q 016239          125 LNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP  204 (392)
Q Consensus       125 ~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  204 (392)
                       +++|+.++++|.+|..|+++++                 +++||++||.+...   ......++++||+.+++|+.+++
T Consensus        76 -~~~W~~~~~~p~~r~~~~~~~~-----------------~~~lyv~GG~~~~~---~~~~~~~~~~~d~~~~~W~~~~~  134 (315)
T 4asc_A           76 -DSEWLGMPPLPSPRCLFGLGEA-----------------LNSIYVVGGREIKD---GERCLDSVMCYDRLSFKWGESDP  134 (315)
T ss_dssp             -TTEEEECCCBSSCEESCEEEEE-----------------TTEEEEECCEESST---TCCBCCCEEEEETTTTEEEECCC
T ss_pred             -CCeEEECCCCCcchhceeEEEE-----------------CCEEEEEeCCcCCC---CCcccceEEEECCCCCcEeECCC
Confidence             7999999999999999999999                 99999999974211   12345689999999999999999


Q ss_pred             CCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecC
Q 016239          205 LPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNA  278 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~  278 (392)
                      +|.+ |..     ++++.++++||++||..      +.+++||+.+++|+.+++++..+ ..+++++.+++||++||...
T Consensus       135 ~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~  207 (315)
T 4asc_A          135 LPYV-VYG-----HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAGVTD  207 (315)
T ss_dssp             CSSC-CBS-----CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEEECS
T ss_pred             CCCc-ccc-----eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch-hceEEEEECCEEEEEeccCC
Confidence            9987 776     88899999999999982      58999999999999998877644 45566888999999999765


Q ss_pred             CCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC---------CCCeEEEEe
Q 016239          279 PRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK---------KYPACVCEI  349 (392)
Q Consensus       279 ~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~---------~~~~~~~~~  349 (392)
                      .. ...++|+||+.+++|++++.+|..             |..++++..+++|||+||....         .....+..+
T Consensus       208 ~~-~~~~~~~yd~~~~~W~~~~~~p~~-------------r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y  273 (315)
T 4asc_A          208 TG-LTSSAEVYSITDNKWAPFEAFPQE-------------RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRY  273 (315)
T ss_dssp             SS-EEEEEEEEETTTTEEEEECCCSSC-------------CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CC-ccceEEEEECCCCeEEECCCCCCc-------------ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEe
Confidence            42 356899999999999999998876             4588999999999999996421         111223345


Q ss_pred             ecCCCccceeeeecCCCCCcccccceEEEee
Q 016239          350 GTESDKCRCSWRRLPQLPSPVNEFHKVISFC  380 (392)
Q Consensus       350 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  380 (392)
                      |+++++    |+.+  +|.++..++++++..
T Consensus       274 d~~~~~----W~~~--~~~~r~~~~~~~~~~  298 (315)
T 4asc_A          274 NEEEKK----WEGV--LREIAYAAGATFLPV  298 (315)
T ss_dssp             ETTTTE----EEEE--ESCSSCCSSCEEEEE
T ss_pred             cCCCCh----hhhh--ccCCcCccceEEeCC
Confidence            999999    9999  455677777666544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=3.6e-37  Score=282.66  Aligned_cols=264  Identities=18%  Similarity=0.241  Sum_probs=216.6

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCC-CCCCCCCcceEEeecceEEeecC---------------cceEecC
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLP-PAQEPRAGSCFIGANGFFFTTTP---------------RFGFSRI  124 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~g~i~v~gg---------------~~~ynp~  124 (392)
                      ....++++||       ..+++|||.+++|...+ +.+.+|..++++..++.||++||               +++||+.
T Consensus        14 ~~~~i~~~GG-------~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~   86 (318)
T 2woz_A           14 VKDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNV   86 (318)
T ss_dssp             EEEEEEEECS-------SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETT
T ss_pred             ecchhhhccc-------cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCC
Confidence            3568999998       34799999999998843 22367888898999999999998               3689999


Q ss_pred             CcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC
Q 016239          125 LNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP  204 (392)
Q Consensus       125 ~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  204 (392)
                       +++|+.++++|.+|..|+++++                 +++||++||....    ......++++||+.+++|+.+++
T Consensus        87 -~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~~----~~~~~~~~~~yd~~~~~W~~~~~  144 (318)
T 2woz_A           87 -SSEWVGLPPLPSARCLFGLGEV-----------------DDKIYVVAGKDLQ----TEASLDSVLCYDPVAAKWSEVKN  144 (318)
T ss_dssp             -TTEEEECSCBSSCBCSCEEEEE-----------------TTEEEEEEEEBTT----TCCEEEEEEEEETTTTEEEEECC
T ss_pred             -CCcEEECCCCCccccccceEEE-----------------CCEEEEEcCccCC----CCcccceEEEEeCCCCCEeECCC
Confidence             7999999999999999999999                 9999999997421    12345689999999999999999


Q ss_pred             CCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecC
Q 016239          205 LPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNA  278 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~  278 (392)
                      +|.+ |.+     ++++.++++||++||..      +++++||+.+++|+.+++++..+ ..+++++.+++||++||...
T Consensus       145 ~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~  217 (318)
T 2woz_A          145 LPIK-VYG-----HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAIHKGKIVIAGGVTE  217 (318)
T ss_dssp             CSSC-EES-----CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEEEEEET
T ss_pred             CCCc-ccc-----cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-ccceEEEECCEEEEEcCcCC
Confidence            9987 766     78888999999999963      47999999999999998877654 44566888999999999765


Q ss_pred             CCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC---------CCCeEEEEe
Q 016239          279 PRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK---------KYPACVCEI  349 (392)
Q Consensus       279 ~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~---------~~~~~~~~~  349 (392)
                      .. ....+|+||+.+++|++++.+|..             |..++++..+++||++||....         .....+..+
T Consensus       218 ~~-~~~~~~~yd~~~~~W~~~~~~p~~-------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y  283 (318)
T 2woz_A          218 DG-LSASVEAFDLKTNKWEVMTEFPQE-------------RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY  283 (318)
T ss_dssp             TE-EEEEEEEEETTTCCEEECCCCSSC-------------CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred             CC-ccceEEEEECCCCeEEECCCCCCc-------------ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence            32 256899999999999999998876             4578999999999999996431         112334556


Q ss_pred             ecCCCccceeeeecCCCCCcccccceEEEee
Q 016239          350 GTESDKCRCSWRRLPQLPSPVNEFHKVISFC  380 (392)
Q Consensus       350 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  380 (392)
                      |+++++    |+.+  +|.++..++++++..
T Consensus       284 d~~~~~----W~~~--~~~~r~~~~~~~~~~  308 (318)
T 2woz_A          284 EDDKKE----WAGM--LKEIRYASGASCLAT  308 (318)
T ss_dssp             ETTTTE----EEEE--ESCCGGGTTCEEEEE
T ss_pred             eCCCCE----ehhh--cccccccccceeeCC
Confidence            999999    9999  788888887776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=2.9e-35  Score=274.34  Aligned_cols=268  Identities=15%  Similarity=0.090  Sum_probs=205.9

Q ss_pred             cCCCCCCEEEEEcccCCCCCCCceeeeeCC--CCceeeCCCCC-CCCCcceEEeecceEEeecCc--------------c
Q 016239           57 TNASPRPWFFLFGLHNTSSRNNQSFAFDPA--SNSWFHLPPAQ-EPRAGSCFIGANGFFFTTTPR--------------F  119 (392)
Q Consensus        57 ~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~g~i~v~gg~--------------~  119 (392)
                      .++..++.||++||...    +++++||+.  +++|..++++| .+|..+++++.++.||++||.              +
T Consensus        14 ~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~   89 (357)
T 2uvk_A           14 TGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVH   89 (357)
T ss_dssp             EEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEE
T ss_pred             EEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEE
Confidence            44455899999999764    479999998  49999999999 899999999999999999884              7


Q ss_pred             eEecCCcCceeecCCCC-cCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcc------------------
Q 016239          120 GFSRILNTSWHLTSPLR-FSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGL------------------  180 (392)
Q Consensus       120 ~ynp~~~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~------------------  180 (392)
                      +||+. +++|+++++++ .+|..|++++.                 +++||++||.+.....                  
T Consensus        90 ~yd~~-~~~W~~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  151 (357)
T 2uvk_A           90 KYNPK-TNSWVKLMSHAPMGMAGHVTFVH-----------------NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK  151 (357)
T ss_dssp             EEETT-TTEEEECSCCCSSCCSSEEEEEE-----------------TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             EEeCC-CCcEEECCCCCCcccccceEEEE-----------------CCEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence            89999 79999999998 89999999888                 9999999997421100                  


Q ss_pred             ----------cccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc------cEEEEEEC--
Q 016239          181 ----------VDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS------FSVSSFDL--  242 (392)
Q Consensus       181 ----------~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~------~~i~~yd~--  242 (392)
                                .......++++||+.+++|+.++++|.+.+..     ++++.++++||++||..      ..++.||+  
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~-----~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~  226 (357)
T 2uvk_A          152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG-----AAVVNKGDKTWLINGEAKPGLRTDAVFELDFTG  226 (357)
T ss_dssp             HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBS-----CEEEEETTEEEEECCEEETTEECCCEEEEECC-
T ss_pred             hhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCccc-----ccEEEECCEEEEEeeecCCCcccCceEEEEecC
Confidence                      00012468999999999999999888763443     78889999999999963      47888876  


Q ss_pred             CCCceeecccCCCC-cccceeEEeeCCeEEEEEeecCCC----------------CCceeEEEeecCccceEecccCCHH
Q 016239          243 KKHVWSEVQTLRPP-GVMFSFLIASPNMLVLAGMCNAPR----------------GPSFNLWKVDELSMEFSEIAIMPHD  305 (392)
Q Consensus       243 ~~~~W~~i~~~~~~-~~~~~~~~~~~g~l~v~gg~~~~~----------------~~~~~v~~~d~~~~~W~~~~~~p~~  305 (392)
                      .+++|+.+..++.+ .+..+++++.+++||++||.....                .....+++||+.+++|++++.+|..
T Consensus       227 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  306 (357)
T 2uvk_A          227 NNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG  306 (357)
T ss_dssp             --CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC
T ss_pred             CCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC
Confidence            99999999887543 344556788999999999864321                1125788899999999999999876


Q ss_pred             HHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEE-eecCCCccceeeeecCCCCC
Q 016239          306 FLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCE-IGTESDKCRCSWRRLPQLPS  368 (392)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~-~d~~~~~~~~~W~~~~~~p~  368 (392)
                                   |..++++..+++|||+||..........++ ++.++++    |.+..+.|.
T Consensus       307 -------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~----~~~~~~~~~  353 (357)
T 2uvk_A          307 -------------RAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK----VTVQNLEHH  353 (357)
T ss_dssp             -------------CBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS----CEEEC----
T ss_pred             -------------cccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE----eEeeecccc
Confidence                         457888999999999999654444344455 4889999    999988774

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.6e-36  Score=271.43  Aligned_cols=259  Identities=16%  Similarity=0.226  Sum_probs=215.8

Q ss_pred             hhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEE
Q 016239           27 IPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFI  106 (392)
Q Consensus        27 ~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  106 (392)
                      ..++..+++..++|..+...|.  .+.. +.++..++.+|++||.+....+++++.||+.+++|..+++++.+|..++++
T Consensus        29 ~~~~~~~d~~~~~W~~~~~~p~--~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  105 (302)
T 2xn4_A           29 IRSVECYDFKEERWHQVAELPS--RRCR-AGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA  105 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSS--CCBS-CEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             CCcEEEEcCcCCcEeEcccCCc--cccc-ceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE
Confidence            4567788999999999876665  2322 244556889999999887777789999999999999999999999999999


Q ss_pred             eecceEEeecC---------cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeec
Q 016239          107 GANGFFFTTTP---------RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFI  177 (392)
Q Consensus       107 ~~~g~i~v~gg---------~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~  177 (392)
                      ..++.||++||         +++||+. +++|+.++++|.+|..++++++                 +++||++||.+..
T Consensus       106 ~~~~~iyv~GG~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~~  167 (302)
T 2xn4_A          106 VLNGLLYAVGGFDGSTGLSSVEAYNIK-SNEWFHVAPMNTRRSSVGVGVV-----------------GGLLYAVGGYDVA  167 (302)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEEEETT-TTEEEEECCCSSCCBSCEEEEE-----------------TTEEEEECCEETT
T ss_pred             EECCEEEEEcCCCCCccCceEEEEeCC-CCeEeecCCCCCcccCceEEEE-----------------CCEEEEEeCCCCC
Confidence            99999999998         3899999 7999999999999999999999                 9999999998422


Q ss_pred             CcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeeccc
Q 016239          178 GGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQT  252 (392)
Q Consensus       178 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~~  252 (392)
                      .    .....++++||+.+++|+.++++|.+ |..     ++++.++++||++||..     +.+++||+.+++|+.++.
T Consensus       168 ~----~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  237 (302)
T 2xn4_A          168 S----RQCLSTVECYNATTNEWTYIAEMSTR-RSG-----AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD  237 (302)
T ss_dssp             T----TEECCCEEEEETTTTEEEEECCCSSC-CBS-----CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred             C----CccccEEEEEeCCCCcEEECCCCccc-ccc-----ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence            1    11256899999999999999999887 765     78899999999999974     489999999999999988


Q ss_pred             CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc-cCCHHHHHhhcCCcccCccceeEEEEeCCEE
Q 016239          253 LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA-IMPHDFLYSLVDTEEDDKFASLKCVGLGNLI  331 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i  331 (392)
                      ++..+. .+.++..+++||++||.... ....++++||+.+++|+.++ .||..             |..+++++++++|
T Consensus       238 ~~~~r~-~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~~-------------r~~~~~~~~~~~i  302 (302)
T 2xn4_A          238 MNMCRR-NAGVCAVNGLLYVVGGDDGS-CNLASVEYYNPTTDKWTVVSSCMSTG-------------RSYAGVTVIDKRL  302 (302)
T ss_dssp             CSSCCB-SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTEEEECSSCCSSC-------------CBSCEEEEEEC--
T ss_pred             CCCccc-cCeEEEECCEEEEECCcCCC-cccccEEEEcCCCCeEEECCcccCcc-------------cccceEEEecccC
Confidence            776544 55568889999999986543 22467899999999999997 68766             5588888888775

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=8.3e-36  Score=273.20  Aligned_cols=262  Identities=15%  Similarity=0.194  Sum_probs=213.1

Q ss_pred             hhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccC----C--CCCCCceeeeeCCCCceeeCCCCCCCCC
Q 016239           28 PTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN----T--SSRNNQSFAFDPASNSWFHLPPAQEPRA  101 (392)
Q Consensus        28 ~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~----~--~~~~~~~~~yd~~~~~W~~~~~~~~~r~  101 (392)
                      +++..|++..++|.. ...|....+.. +.++..++.+|++||..    .  ....++++.||+.+++|..++++|.+|.
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNH-VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSE-EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccc-eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            456788999999975 54444334433 34555688999999952    1  1223458999999999999999999999


Q ss_pred             cceEEeecceEEeecC------------cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEE
Q 016239          102 GSCFIGANGFFFTTTP------------RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFI  169 (392)
Q Consensus       102 ~~~~~~~~g~i~v~gg------------~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  169 (392)
                      .++++..++.||++||            +++||+. +++|+.++++|.+|..|+++++                 +++||
T Consensus        91 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iy  152 (315)
T 4asc_A           91 LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRL-SFKWGESDPLPYVVYGHTVLSH-----------------MDLVY  152 (315)
T ss_dssp             SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETT-TTEEEECCCCSSCCBSCEEEEE-----------------TTEEE
T ss_pred             ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCC-CCcEeECCCCCCcccceeEEEE-----------------CCEEE
Confidence            9999999999999998            3899999 7999999999999999999999                 99999


Q ss_pred             EEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCC
Q 016239          170 VVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKK  244 (392)
Q Consensus       170 v~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~  244 (392)
                      ++||...     ......++++||+.+++|+.++++|.+ |..     ++++.++++||++||..     ..+++||+.+
T Consensus       153 v~GG~~~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          153 VIGGKGS-----DRKCLNKMCVYDPKKFEWKELAPMQTA-RSL-----FGATVHDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EECCBCT-----TSCBCCCEEEEETTTTEEEECCCCSSC-CBS-----CEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEeCCCC-----CCcccceEEEEeCCCCeEEECCCCCCc-hhc-----eEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence            9999731     223456899999999999999999987 766     88899999999999975     3799999999


Q ss_pred             CceeecccCCCCcccceeEEeeCCeEEEEEeecCC----C----CCceeEEEeecCccceEecccCCHHHHHhhcCCccc
Q 016239          245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAP----R----GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEED  316 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~----~----~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~  316 (392)
                      ++|+.++.++..+. .+.++..+++||++||....    .    ....++|+||+++++|+++...|             
T Consensus       222 ~~W~~~~~~p~~r~-~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-------------  287 (315)
T 4asc_A          222 NKWAPFEAFPQERS-SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI-------------  287 (315)
T ss_dssp             TEEEEECCCSSCCB-SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCS-------------
T ss_pred             CeEEECCCCCCccc-ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCC-------------
Confidence            99999988776544 55668889999999986431    1    12468999999999999994433             


Q ss_pred             CccceeEEEEeCCEEEEEec
Q 016239          317 DKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       317 ~~~~~~~~~~~~~~i~v~gg  336 (392)
                        |..+++++++++||++..
T Consensus       288 --r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          288 --AYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             --SCCSSCEEEEEEECGGGS
T ss_pred             --cCccceEEeCCEEEEEEe
Confidence              347888999999999874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=3.5e-35  Score=268.21  Aligned_cols=246  Identities=17%  Similarity=0.243  Sum_probs=207.9

Q ss_pred             ChhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEccc----CCCCCCCceeeeeCCCCceeeCCCCCCCCC
Q 016239           26 PIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLH----NTSSRNNQSFAFDPASNSWFHLPPAQEPRA  101 (392)
Q Consensus        26 P~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~----~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  101 (392)
                      +..++..|++..++|..+...|..  +.. +.++..++.+|++||.    .....+++++.||+.+++|..+++++.+|.
T Consensus        37 ~~~~~~~~d~~~~~W~~~~~~p~~--r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~  113 (308)
T 1zgk_A           37 SLSYLEAYNPSNGTWLRLADLQVP--RSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRN  113 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSC--CBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CcceEEEEcCCCCeEeECCCCCcc--ccc-ceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcc
Confidence            456788899999999999766652  322 2445568899999997    444567889999999999999999999999


Q ss_pred             cceEEeecceEEeecC---------cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEe
Q 016239          102 GSCFIGANGFFFTTTP---------RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVG  172 (392)
Q Consensus       102 ~~~~~~~~g~i~v~gg---------~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~g  172 (392)
                      .++++..++.||++||         +++||+. +++|+.++++|.+|..++++++                 +++||++|
T Consensus       114 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~G  175 (308)
T 1zgk_A          114 RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE-RDEWHLVAPMLTRRIGVGVAVL-----------------NRLLYAVG  175 (308)
T ss_dssp             TCEEEEETTEEEEECCEETTEECCCEEEEETT-TTEEEECCCCSSCCBSCEEEEE-----------------TTEEEEEC
T ss_pred             ccEEEEECCEEEEEcCCCCCcccccEEEECCC-CCeEeECCCCCccccceEEEEE-----------------CCEEEEEe
Confidence            9999999999999998         3899999 7999999999999999999999                 99999999


Q ss_pred             ceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCce
Q 016239          173 GVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVW  247 (392)
Q Consensus       173 G~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W  247 (392)
                      |.+.      .....++++||+.+++|+.++++|.+ |..     ++++.++++||++||..     ..+++||+.+++|
T Consensus       176 G~~~------~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          176 GFDG------TNRLNSAECYYPERNEWRMITAMNTI-RSG-----AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             CBCS------SCBCCCEEEEETTTTEEEECCCCSSC-CBS-----CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCC------CCcCceEEEEeCCCCeEeeCCCCCCc-ccc-----ceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            9742      12356899999999999999999987 766     78889999999999975     5799999999999


Q ss_pred             eecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHH
Q 016239          248 SEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDF  306 (392)
Q Consensus       248 ~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~  306 (392)
                      +.++.++..+ ..+.++..+++||++||.... ....++|+||+.+++|++++.||..+
T Consensus       244 ~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~r  300 (308)
T 1zgk_A          244 TFVAPMKHRR-SALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTRMTSGR  300 (308)
T ss_dssp             EECCCCSSCC-BSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             EECCCCCCCc-cceEEEEECCEEEEEcCcCCC-cccceEEEEcCCCCEEeecCCCCCCc
Confidence            9998777654 455567889999999986543 23568999999999999999999773

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=266.13  Aligned_cols=247  Identities=14%  Similarity=0.136  Sum_probs=207.7

Q ss_pred             hhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEE
Q 016239           27 IPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFI  106 (392)
Q Consensus        27 ~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  106 (392)
                      ..++.+|++..++|..+...|.  .+.. +.++..++.+|++||.+ ...+++++.||+.+++|..++++|.+|..++++
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~--~r~~-~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~   98 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFE--KRRD-AACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC   98 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSC--CCBS-CEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE
T ss_pred             CceEEEecCCCCCEecCCCCCc--ccce-eEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEE
Confidence            4677889999999999877665  3332 34455688999999987 567789999999999999999999999999999


Q ss_pred             eecceEEeecCc----------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceee
Q 016239          107 GANGFFFTTTPR----------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRF  176 (392)
Q Consensus       107 ~~~g~i~v~gg~----------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~  176 (392)
                      ..++.||++||.          ++||+. +++|+.++++|.+|..|+++++                 +++||++||...
T Consensus        99 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~~~  160 (306)
T 3ii7_A           99 AAEGKIYTSGGSEVGNSALYLFECYDTR-TESWHTKPSMLTQRCSHGMVEA-----------------NGLIYVCGGSLG  160 (306)
T ss_dssp             EETTEEEEECCBBTTBSCCCCEEEEETT-TTEEEEECCCSSCCBSCEEEEE-----------------TTEEEEECCEES
T ss_pred             EECCEEEEECCCCCCCcEeeeEEEEeCC-CCceEeCCCCcCCcceeEEEEE-----------------CCEEEEECCCCC
Confidence            999999999983          799999 7999999999999999999999                 999999999742


Q ss_pred             cCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeecc
Q 016239          177 IGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQ  251 (392)
Q Consensus       177 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~  251 (392)
                      ...  ......++++||+.+++|+.++++|.+ |..     ++++.++++||++||..     ..+++||+.+++|+.++
T Consensus       161 ~~~--~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-----~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          161 NNV--SGRVLNSCEVYDPATETWTELCPMIEA-RKN-----HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             CTT--TCEECCCEEEEETTTTEEEEECCCSSC-CBS-----CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred             CCC--cccccceEEEeCCCCCeEEECCCccch-hhc-----ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence            211  011256899999999999999999887 665     88899999999999974     47999999999999998


Q ss_pred             cCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHH
Q 016239          252 TLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD  305 (392)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~  305 (392)
                      .++..+. .+.+++++++||++||..... ...++|+||+.+++|++++.+|..
T Consensus       233 ~~p~~r~-~~~~~~~~~~i~v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~  284 (306)
T 3ii7_A          233 PMPWKGV-TVKCAAVGSIVYVLAGFQGVG-RLGHILEYNTETDKWVANSKVRAF  284 (306)
T ss_dssp             CCSCCBS-CCEEEEETTEEEEEECBCSSS-BCCEEEEEETTTTEEEEEEEEECC
T ss_pred             CCCCCcc-ceeEEEECCEEEEEeCcCCCe-eeeeEEEEcCCCCeEEeCCCcccc
Confidence            8776444 455678899999999975432 346899999999999999998866

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=263.82  Aligned_cols=245  Identities=16%  Similarity=0.259  Sum_probs=208.4

Q ss_pred             hhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCc---eeeCCCCCCCCCcc
Q 016239           27 IPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNS---WFHLPPAQEPRAGS  103 (392)
Q Consensus        27 ~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~r~~~  103 (392)
                      ..++..+++..++|..+...|.  .+.. +.++..++.+|++||.......++++.||+.+++   |..++++|.+|..+
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~--~r~~-~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~  106 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITR--KRRY-VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA  106 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSS--CCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC
T ss_pred             eeEEEEEcCCCCeEEeCCCCCh--hhcc-ccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce
Confidence            4577888999999999886665  2322 3445567899999998866677899999999999   99999999999999


Q ss_pred             eEEeecceEEeecC---------cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEece
Q 016239          104 CFIGANGFFFTTTP---------RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGV  174 (392)
Q Consensus       104 ~~~~~~g~i~v~gg---------~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~  174 (392)
                      +++..++.||++||         +++||+. +++|+.++++|.+|..|+++++                 +++||++||.
T Consensus       107 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~GG~  168 (301)
T 2vpj_A          107 GATTLGDMIYVSGGFDGSRRHTSMERYDPN-IDQWSMLGDMQTAREGAGLVVA-----------------SGVIYCLGGY  168 (301)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCEEEEEETT-TTEEEEEEECSSCCBSCEEEEE-----------------TTEEEEECCB
T ss_pred             eEEEECCEEEEEcccCCCcccceEEEEcCC-CCeEEECCCCCCCcccceEEEE-----------------CCEEEEECCC
Confidence            99999999999998         3899999 7999999999999999999999                 9999999997


Q ss_pred             eecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceee
Q 016239          175 RFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSE  249 (392)
Q Consensus       175 ~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~  249 (392)
                      +.      .....++++||+.+++|+.++++|.+ |..     ++++.++++||++||..     +.++.||+.+++|+.
T Consensus       169 ~~------~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-----~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          169 DG------LNILNSVEKYDPHTGHWTNVTPMATK-RSG-----AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             CS------SCBCCCEEEEETTTTEEEEECCCSSC-CBS-----CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CC------CcccceEEEEeCCCCcEEeCCCCCcc-ccc-----ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            42      12456899999999999999999887 665     78899999999999974     589999999999999


Q ss_pred             cccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHH
Q 016239          250 VQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDF  306 (392)
Q Consensus       250 i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~  306 (392)
                      ++.++..+. .+.++..+++||++||..... ...++|+||+++++|+.++.||..+
T Consensus       237 ~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~~~r  291 (301)
T 2vpj_A          237 VTSMTTPRC-YVGATVLRGRLYAIAGYDGNS-LLSSIECYDPIIDSWEVVTSMGTQR  291 (301)
T ss_dssp             ECCCSSCCB-SCEEEEETTEEEEECCBCSSS-BEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             CCCCCCccc-ceeEEEECCEEEEEcCcCCCc-ccccEEEEcCCCCeEEEcCCCCccc
Confidence            988776554 455678899999999865432 3478999999999999999998773

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=8.2e-35  Score=266.95  Aligned_cols=260  Identities=16%  Similarity=0.231  Sum_probs=210.6

Q ss_pred             hHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCC------CCCCceeeeeCCCCceeeCCCCCCCCCc
Q 016239           29 TLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTS------SRNNQSFAFDPASNSWFHLPPAQEPRAG  102 (392)
Q Consensus        29 ~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~------~~~~~~~~yd~~~~~W~~~~~~~~~r~~  102 (392)
                      ++..|++..++|.. ...+....+. +++++..++.+|++||....      .....++.||+.+++|..++++|.+|..
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQIPRN-HSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTTSCSS-EEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceec-ccCCccCCcc-ceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            35678899999987 3333222332 33556678899999995311      1234589999999999999999999999


Q ss_pred             ceEEeecceEEeecC-----------cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEE
Q 016239          103 SCFIGANGFFFTTTP-----------RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVV  171 (392)
Q Consensus       103 ~~~~~~~g~i~v~gg-----------~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~  171 (392)
                      ++++..++.||++||           +++||+. +++|+.++++|.+|..|+++++                 +++||++
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~~~~~~-----------------~~~iyv~  164 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV-AAKWSEVKNLPIKVYGHNVISH-----------------NGMIYCL  164 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETT-TTEEEEECCCSSCEESCEEEEE-----------------TTEEEEE
T ss_pred             cceEEECCEEEEEcCccCCCCcccceEEEEeCC-CCCEeECCCCCCcccccEEEEE-----------------CCEEEEE
Confidence            999999999999987           2899999 7999999999999999999998                 9999999


Q ss_pred             eceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCc
Q 016239          172 GGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHV  246 (392)
Q Consensus       172 gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~  246 (392)
                      ||...     ......++++||+.+++|+.++++|.+ |..     ++++.++++||++||..     ..+++||+.+++
T Consensus       165 GG~~~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          165 GGKTD-----DKKCTNRVFIYNPKKGDWKDLAPMKTP-RSM-----FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCEES-----SSCBCCCEEEEETTTTEEEEECCCSSC-CBS-----CEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             cCCCC-----CCCccceEEEEcCCCCEEEECCCCCCC-ccc-----ceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            99742     122356899999999999999999887 665     78899999999999964     478999999999


Q ss_pred             eeecccCCCCcccceeEEeeCCeEEEEEeecCCC--------CCceeEEEeecCccceEecccCCHHHHHhhcCCcccCc
Q 016239          247 WSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPR--------GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDK  318 (392)
Q Consensus       247 W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~--------~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~  318 (392)
                      |+.++.+|..+ ..+.++..+++||++||.....        ....++|+||+.+++|+++  +|..             
T Consensus       234 W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~-------------  297 (318)
T 2woz_A          234 WEVMTEFPQER-SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEI-------------  297 (318)
T ss_dssp             EEECCCCSSCC-BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCC-------------
T ss_pred             EEECCCCCCcc-cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccc-------------
Confidence            99998877654 4556788999999999865421        2246899999999999998  4444             


Q ss_pred             cceeEEEEeCCEEEEEe
Q 016239          319 FASLKCVGLGNLIYVFN  335 (392)
Q Consensus       319 ~~~~~~~~~~~~i~v~g  335 (392)
                      |..++++.++++|||+.
T Consensus       298 r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          298 RYASGASCLATRLNLFK  314 (318)
T ss_dssp             GGGTTCEEEEEEEEGGG
T ss_pred             cccccceeeCCEEEEEE
Confidence            34788889999999875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.2e-33  Score=263.51  Aligned_cols=247  Identities=14%  Similarity=0.085  Sum_probs=192.7

Q ss_pred             eCCCCCCCCCcceEEeecceEEeecCc-----ceEecCC-cCceeecCCCC-cCccCceEEEEEcCCCCcccccCCcccC
Q 016239           92 HLPPAQEPRAGSCFIGANGFFFTTTPR-----FGFSRIL-NTSWHLTSPLR-FSRINPLVGVFYDHDRGHCDLASGFACN  164 (392)
Q Consensus        92 ~~~~~~~~r~~~~~~~~~g~i~v~gg~-----~~ynp~~-~~~W~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~  164 (392)
                      .+++||.+|.+++++..++.||++||.     ++||+.+ +++|+.++++| .+|..|+++++                 
T Consensus         2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-----------------   64 (357)
T 2uvk_A            2 VLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-----------------   64 (357)
T ss_dssp             CSCCCSSCCCSCEEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-----------------
T ss_pred             CCCCCCccccceEEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-----------------
Confidence            578899999988888889999999983     8999972 48999999999 89999999999                 


Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCC-CCCCCCCCccceeeEEECCEEEEEeecc---------
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLP-ADFRSGYSSQYLSSALFRGRFYVFGIYS---------  234 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~g~ly~~gg~~---------  234 (392)
                      +++||++||....+. .......++++||+.+++|+.+++++ .+ |..     ++++.++++||++||..         
T Consensus        65 ~~~lyv~GG~~~~~~-~~~~~~~~v~~yd~~~~~W~~~~~~~p~~-r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~  137 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSE-GLTQVFNDVHKYNPKTNSWVKLMSHAPMG-MAG-----HVTFVHNGKAYVTGGVNQNIFNGYFE  137 (357)
T ss_dssp             TTEEEEECCEEECTT-SCEEECCCEEEEETTTTEEEECSCCCSSC-CSS-----EEEEEETTEEEEEECCCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCC-ccceeeccEEEEeCCCCcEEECCCCCCcc-ccc-----ceEEEECCEEEEEeCcCCCcCccccc
Confidence            999999999722000 01133568999999999999999888 55 665     78888999999999953         


Q ss_pred             ------------------------------cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCce
Q 016239          235 ------------------------------FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSF  284 (392)
Q Consensus       235 ------------------------------~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~  284 (392)
                                                    +.+++||+.+++|+.+..++..++..++++..+++||++||.........
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  217 (357)
T 2uvk_A          138 DLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTD  217 (357)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECC
T ss_pred             chhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccC
Confidence                                          58999999999999998877656665777889999999998654433356


Q ss_pred             eEEEeec--CccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccC----------------CCCeEE
Q 016239          285 NLWKVDE--LSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK----------------KYPACV  346 (392)
Q Consensus       285 ~v~~~d~--~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~----------------~~~~~~  346 (392)
                      ++|.||.  .+++|+++..+|..+           ++..++++..+++|||+||....                ......
T Consensus       218 ~v~~~d~d~~~~~W~~~~~~~~~~-----------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~  286 (357)
T 2uvk_A          218 AVFELDFTGNNLKWNKLAPVSSPD-----------GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS  286 (357)
T ss_dssp             CEEEEECC---CEEEECCCSSTTT-----------CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEEC
T ss_pred             ceEEEEecCCCCcEEecCCCCCCc-----------ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceee
Confidence            7777765  899999999987553           25577899999999999995321                111122


Q ss_pred             EE-eecCCCccceeeeecCCCCCcccccceEE
Q 016239          347 CE-IGTESDKCRCSWRRLPQLPSPVNEFHKVI  377 (392)
Q Consensus       347 ~~-~d~~~~~~~~~W~~~~~~p~~~~~~~~~~  377 (392)
                      ++ +|+++++    |+.++++|.++..+++++
T Consensus       287 ~~~yd~~~~~----W~~~~~~p~~r~~~~~~~  314 (357)
T 2uvk_A          287 TDIHLWHNGK----WDKSGELSQGRAYGVSLP  314 (357)
T ss_dssp             CEEEECC-------CEEEEECSSCCBSSEEEE
T ss_pred             EEEEecCCCc----eeeCCCCCCCcccceeEE
Confidence            34 4999999    999999999988876553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.97  E-value=3.3e-30  Score=259.31  Aligned_cols=238  Identities=13%  Similarity=0.097  Sum_probs=190.6

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCC-C-----CCCCCCcceEEee--cceEEeecCc----------ceEe
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLP-P-----AQEPRAGSCFIGA--NGFFFTTTPR----------FGFS  122 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~-~-----~~~~r~~~~~~~~--~g~i~v~gg~----------~~yn  122 (392)
                      .++.+|++||... ..++++++||+.+++|..++ +     +|.+|..|+++..  +|.||++||.          ++||
T Consensus       396 ~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            6788999999877 77789999999999999987 5     7889999999999  9999999983          8999


Q ss_pred             cCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecC
Q 016239          123 RILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELC  202 (392)
Q Consensus       123 p~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~  202 (392)
                      +. +++|+.++++|.+|..|+++++.                +++||++||...       ..  ++++||+.+++|+.+
T Consensus       475 ~~-t~~W~~~~~~p~~R~~h~~~~~~----------------~~~iyv~GG~~~-------~~--~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          475 MK-TREWSMIKSLSHTRFRHSACSLP----------------DGNVLILGGVTE-------GP--AMLLYNVTEEIFKDV  528 (695)
T ss_dssp             TT-TTEEEECCCCSBCCBSCEEEECT----------------TSCEEEECCBCS-------SC--SEEEEETTTTEEEEC
T ss_pred             CC-CCcEEECCCCCCCcccceEEEEc----------------CCEEEEECCCCC-------CC--CEEEEECCCCceEEc
Confidence            99 79999999999999999999842                889999999731       12  799999999999999


Q ss_pred             CC---CCCCCCCCCCccceeeEEEC---CEEEEEeecc-------cEEEEEECCCCc------eeecccCCCCcccceeE
Q 016239          203 PP---LPADFRSGYSSQYLSSALFR---GRFYVFGIYS-------FSVSSFDLKKHV------WSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       203 ~~---~~~~~~~~~~~~~~~~~~~~---g~ly~~gg~~-------~~i~~yd~~~~~------W~~i~~~~~~~~~~~~~  263 (392)
                      ++   +|.+ |.+     +++++++   ++||++||..       +.+++||+.+++      |+.+..+++..+..+.+
T Consensus       529 ~~~g~~p~~-r~~-----~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~  602 (695)
T 2zwa_A          529 TPKDEFFQN-SLV-----SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI  602 (695)
T ss_dssp             CCSSGGGGS-CCB-----SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred             cCCCCCCCc-ccc-----eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence            86   7776 665     6767766   8999999972       579999999999      88887754434455666


Q ss_pred             EeeC-CeEEEEEeecCCC--CCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCC-EEEEEecc
Q 016239          264 IASP-NMLVLAGMCNAPR--GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGN-LIYVFNEE  337 (392)
Q Consensus       264 ~~~~-g~l~v~gg~~~~~--~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~gg~  337 (392)
                      ++.+ ++||++||.....  ....+++.||+.+++|+.+ .+|.....     .+.+.+..++++.+++ +|||+||.
T Consensus       603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~~p~~~~~-----~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI-PISRRIWE-----DHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEEC-CCCHHHHH-----HSCCCCSSCEEECC---CEEEECCE
T ss_pred             EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEe-eccccccC-----CCCccceeeeEEEeCCCEEEEEeCC
Confidence            7788 9999999975443  2356788999999999954 56655321     1112345677777776 99999995

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.97  E-value=8.3e-31  Score=263.19  Aligned_cols=299  Identities=12%  Similarity=0.086  Sum_probs=217.8

Q ss_pred             HHHhhccchhhhhhhcCcchhhHhhhccCCCC-CCEEEEEcccCCCC------CCCceeeeeCCCCceeeCCCCCCCCCc
Q 016239           30 LIRASSVCKSWRSIISAPSFSALIAHNTNASP-RPWFFLFGLHNTSS------RNNQSFAFDPASNSWFHLPPAQEPRAG  102 (392)
Q Consensus        30 l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~-~~~l~~~gg~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~r~~  102 (392)
                      +..+++...+|..+...|.    ..++.+... ++.+|++||.....      ....+++||+.+++|..++.++.+|..
T Consensus       168 ~~~~dp~~~~W~~~~~~P~----~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~  243 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPI----VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM  243 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSS----CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC
T ss_pred             cccCCCCCCeeeeeccCCC----CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC
Confidence            4567788899998887765    112233333 88999999975432      224689999999999999888888766


Q ss_pred             ce--EE-eecceEEeecC-----cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEece
Q 016239          103 SC--FI-GANGFFFTTTP-----RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGV  174 (392)
Q Consensus       103 ~~--~~-~~~g~i~v~gg-----~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~  174 (392)
                      ++  ++ ..+|.||++||     +++|||. +++|..+++|+.+|..|+++++.                +++||++||.
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-t~~W~~~~~~~~~R~~~s~~~~~----------------dg~iyv~GG~  306 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSS-SDSWIPGPDMQVARGYQSSATMS----------------DGRVFTIGGS  306 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGG-GTEEEECCCCSSCCSSCEEEECT----------------TSCEEEECCC
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCc-CCceeECCCCCccccccceEEec----------------CCeEEEEeCc
Confidence            54  33 35899999999     4899999 79999999999999999888772                7899999994


Q ss_pred             eecCcccccccceEEEEEeCCCCCeecCC-----CCCCCCCCCCCccceeeEEECCEEEEEeecc---------cEEEEE
Q 016239          175 RFIGGLVDIEDRLAVEIYDPHSDSWELCP-----PLPADFRSGYSSQYLSSALFRGRFYVFGIYS---------FSVSSF  240 (392)
Q Consensus       175 ~~~~~~~~~~~~~~~~~yd~~~~~W~~~~-----~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---------~~i~~y  240 (392)
                      ..     ......++++||+.+++|+.++     +++.. +.      ++++..++++|++||..         ..++.|
T Consensus       307 ~~-----~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~-~~------~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~y  374 (656)
T 1k3i_A          307 WS-----GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA-DK------QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY  374 (656)
T ss_dssp             CC-----SSSCCCCEEEEETTTTEEEEETTSCSGGGCCC-CT------TGGGTTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred             cc-----CCcccccceEeCCCCCcceeCCCccccccccc-cc------cceeecCCceEEEECCCCcEEEecCccceeee
Confidence            21     1224568999999999999974     33333 22      34555789999999764         368899


Q ss_pred             ECCCCceeecccCCC-------CcccceeEE--eeCCeEEEEEeecCCC----C-CceeEEEeecCccceEecc--cCCH
Q 016239          241 DLKKHVWSEVQTLRP-------PGVMFSFLI--ASPNMLVLAGMCNAPR----G-PSFNLWKVDELSMEFSEIA--IMPH  304 (392)
Q Consensus       241 d~~~~~W~~i~~~~~-------~~~~~~~~~--~~~g~l~v~gg~~~~~----~-~~~~v~~~d~~~~~W~~~~--~~p~  304 (392)
                      |+.+++|.......+       .+....+++  ..+++||++||.....    . ....++.||+.+++|+++.  .||.
T Consensus       375 d~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~  454 (656)
T 1k3i_A          375 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF  454 (656)
T ss_dssp             ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred             ecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence            999999876432221       122223222  3599999999864311    1 1236788899999999986  7887


Q ss_pred             HHHHhhcCCcccCccceeEEEEe-CCEEEEEeccccC-----CCCeEEEEe-ecCCCccceeeeecCCCCCcccccceEE
Q 016239          305 DFLYSLVDTEEDDKFASLKCVGL-GNLIYVFNEEYHK-----KYPACVCEI-GTESDKCRCSWRRLPQLPSPVNEFHKVI  377 (392)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~gg~~~~-----~~~~~~~~~-d~~~~~~~~~W~~~~~~p~~~~~~~~~~  377 (392)
                      .             |..++++++ +++|||+||....     ......+++ |+++++    |+.++++|.+|..|++++
T Consensus       455 ~-------------R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~  517 (656)
T 1k3i_A          455 A-------------RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISL  517 (656)
T ss_dssp             C-------------CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEE
T ss_pred             C-------------cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhh
Confidence            6             446676666 9999999996432     112233444 999999    999999999999997665


Q ss_pred             E
Q 016239          378 S  378 (392)
Q Consensus       378 ~  378 (392)
                      +
T Consensus       518 l  518 (656)
T 1k3i_A          518 L  518 (656)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.95  E-value=8.1e-27  Score=234.66  Aligned_cols=232  Identities=9%  Similarity=0.067  Sum_probs=176.5

Q ss_pred             eeeCCCCCCCCCcceEEeecceEEeecC--------cceEecCCcCceeecC-C-----CCcCccCceEEEEEcCCCCcc
Q 016239           90 WFHLPPAQEPRAGSCFIGANGFFFTTTP--------RFGFSRILNTSWHLTS-P-----LRFSRINPLVGVFYDHDRGHC  155 (392)
Q Consensus        90 W~~~~~~~~~r~~~~~~~~~g~i~v~gg--------~~~ynp~~~~~W~~~~-~-----~~~~r~~~~~~~~~~~~~~~~  155 (392)
                      |...+..+..|.++ +++.++.||++||        +++||+. +++|+.++ +     +|.+|..|+++++..      
T Consensus       379 ~~~~~~~p~rr~g~-~~~~~~~iyv~GG~~~~~~~~v~~yd~~-~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~------  450 (695)
T 2zwa_A          379 LLECECPINRKFGD-VDVAGNDVFYMGGSNPYRVNEILQLSIH-YDKIDMKNIEVSSSEVPVARMCHTFTTISR------  450 (695)
T ss_dssp             EEECCCTTCCBSCE-EEECSSCEEEECCBSSSBCCCEEEEEEC-SSCEEEEECCCCCSCCCCCCBSCEEEEETT------
T ss_pred             EeccCCCCCCceeE-EEEECCEEEEECCCCCCCcCcEEEEECC-CCeEEEeccCCCCCCCCccccceEEEEEcc------
Confidence            44445555555544 4448999999999        3899999 79999988 5     789999999998821      


Q ss_pred             cccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecc
Q 016239          156 DLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYS  234 (392)
Q Consensus       156 ~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~  234 (392)
                               +++||++||....     .....++++||+.+++|+.++++|.+ |..     |+++.+ +++||++||..
T Consensus       451 ---------~~~lyv~GG~~~~-----~~~~~dv~~yd~~t~~W~~~~~~p~~-R~~-----h~~~~~~~~~iyv~GG~~  510 (695)
T 2zwa_A          451 ---------NNQLLLIGGRKAP-----HQGLSDNWIFDMKTREWSMIKSLSHT-RFR-----HSACSLPDGNVLILGGVT  510 (695)
T ss_dssp             ---------TTEEEEECCBSST-----TCBCCCCEEEETTTTEEEECCCCSBC-CBS-----CEEEECTTSCEEEECCBC
T ss_pred             ---------CCEEEEEcCCCCC-----CCccccEEEEeCCCCcEEECCCCCCC-ccc-----ceEEEEcCCEEEEECCCC
Confidence                     4689999998421     12356899999999999999999987 776     788886 99999999976


Q ss_pred             c--EEEEEECCCCceeeccc---CCCCcccceeEEeeC---CeEEEEEeecCCC-CCceeEEEeecCccc------eEec
Q 016239          235 F--SVSSFDLKKHVWSEVQT---LRPPGVMFSFLIASP---NMLVLAGMCNAPR-GPSFNLWKVDELSME------FSEI  299 (392)
Q Consensus       235 ~--~i~~yd~~~~~W~~i~~---~~~~~~~~~~~~~~~---g~l~v~gg~~~~~-~~~~~v~~~d~~~~~------W~~~  299 (392)
                      .  .+++||+.+++|+.++.   +|..+.. +++++++   ++||++||..... ....++|+||+.+++      |+++
T Consensus       511 ~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~-~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~  589 (695)
T 2zwa_A          511 EGPAMLLYNVTEEIFKDVTPKDEFFQNSLV-SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKK  589 (695)
T ss_dssp             SSCSEEEEETTTTEEEECCCSSGGGGSCCB-SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEE
T ss_pred             CCCCEEEEECCCCceEEccCCCCCCCcccc-eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEc
Confidence            4  79999999999999976   4444444 4434545   8999999975443 335789999999999      8998


Q ss_pred             ccCCHHHHHhhcCCcccCccceeEEEEeC-CEEEEEeccccCC---CCeEEEEeecCCCccceeeeecCCCC
Q 016239          300 AIMPHDFLYSLVDTEEDDKFASLKCVGLG-NLIYVFNEEYHKK---YPACVCEIGTESDKCRCSWRRLPQLP  367 (392)
Q Consensus       300 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~gg~~~~~---~~~~~~~~d~~~~~~~~~W~~~~~~p  367 (392)
                      ..+|..            +|..++++.++ ++|||+||.....   ....+..+|+++++    |+.+ ++|
T Consensus       590 ~~~p~~------------~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~----W~~~-~~p  644 (695)
T 2zwa_A          590 LQHPLF------------QRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET----LTSI-PIS  644 (695)
T ss_dssp             EECGGG------------CCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE----EEEC-CCC
T ss_pred             CCCCCC------------CcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe----EEEe-ecc
Confidence            886532            25688888888 9999999954221   23344556999999    9964 444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=1.6e-27  Score=239.32  Aligned_cols=269  Identities=10%  Similarity=-0.014  Sum_probs=193.2

Q ss_pred             hhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEe
Q 016239           28 PTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIG  107 (392)
Q Consensus        28 ~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  107 (392)
                      .++..+++..++|+.+...|.....+.+..+...++.||++||...    .++++||+.+++|..+++|+.+|..++++.
T Consensus       219 ~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~  294 (656)
T 1k3i_A          219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSAT  294 (656)
T ss_dssp             EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCCSSCCSSCEEEE
T ss_pred             EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC----CceEEecCcCCceeECCCCCccccccceEE
Confidence            3567788999999988765542222222233457889999999764    368999999999999999999999999888


Q ss_pred             e-cceEEeecCc----------ceEecCCcCceeecC-----CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEE
Q 016239          108 A-NGFFFTTTPR----------FGFSRILNTSWHLTS-----PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVV  171 (392)
Q Consensus       108 ~-~g~i~v~gg~----------~~ynp~~~~~W~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~  171 (392)
                      + +|.||++||.          ++|||. +++|+.++     +++..|.. +++..                 ++++|++
T Consensus       295 ~~dg~iyv~GG~~~~~~~~~~~e~yd~~-t~~W~~~~~~~~~p~~~~~~~-~~~~~-----------------~~~iyv~  355 (656)
T 1k3i_A          295 MSDGRVFTIGGSWSGGVFEKNGEVYSPS-SKTWTSLPNAKVNPMLTADKQ-GLYRS-----------------DNHAWLF  355 (656)
T ss_dssp             CTTSCEEEECCCCCSSSCCCCEEEEETT-TTEEEEETTSCSGGGCCCCTT-GGGTT-----------------TCSCCEE
T ss_pred             ecCCeEEEEeCcccCCcccccceEeCCC-CCcceeCCCcccccccccccc-ceeec-----------------CCceEEE
Confidence            8 9999999992          899999 79999974     45555432 33334                 8899999


Q ss_pred             eceeecCcccccccceEEEEEeCCCCCeecCCCC-CC-----CCCCCCCccceeeEE---ECCEEEEEeeccc-------
Q 016239          172 GGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-PA-----DFRSGYSSQYLSSAL---FRGRFYVFGIYSF-------  235 (392)
Q Consensus       172 gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~-----~~~~~~~~~~~~~~~---~~g~ly~~gg~~~-------  235 (392)
                      ||.+...  .......+++.||+.++.|...... +.     +.+.     .+.++.   .+++||++||...       
T Consensus       356 Gg~~g~~--~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~-----~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          356 GWKKGSV--FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM-----CGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             ECGGGCE--EECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB-----TCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             ECCCCcE--EEecCccceeeeecCCcceeecCCccccccccCCCCC-----CCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            9863110  0111345899999999998754221 11     0011     134443   4899999999631       


Q ss_pred             ----EEEEEECCCCceeecc--cCCCCcccceeEEeeCCeEEEEEeecCC-----CCCceeEEEeecCccceEecccCCH
Q 016239          236 ----SVSSFDLKKHVWSEVQ--TLRPPGVMFSFLIASPNMLVLAGMCNAP-----RGPSFNLWKVDELSMEFSEIAIMPH  304 (392)
Q Consensus       236 ----~i~~yd~~~~~W~~i~--~~~~~~~~~~~~~~~~g~l~v~gg~~~~-----~~~~~~v~~~d~~~~~W~~~~~~p~  304 (392)
                          .++.||+.+++|..+.  .++..+..+.+++..+|+||++||....     ......++.||+.+++|+.+..+|.
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~  508 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI  508 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence                7899999999999986  6665555444434449999999986422     1224567788999999999998886


Q ss_pred             HHHHhhcCCcccCccceeEEEEe--CCEEEEEecccc
Q 016239          305 DFLYSLVDTEEDDKFASLKCVGL--GNLIYVFNEEYH  339 (392)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~gg~~~  339 (392)
                      .             |..++++++  +++||++||...
T Consensus       509 ~-------------R~~hs~a~ll~dg~v~v~GG~~~  532 (656)
T 1k3i_A          509 V-------------RVYHSISLLLPDGRVFNGGGGLC  532 (656)
T ss_dssp             C-------------CCTTEEEEECTTSCEEEEECCCC
T ss_pred             c-------------cccccHhhcCCCcEEEecCCCCC
Confidence            6             446666666  999999999643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.96  E-value=1.3e-07  Score=89.82  Aligned_cols=45  Identities=20%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             CcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239            8 SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      ..+..||+|++..||++|+.+++.++..|||+|+.++.++.+++.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~   61 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE   61 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhh
Confidence            458899999999999999999999999999999999988766554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.94  E-value=7.4e-08  Score=91.24  Aligned_cols=44  Identities=34%  Similarity=0.471  Sum_probs=38.5

Q ss_pred             CcccCCcHH----HHHHHHhhCChhhHHHhhccchhhhhhhcCcchhh
Q 016239            8 SAFTTLSTD----ITERILSLLPIPTLIRASSVCKSWRSIISAPSFSA   51 (392)
Q Consensus         8 ~~~~~Lp~d----l~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~   51 (392)
                      ..+..||+|    |+..||++|+.++|.++..|||+|+.++.++.+++
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            357889999    99999999999999999999999999887665443

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.89  E-value=1e-09  Score=70.99  Aligned_cols=47  Identities=30%  Similarity=0.544  Sum_probs=39.7

Q ss_pred             CCCcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhH
Q 016239            6 PYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSAL   52 (392)
Q Consensus         6 ~~~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~   52 (392)
                      +...|..||+|++.+||++||.+++.+++.|||+|+.++.++.+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~   51 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence            34679999999999999999999999999999999999999887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.84  E-value=7.1e-07  Score=84.96  Aligned_cols=43  Identities=26%  Similarity=0.475  Sum_probs=38.4

Q ss_pred             CcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcC-cchh
Q 016239            8 SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISA-PSFS   50 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~-~~f~   50 (392)
                      ..+..||+||+.+||++||++++.++..|||+|+.++.+ +..+
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w   56 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW   56 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            357889999999999999999999999999999999987 5433

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.56  E-value=3.4e-08  Score=86.92  Aligned_cols=48  Identities=21%  Similarity=0.465  Sum_probs=44.9

Q ss_pred             CcccCCcHHHHHHHHhhCChhhHH-HhhccchhhhhhhcCcchhhHhhh
Q 016239            8 SAFTTLSTDITERILSLLPIPTLI-RASSVCKSWRSIISAPSFSALIAH   55 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP~~~l~-~~~~v~k~W~~l~~~~~f~~~~~~   55 (392)
                      ..+..||+||+.+||++||.++|+ ++++|||+|+.|+.+|.|++.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence            578899999999999999999999 999999999999999999988654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.13  E-value=0.0015  Score=59.00  Aligned_cols=223  Identities=11%  Similarity=0.012  Sum_probs=123.0

Q ss_pred             CCceeeeeCCCCceeeCC-----CCCCCCCcceEEeecceEEeecC----cceEecCCcCce-eecCCCCcCccCceEEE
Q 016239           77 NNQSFAFDPASNSWFHLP-----PAQEPRAGSCFIGANGFFFTTTP----RFGFSRILNTSW-HLTSPLRFSRINPLVGV  146 (392)
Q Consensus        77 ~~~~~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~~g~i~v~gg----~~~ynp~~~~~W-~~~~~~~~~r~~~~~~~  146 (392)
                      ...+..+|+++++...--     ..+.......++..++.+|+...    +.++|+. +.+- .+++....+   ..+++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~-t~~~~~~i~~~~~p---~~i~~   91 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDIN-TFKEVGRITGFTSP---RYIHF   91 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETT-TCCEEEEEECCSSE---EEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECc-ccEEEEEcCCCCCC---cEEEE
Confidence            467889999988865321     11111222356667899998853    4789998 5554 344332222   23333


Q ss_pred             EEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCE
Q 016239          147 FYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR  226 (392)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  226 (392)
                      ..                ++++|+....           ...+.++|+.+++-...-+.... . +........+..+++
T Consensus        92 ~~----------------~g~lyv~~~~-----------~~~v~~iD~~t~~~~~~i~~g~~-~-~~~~~p~~i~~~~~~  142 (328)
T 3dsm_A           92 LS----------------DEKAYVTQIW-----------DYRIFIINPKTYEITGYIECPDM-D-MESGSTEQMVQYGKY  142 (328)
T ss_dssp             EE----------------TTEEEEEEBS-----------CSEEEEEETTTTEEEEEEECTTC-C-TTTCBCCCEEEETTE
T ss_pred             eC----------------CCeEEEEECC-----------CCeEEEEECCCCeEEEEEEcCCc-c-ccCCCcceEEEECCE
Confidence            21                6699998632           12688999988764321111110 0 000001344457899


Q ss_pred             EEEEee-cccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCC----CceeEEEeecCccceEeccc
Q 016239          227 FYVFGI-YSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRG----PSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       227 ly~~gg-~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~----~~~~v~~~d~~~~~W~~~~~  301 (392)
                      +|+... ..+.|.++|+.+++....-......  ....+.-+|++|+.........    ....|+++|+.+.+....-.
T Consensus       143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p--~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          143 VYVNCWSYQNRILKIDTETDKVVDELTIGIQP--TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             EEEEECTTCCEEEEEETTTTEEEEEEECSSCB--CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc--cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            999874 4679999999988754432221111  1222344789888763221110    02568888998876554333


Q ss_pred             CCHHHHHhhcCCcccCccceeEEEEe--CCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          302 MPHDFLYSLVDTEEDDKFASLKCVGL--GNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       302 ~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      ++..             .....++..  ++.+|+..+        .++.+|+++++
T Consensus       221 ~~~g-------------~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~  255 (328)
T 3dsm_A          221 FKLG-------------DWPSEVQLNGTRDTLYWINN--------DIWRMPVEADR  255 (328)
T ss_dssp             CCTT-------------CCCEEEEECTTSCEEEEESS--------SEEEEETTCSS
T ss_pred             cCCC-------------CCceeEEEecCCCEEEEEcc--------EEEEEECCCCc
Confidence            3321             013344443  778888764        23445777766

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.80  E-value=0.0011  Score=56.66  Aligned_cols=157  Identities=14%  Similarity=0.074  Sum_probs=95.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.+|+..|..         ..+.+.++|+++++=..--+++.. ..+     .+.+..+++||++....+.+++||+++
T Consensus        30 ~~~LyestG~~---------g~S~v~~vD~~tgkv~~~~~l~~~-~fg-----eGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           30 RGHLYESTGET---------GRSSVRKVDLETGRILQRAEVPPP-YFG-----AGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             TTEEEEEECCT---------TSCEEEEEETTTCCEEEEEECCTT-CCE-----EEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCEEEEECCCC---------CCceEEEEECCCCCEEEEEeCCCC-cce-----eEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            88999988862         234789999999876544445443 232     566778999999998889999999987


Q ss_pred             CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe---cccCCHHHHHhhcCCcccCccce
Q 016239          245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE---IAIMPHDFLYSLVDTEEDDKFAS  321 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~---~~~~p~~~~~~~~~~~~~~~~~~  321 (392)
                      .+-..  ..+... ....++.-+++||+..|       +..|+.+|+++.+-..   +..-+..+            ..-
T Consensus        95 l~~~~--ti~~~~-~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~------------~~l  152 (243)
T 3mbr_X           95 LTPRA--RFRYPG-EGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPL------------DNL  152 (243)
T ss_dssp             TEEEE--EEECSS-CCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEEC------------CCE
T ss_pred             CcEEE--EEeCCC-CceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCccc------------ccc
Confidence            65332  222111 23445555778888754       3457778998764221   11111111            012


Q ss_pred             eEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecC
Q 016239          322 LKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLP  364 (392)
Q Consensus       322 ~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~  364 (392)
                      -.+...+++||+-...     ...+..+|+++++... |-.++
T Consensus       153 NeLe~~~G~lyanvw~-----s~~I~vIDp~tG~V~~-~idl~  189 (243)
T 3mbr_X          153 NELEWVNGELLANVWL-----TSRIARIDPASGKVVA-WIDLQ  189 (243)
T ss_dssp             EEEEEETTEEEEEETT-----TTEEEEECTTTCBEEE-EEECG
T ss_pred             eeeEEeCCEEEEEECC-----CCeEEEEECCCCCEEE-EEECC
Confidence            2344569999976531     1234556998887333 44433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.62  E-value=0.004  Score=53.75  Aligned_cols=159  Identities=11%  Similarity=-0.068  Sum_probs=93.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.+|+..|..         ..+.+.++|+++++=..--+++.. ..+     .+.+..+++||+.....+.+++||+++
T Consensus        52 ~~~LyestG~~---------g~S~v~~vD~~Tgkv~~~~~l~~~-~Fg-----eGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           52 NGYFYESTGLN---------GRSSIRKVDIESGKTLQQIELGKR-YFG-----EGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             TTEEEEEEEET---------TEEEEEEECTTTCCEEEEEECCTT-CCE-----EEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCEEEEECCCC---------CCceEEEEECCCCcEEEEEecCCc-cce-----eEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            77999988862         234789999998875433344433 222     456678999999998889999999987


Q ss_pred             Cceee-cccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeE
Q 016239          245 HVWSE-VQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLK  323 (392)
Q Consensus       245 ~~W~~-i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~  323 (392)
                      .+-.. ++. +.   ....++.-+++||+..|       +..++.+|+.+.+-.  .+++.....+.+       ..--.
T Consensus       117 ~~~~~ti~~-~~---eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~--~~I~V~~~g~~~-------~~lNE  176 (262)
T 3nol_A          117 LRQVRSFNY-DG---EGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPV--RTITVTAHGEEL-------PELNE  176 (262)
T ss_dssp             CCEEEEEEC-SS---CCCCEEECSSCEEECCS-------SSEEEEECTTTCSEE--EEEECEETTEEC-------CCEEE
T ss_pred             CcEEEEEEC-CC---CceEEecCCCEEEEECC-------CCeEEEEcCCCCeEE--EEEEeccCCccc-------cccce
Confidence            65332 322 11   22345555677787644       346778899876522  222111000000       00112


Q ss_pred             EEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeecC
Q 016239          324 CVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLP  364 (392)
Q Consensus       324 ~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~  364 (392)
                      +...+++||+-...     .-.+..+|+++++... |-.++
T Consensus       177 Le~~~G~lyan~w~-----~~~I~vIDp~tG~V~~-~Id~~  211 (262)
T 3nol_A          177 LEWVDGEIFANVWQ-----TNKIVRIDPETGKVTG-IIDLN  211 (262)
T ss_dssp             EEEETTEEEEEETT-----SSEEEEECTTTCBEEE-EEECT
T ss_pred             eEEECCEEEEEEcc-----CCeEEEEECCCCcEEE-EEECC
Confidence            44558999976531     1234556999887433 33443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.54  E-value=0.049  Score=49.70  Aligned_cols=228  Identities=11%  Similarity=0.120  Sum_probs=124.5

Q ss_pred             CCCCCCEEEEEcccCCCCCCCceeeeeCCCCc--eeeCCCCC-------CCCCcceEEeecceEEeecC---cceEecCC
Q 016239           58 NASPRPWFFLFGLHNTSSRNNQSFAFDPASNS--WFHLPPAQ-------EPRAGSCFIGANGFFFTTTP---RFGFSRIL  125 (392)
Q Consensus        58 ~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~--W~~~~~~~-------~~r~~~~~~~~~g~i~v~gg---~~~ynp~~  125 (392)
                      +...++.+|+....      ..+.+||+++++  |..-....       ........+..++.||+...   ++.+|+. 
T Consensus        49 p~v~~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~-  121 (376)
T 3q7m_A           49 PALADNVVYAADRA------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTS-  121 (376)
T ss_dssp             CEEETTEEEEECTT------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETT-
T ss_pred             cEEECCEEEEEcCC------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECC-
Confidence            34456777776431      468899987665  65432111       11112234556889998743   5889987 


Q ss_pred             cC--ceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC--eec
Q 016239          126 NT--SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WEL  201 (392)
Q Consensus       126 ~~--~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~  201 (392)
                      ++  .|+.-.+-.   .....++.                 ++.+|+....            ..+..+|..+++  |+.
T Consensus       122 tG~~~W~~~~~~~---~~~~p~~~-----------------~~~v~v~~~~------------g~l~~~d~~tG~~~W~~  169 (376)
T 3q7m_A          122 DGTVAWQTKVAGE---ALSRPVVS-----------------DGLVLIHTSN------------GQLQALNEADGAVKWTV  169 (376)
T ss_dssp             TCCEEEEEECSSC---CCSCCEEE-----------------TTEEEEECTT------------SEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEeCCCc---eEcCCEEE-----------------CCEEEEEcCC------------CeEEEEECCCCcEEEEE
Confidence            45  576432211   11222344                 7777775432            158889987765  876


Q ss_pred             CCCCCC-CCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCCc-------ccceeEEeeCCeEE
Q 016239          202 CPPLPA-DFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPG-------VMFSFLIASPNMLV  271 (392)
Q Consensus       202 ~~~~~~-~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~-------~~~~~~~~~~g~l~  271 (392)
                      -...+. ..+..     ...+..++.+|+ |...+.+.+||+.++  .|+.-...+...       ......+..++.||
T Consensus       170 ~~~~~~~~~~~~-----~~~~~~~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~  243 (376)
T 3q7m_A          170 NLDMPSLSLRGE-----SAPTTAFGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF  243 (376)
T ss_dssp             ECCC-----CCC-----CCCEEETTEEEE-CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred             eCCCCceeecCC-----CCcEEECCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence            543221 11111     345566788776 445678999999766  566532222100       01122345688888


Q ss_pred             EEEeecCCCCCceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEe
Q 016239          272 LAGMCNAPRGPSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEI  349 (392)
Q Consensus       272 v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~  349 (392)
                      +.+.       ...++.+|..+.  .|+.-.  +                .....+..++.||+...  .+.    ++-+
T Consensus       244 ~~~~-------~g~l~~~d~~tG~~~w~~~~--~----------------~~~~~~~~~~~l~~~~~--~g~----l~~~  292 (376)
T 3q7m_A          244 ALAY-------NGNLTALDLRSGQIMWKREL--G----------------SVNDFIVDGNRIYLVDQ--NDR----VMAL  292 (376)
T ss_dssp             EECT-------TSCEEEEETTTCCEEEEECC--C----------------CEEEEEEETTEEEEEET--TCC----EEEE
T ss_pred             EEec-------CcEEEEEECCCCcEEeeccC--C----------------CCCCceEECCEEEEEcC--CCe----EEEE
Confidence            7652       234666787554  476421  1                12345667999999863  111    2344


Q ss_pred             ecCCCccceeeeec
Q 016239          350 GTESDKCRCSWRRL  363 (392)
Q Consensus       350 d~~~~~~~~~W~~~  363 (392)
                      |+.+++  ..|+.-
T Consensus       293 d~~tG~--~~w~~~  304 (376)
T 3q7m_A          293 TIDGGV--TLWTQS  304 (376)
T ss_dssp             ETTTCC--EEEEEC
T ss_pred             ECCCCc--EEEeec
Confidence            777765  558763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.53  E-value=0.0023  Score=55.25  Aligned_cols=189  Identities=7%  Similarity=-0.087  Sum_probs=103.2

Q ss_pred             eEEeecceEEeecCc------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeec
Q 016239          104 CFIGANGFFFTTTPR------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFI  177 (392)
Q Consensus       104 ~~~~~~g~i~v~gg~------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~  177 (392)
                      ++...++.+|+.+|.      .++|+. +++-...-+++..-...+++..                 ++++|+....   
T Consensus        47 GL~~~~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~~~~FgeGit~~-----------------g~~ly~ltw~---  105 (262)
T 3nol_A           47 GFFYRNGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELGKRYFGEGISDW-----------------KDKIVGLTWK---  105 (262)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEECTT-TCCEEEEEECCTTCCEEEEEEE-----------------TTEEEEEESS---
T ss_pred             eEEEECCEEEEECCCCCCceEEEEECC-CCcEEEEEecCCccceeEEEEe-----------------CCEEEEEEee---
Confidence            566668899998763      688998 5654333334333233446666                 8899999643   


Q ss_pred             CcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCce-eecccCCC-
Q 016239          178 GGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVW-SEVQTLRP-  255 (392)
Q Consensus       178 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W-~~i~~~~~-  255 (392)
                              ...+.+||+.+.+=  +..++.+ ..+     .+.+.-++.||+..| ++.|..+|+++.+- ..+..... 
T Consensus       106 --------~~~v~v~D~~t~~~--~~ti~~~-~eG-----~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A          106 --------NGLGFVWNIRNLRQ--VRSFNYD-GEG-----WGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             --------SSEEEEEETTTCCE--EEEEECS-SCC-----CCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETT
T ss_pred             --------CCEEEEEECccCcE--EEEEECC-CCc-----eEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCC
Confidence                    23799999877553  2222222 122     344445667888877 67899999988643 22322111 


Q ss_pred             Ccccc-eeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEE--eCCEEE
Q 016239          256 PGVMF-SFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVG--LGNLIY  332 (392)
Q Consensus       256 ~~~~~-~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~  332 (392)
                      ..... .-+...+|+||+--..      +..|.+.|+.+.+=...-.++..... . ....+..-...+++.  .++++|
T Consensus       169 ~~~~~lNELe~~~G~lyan~w~------~~~I~vIDp~tG~V~~~Id~~~L~~~-~-~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          169 EELPELNELEWVDGEIFANVWQ------TNKIVRIDPETGKVTGIIDLNGILAE-A-GPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             EECCCEEEEEEETTEEEEEETT------SSEEEEECTTTCBEEEEEECTTGGGG-S-CSCCSSCCCEEEEEEETTTTEEE
T ss_pred             ccccccceeEEECCEEEEEEcc------CCeEEEEECCCCcEEEEEECCcCccc-c-ccccCcCCceEEEEEcCCCCEEE
Confidence            01010 1133448999964421      34777889988764333222211100 0 000000001233333  468999


Q ss_pred             EEeccc
Q 016239          333 VFNEEY  338 (392)
Q Consensus       333 v~gg~~  338 (392)
                      |.|..+
T Consensus       241 VTGK~W  246 (262)
T 3nol_A          241 VTGKLW  246 (262)
T ss_dssp             EEETTC
T ss_pred             EECCCC
Confidence            999654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.49  E-value=4.1e-05  Score=66.66  Aligned_cols=47  Identities=26%  Similarity=0.357  Sum_probs=43.4

Q ss_pred             CcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhHhh
Q 016239            8 SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIA   54 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~~~   54 (392)
                      ..+..||+|++..||+.|+++++.++..|||+|+.++.++..++.+.
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l   49 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFL   49 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHH
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            46889999999999999999999999999999999999998887754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.42  E-value=0.016  Score=52.02  Aligned_cols=152  Identities=7%  Similarity=-0.029  Sum_probs=85.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCe-ecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSW-ELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++++|+....           ...+.++|..+.+- ..++....+         ...+. -++++|+.....+.|.++|+
T Consensus        53 ~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~~~~p---------~~i~~~~~g~lyv~~~~~~~v~~iD~  112 (328)
T 3dsm_A           53 DGIGWIVVNN-----------SHVIFAIDINTFKEVGRITGFTSP---------RYIHFLSDEKAYVTQIWDYRIFIINP  112 (328)
T ss_dssp             TTEEEEEEGG-----------GTEEEEEETTTCCEEEEEECCSSE---------EEEEEEETTEEEEEEBSCSEEEEEET
T ss_pred             CCEEEEEEcC-----------CCEEEEEECcccEEEEEcCCCCCC---------cEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            8899998653           22689999987765 334322222         34444 68899999866789999999


Q ss_pred             CCCceee-cccCCC--CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCcc
Q 016239          243 KKHVWSE-VQTLRP--PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKF  319 (392)
Q Consensus       243 ~~~~W~~-i~~~~~--~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~  319 (392)
                      .+.+-.. ++....  .......++..+++||+.....     ...|.++|+.+.+....-.....              
T Consensus       113 ~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~-----~~~v~viD~~t~~~~~~i~~g~~--------------  173 (328)
T 3dsm_A          113 KTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY-----QNRILKIDTETDKVVDELTIGIQ--------------  173 (328)
T ss_dssp             TTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT-----CCEEEEEETTTTEEEEEEECSSC--------------
T ss_pred             CCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC-----CCEEEEEECCCCeEEEEEEcCCC--------------
Confidence            9886543 322110  0001223444789999885310     23566779887764432221111              


Q ss_pred             ceeEEEEeCCEEEEEeccccCCC-----CeEEEEeecCCCc
Q 016239          320 ASLKCVGLGNLIYVFNEEYHKKY-----PACVCEIGTESDK  355 (392)
Q Consensus       320 ~~~~~~~~~~~i~v~gg~~~~~~-----~~~~~~~d~~~~~  355 (392)
                      -...++..++++|+.........     ...++.+|+++++
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~  214 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT  214 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence            01222345678888763221110     1334555888777

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.35  E-value=0.028  Score=51.39  Aligned_cols=198  Identities=10%  Similarity=0.043  Sum_probs=104.0

Q ss_pred             eEEeecceEEeecC---cceEecCCcC--ceeecCCCC-------cCccCceEEEEEcCCCCcccccCCcccCCCeEEEE
Q 016239          104 CFIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLR-------FSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVV  171 (392)
Q Consensus       104 ~~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~  171 (392)
                      ..+..++.||+...   ++.+|+. ++  .|+.-....       ........++.                 ++.+|+.
T Consensus        48 ~p~v~~~~v~~~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~v~  109 (376)
T 3q7m_A           48 HPALADNVVYAADRAGLVKALNAD-DGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-----------------GGHVYIG  109 (376)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETT-TCCEEEEEECCC---CCSCCCCCEEEEEEEE-----------------TTEEEEE
T ss_pred             ccEEECCEEEEEcCCCeEEEEEcc-CCceeeeecCccccccccccCcccccCceEe-----------------CCEEEEE
Confidence            34566899998753   5789987 44  676433211       11111222333                 7788886


Q ss_pred             eceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ce
Q 016239          172 GGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VW  247 (392)
Q Consensus       172 gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W  247 (392)
                      ...            ..+..+|..+++  |+.-..-..  .       ...+..++.+|+.. ..+.|.+||..++  .|
T Consensus       110 ~~~------------g~l~a~d~~tG~~~W~~~~~~~~--~-------~~p~~~~~~v~v~~-~~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          110 SEK------------AQVYALNTSDGTVAWQTKVAGEA--L-------SRPVVSDGLVLIHT-SNGQLQALNEADGAVKW  167 (376)
T ss_dssp             ETT------------SEEEEEETTTCCEEEEEECSSCC--C-------SCCEEETTEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             cCC------------CEEEEEECCCCCEEEEEeCCCce--E-------cCCEEECCEEEEEc-CCCeEEEEECCCCcEEE
Confidence            432            258899987765  765432111  1       34456688888754 4568999999776  47


Q ss_pred             eecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEecccCCHHH--HHhhcCCcccCcccee
Q 016239          248 SEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSEIAIMPHDF--LYSLVDTEEDDKFASL  322 (392)
Q Consensus       248 ~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~~p~~~--~~~~~~~~~~~~~~~~  322 (392)
                      +.-...+. ........+..++.||+...       ...++.+|..+.  .|+.-...|...  ...+.+       ...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-------~~~  233 (376)
T 3q7m_A          168 TVNLDMPSLSLRGESAPTTAFGAAVVGGD-------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSD-------VDT  233 (376)
T ss_dssp             EEECCC-----CCCCCCEEETTEEEECCT-------TTEEEEEETTTCCEEEEEECCC-----------C-------CCC
T ss_pred             EEeCCCCceeecCCCCcEEECCEEEEEcC-------CCEEEEEECCCCcEEEEEecccCCCCcccccccc-------cCC
Confidence            66433222 11112233455777766321       235666776544  477543333211  000000       123


Q ss_pred             EEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          323 KCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       323 ~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      ..+..++.+|+.+.  .+.    ++-+|+++++  ..|+.-
T Consensus       234 ~p~~~~~~v~~~~~--~g~----l~~~d~~tG~--~~w~~~  266 (376)
T 3q7m_A          234 TPVVVNGVVFALAY--NGN----LTALDLRSGQ--IMWKRE  266 (376)
T ss_dssp             CCEEETTEEEEECT--TSC----EEEEETTTCC--EEEEEC
T ss_pred             CcEEECCEEEEEec--CcE----EEEEECCCCc--EEeecc
Confidence            34467889988762  121    2344777665  458764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.34  E-value=0.017  Score=49.40  Aligned_cols=147  Identities=8%  Similarity=0.004  Sum_probs=91.1

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecC----cceEecCCcCceeecCCCCc
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP----RFGFSRILNTSWHLTSPLRF  137 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~  137 (392)
                      ++.+|.-.|..+.   +.+..+|+++++-..--+++......+++..++.||+...    .++||+. +.+-  +...+.
T Consensus        30 ~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~-tl~~--~~ti~~  103 (243)
T 3mbr_X           30 RGHLYESTGETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA-TLTP--RARFRY  103 (243)
T ss_dssp             TTEEEEEECCTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-TTEE--EEEEEC
T ss_pred             CCEEEEECCCCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC-cCcE--EEEEeC
Confidence            4677777665432   5688999999886554444444444567777999999863    3899987 4432  222222


Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCee-cCC--CCCCCCCCCCC
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWE-LCP--PLPADFRSGYS  214 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~-~~~--~~~~~~~~~~~  214 (392)
                      +....+++.-                 ++++|+.-|.            ..+.++|+++.+-. .+.  .-+.+.+.   
T Consensus       104 ~~~Gwglt~d-----------------g~~L~vSdgs------------~~l~~iDp~t~~~~~~I~V~~~g~~~~~---  151 (243)
T 3mbr_X          104 PGEGWALTSD-----------------DSHLYMSDGT------------AVIRKLDPDTLQQVGSIKVTAGGRPLDN---  151 (243)
T ss_dssp             SSCCCEEEEC-----------------SSCEEEECSS------------SEEEEECTTTCCEEEEEECEETTEECCC---
T ss_pred             CCCceEEeeC-----------------CCEEEEECCC------------CeEEEEeCCCCeEEEEEEEccCCccccc---
Confidence            3233444433                 7788888553            26889999886532 221  11111111   


Q ss_pred             ccceeeEEECCEEEEEeecccEEEEEECCCCcee
Q 016239          215 SQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWS  248 (392)
Q Consensus       215 ~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~  248 (392)
                        .......+|+||+---.++.|.+.|+++++=.
T Consensus       152 --lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          152 --LNELEWVNGELLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             --EEEEEEETTEEEEEETTTTEEEEECTTTCBEE
T ss_pred             --ceeeEEeCCEEEEEECCCCeEEEEECCCCCEE
Confidence              12344569999977766789999999998543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.29  E-value=0.027  Score=48.67  Aligned_cols=189  Identities=8%  Similarity=-0.054  Sum_probs=103.4

Q ss_pred             eEEeecceEEeecCc----ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCc
Q 016239          104 CFIGANGFFFTTTPR----FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGG  179 (392)
Q Consensus       104 ~~~~~~g~i~v~gg~----~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~  179 (392)
                      ++...++.||+..|.    .++|+. +++-...- ++..-...+++..                 +++||+....     
T Consensus        59 GL~~~~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~~~FgeGit~~-----------------g~~Ly~ltw~-----  114 (268)
T 3nok_A           59 GLVFHQGHFFESTGHQGTLRQLSLE-SAQPVWME-RLGNIFAEGLASD-----------------GERLYQLTWT-----  114 (268)
T ss_dssp             EEEEETTEEEEEETTTTEEEECCSS-CSSCSEEE-ECTTCCEEEEEEC-----------------SSCEEEEESS-----
T ss_pred             eEEEECCEEEEEcCCCCEEEEEECC-CCcEEeEE-CCCCcceeEEEEe-----------------CCEEEEEEcc-----
Confidence            666678999999875    678988 55433222 4433233345555                 8899998543     


Q ss_pred             ccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceee-cccCC-CCc
Q 016239          180 LVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLR-PPG  257 (392)
Q Consensus       180 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~-~~~  257 (392)
                            ...+.+||..+.+=.  ..++.+ ..+     .+.+..++.||+..| ++.|..+|+++.+-.. +.... +..
T Consensus       115 ------~~~v~V~D~~Tl~~~--~ti~~~-~eG-----wGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~  179 (268)
T 3nok_A          115 ------EGLLFTWSGMPPQRE--RTTRYS-GEG-----WGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQP  179 (268)
T ss_dssp             ------SCEEEEEETTTTEEE--EEEECS-SCC-----CCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             ------CCEEEEEECCcCcEE--EEEeCC-Cce-----eEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence                  237999998765432  222222 112     455566788999887 7899999998864322 22211 101


Q ss_pred             c-cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEe--CCEEEEE
Q 016239          258 V-MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL--GNLIYVF  334 (392)
Q Consensus       258 ~-~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~  334 (392)
                      . ...-+...+|+||+--. .     +..|.+.|+.+.+=...-.+.......-.... +..-..-+++..  ++++||.
T Consensus       180 v~~lNeLe~~dG~lyanvw-~-----s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~-~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          180 VELINELECANGVIYANIW-H-----SSDVLEIDPATGTVVGVIDASALTRAVAGQVT-NPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             CCCEEEEEEETTEEEEEET-T-----CSEEEEECTTTCBEEEEEECHHHHHHHTTTCC-CTTCCEEEEEECTTTCCEEEE
T ss_pred             cccccccEEeCCEEEEEEC-C-----CCeEEEEeCCCCcEEEEEECCCCccccccccc-CcCCceEEEEEcCCCCEEEEe
Confidence            1 11123344899995432 1     34777889988764333333221110000000 000012334433  6899999


Q ss_pred             eccc
Q 016239          335 NEEY  338 (392)
Q Consensus       335 gg~~  338 (392)
                      |..+
T Consensus       253 GK~W  256 (268)
T 3nok_A          253 GKLW  256 (268)
T ss_dssp             ETTC
T ss_pred             CCCC
Confidence            9644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.21  E-value=0.018  Score=51.38  Aligned_cols=154  Identities=12%  Similarity=0.069  Sum_probs=76.7

Q ss_pred             EEEEEeCCC-CCeecCC--CCCCCCCCCCCccceeeEEE--CC-EEEEEeecccEEEEEECC--CCceeec---ccCCCC
Q 016239          188 AVEIYDPHS-DSWELCP--PLPADFRSGYSSQYLSSALF--RG-RFYVFGIYSFSVSSFDLK--KHVWSEV---QTLRPP  256 (392)
Q Consensus       188 ~~~~yd~~~-~~W~~~~--~~~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~~i~~yd~~--~~~W~~i---~~~~~~  256 (392)
                      .+.+||..+ ++...+.  .........     ...+.+  +| .+|+.+...+.|..||..  +.++..+   ...+..
T Consensus       152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          152 RICLFTVSDDGHLVAQDPAEVTTVEGAG-----PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCC-----EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             EEEEEEecCCCceeeecccccccCCCCC-----cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            588888876 6554322  111100111     222333  44 477777667889999984  3444332   222221


Q ss_pred             ---cccceeEEe-eCC-eEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEE
Q 016239          257 ---GVMFSFLIA-SPN-MLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLI  331 (392)
Q Consensus       257 ---~~~~~~~~~-~~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i  331 (392)
                         ......+.. -+| .||+.+...    ..+.+|.++..+.+++.+..++....           -...++...+..|
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~~~----~~i~v~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~s~dg~~l  291 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDRTA----SLITVFSVSEDGSVLSKEGFQPTETQ-----------PRGFNVDHSGKYL  291 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTT----TEEEEEEECTTSCCEEEEEEEECSSS-----------CCCEEECTTSSEE
T ss_pred             ccccCCccceEECCCCCEEEEEecCC----CEEEEEEEcCCCCceEEeeeecCCCc-----------cceEEECCCCCEE
Confidence               111112222 245 455544221    15777766544566666655443210           0122222234556


Q ss_pred             EEEeccccCCCCeEEEEeecCCCccceeeeecCCCCC
Q 016239          332 YVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQLPS  368 (392)
Q Consensus       332 ~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~p~  368 (392)
                      |+.+.   ....+.++++|+++++    ++.+..++.
T Consensus       292 ~~~~~---~~~~v~v~~~d~~~g~----~~~~~~~~~  321 (343)
T 1ri6_A          292 IAAGQ---KSHHISVYEIVGEQGL----LHEKGRYAV  321 (343)
T ss_dssp             EEECT---TTCEEEEEEEETTTTE----EEEEEEEEC
T ss_pred             EEecC---CCCeEEEEEEcCCCce----eeEcccccc
Confidence            66653   2355666777888888    877776655

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.19  E-value=0.0073  Score=52.21  Aligned_cols=151  Identities=11%  Similarity=-0.115  Sum_probs=89.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.+|+..|..           ..+.++|+++++=..-- ++.. ..+     .+.+..+++||+.....+.+++||+++
T Consensus        64 ~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~-l~~~-~Fg-----eGit~~g~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           64 QGHFFESTGHQ-----------GTLRQLSLESAQPVWME-RLGN-IFA-----EGLASDGERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             TTEEEEEETTT-----------TEEEECCSSCSSCSEEE-ECTT-CCE-----EEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred             CCEEEEEcCCC-----------CEEEEEECCCCcEEeEE-CCCC-cce-----eEEEEeCCEEEEEEccCCEEEEEECCc
Confidence            88999998861           13889999887643322 4332 222     446667889999998889999999987


Q ss_pred             Cceee-cccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeE
Q 016239          245 HVWSE-VQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLK  323 (392)
Q Consensus       245 ~~W~~-i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~  323 (392)
                      .+-.. ++. ++   ....++.-+++||+..|       +..++.+|+++.+-.  .+++........       ..--.
T Consensus       126 l~~~~ti~~-~~---eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~--~~I~V~~~g~~v-------~~lNe  185 (268)
T 3nok_A          126 PQRERTTRY-SG---EGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALV--GAVQVKLRGQPV-------ELINE  185 (268)
T ss_dssp             TEEEEEEEC-SS---CCCCEEEETTEEEEECS-------SSEEEEECTTTCCEE--EEEECEETTEEC-------CCEEE
T ss_pred             CcEEEEEeC-CC---ceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEE--EEEEeCCCCccc-------ccccc
Confidence            65432 332 22   22345566778888754       346777798876422  222211000000       01123


Q ss_pred             EEEeCCEEEEEeccccCCCCeEEEEeecCCCccce
Q 016239          324 CVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRC  358 (392)
Q Consensus       324 ~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~  358 (392)
                      +...+++||+-..  .   .-.+..+|+++++...
T Consensus       186 Le~~dG~lyanvw--~---s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          186 LECANGVIYANIW--H---SSDVLEIDPATGTVVG  215 (268)
T ss_dssp             EEEETTEEEEEET--T---CSEEEEECTTTCBEEE
T ss_pred             cEEeCCEEEEEEC--C---CCeEEEEeCCCCcEEE
Confidence            3455889996553  1   1234556998887433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.17  E-value=0.0002  Score=64.98  Aligned_cols=46  Identities=30%  Similarity=0.544  Sum_probs=39.5

Q ss_pred             CCCCcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchh
Q 016239            5 NPYSAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFS   50 (392)
Q Consensus         5 ~~~~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~   50 (392)
                      .|...|..||+|++.+|+.+|+.+++.++..|||+|+.+..+|..+
T Consensus         4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~   49 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTS
T ss_pred             cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhh
Confidence            3456899999999999999999999999999999999998776543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.16  E-value=0.0085  Score=54.02  Aligned_cols=191  Identities=9%  Similarity=0.027  Sum_probs=90.6

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec------CcceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT------PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH  150 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g------g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~  150 (392)
                      ..++.+|..++++..+...........++.. +|.+|+.+      .+++||.. +++++.+..............+.. 
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~-~g~~~~~~~~~~~~~~p~~~a~sp-   95 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQID-GQTAHKLNTVVAPGTPPAYVAVDE-   95 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEEEESCCCSEEEEET-
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEec-CCcEEEeeeeecCCCCCEEEEECC-
Confidence            3467788888777654322111111223333 66677764      24788886 566665544222111222222211 


Q ss_pred             CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCC-CCCeecCCCCCCC-----CCCCCCccceeeEEE-
Q 016239          151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH-SDSWELCPPLPAD-----FRSGYSSQYLSSALF-  223 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~-  223 (392)
                                   ++..+|+.+..           ...+.+||.. +++.+.+......     .+..  ......+.+ 
T Consensus        96 -------------dg~~l~~~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~s  149 (347)
T 3hfq_A           96 -------------ARQLVYSANYH-----------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD--GSHIHYTDLT  149 (347)
T ss_dssp             -------------TTTEEEEEETT-----------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS--SCCEEEEEEC
T ss_pred             -------------CCCEEEEEeCC-----------CCEEEEEEeCCCCCeeecceeecCCCCCCcccc--CCCceEEEEC
Confidence                         14456666522           1146666653 3333332211100     0110  001222333 


Q ss_pred             -CCEEEEEeecccEEEEEECC-CCceeecccC--CCCcccceeEEeeCCe-EEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          224 -RGRFYVFGIYSFSVSSFDLK-KHVWSEVQTL--RPPGVMFSFLIASPNM-LVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       224 -~g~ly~~gg~~~~i~~yd~~-~~~W~~i~~~--~~~~~~~~~~~~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                       +|++|+.+...+.|..||+. +++...+...  +....-......-+|+ ||+.+...    ..+.+|.++..+.+++.
T Consensus       150 pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          150 PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS----SQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----TEEEEEEEETTTTEEEE
T ss_pred             CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC----CEEEEEEecCCCCceEE
Confidence             67788777666789999987 5555543221  1111111222334666 66655322    26788877765566554


Q ss_pred             cc
Q 016239          299 IA  300 (392)
Q Consensus       299 ~~  300 (392)
                      +.
T Consensus       226 ~~  227 (347)
T 3hfq_A          226 LG  227 (347)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.01  E-value=0.072  Score=46.25  Aligned_cols=153  Identities=10%  Similarity=0.014  Sum_probs=86.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.+|+..|.         .....+.++|+.+++=...-+++.. ..+     .+.+..++.||+..-..+.+.+||+.+
T Consensus        31 dg~Lyvstg~---------~~~s~v~~iD~~tg~v~~~i~l~~~-~fg-----eGi~~~g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           31 NDTLFESTGL---------YGRSSVRQVALQTGKVENIHKMDDS-YFG-----EGLTLLNEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             TTEEEEEECS---------TTTCEEEEEETTTCCEEEEEECCTT-CCE-----EEEEEETTEEEEEETTCSEEEEEETTT
T ss_pred             CCeEEEECCC---------CCCCEEEEEECCCCCEEEEEecCCC-cce-----EEEEEeCCEEEEEEecCCEEEEEECCC
Confidence            3799998663         1234799999998874433223332 121     455667889999998889999999987


Q ss_pred             Cce-eecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeE
Q 016239          245 HVW-SEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLK  323 (392)
Q Consensus       245 ~~W-~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~  323 (392)
                      .+= ..++...+  . ...+..-+++||+..+       +..++.+|+.+.+  .+..++.....+..       .....
T Consensus        96 ~~v~~~i~~g~~--~-g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~--v~~~I~Vg~~~~p~-------~~~ne  156 (266)
T 2iwa_A           96 LSNIKNFTHQMK--D-GWGLATDGKILYGSDG-------TSILYEIDPHTFK--LIKKHNVKYNGHRV-------IRLNE  156 (266)
T ss_dssp             TEEEEEEECCSS--S-CCEEEECSSSEEEECS-------SSEEEEECTTTCC--EEEEEECEETTEEC-------CCEEE
T ss_pred             CcEEEEEECCCC--C-eEEEEECCCEEEEECC-------CCeEEEEECCCCc--EEEEEEECCCCccc-------cccee
Confidence            642 22322201  1 2334445677887542       3467778987754  22222211000000       01224


Q ss_pred             EEEeCCEEEEEeccccCCCCeEEEEeecCCCcc
Q 016239          324 CVGLGNLIYVFNEEYHKKYPACVCEIGTESDKC  356 (392)
Q Consensus       324 ~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~  356 (392)
                      +...+++||+-...     .-.+..+|+.+++.
T Consensus       157 le~~dg~lyvn~~~-----~~~V~vID~~tg~V  184 (266)
T 2iwa_A          157 LEYINGEVWANIWQ-----TDCIARISAKDGTL  184 (266)
T ss_dssp             EEEETTEEEEEETT-----SSEEEEEETTTCCE
T ss_pred             EEEECCEEEEecCC-----CCeEEEEECCCCcE
Confidence            44458899977642     11334558888763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.99  E-value=0.089  Score=45.12  Aligned_cols=173  Identities=10%  Similarity=-0.059  Sum_probs=84.5

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec---CcceEecCCcCceeecCCCCcCccCceEEEEEcCCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT---PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRG  153 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g---g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~  153 (392)
                      ..+..||+.+.......... .....+++.. +|.+|+..   ++.+||+. ++....+.....  .......+ +.   
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~~~~~~~~--~~p~~i~~-~~---  117 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQTVLPFDGL--NYPEGLAV-DT---  117 (270)
T ss_dssp             CEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCEECCCCSC--SSEEEEEE-CT---
T ss_pred             CcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEeeeecCCc--CCCcceEE-CC---
Confidence            45778888766544332211 1112244444 67788874   35788987 444333321110  11112222 22   


Q ss_pred             cccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEee
Q 016239          154 HCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGI  232 (392)
Q Consensus       154 ~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg  232 (392)
                                 ++++|+....           ...+.+++..+...........  ...     ...+.. +|.+|+...
T Consensus       118 -----------~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~~--~~p-----~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          118 -----------QGAVYVADRG-----------NNRVVKLAAGSKTQTVLPFTGL--NDP-----DGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             -----------TCCEEEEEGG-----------GTEEEEECTTCCSCEECCCCSC--CSC-----CCEEECTTCCEEEEEG
T ss_pred             -----------CCCEEEEECC-----------CCEEEEEECCCceeEeeccccC--CCc-----eeEEEeCCCCEEEEEC
Confidence                       5678887432           1257778766654433221111  110     223332 578998877


Q ss_pred             cccEEEEEECCCCceeecccCCCCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          233 YSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       233 ~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ..+.|..||+....-........  .....++. -+|.||+....      ...|+++|+.+..
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~g~l~v~~~~------~~~v~~~~~~~~~  224 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQVVLPFTDI--TAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTT  224 (270)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSC--CSEEEEEECTTCCEEEEETT------TSCEEEECTTCSC
T ss_pred             CCCEEEEEecCCCceEeecccCC--CCceEEEECCCCCEEEEECC------CCcEEEEcCCCCc
Confidence            67799999998765433221111  11222333 36788887632      2346666876654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.96  E-value=0.098  Score=45.43  Aligned_cols=198  Identities=9%  Similarity=-0.068  Sum_probs=98.6

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec----CcceEecCCcCceeecCCCCcCccCceEEEEEcCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT----PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDR  152 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g----g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~  152 (392)
                      ..+..||+. ++...............++.. +|.+|+..    +++++|+.  ++........... ....... +.  
T Consensus        78 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~-~~~~i~~-~~--  150 (299)
T 2z2n_A           78 NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREYELPNKGS-YPSFITL-GS--  150 (299)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSSTTC-CEEEEEE-CT--
T ss_pred             CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEecCCCCCC-CCceEEE-cC--
Confidence            357788876 444333211111222344444 67888864    25788883  3433321111111 1111222 22  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVF  230 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~  230 (392)
                                  ++++|+....           ...+.+||+ +++..... .+.....      .....+  +|.+|+.
T Consensus       151 ------------~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~-~~~~~~~------~~~i~~~~~g~l~v~  199 (299)
T 2z2n_A          151 ------------DNALWFTENQ-----------NNAIGRITE-SGDITEFK-IPTPASG------PVGITKGNDDALWFV  199 (299)
T ss_dssp             ------------TSCEEEEETT-----------TTEEEEECT-TCCEEEEE-CSSTTCC------EEEEEECTTSSEEEE
T ss_pred             ------------CCCEEEEeCC-----------CCEEEEEcC-CCcEEEee-CCCCCCc------ceeEEECCCCCEEEE
Confidence                        5688886421           125888888 77666531 1111011      223333  5789888


Q ss_pred             eecccEEEEEECCCCceeecccCCCCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHh
Q 016239          231 GIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYS  309 (392)
Q Consensus       231 gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~  309 (392)
                      ....+.|..||+ +++...+..... ......++. -+|+||+....      ...|+++|+. .+...+. ++...   
T Consensus       200 ~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~~-g~~~~~~-~~~~~---  266 (299)
T 2z2n_A          200 EIIGNKIGRITT-SGEITEFKIPTP-NARPHAITAGAGIDLWFTEWG------ANKIGRLTSN-NIIEEYP-IQIKS---  266 (299)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETT------TTEEEEEETT-TEEEEEE-CSSSS---
T ss_pred             ccCCceEEEECC-CCcEEEEECCCC-CCCceeEEECCCCCEEEeccC------CceEEEECCC-CceEEEe-CCCCC---
Confidence            766678999999 777665432211 111222333 36788886521      2356677874 3333332 12110   


Q ss_pred             hcCCcccCccceeEEEEeCCEEEEEe
Q 016239          310 LVDTEEDDKFASLKCVGLGNLIYVFN  335 (392)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~i~v~g  335 (392)
                               ....+++..++.||+..
T Consensus       267 ---------~~~~~i~~~~g~l~v~~  283 (299)
T 2z2n_A          267 ---------AEPHGICFDGETIWFAM  283 (299)
T ss_dssp             ---------CCEEEEEECSSCEEEEE
T ss_pred             ---------CccceEEecCCCEEEEe
Confidence                     11333334778888876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.96  E-value=0.12  Score=46.37  Aligned_cols=134  Identities=14%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcc-eEEee-cceEEeecC----cceEecCCcCceeecCCCCcCccCceEEEEEcCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGS-CFIGA-NGFFFTTTP----RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHD  151 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~  151 (392)
                      ..+..||..++++..+..+....... +++.. ++..++.++    +.+||.. ++++.....+.........+.+ .. 
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~-~~-  106 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTLVILRINRAARCVRW-AP-  106 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEEECCCCSSCEEEEEE-CT-
T ss_pred             CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC-CCeeeeeEEeecCCCceeEEEE-CC-
Confidence            46788888887654443333222222 23332 454444433    3678876 5665433222211111112222 11 


Q ss_pred             CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC-eecCCCCCCCCCCCCCccceeeEEE--CCEEE
Q 016239          152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS-WELCPPLPADFRSGYSSQYLSSALF--RGRFY  228 (392)
Q Consensus       152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly  228 (392)
                                   +++.++.|+.+           ..+.+||..+.. |........+....     ...+.+  ++.++
T Consensus       107 -------------~~~~l~~~~~d-----------~~v~i~d~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l  157 (372)
T 1k8k_C          107 -------------NEKKFAVGSGS-----------RVISICYFEQENDWWVCKHIKKPIRST-----VLSLDWHPNSVLL  157 (372)
T ss_dssp             -------------TSSEEEEEETT-----------SSEEEEEEETTTTEEEEEEECTTCCSC-----EEEEEECTTSSEE
T ss_pred             -------------CCCEEEEEeCC-----------CEEEEEEecCCCcceeeeeeecccCCC-----eeEEEEcCCCCEE
Confidence                         45566666541           135666655443 32222111110111     222333  57788


Q ss_pred             EEeecccEEEEEECC
Q 016239          229 VFGIYSFSVSSFDLK  243 (392)
Q Consensus       229 ~~gg~~~~i~~yd~~  243 (392)
                      +.|+..+.|..||..
T Consensus       158 ~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAY  172 (372)
T ss_dssp             EEEETTSCEEEEECC
T ss_pred             EEEcCCCCEEEEEcc
Confidence            888888899999964

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.85  E-value=0.23  Score=44.21  Aligned_cols=195  Identities=9%  Similarity=-0.040  Sum_probs=89.7

Q ss_pred             CCCEEEEEcccCCC-CCCCceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC----cceEecCCcCcee-ec
Q 016239           61 PRPWFFLFGLHNTS-SRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP----RFGFSRILNTSWH-LT  132 (392)
Q Consensus        61 ~~~~l~~~gg~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg----~~~ynp~~~~~W~-~~  132 (392)
                      .+..+|+....... .....++.+|+.+.+....-+...  ....++..  ++.+|+.+.    +.++|+. +++-. .+
T Consensus        51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~  127 (353)
T 3vgz_A           51 QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTVNSAVTAIDAK-TGEVKGRL  127 (353)
T ss_dssp             TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETTTTEEEEEETT-TCCEEEEE
T ss_pred             CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecCCCEEEEEeCC-CCeeEEEE
Confidence            34566665432110 113568899998776433211111  11223333  445777754    4788987 45432 22


Q ss_pred             CCCCcCc-------cCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC
Q 016239          133 SPLRFSR-------INPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL  205 (392)
Q Consensus       133 ~~~~~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  205 (392)
                      +.-...+       ....++..  +             ++..+|+.+..          ....+.++|..+.+-...-+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s--~-------------dg~~l~~~~~~----------~~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          128 VLDDRKRTEEVRPLQPRELVAD--D-------------ATNTVYISGIG----------KESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             ESCCCCCCSSCCCCEEEEEEEE--T-------------TTTEEEEEEES----------SSCEEEEEETTTTEEEEEECC
T ss_pred             ecCCCccccccCCCCCceEEEC--C-------------CCCEEEEEecC----------CCceEEEEcCCCCceEEEecC
Confidence            1110000       01112222  1             15567776522          123688999876543221111


Q ss_pred             CCCCCCCCCccceeeEEE-CC-EEEEEeecccEEEEEECCCCceeecccCCC--CcccceeEE-eeCC-eEEEEEeecCC
Q 016239          206 PADFRSGYSSQYLSSALF-RG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLRP--PGVMFSFLI-ASPN-MLVLAGMCNAP  279 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~--~~~~~~~~~-~~~g-~l~v~gg~~~~  279 (392)
                      ... ..      ...+.. +| .+|+.. ..+.|..||+.+.+-........  .......++ ..+| .||+....   
T Consensus       183 ~~~-~~------~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---  251 (353)
T 3vgz_A          183 TGK-MS------TGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK---  251 (353)
T ss_dssp             CCT-TC------CCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS---
T ss_pred             CCC-cc------ceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC---
Confidence            111 11      222332 44 455554 46789999998875443222211  111111222 2244 46665421   


Q ss_pred             CCCceeEEEeecCccceE
Q 016239          280 RGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       280 ~~~~~~v~~~d~~~~~W~  297 (392)
                         ...|+.+|..+.+..
T Consensus       252 ---~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          252 ---AAEVLVVDTRNGNIL  266 (353)
T ss_dssp             ---SSEEEEEETTTCCEE
T ss_pred             ---CCEEEEEECCCCcEE
Confidence               235566688766543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.74  E-value=0.11  Score=47.38  Aligned_cols=181  Identities=12%  Similarity=0.046  Sum_probs=88.9

Q ss_pred             EEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cc-eEEeecC----cceEecCCcCceeecCCCCc
Q 016239           64 WFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NG-FFFTTTP----RFGFSRILNTSWHLTSPLRF  137 (392)
Q Consensus        64 ~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g-~i~v~gg----~~~ynp~~~~~W~~~~~~~~  137 (392)
                      .+++.++.+     ..+..+|..+++....-  .......+++.. +| .||+.++    +.+||.. +++....-....
T Consensus         3 ~l~vs~~~d-----~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSES-----DNISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTT-----TEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEECSS
T ss_pred             EEEEEcCCC-----CEEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCCCeEEEEECC-CCeEEEEEECCC
Confidence            456655533     45788898877643321  111112233333 44 5666653    3788887 554432211111


Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccc
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQY  217 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~  217 (392)
                         ......+              ..++..+++.+..           ...+.+||..+++-...-.....        .
T Consensus        75 ---~v~~~~~--------------spdg~~l~~~~~~-----------~~~v~v~d~~~~~~~~~~~~~~~--------~  118 (391)
T 1l0q_A           75 ---SPQGVAV--------------SPDGKQVYVTNMA-----------SSTLSVIDTTSNTVAGTVKTGKS--------P  118 (391)
T ss_dssp             ---SEEEEEE--------------CTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECSSS--------E
T ss_pred             ---CccceEE--------------CCCCCEEEEEECC-----------CCEEEEEECCCCeEEEEEeCCCC--------c
Confidence               1112222              1114456666532           12688999887754332211111        1


Q ss_pred             eeeEEE-CC-EEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCC-eEEEEEeecCCCCCceeEEEeecCcc
Q 016239          218 LSSALF-RG-RFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPN-MLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       218 ~~~~~~-~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g-~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ...+.. ++ .+|+.++..+.|..||+.+.+....-.... .. .......++ .|++.+..+.    .+.+|  |..+.
T Consensus       119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~-~~~~~~~dg~~l~~~~~~~~----~v~~~--d~~~~  190 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SP-KGIAVTPDGTKVYVANFDSM----SISVI--DTVTN  190 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SE-EEEEECTTSSEEEEEETTTT----EEEEE--ETTTT
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-Cc-ceEEECCCCCEEEEEeCCCC----EEEEE--ECCCC
Confidence            222222 34 577888778899999998876544322211 11 111122245 4556553221    45555  77665


Q ss_pred             ce
Q 016239          295 EF  296 (392)
Q Consensus       295 ~W  296 (392)
                      +.
T Consensus       191 ~~  192 (391)
T 1l0q_A          191 SV  192 (391)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.72  E-value=0.11  Score=45.15  Aligned_cols=145  Identities=8%  Similarity=-0.082  Sum_probs=85.3

Q ss_pred             CEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecC----cceEecCCcCceeecCCCCcC
Q 016239           63 PWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP----RFGFSRILNTSWHLTSPLRFS  138 (392)
Q Consensus        63 ~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~~  138 (392)
                      +.+|+..|..+.   +.+..+|+.+++-..--+++......+++..++.||+...    +++||+. +.+-  +...+.+
T Consensus        32 g~Lyvstg~~~~---s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~-t~~v--~~~i~~g  105 (266)
T 2iwa_A           32 DTLFESTGLYGR---SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRR-TLSN--IKNFTHQ  105 (266)
T ss_dssp             TEEEEEECSTTT---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETT-TTEE--EEEEECC
T ss_pred             CeEEEECCCCCC---CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECC-CCcE--EEEEECC
Confidence            688887653222   6789999998875443223322233356667889999863    4899987 4432  2222222


Q ss_pred             -ccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCee-cCC--CCCCCCCCCCC
Q 016239          139 -RINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWE-LCP--PLPADFRSGYS  214 (392)
Q Consensus       139 -r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~-~~~--~~~~~~~~~~~  214 (392)
                       ....+++.-                 +.++|+.-|.            ..+.+.|+.+.+=. .+.  .-+.+...   
T Consensus       106 ~~~g~glt~D-----------------g~~l~vs~gs------------~~l~viD~~t~~v~~~I~Vg~~~~p~~~---  153 (266)
T 2iwa_A          106 MKDGWGLATD-----------------GKILYGSDGT------------SILYEIDPHTFKLIKKHNVKYNGHRVIR---  153 (266)
T ss_dssp             SSSCCEEEEC-----------------SSSEEEECSS------------SEEEEECTTTCCEEEEEECEETTEECCC---
T ss_pred             CCCeEEEEEC-----------------CCEEEEECCC------------CeEEEEECCCCcEEEEEEECCCCccccc---
Confidence             112222222                 6788887542            27889998875422 221  11111111   


Q ss_pred             ccceeeEEECCEEEEEeecccEEEEEECCCCce
Q 016239          215 SQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVW  247 (392)
Q Consensus       215 ~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W  247 (392)
                        .......+|++|+-...++.|.+.|+.+.+-
T Consensus       154 --~nele~~dg~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          154 --LNELEYINGEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             --EEEEEEETTEEEEEETTSSEEEEEETTTCCE
T ss_pred             --ceeEEEECCEEEEecCCCCeEEEEECCCCcE
Confidence              1234455899998877778999999988753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.64  E-value=0.059  Score=49.12  Aligned_cols=144  Identities=15%  Similarity=0.095  Sum_probs=75.3

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC----cceEecCCcCceeecCC
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP----RFGFSRILNTSWHLTSP  134 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg----~~~ynp~~~~~W~~~~~  134 (392)
                      .+..+++.++.+     ..+..+|..+++....-....  .-..++..  +..|++.+.    +.+||.. +++....-.
T Consensus        42 dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~~  113 (391)
T 1l0q_A           42 DGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVK  113 (391)
T ss_dssp             TSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEE
T ss_pred             CCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEEEe
Confidence            344566655433     467889988776543222111  22233333  445666653    3788987 554332211


Q ss_pred             CCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCC
Q 016239          135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYS  214 (392)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~  214 (392)
                        ... ......+              ..++..+|+.++.           ...+.+||..+++....-.....      
T Consensus       114 --~~~-~~~~~~~--------------s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~------  159 (391)
T 1l0q_A          114 --TGK-SPLGLAL--------------SPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVSVGRS------  159 (391)
T ss_dssp             --CSS-SEEEEEE--------------CTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECCSS------
T ss_pred             --CCC-CcceEEE--------------CCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEecCCC------
Confidence              111 1112222              1114457677653           12688999887765433221111      


Q ss_pred             ccceeeEEE--CC-EEEEEeecccEEEEEECCCCceee
Q 016239          215 SQYLSSALF--RG-RFYVFGIYSFSVSSFDLKKHVWSE  249 (392)
Q Consensus       215 ~~~~~~~~~--~g-~ly~~gg~~~~i~~yd~~~~~W~~  249 (392)
                         ...+.+  ++ .+|+.++..+.|..||+.+++...
T Consensus       160 ---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          160 ---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (391)
T ss_dssp             ---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence               222222  34 677777777899999998876443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.60  E-value=0.063  Score=49.72  Aligned_cols=180  Identities=11%  Similarity=-0.072  Sum_probs=89.0

Q ss_pred             ceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeecC----cceEecCCcCceeecCCCCc--CccCc-eEEEEEcC
Q 016239           79 QSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTTP----RFGFSRILNTSWHLTSPLRF--SRINP-LVGVFYDH  150 (392)
Q Consensus        79 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~--~r~~~-~~~~~~~~  150 (392)
                      .++.+|+.+..+..+..++.+....+++.. ++.+++.++    +.+||+. +++.....+...  ..... ..+.+ ..
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~-~~  179 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISI-PE  179 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEE-GG
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEE-cC
Confidence            577788876655544333322222233333 777777753    4788987 565543322211  11111 11222 11


Q ss_pred             CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEE
Q 016239          151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFY  228 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly  228 (392)
                                    ++++++.++.           ...+.+||..+++-...-....  ..     ....+..  +..+|
T Consensus       180 --------------~~~~~~s~~~-----------d~~v~~~d~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~  227 (433)
T 3bws_A          180 --------------HNELWVSQMQ-----------ANAVHVFDLKTLAYKATVDLTG--KW-----SKILLYDPIRDLVY  227 (433)
T ss_dssp             --------------GTEEEEEEGG-----------GTEEEEEETTTCCEEEEEECSS--SS-----EEEEEEETTTTEEE
T ss_pred             --------------CCEEEEEECC-----------CCEEEEEECCCceEEEEEcCCC--CC-----eeEEEEcCCCCEEE
Confidence                          6788887764           1268899987754322111111  11     1223333  34577


Q ss_pred             EEeecccEEEEEECCCCceeecccCCCCcccceeEE-eeCCeEEEEEeecCCCC--CceeEEEeecCccc
Q 016239          229 VFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRG--PSFNLWKVDELSME  295 (392)
Q Consensus       229 ~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~--~~~~v~~~d~~~~~  295 (392)
                      +.+...+.|..||+.+.+....-.  .... ...+. ..+++.+++++......  ....|+.+|..+.+
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~--~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~  294 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTD--KIGL-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK  294 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECC--CCSE-EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred             EEecCCCcEEEEECCCCcEEEEec--CCCC-ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence            777677899999998876533322  1111 22222 23565555544322211  12345555876654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.094  Score=47.22  Aligned_cols=65  Identities=12%  Similarity=0.103  Sum_probs=38.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCc--eeecccCCCCcccceeEE-eeC---CeEEEEEeecCCCCCceeEEEeecC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV--WSEVQTLRPPGVMFSFLI-ASP---NMLVLAGMCNAPRGPSFNLWKVDEL  292 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~~~~~~~~~~~~-~~~---g~l~v~gg~~~~~~~~~~v~~~d~~  292 (392)
                      ++.+++.|+..+.|..||..+..  +..+............+. ..+   +++++.++.++    .+.+|.++..
T Consensus       171 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg----~i~iwd~~~~  241 (379)
T 3jrp_A          171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR----TCIIWTQDNE  241 (379)
T ss_dssp             TTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS----CEEEEEESST
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC----EEEEEeCCCC
Confidence            47888888888899999986543  444433332121222222 224   67777776543    6888855443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.60  E-value=0.26  Score=44.36  Aligned_cols=115  Identities=13%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             CC-EEEEEeecccEEEEEECCCCceeecccC---CCCcccceeEE-eeCCe-EEEEEeecCCCCCceeEEEeecCccceE
Q 016239          224 RG-RFYVFGIYSFSVSSFDLKKHVWSEVQTL---RPPGVMFSFLI-ASPNM-LVLAGMCNAPRGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       224 ~g-~ly~~gg~~~~i~~yd~~~~~W~~i~~~---~~~~~~~~~~~-~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~~~W~  297 (392)
                      +| .+|+.+...+.|..||..++++..+...   +........++ .-+|+ ||+....   ....+.+|.+|..+.+++
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~---~~~~i~v~~~~~~~g~~~  297 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL---KADGVAIFKVDETNGTLT  297 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS---SSCEEEEEEECTTTCCEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC---CCCEEEEEEEcCCCCcEE
Confidence            45 4777765678899999988776554332   21111112222 33666 4554422   012688888877777777


Q ss_pred             ecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          298 EIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       298 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      .+..++....           -..+++...|..||+.+.   ....+.++++|+++++
T Consensus       298 ~~~~~~~g~~-----------~~~~~~spdg~~l~~~~~---~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          298 KVGYQLTGIH-----------PRNFIITPNGKYLLVACR---DTNVIQIFERDQATGL  341 (361)
T ss_dssp             EEEEEECSSC-----------CCEEEECTTSCEEEEEET---TTTEEEEEEECTTTCC
T ss_pred             EeeEecCCCC-----------CceEEECCCCCEEEEEEC---CCCCEEEEEEECCCCc
Confidence            6665443100           012222223445666653   2355667777888887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.51  E-value=0.16  Score=43.99  Aligned_cols=185  Identities=8%  Similarity=-0.009  Sum_probs=91.5

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeecC----cceEecCCcCceeecCCC
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTTP----RFGFSRILNTSWHLTSPL  135 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~gg----~~~ynp~~~~~W~~~~~~  135 (392)
                      .++.+|+.....    ...+..||+.......+..... .....++.. +|.+|+...    +.+||+. .+....+...
T Consensus        87 ~~g~l~v~~~~~----~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~  160 (286)
T 1q7f_A           87 NSGDIIVTERSP----THQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS  160 (286)
T ss_dssp             TTTEEEEEECGG----GCEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT
T ss_pred             CCCeEEEEcCCC----CCEEEEECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC
Confidence            455666654211    1457788855443333322111 112244443 677888742    4788876 4433333211


Q ss_pred             CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCc
Q 016239          136 RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSS  215 (392)
Q Consensus       136 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  215 (392)
                      ... .......+ +.              ++++|+....           ...+.+||+....-..+..-. ....    
T Consensus       161 ~~~-~~p~~i~~-~~--------------~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~g-~~~~----  208 (286)
T 1q7f_A          161 KHL-EFPNGVVV-ND--------------KQEIFISDNR-----------AHCVKVFNYEGQYLRQIGGEG-ITNY----  208 (286)
T ss_dssp             TTC-SSEEEEEE-CS--------------SSEEEEEEGG-----------GTEEEEEETTCCEEEEESCTT-TSCS----
T ss_pred             Ccc-CCcEEEEE-CC--------------CCCEEEEECC-----------CCEEEEEcCCCCEEEEEccCC-ccCC----
Confidence            111 11112222 22              5788887542           226888988654333332210 0011    


Q ss_pred             cceeeEEE--CCEEEEEeeccc-EEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEee
Q 016239          216 QYLSSALF--RGRFYVFGIYSF-SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       216 ~~~~~~~~--~g~ly~~gg~~~-~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                        ...+.+  +|.+|+.....+ .|..||+..+.-..+........-....+.-+|+||+... +    ..+.+|.++
T Consensus       209 --p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~-~----~~v~v~~~~  279 (286)
T 1q7f_A          209 --PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK-D----YRLYIYRYV  279 (286)
T ss_dssp             --EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-T----TEEEEEECS
T ss_pred             --CcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC-C----CeEEEEEcc
Confidence              233333  678999887665 8999998655444443322111111222334789888742 1    267888653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.50  E-value=0.36  Score=41.74  Aligned_cols=176  Identities=9%  Similarity=-0.058  Sum_probs=90.1

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEe-ecceEEeec----CcceEecCCcCceeecCCCCcCccCceEEEEEcCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIG-ANGFFFTTT----PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDR  152 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~g~i~v~g----g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~  152 (392)
                      ..+..||+. +...............+++. .+|.+|+..    +++++|+.  ++.+... ++........... +.  
T Consensus        36 ~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~-~~~~~~~~~~i~~-~~--  108 (299)
T 2z2n_A           36 NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKEYT-LPNPDSAPYGITE-GP--  108 (299)
T ss_dssp             TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEE-CSSTTCCEEEEEE-CT--
T ss_pred             CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEEEe-CCCcCCCceeeEE-CC--
Confidence            457889988 66654432211122234444 377788764    25788875  3443332 1111111112222 22  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEe
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFG  231 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~g  231 (392)
                                  ++++|+....           ...+.++|+ +++...... +.....     ....+.. +|.+|+..
T Consensus       109 ------------~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~-~~~~~~-----~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A          109 ------------NGDIWFTEMN-----------GNRIGRITD-DGKIREYEL-PNKGSY-----PSFITLGSDNALWFTE  158 (299)
T ss_dssp             ------------TSCEEEEETT-----------TTEEEEECT-TCCEEEEEC-SSTTCC-----EEEEEECTTSCEEEEE
T ss_pred             ------------CCCEEEEecC-----------CceEEEECC-CCCEEEecC-CCCCCC-----CceEEEcCCCCEEEEe
Confidence                        5688887432           125788888 555544321 111011     1222332 57898876


Q ss_pred             ecccEEEEEECCCCceeecccCCCCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239          232 IYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       232 g~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      ...+.|..||+ +++...+..... ......++. .+|+||+....      ...|+++|+ +.+...+
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~  218 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEF  218 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEE
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEE
Confidence            55678999999 777665422211 111222333 36888886531      235677788 5555543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.51  Score=44.01  Aligned_cols=157  Identities=9%  Similarity=-0.061  Sum_probs=83.5

Q ss_pred             CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC
Q 016239          166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH  245 (392)
Q Consensus       166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~  245 (392)
                      +++++.|+.+           ..+.+||..++.-...-....  ...    ..+.+..++.+++.|+.++.|..||..+.
T Consensus       210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~h--~~~----v~~~~~sd~~~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFGH--KHF----VSSICCGKDYLLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             CEEEEEEETT-----------SCEEEEEESCTTCEEEECCCC--SSC----EEEEEECSTTEEEEEESSSEEEEEETTTC
T ss_pred             CcEEEEEcCC-----------CcEEEEECCCCceeeeeecCC--CCc----eEEEEECCCCEEEEEeCCCeEEEEECCCC
Confidence            6777777651           258888877654321100001  110    01222227888888888899999999887


Q ss_pred             ceeecccC-------------C----------CCcccceeEE-eeCCeEEEEEeecCCCCCceeEEEe-ecCccceEecc
Q 016239          246 VWSEVQTL-------------R----------PPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKV-DELSMEFSEIA  300 (392)
Q Consensus       246 ~W~~i~~~-------------~----------~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~-d~~~~~W~~~~  300 (392)
                      +....-..             +          ........+. ..++++++++....   ..+.+|.+ +.....++.+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d---~~i~iw~~~~~~~~~l~~~~  349 (450)
T 2vdu_B          273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT---KCIIILEMSEKQKGDLALKQ  349 (450)
T ss_dssp             CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC---SEEEEEEECSSSTTCEEEEE
T ss_pred             cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC---CeEEEEEeccCCCCceeecc
Confidence            53322110             0          0001111222 22566665554221   16888866 44445566555


Q ss_pred             cCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecccc----CCCCeEEEEeecCCCc
Q 016239          301 IMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYH----KKYPACVCEIGTESDK  355 (392)
Q Consensus       301 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~----~~~~~~~~~~d~~~~~  355 (392)
                      .++...             ....+....+.+++..+..+    ....+.++.++.++++
T Consensus       350 ~~~~~~-------------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~  395 (450)
T 2vdu_B          350 IITFPY-------------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS  395 (450)
T ss_dssp             EEECSS-------------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred             EeccCC-------------ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence            543221             14566667788888765432    1344677777877777

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.43  E-value=0.58  Score=43.42  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeC
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASP  267 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~  267 (392)
                      .+.+||..+++-...  +... ...     ......++.+++.|+.++.|..||+.+.+-...-..+.........+..+
T Consensus       300 ~i~i~d~~~~~~~~~--~~~~-~~~-----v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  371 (445)
T 2ovr_B          300 SIRVWDVETGNCIHT--LTGH-QSL-----TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  371 (445)
T ss_dssp             CEEEEETTTCCEEEE--ECCC-CSC-----EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             eEEEEECCCCCEEEE--EcCC-ccc-----EEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC
Confidence            588888876542211  1111 111     34445567778888888999999997764322211111111112223446


Q ss_pred             CeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          268 NMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       268 g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +.+++.|+.++    .+.+|  |..+.+
T Consensus       372 ~~~l~s~~~dg----~v~iw--d~~~~~  393 (445)
T 2ovr_B          372 KNFVITSSDDG----TVKLW--DLKTGE  393 (445)
T ss_dssp             SSEEEEEETTS----EEEEE--ETTTCC
T ss_pred             CCEEEEEeCCC----eEEEE--ECCCCc
Confidence            77777776443    67888  655544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.40  E-value=0.44  Score=41.70  Aligned_cols=221  Identities=13%  Similarity=0.048  Sum_probs=107.2

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec--CcceEecCCcCceeecCCCCcC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT--PRFGFSRILNTSWHLTSPLRFS  138 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g--g~~~ynp~~~~~W~~~~~~~~~  138 (392)
                      .+.+|+....     ...++.||+.++.........   .-.+++.. +|.+++..  ++++||+. +++.+.+......
T Consensus        24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~dG~l~v~~~~~l~~~d~~-~g~~~~~~~~~~~   94 (297)
T 3g4e_A           24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTMDA---PVSSVALRQSGGYVATIGTKFCALNWK-EQSAVVLATVDND   94 (297)
T ss_dssp             TTEEEEEETT-----TTEEEEEETTTCCEEEEECSS---CEEEEEEBTTSSEEEEETTEEEEEETT-TTEEEEEEECCTT
T ss_pred             CCEEEEEECC-----CCEEEEEECCCCcEEEEeCCC---ceEEEEECCCCCEEEEECCeEEEEECC-CCcEEEEEecCCC
Confidence            3455555332     256889999887654332211   11233333 56666553  35889998 6777665443221


Q ss_pred             --ccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCcc
Q 016239          139 --RINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQ  216 (392)
Q Consensus       139 --r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~  216 (392)
                        .....-..+ +.              ++++|+..-...............++.+|+. ++-..+..   ....     
T Consensus        95 ~~~~~~~di~~-d~--------------dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~---~~~~-----  150 (297)
T 3g4e_A           95 KKNNRFNDGKV-DP--------------AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD---QVDI-----  150 (297)
T ss_dssp             CSSEEEEEEEE-CT--------------TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE---EESB-----
T ss_pred             CCCCCCCCEEE-CC--------------CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee---cccc-----
Confidence              111111222 22              5677764311000000000123467888874 33332211   0011     


Q ss_pred             ceeeEEE--CC-EEEEEeecccEEEEEEC--CCCceee---cccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEE
Q 016239          217 YLSSALF--RG-RFYVFGIYSFSVSSFDL--KKHVWSE---VQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       217 ~~~~~~~--~g-~ly~~gg~~~~i~~yd~--~~~~W~~---i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                       .....+  ++ .||+.....+.|++||.  .+.+...   +............++ ..+|+||+....      ...|+
T Consensus       151 -pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~------~~~v~  223 (297)
T 3g4e_A          151 -SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN------GGRVI  223 (297)
T ss_dssp             -EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET------TTEEE
T ss_pred             -ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC------CCEEE
Confidence             223333  34 68998877789999986  4544321   111111011112233 347899987642      23477


Q ss_pred             EeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEe---CCEEEEEec
Q 016239          288 KVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL---GNLIYVFNE  336 (392)
Q Consensus       288 ~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~gg  336 (392)
                      +||+++.+....-.+|..              ...+++..   +++|||...
T Consensus       224 ~~d~~tG~~~~~i~~p~~--------------~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          224 RLDPVTGKRLQTVKLPVD--------------KTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECTTTCCEEEEEECSSS--------------BEEEEEEESGGGCEEEEEEB
T ss_pred             EEcCCCceEEEEEECCCC--------------CceEEEEeCCCCCEEEEEcC
Confidence            789986655444444532              12333333   358999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.40  E-value=0.32  Score=42.07  Aligned_cols=187  Identities=9%  Similarity=-0.050  Sum_probs=94.6

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeecC----cceEecCCcCceeecCCC
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTTP----RFGFSRILNTSWHLTSPL  135 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~gg----~~~ynp~~~~~W~~~~~~  135 (392)
                      .++.+++....     ...+..||+. ++..............+++.. +|.+|+...    +.+||+.  ++...... 
T Consensus        29 ~~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~~~~~~-   99 (300)
T 2qc5_A           29 EDGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGFTEYPL-   99 (300)
T ss_dssp             TTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEC-
T ss_pred             CCCCEEEEcCC-----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCeEEecC-
Confidence            34556665321     1457889988 665543221111122344443 677888642    5788876  34443221 


Q ss_pred             CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCc
Q 016239          136 RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSS  215 (392)
Q Consensus       136 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  215 (392)
                      +..........+ +.              ++++|+....           ...+..||+. ++..... ++.....    
T Consensus       100 ~~~~~~~~~i~~-~~--------------~g~l~v~~~~-----------~~~i~~~~~~-g~~~~~~-~~~~~~~----  147 (300)
T 2qc5_A          100 PQPDSGPYGITE-GL--------------NGDIWFTQLN-----------GDRIGKLTAD-GTIYEYD-LPNKGSY----  147 (300)
T ss_dssp             SSTTCCEEEEEE-CS--------------TTCEEEEETT-----------TTEEEEECTT-SCEEEEE-CSSTTCC----
T ss_pred             CCCCCCCccceE-CC--------------CCCEEEEccC-----------CCeEEEECCC-CCEEEcc-CCCCCCC----
Confidence            111111222222 22              6778887532           1257888886 5554332 1211011    


Q ss_pred             cceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecC
Q 016239          216 QYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDEL  292 (392)
Q Consensus       216 ~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~  292 (392)
                        ......  +|.+|+.....+.|..||+ +++...+..... ......++. .+|.||+....      ...|+++|+ 
T Consensus       148 --~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-  216 (300)
T 2qc5_A          148 --PAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN-AAAPVGITSGNDGALWFVEIM------GNKIGRITT-  216 (300)
T ss_dssp             --EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETT------TTEEEEECT-
T ss_pred             --ceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC-CCCcceEEECCCCCEEEEccC------CCEEEEEcC-
Confidence              223333  5788887765678999999 666665432211 111222333 37888886531      235677787 


Q ss_pred             ccceEec
Q 016239          293 SMEFSEI  299 (392)
Q Consensus       293 ~~~W~~~  299 (392)
                      +.+....
T Consensus       217 ~g~~~~~  223 (300)
T 2qc5_A          217 TGEISEY  223 (300)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEE
Confidence            4455543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.38  E-value=0.36  Score=42.42  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=49.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA  265 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~  265 (392)
                      .+.+||..+.+-...-..+..         ...+.+  ++.++++|+..+.|..||..+.+-..+...  ..........
T Consensus       206 ~i~~~d~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~v~~~~~~  274 (337)
T 1gxr_A          206 TVRSWDLREGRQLQQHDFTSQ---------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH--ESCVLSLKFA  274 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSC---------EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC--SSCEEEEEEC
T ss_pred             cEEEEECCCCceEeeecCCCc---------eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC--ccceeEEEEC
Confidence            588888876543222111111         222222  677888888888999999987753333211  1111122223


Q ss_pred             eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          266 SPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       266 ~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      .++++++.++.++    .+.+|  |..+.+
T Consensus       275 ~~~~~l~~~~~dg----~i~~~--~~~~~~  298 (337)
T 1gxr_A          275 YCGKWFVSTGKDN----LLNAW--RTPYGA  298 (337)
T ss_dssp             TTSSEEEEEETTS----EEEEE--ETTTCC
T ss_pred             CCCCEEEEecCCC----cEEEE--ECCCCe
Confidence            3677777776432    57777  554443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.32  Score=43.63  Aligned_cols=116  Identities=9%  Similarity=0.135  Sum_probs=64.9

Q ss_pred             CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--C--CEEEEEeecccEEEEEE
Q 016239          166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--R--GRFYVFGIYSFSVSSFD  241 (392)
Q Consensus       166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~--g~ly~~gg~~~~i~~yd  241 (392)
                      +.+++.|+.+           ..+.+||..++.|..+..+... ...     ...+.+  +  +.+++.++..+.|..||
T Consensus        69 ~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~~~-~~~-----v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           69 GTILASCSYD-----------GKVLIWKEENGRWSQIAVHAVH-SAS-----VNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             CSEEEEEETT-----------SCEEEEEEETTEEEEEEEECCC-SSC-----EEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEeccC-----------CEEEEEEcCCCceeEeeeecCC-Ccc-----eEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            5677776641           2588888888887666543322 111     233333  3  67888888889999999


Q ss_pred             CCCCceeecccCCCCcccceeEEee--------------CCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFLIAS--------------PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~~~~--------------~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      +.+..-...............+...              ++.+++.|+.+.    .+.+|.+......+..+..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~  202 (379)
T 3jrp_A          132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTL  202 (379)
T ss_dssp             CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS----CEEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC----eEEEEEecCCCcceeeEEEE
Confidence            9876322211111111111112222              477777776543    68888665555556555443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.32  E-value=0.096  Score=47.41  Aligned_cols=148  Identities=14%  Similarity=0.104  Sum_probs=68.8

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcc-eEEee-cceEEeecC----cceEecCCcCc-eeecCC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS-CFIGA-NGFFFTTTP----RFGFSRILNTS-WHLTSP  134 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~g~i~v~gg----~~~ynp~~~~~-W~~~~~  134 (392)
                      ++.+++.++.+     ..+.+||..++.|..+..+....... +++.. ++..++.++    +.+||.. +++ |.....
T Consensus        22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~-~~~~~~~~~~   95 (377)
T 3dwl_C           22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR-PDGTWKQTLV   95 (377)
T ss_dssp             SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEE
T ss_pred             CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC-CCCceeeeeE
Confidence            34455555433     35677888887776666555433322 23322 455455443    3677876 444 433222


Q ss_pred             CCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCC-eecCCCCCCCCCCCC
Q 016239          135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS-WELCPPLPADFRSGY  213 (392)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~  213 (392)
                      +...... ...+.             |.. +++.++.|+.+           ..+.+||..++. |.....+..+.... 
T Consensus        96 ~~~~~~~-v~~~~-------------~~~-~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~h~~~-  148 (377)
T 3dwl_C           96 LLRLNRA-ATFVR-------------WSP-NEDKFAVGSGA-----------RVISVCYFEQENDWWVSKHLKRPLRST-  148 (377)
T ss_dssp             CCCCSSC-EEEEE-------------CCT-TSSCCEEEESS-----------SCEEECCC-----CCCCEEECSSCCSC-
T ss_pred             ecccCCc-eEEEE-------------ECC-CCCEEEEEecC-----------CeEEEEEECCcccceeeeEeecccCCC-
Confidence            2211111 11111             111 45555665541           157788877664 44443322210111 


Q ss_pred             CccceeeEEE--CCEEEEEeecccEEEEEECCCCc
Q 016239          214 SSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       214 ~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                          ...+.+  ++.+.+.|+.++.|..||..+..
T Consensus       149 ----v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          149 ----ILSLDWHPNNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             ----EEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred             ----eEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence                222333  57788888888899999986443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.30  E-value=0.23  Score=45.62  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=36.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee--CCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++.+++.|+.++.|..||..+.+-...-....  .....+...  +..+++.|+...  ...+.+|  |..+.+
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~--d~~i~i~--d~~~~~  295 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTM--DKQIHFW--NAATGA  295 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTT--TCEEEEE--ETTTCC
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCC--CCEEEEE--ECCCCC
Confidence            67788888888999999998754322211111  111222222  456777664111  1156777  655443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.30  E-value=0.23  Score=50.21  Aligned_cols=180  Identities=11%  Similarity=0.065  Sum_probs=95.2

Q ss_pred             ceeeeeCCCCceeeCCCCCC-CCC-cceEEee-cceEEee---cCcceEecCCcCceeecCCCCcCccCceEEEEEcCCC
Q 016239           79 QSFAFDPASNSWFHLPPAQE-PRA-GSCFIGA-NGFFFTT---TPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDR  152 (392)
Q Consensus        79 ~~~~yd~~~~~W~~~~~~~~-~r~-~~~~~~~-~g~i~v~---gg~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~  152 (392)
                      .+..||+.++++........ +.. -.+++.. +|.|++.   +|.++||+. +++++........ .....+...+.  
T Consensus       384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~~~~~~~~-~~~v~~i~~d~--  459 (781)
T 3v9f_A          384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR-LKKFQIIELEKNE-LLDVRVFYEDK--  459 (781)
T ss_dssp             CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS-SCEEEECCSTTTC-CCCEEEEEECT--
T ss_pred             cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC-CCcEEEeccCCCC-CCeEEEEEECC--
Confidence            35667777665554421111 111 1233333 6777775   467899998 6888766532111 11222222222  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCC-CCCCCCCccceeeEEE--CCEEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPA-DFRSGYSSQYLSSALF--RGRFYV  229 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~--~g~ly~  229 (392)
                                  ++.+++...             ..+.+||+.+++|+....... .....    .......  +|.|++
T Consensus       460 ------------~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~i~~i~~d~~g~lWi  510 (781)
T 3v9f_A          460 ------------NKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNSQLLEN----FVRSIAQDSEGRFWI  510 (781)
T ss_dssp             ------------TSEEEEEET-------------TEEEEEESSSSSCCEEECTTTSSCSCS----CEEEEEECTTCCEEE
T ss_pred             ------------CCCEEEEEC-------------CceEEEeCCCCeEEecccCcccccccc----eeEEEEEcCCCCEEE
Confidence                        567776532             158889999988876543221 00000    1222222  466665


Q ss_pred             EeecccEEEEEECCCCceeecccCCC-CcccceeEEe-eCCeEEEEEeecCCCCCceeE-EEeecCccceEecc
Q 016239          230 FGIYSFSVSSFDLKKHVWSEVQTLRP-PGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNL-WKVDELSMEFSEIA  300 (392)
Q Consensus       230 ~gg~~~~i~~yd~~~~~W~~i~~~~~-~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v-~~~d~~~~~W~~~~  300 (392)
                       |...+-+.+||+.+++++....... .......+.. .+|.|++...        ..+ ++||+.+.+++...
T Consensus       511 -gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~  575 (781)
T 3v9f_A          511 -GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQ  575 (781)
T ss_dssp             -EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEEC
T ss_pred             -EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEcc
Confidence             4443458999999998887654221 1111122333 4788887542        134 78899888877654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.29  E-value=0.23  Score=44.37  Aligned_cols=146  Identities=11%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             EEEEEeCC-CCCeecCCCCCCCCCCCCCccceeeEE-ECCE-EEEEeecccEEEEEECC--CCceeeccc---CCCC---
Q 016239          188 AVEIYDPH-SDSWELCPPLPADFRSGYSSQYLSSAL-FRGR-FYVFGIYSFSVSSFDLK--KHVWSEVQT---LRPP---  256 (392)
Q Consensus       188 ~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~~~~i~~yd~~--~~~W~~i~~---~~~~---  256 (392)
                      .+.+||.. +++...+..........    ....+. -+|+ +|+.+...+.+..||..  ++++..+..   .+..   
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~----p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFG----PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCC----EEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCC----CceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            67888876 45554332111110111    012222 2555 88877666777777655  466554322   2211   


Q ss_pred             cccceeE-EeeCCe-EEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEE
Q 016239          257 GVMFSFL-IASPNM-LVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVF  334 (392)
Q Consensus       257 ~~~~~~~-~~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  334 (392)
                      ......+ +.-+|+ ||+.....    ..+.+|.++.. .+++.+..++...      ..    -...++...|..||+.
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~----~~v~v~~~~~~-g~~~~~~~~~~~~------~~----~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGY----NTLAVFAVTAD-GHLTLIQQISTEG------DF----PRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETT----TEEEEEEECGG-GCEEEEEEEECSS------SC----CCEEEECTTSSEEEEE
T ss_pred             CCcceeEEECCCCCEEEEEeCCC----CEEEEEEECCC-CcEEEeEEEecCC------CC----cCeEEECCCCCEEEEE
Confidence            0111222 333665 66655322    15777765532 2555555444310      00    0122222234457776


Q ss_pred             eccccCCCCeEEEEeecCCCc
Q 016239          335 NEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       335 gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      +.   ....+.++++|+++.+
T Consensus       304 ~~---~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          304 NQ---NTDNATLYARDLTSGK  321 (347)
T ss_dssp             ET---TTTEEEEEEECTTTCC
T ss_pred             Ec---CCCcEEEEEEeCCCCe
Confidence            63   2345666777888877

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.24  E-value=0.24  Score=50.19  Aligned_cols=181  Identities=9%  Similarity=-0.027  Sum_probs=98.9

Q ss_pred             ceeeeeCCCCceeeCCCCCCC-CCcceEEee-cceEEee--cCcceEecCCcCceeecCCCCc-C-ccCceEEEEEcCCC
Q 016239           79 QSFAFDPASNSWFHLPPAQEP-RAGSCFIGA-NGFFFTT--TPRFGFSRILNTSWHLTSPLRF-S-RINPLVGVFYDHDR  152 (392)
Q Consensus        79 ~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~-~g~i~v~--gg~~~ynp~~~~~W~~~~~~~~-~-r~~~~~~~~~~~~~  152 (392)
                      .++.||+.++++........+ ..-.+++.. +|.|++.  +|.++||+. +++|........ . .......+..+.  
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~-~~~~~~~~~~~~~~~~~~~i~~i~~d~--  504 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLA-SKKVIHHYDTSNSQLLENFVRSIAQDS--  504 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESS-SSSCCEEECTTTSSCSCSCEEEEEECT--
T ss_pred             CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCC-CCeEEecccCcccccccceeEEEEEcC--
Confidence            467788888887766432111 111233333 6788776  467899998 677765543221 0 012222233232  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVF  230 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~  230 (392)
                                  ++.|++....            ..+.+||+.+++++..... ......    ....+..  +|.|++.
T Consensus       505 ------------~g~lWigt~~------------~Gl~~~~~~~~~~~~~~~~-~~l~~~----~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          505 ------------EGRFWIGTFG------------GGVGIYTPDMQLVRKFNQY-EGFCSN----TINQIYRSSKGQMWLA  555 (781)
T ss_dssp             ------------TCCEEEEESS------------SCEEEECTTCCEEEEECTT-TTCSCS----CEEEEEECTTSCEEEE
T ss_pred             ------------CCCEEEEEcC------------CCEEEEeCCCCeEEEccCC-CCCCCC----eeEEEEECCCCCEEEE
Confidence                        6677775321            1377889888888766431 111111    1222333  5677665


Q ss_pred             eecccEEEEEECCCCceeecccCC--CCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          231 GIYSFSVSSFDLKKHVWSEVQTLR--PPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       231 gg~~~~i~~yd~~~~~W~~i~~~~--~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      +. .+-+..||+.++++.......  +.......+...+|+|++.+        ...+.+||+.+.+++...
T Consensus       556 T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--------~~Gl~~~~~~~~~~~~~~  618 (781)
T 3v9f_A          556 TG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--------NTGISCYITSKKCFYTYD  618 (781)
T ss_dssp             ET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--------SSCEEEEETTTTEEEEEC
T ss_pred             EC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--------CCceEEEECCCCceEEec
Confidence            43 333399999999887764321  11222222233478888865        224667899888876654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.19  E-value=0.66  Score=41.59  Aligned_cols=23  Identities=9%  Similarity=0.280  Sum_probs=15.7

Q ss_pred             CCE-EEEEeecccEEEEEECCCCc
Q 016239          224 RGR-FYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       224 ~g~-ly~~gg~~~~i~~yd~~~~~  246 (392)
                      +|+ +|+.+...+.|..|+...+.
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCC
Confidence            554 77776556788888776544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.14  E-value=0.57  Score=40.42  Aligned_cols=187  Identities=12%  Similarity=0.034  Sum_probs=91.8

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCC---CC-CCcceEEe--ecceEEeecC-----cceEecCCcCcee
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQ---EP-RAGSCFIG--ANGFFFTTTP-----RFGFSRILNTSWH  130 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~-r~~~~~~~--~~g~i~v~gg-----~~~ynp~~~~~W~  130 (392)
                      .+.+|+....+     ..+..||+.......+....   .. .....++.  .+|.+|+.+.     +.+||+. ...-.
T Consensus        40 ~g~l~v~~~~~-----~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~~~  113 (286)
T 1q7f_A           40 QNDIIVADTNN-----HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVR  113 (286)
T ss_dssp             TCCEEEEEGGG-----TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEE
T ss_pred             CCCEEEEECCC-----CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcEEE
Confidence            44566653322     45788888754433333211   00 11224444  3788888762     3678854 33322


Q ss_pred             ecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCC
Q 016239          131 LTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFR  210 (392)
Q Consensus       131 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~  210 (392)
                      .+.... . .......+ +.              ++++|+....           ...+.+||+........... ....
T Consensus       114 ~~~~~~-~-~~~~~i~~-~~--------------~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~-~~~~  164 (286)
T 1q7f_A          114 KFGATI-L-QHPRGVTV-DN--------------KGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCS-KHLE  164 (286)
T ss_dssp             EECTTT-C-SCEEEEEE-CT--------------TSCEEEEETT-----------TTEEEEECTTSCEEEEEECT-TTCS
T ss_pred             EecCcc-C-CCceEEEE-eC--------------CCCEEEEECC-----------CCEEEEEcCCCCEEEEeCCC-CccC
Confidence            222111 0 11111222 22              5678887532           12588888755433333211 1101


Q ss_pred             CCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEE
Q 016239          211 SGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       211 ~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                      .      ...+.+  +|.+|+.....+.|..||+..+....+..... ......++ ..+|+||+.....     ...|.
T Consensus       165 ~------p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~-----~~~i~  232 (286)
T 1q7f_A          165 F------PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGI-TNYPIGVGINSNGEILIADNHN-----NFNLT  232 (286)
T ss_dssp             S------EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTT-SCSEEEEEECTTCCEEEEECSS-----SCEEE
T ss_pred             C------cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCc-cCCCcEEEECCCCCEEEEeCCC-----CEEEE
Confidence            1      233333  58899987777899999987654444432111 01112233 3478898876421     11455


Q ss_pred             EeecCccc
Q 016239          288 KVDELSME  295 (392)
Q Consensus       288 ~~d~~~~~  295 (392)
                      +||.+...
T Consensus       233 ~~~~~g~~  240 (286)
T 1q7f_A          233 IFTQDGQL  240 (286)
T ss_dssp             EECTTSCE
T ss_pred             EECCCCCE
Confidence            55866543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.08  E-value=0.61  Score=40.23  Aligned_cols=174  Identities=10%  Similarity=0.012  Sum_probs=88.4

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec----CcceEecCCcCceeecCCCCcCccCceEEEEEcCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT----PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDR  152 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g----g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~  152 (392)
                      ..+..||+. ++...............++.. +|.+|+..    +++++|+.  ++..... ++..-.. ...+..+.  
T Consensus        83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~-~~~~~~~-~~~i~~d~--  155 (300)
T 2qc5_A           83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEYD-LPNKGSY-PAFITLGS--  155 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEEE-CSSTTCC-EEEEEECT--
T ss_pred             CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEcc-CCCCCCC-ceeEEECC--
Confidence            457888888 665443221111222344443 77888864    24788876  3333221 1111111 11222222  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVF  230 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~  230 (392)
                                  ++++|+....           ...+.+||+ +++..... .+.....      ...+.+  +|.+|+.
T Consensus       156 ------------~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~-~~~~~~~------~~~i~~d~~g~l~v~  204 (300)
T 2qc5_A          156 ------------DNALWFTENQ-----------NNSIGRITN-TGKLEEYP-LPTNAAA------PVGITSGNDGALWFV  204 (300)
T ss_dssp             ------------TSSEEEEETT-----------TTEEEEECT-TCCEEEEE-CSSTTCC------EEEEEECTTSSEEEE
T ss_pred             ------------CCCEEEEecC-----------CCeEEEECC-CCcEEEee-CCCCCCC------cceEEECCCCCEEEE
Confidence                        5678876421           125888888 66665432 1221111      233333  5789988


Q ss_pred             eecccEEEEEECCCCceeecccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          231 GIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       231 gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                      ....+.|..||+ ++++........ ......++ .-+|+||+....      ...|.++|+. .+...
T Consensus       205 ~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~~-g~~~~  264 (300)
T 2qc5_A          205 EIMGNKIGRITT-TGEISEYDIPTP-NARPHAITAGKNSEIWFTEWG------ANQIGRITND-NTIQE  264 (300)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEE
T ss_pred             ccCCCEEEEEcC-CCcEEEEECCCC-CCCceEEEECCCCCEEEeccC------CCeEEEECCC-CcEEE
Confidence            766678999999 566655432211 11112233 337888887621      2456677874 44443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.08  E-value=0.58  Score=39.95  Aligned_cols=184  Identities=10%  Similarity=-0.011  Sum_probs=86.9

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeecC---cceEecCCc-CceeecCCCCcCccCceEEEEEcCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTTP---RFGFSRILN-TSWHLTSPLRFSRINPLVGVFYDHDR  152 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~gg---~~~ynp~~~-~~W~~~~~~~~~r~~~~~~~~~~~~~  152 (392)
                      ..++.+|+.+++...+......  -.+++.. +|..+++++   ++++|.. + ++...+........-..+...     
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~~--v~~~~~spdg~~l~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s-----   93 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPEL--FEAPNWSPDGKYLLLNSEGLLYRLSLA-GDPSPEKVDTGFATICNNDHGIS-----   93 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESSC--CEEEEECTTSSEEEEEETTEEEEEESS-SCCSCEECCCTTCCCBCSCCEEC-----
T ss_pred             eeEEEEeCCCCceeeeccCCcc--eEeeEECCCCCEEEEEcCCeEEEEeCC-CCCCceEeccccccccccceEEC-----
Confidence            5678888887776544322111  1122222 444333322   3678887 5 555444322211111112121     


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCE-EEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGR-FYVF  230 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~-ly~~  230 (392)
                                . +++.+++++..       ......++.++..++.-+.+......         ...... +++ |++.
T Consensus        94 ----------p-dg~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           94 ----------P-DGALYAISDKV-------EFGKSAIYLLPSTGGTPRLMTKNLPS---------YWHGWSPDGKSFTYC  146 (297)
T ss_dssp             ----------T-TSSEEEEEECT-------TTSSCEEEEEETTCCCCEECCSSSSE---------EEEEECTTSSEEEEE
T ss_pred             ----------C-CCCEEEEEEeC-------CCCcceEEEEECCCCceEEeecCCCc---------cceEECCCCCEEEEE
Confidence                      1 45555554421       11234788888777665444321110         222222 444 5545


Q ss_pred             eeccc--EEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          231 GIYSF--SVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       231 gg~~~--~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      +...+  .|+.+|..+.....+.....  .........+++.+++.+...   ....+|.++..+.....+..
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~---~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEG--RNDGPDYSPDGRWIYFNSSRT---GQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSS--CEEEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCEEECCC
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCC--ccccceECCCCCEEEEEecCC---CCccEEEECCCCCCcEEEec
Confidence            55444  56666777666555433221  111222233666555443221   16789998877666555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.07  E-value=0.0027  Score=62.15  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=29.4

Q ss_pred             CcccCCcHHHHHHHHhhCC-hhhHHHhhccchhhhhh
Q 016239            8 SAFTTLSTDITERILSLLP-IPTLIRASSVCKSWRSI   43 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP-~~~l~~~~~v~k~W~~l   43 (392)
                      ..|..||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4699999999999999999 99999999999999987

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.03  E-value=0.51  Score=41.29  Aligned_cols=105  Identities=19%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+++.|+.+           ..+.+||..+++-...  ++.. ...     ...+.+  ++.+++.|+..+.|..||+
T Consensus       118 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~--~~~~-~~~-----v~~~~~~~~~~~l~~~~~d~~i~~wd~  178 (312)
T 4ery_A          118 QSNLIVSGSFD-----------ESVRIWDVKTGKCLKT--LPAH-SDP-----VSAVHFNRDGSLIVSSSYDGLCRIWDT  178 (312)
T ss_dssp             SSSEEEEEETT-----------SCEEEEETTTCCEEEE--ECCC-SSC-----EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCEEEEE--ecCC-CCc-----EEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            45566666541           2588889876543211  1111 111     222333  5778888888899999999


Q ss_pred             CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .+.+-...-...............+++.++.++.++    .+.+|  |..+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iw--d~~~~  224 (312)
T 4ery_A          179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLW--DYSKG  224 (312)
T ss_dssp             TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEE--ETTTT
T ss_pred             CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEE--ECCCC
Confidence            876543221111111111112233677777765433    67777  55443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.01  E-value=0.29  Score=49.60  Aligned_cols=179  Identities=10%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             CceeeeeCCCCceeeCCCCCC--CCCc-ceEEee-cceEEee--cCcceEecCCcCceeecCCCC--cC-ccCceEEEEE
Q 016239           78 NQSFAFDPASNSWFHLPPAQE--PRAG-SCFIGA-NGFFFTT--TPRFGFSRILNTSWHLTSPLR--FS-RINPLVGVFY  148 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~--~r~~-~~~~~~-~g~i~v~--gg~~~ynp~~~~~W~~~~~~~--~~-r~~~~~~~~~  148 (392)
                      ..+..||+.++++........  +... .+++.. +|.|++.  +|.++||+. +++|+......  .. ..........
T Consensus       427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~  505 (795)
T 4a2l_A          427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPE-QRSFTTIEKEKDGTPVVSKQITTLFR  505 (795)
T ss_dssp             TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETT-TTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred             CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCC-CCeEEEccccccccccCCceEEEEEE
Confidence            346778888877766543211  1111 123322 6777776  467999998 78887765331  11 1112222232


Q ss_pred             cCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC--CCCCCCCCCccceeeEEE--C
Q 016239          149 DHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL--PADFRSGYSSQYLSSALF--R  224 (392)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~--~  224 (392)
                      +.              ++.+++....             .+.+||+.++++ .....  .......    ...+...  +
T Consensus       506 d~--------------~g~lWigt~~-------------Gl~~~~~~~~~~-~~~~~~~~~~l~~~----~i~~i~~d~~  553 (795)
T 4a2l_A          506 DS--------------HKRLWIGGEE-------------GLSVFKQEGLDI-QKASILPVSNVTKL----FTNCIYEASN  553 (795)
T ss_dssp             CT--------------TCCEEEEESS-------------CEEEEEEETTEE-EECCCSCSCGGGGS----CEEEEEECTT
T ss_pred             CC--------------CCCEEEEeCC-------------ceEEEeCCCCeE-EEecCCCCCCCCCC----eeEEEEECCC
Confidence            22              6777775421             377788877776 32211  0000000    1222333  4


Q ss_pred             CEEEEEeecccEEEEEECCCCceeecccCC--CCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLR--PPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~--~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      |.|++-+. . -|..||+.++++.......  +... ..+++. .+|+|++.+        ...+.+||+.+.+++...
T Consensus       554 g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t--------~~Gl~~~~~~~~~~~~~~  621 (795)
T 4a2l_A          554 GIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLST--------NRGISCFNPETEKFRNFT  621 (795)
T ss_dssp             SCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEE--------TTEEEEEETTTTEEEEEC
T ss_pred             CCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEc--------CCceEEEcCCCCcEEEcC
Confidence            67766443 3 6999999999888764321  1122 223333 368888876        234667799888877554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.94  E-value=0.43  Score=42.07  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=44.9

Q ss_pred             EEEEEeecccEEEEEECC--CCceeecccCCCCcccceeEEeeCCe-EEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          226 RFYVFGIYSFSVSSFDLK--KHVWSEVQTLRPPGVMFSFLIASPNM-LVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       226 ~ly~~gg~~~~i~~yd~~--~~~W~~i~~~~~~~~~~~~~~~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      .||+.+...+.|..||+.  +++++.+...+....-.......+|+ ||+.+...    ..+.+|.+|..+.+++.+..+
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS----HHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT----CEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC----CeEEEEEEcCCCceeeEcccc
Confidence            677776667889999987  55666654433222211222233565 44443222    278899999888888877665


Q ss_pred             CH
Q 016239          303 PH  304 (392)
Q Consensus       303 p~  304 (392)
                      +.
T Consensus       320 ~~  321 (343)
T 1ri6_A          320 AV  321 (343)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.94  E-value=0.69  Score=40.67  Aligned_cols=215  Identities=13%  Similarity=0.046  Sum_probs=102.9

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec----C--cceEecCCcCceeecCC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT----P--RFGFSRILNTSWHLTSP  134 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g----g--~~~ynp~~~~~W~~~~~  134 (392)
                      ++.+|+....     ...++.+|+..+.-.... .  +...++++.. +|.+|+..    +  ++++|+. +++.+.+..
T Consensus        42 ~g~lyv~d~~-----~~~I~~~d~~g~~~~~~~-~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~  112 (306)
T 2p4o_A           42 DGTIFVTNHE-----VGEIVSITPDGNQQIHAT-V--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLT  112 (306)
T ss_dssp             TSCEEEEETT-----TTEEEEECTTCCEEEEEE-C--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEE
T ss_pred             CCCEEEEeCC-----CCeEEEECCCCceEEEEe-C--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEe
Confidence            4456665321     246788888764322111 1  1122344443 67788774    2  4677877 566665544


Q ss_pred             CCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC---CeecCCC----CC-
Q 016239          135 LRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD---SWELCPP----LP-  206 (392)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~---~W~~~~~----~~-  206 (392)
                      .+..+.....+..  .              ++.+|+.-..           ...++++|+.++   .|..-+.    .+ 
T Consensus       113 ~~~~~~~~g~~~~--~--------------~~~~~v~d~~-----------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~  165 (306)
T 2p4o_A          113 LPDAIFLNGITPL--S--------------DTQYLTADSY-----------RGAIWLIDVVQPSGSIWLEHPMLARSNSE  165 (306)
T ss_dssp             CTTCSCEEEEEES--S--------------SSEEEEEETT-----------TTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             CCCccccCccccc--C--------------CCcEEEEECC-----------CCeEEEEeCCCCcEeEEEECCcccccccc
Confidence            4433333233222  1              4556665311           125778887653   2211100    11 


Q ss_pred             CCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC-CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCcee
Q 016239          207 ADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK-HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFN  285 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~-~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~  285 (392)
                      .....     ......-++.||+.....+.|.+||+.. .+............-....+..+|+||+....      ...
T Consensus       166 ~~~~~-----pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~------~~~  234 (306)
T 2p4o_A          166 SVFPA-----ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNS  234 (306)
T ss_dssp             CCSCS-----EEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCC
T ss_pred             CCCCc-----CCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCC------CCe
Confidence            11011     1222233458999887778999999875 22211111000001111123347889887532      235


Q ss_pred             EEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEe-----CCEEEEEec
Q 016239          286 LWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGL-----GNLIYVFNE  336 (392)
Q Consensus       286 v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~gg  336 (392)
                      |.++|++. +...+...+...            ....+++..     ++.|||...
T Consensus       235 V~~~~~~G-~~~~~~~~~~~~------------~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          235 VVRIAPDR-STTIIAQAEQGV------------IGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEECTTC-CEEEEECGGGTC------------TTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEECCCC-CEEEEeeccccc------------CCceEEEEecccCCCCEEEEECC
Confidence            66778764 333333332211            123444443     378999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.90  E-value=0.6  Score=43.23  Aligned_cols=104  Identities=11%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.+++.|+.+           ..+.+||..+++-...  +... ...     ...+.+++..++.|+.++.|..||..+
T Consensus       182 ~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~--~~~h-~~~-----v~~l~~~~~~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          182 DERVIITGSSD-----------STVRVWDVNTGEMLNT--LIHH-CEA-----VLHLRFNNGMMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             CSSEEEEEETT-----------SCEEEEESSSCCEEEE--ECCC-CSC-----EEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred             CCCEEEEEcCC-----------CeEEEEECCCCcEEEE--EcCC-CCc-----EEEEEEcCCEEEEeeCCCcEEEEeCCC
Confidence            45666666641           2588888877653221  1111 111     344455677788888889999999987


Q ss_pred             Cceeec-ccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          245 HVWSEV-QTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       245 ~~W~~i-~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ..-... ........... .+..+++.++.|+.++    .+.+|  |..+.
T Consensus       243 ~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~~~dg----~i~vw--d~~~~  286 (435)
T 1p22_A          243 PTDITLRRVLVGHRAAVN-VVDFDDKYIVSASGDR----TIKVW--NTSTC  286 (435)
T ss_dssp             SSCCEEEEEECCCSSCEE-EEEEETTEEEEEETTS----EEEEE--ETTTC
T ss_pred             CCCceeeeEecCCCCcEE-EEEeCCCEEEEEeCCC----eEEEE--ECCcC
Confidence            643211 11111111112 2334677777765433    67777  66554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.90  E-value=0.85  Score=42.43  Aligned_cols=92  Identities=12%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeC
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASP  267 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~  267 (392)
                      .+.+||..+++-.  ..+... ...     ...+..++...+.|+.++.|..||+.+..-.....  ............+
T Consensus       333 ~i~vwd~~~~~~~--~~~~~h-~~~-----v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~  402 (464)
T 3v7d_B          333 TIRIWDLENGELM--YTLQGH-TAL-----VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVS  402 (464)
T ss_dssp             CEEEEETTTTEEE--EEECCC-SSC-----EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEEC
T ss_pred             cEEEEECCCCcEE--EEEeCC-CCc-----EEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeC
Confidence            5888998765422  111111 111     44556678888888888999999998764222111  1111222234557


Q ss_pred             CeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          268 NMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       268 g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      +++++.|+ ++    .+.+|  |..+.+-
T Consensus       403 ~~~l~~~~-dg----~i~iw--d~~~g~~  424 (464)
T 3v7d_B          403 DNILVSGS-EN----QFNIY--NLRSGKL  424 (464)
T ss_dssp             SSEEEEEE-TT----EEEEE--ETTTCCE
T ss_pred             CCEEEEec-CC----eEEEE--ECCCCcE
Confidence            78777776 32    67888  6666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.90  E-value=0.84  Score=40.30  Aligned_cols=192  Identities=11%  Similarity=0.017  Sum_probs=93.7

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec--------CcceEecCCcCcee-
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT--------PRFGFSRILNTSWH-  130 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g--------g~~~ynp~~~~~W~-  130 (392)
                      .++.+++.+...     ..++.||+.+++...+.... ...-.+++.. +|.+|+.+        +++++|+. +++.. 
T Consensus        54 ~~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~  126 (333)
T 2dg1_A           54 RQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQD  126 (333)
T ss_dssp             TTSCEEEEETTT-----CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEE
T ss_pred             CCCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEE
Confidence            344566654322     46888999888776543111 1112234443 67777763        46788987 55543 


Q ss_pred             ecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCC
Q 016239          131 LTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFR  210 (392)
Q Consensus       131 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~  210 (392)
                      .+...... .......+ +.              ++++|+......     .......++.+|+.+++.+.+..-.   .
T Consensus       127 ~~~~~~~~-~~~~~i~~-d~--------------~g~l~v~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~---~  182 (333)
T 2dg1_A          127 IIEDLSTA-YCIDDMVF-DS--------------KGGFYFTDFRGY-----STNPLGGVYYVSPDFRTVTPIIQNI---S  182 (333)
T ss_dssp             EECSSSSC-CCEEEEEE-CT--------------TSCEEEEECCCB-----TTBCCEEEEEECTTSCCEEEEEEEE---S
T ss_pred             EEccCccC-CcccceEE-CC--------------CCCEEEEecccc-----ccCCCceEEEEeCCCCEEEEeecCC---C
Confidence            22221111 11111222 22              567887543210     0112346888888776655442100   1


Q ss_pred             CCCCccceeeEEE--CC-EEEEEeecccEEEEEECCCC--ceeecc-----cCCCCcccceeEEeeCCeEEEEEeecCCC
Q 016239          211 SGYSSQYLSSALF--RG-RFYVFGIYSFSVSSFDLKKH--VWSEVQ-----TLRPPGVMFSFLIASPNMLVLAGMCNAPR  280 (392)
Q Consensus       211 ~~~~~~~~~~~~~--~g-~ly~~gg~~~~i~~yd~~~~--~W~~i~-----~~~~~~~~~~~~~~~~g~l~v~gg~~~~~  280 (392)
                      .      .....+  +| .||+.....+.|..||+.++  ....+.     .......-....+..+|+||+....    
T Consensus       183 ~------~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~----  252 (333)
T 2dg1_A          183 V------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----  252 (333)
T ss_dssp             S------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred             c------ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence            1      222223  44 58887766678999998542  232211     1111111111223337888886532    


Q ss_pred             CCceeEEEeecCccc
Q 016239          281 GPSFNLWKVDELSME  295 (392)
Q Consensus       281 ~~~~~v~~~d~~~~~  295 (392)
                        ...|++||++...
T Consensus       253 --~~~v~~~d~~g~~  265 (333)
T 2dg1_A          253 --QGRVLVFNKRGYP  265 (333)
T ss_dssp             --TTEEEEECTTSCE
T ss_pred             --CCEEEEECCCCCE
Confidence              2345666886543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.88  E-value=0.53  Score=40.88  Aligned_cols=230  Identities=12%  Similarity=-0.012  Sum_probs=110.1

Q ss_pred             CceeeeeCCCCc--eeeCCCCCCCCCcceEEeecceEEeecC--cceEecCCcCceeecCCCCcCccCceEEEEEcCCCC
Q 016239           78 NQSFAFDPASNS--WFHLPPAQEPRAGSCFIGANGFFFTTTP--RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRG  153 (392)
Q Consensus        78 ~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~g~i~v~gg--~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~  153 (392)
                      ..+.++|+++++  |+.-..-. ...+...+..+|.+++.+.  +..+|+.-...|+.-.+.  ....+++....     
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~~--~~~~~~~~~~~-----   86 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPA--GCEMQTARILP-----   86 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEECBSEEEEECTTSCEEEEEECCT--TCEEEEEEECT-----
T ss_pred             CEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCCC--CccccccEECC-----
Confidence            567888987766  54322110 1112223334777777533  478898522266643321  11112222221     


Q ss_pred             cccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC-CeecCC--CCCCCCCCCCCccceeeEEECCEEEEE
Q 016239          154 HCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD-SWELCP--PLPADFRSGYSSQYLSSALFRGRFYVF  230 (392)
Q Consensus       154 ~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~-~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~ly~~  230 (392)
                                 ++++++....          ....+..+|+..+ .|+...  ..+......    .......+|.+++.
T Consensus        87 -----------dG~~lv~~~~----------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~----~~v~~~~~G~~lv~  141 (276)
T 3no2_A           87 -----------DGNALVAWCG----------HPSTILEVNMKGEVLSKTEFETGIERPHAQF----RQINKNKKGNYLVP  141 (276)
T ss_dssp             -----------TSCEEEEEES----------TTEEEEEECTTSCEEEEEEECCSCSSGGGSC----SCCEECTTSCEEEE
T ss_pred             -----------CCCEEEEecC----------CCCEEEEEeCCCCEEEEEeccCCCCcccccc----cCceECCCCCEEEE
Confidence                       5666665432          0125667776433 243221  111100000    01223346777777


Q ss_pred             eecccEEEEEECCCC-ceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEeccc-CCHHH
Q 016239          231 GIYSFSVSSFDLKKH-VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSEIAI-MPHDF  306 (392)
Q Consensus       231 gg~~~~i~~yd~~~~-~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~~~~-~p~~~  306 (392)
                      ....+.|.+||++-+ .|+.-....+    .......+|.+++.+..      ...|..+|+++.  .|+.-.. ++...
T Consensus       142 ~~~~~~v~~~d~~G~~~w~~~~~~~~----~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          142 LFATSEVREIAPNGQLLNSVKLSGTP----FSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             ETTTTEEEEECTTSCEEEEEECSSCC----CEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             ecCCCEEEEECCCCCEEEEEECCCCc----cceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence            666789999999732 4554332111    22334457888887643      224667788743  3665321 22110


Q ss_pred             HHhhcCCcccCccceeEEEEeCCEEEEEeccccC-----CCCeEEEEeecCCCccceeeeec
Q 016239          307 LYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHK-----KYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~-----~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      +          ..-.......++.+||.....+.     .....++++|++-+   -.|+.-
T Consensus       212 l----------~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~---~~W~~~  260 (276)
T 3no2_A          212 L----------FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK---VVWQLN  260 (276)
T ss_dssp             C----------SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB---EEEEEC
T ss_pred             c----------cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC---EEEEec
Confidence            0          01133444678899998731111     02334677866333   248753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.79  E-value=1.7  Score=44.02  Aligned_cols=186  Identities=11%  Similarity=0.157  Sum_probs=97.3

Q ss_pred             ceeeeeCCCCceeeCCCCCCCCCcceEEe-ecceEEeec---CcceEecCCcCceeecCCCC---cCc-cCceEEEEEcC
Q 016239           79 QSFAFDPASNSWFHLPPAQEPRAGSCFIG-ANGFFFTTT---PRFGFSRILNTSWHLTSPLR---FSR-INPLVGVFYDH  150 (392)
Q Consensus        79 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~g~i~v~g---g~~~ynp~~~~~W~~~~~~~---~~r-~~~~~~~~~~~  150 (392)
                      .++.||+.++++......+....-.++.. .+|.|++..   |.++||+. +++++.....+   ... ...-.++..+.
T Consensus       194 Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  272 (795)
T 4a2l_A          194 GLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPK-TKEIKNYLHSPSNPKSISSNYIRSLAMDS  272 (795)
T ss_dssp             CEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETT-TTEEEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred             CEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCC-CCeEEEeecCCCCccccCCCeEEEEEEcC
Confidence            47889998888876643221111122332 377788763   67999998 67776543221   111 11122222222


Q ss_pred             CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEE
Q 016239          151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFY  228 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly  228 (392)
                                    ++.+++.. .           . .+.+||+.++.++.....+...... +.........  +|.|+
T Consensus       273 --------------~g~lWigt-~-----------~-Gl~~~~~~~~~~~~~~~~~~~~~~l-~~~~i~~i~~D~~g~lW  324 (795)
T 4a2l_A          273 --------------QNRLWIGT-F-----------N-DLNIYHEGTDSFASYSSNPVENGSL-SQRSVRSIFMDSQGGMW  324 (795)
T ss_dssp             --------------TSCEEEEE-S-----------S-CEEEEETTTTEEEEECCCTTSTTSC-SSSCEEEEEECTTSCEE
T ss_pred             --------------CCCEEEEe-C-----------C-hhheEcCCCCeEEEEecCCCCCCCC-CCCcEEEEEEeCCcCEE
Confidence                          56666642 1           1 4778899888887764322110000 0001122222  45555


Q ss_pred             EEeecccEEEEEECCCCceeecccCCC----CcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          229 VFGIYSFSVSSFDLKKHVWSEVQTLRP----PGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       229 ~~gg~~~~i~~yd~~~~~W~~i~~~~~----~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                       +|...+-|..||+.++.++.....+.    ......+++. .+|.|++.. .      ...+..||+.+.+++....
T Consensus       325 -igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt-~------~~Gl~~~~~~~~~~~~~~~  394 (795)
T 4a2l_A          325 -LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT-N------DGGLNLYNPITQRFTSYTL  394 (795)
T ss_dssp             -EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEE-S------SSCEEEECTTTCCEEEECC
T ss_pred             -EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE-C------CCCeEEEcCCCCcEEEEec
Confidence             45555679999998888876643221    1111222333 267888743 1      1245667988888876653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.61  E-value=0.85  Score=43.97  Aligned_cols=243  Identities=9%  Similarity=-0.023  Sum_probs=107.5

Q ss_pred             cCCcHHHHHHHHhhCC---h-hhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCC
Q 016239           11 TTLSTDITERILSLLP---I-PTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPA   86 (392)
Q Consensus        11 ~~Lp~dl~~~iL~rLP---~-~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~   86 (392)
                      ..|.++-+..|.+.|-   . ...+....+.+.|..+.........-  .......+.+|+.+...     ..+..+|..
T Consensus        95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~--~~~~~p~~~~~vs~~~d-----~~V~v~D~~  167 (543)
T 1nir_A           95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQ--LNDLDLPNLFSVTLRDA-----GQIALVDGD  167 (543)
T ss_dssp             TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSC--CSCCCGGGEEEEEEGGG-----TEEEEEETT
T ss_pred             cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCccc--ccccCCCCEEEEEEcCC-----CeEEEEECC
Confidence            5788888888876552   1 11122333444554333111000000  01223356677765533     457788988


Q ss_pred             CCceeeCCCCCCCCCcceEEee--cceEEeecC---cceEec--CCcCceeecCCCCcCccCceEEEEEcCCCCcccccC
Q 016239           87 SNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP---RFGFSR--ILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLAS  159 (392)
Q Consensus        87 ~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg---~~~ynp--~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  159 (392)
                      +++....  ++.....+.++..  +..+|+.+.   +.+||.  . +.+-  +..++....-..++ +            
T Consensus       168 t~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~--~~~i~~g~~p~~va-~------------  229 (543)
T 1nir_A          168 SKKIVKV--IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTK--VAEIKIGIEARSVE-S------------  229 (543)
T ss_dssp             TCCEEEE--EECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEE--EEEEECCSEEEEEE-E------------
T ss_pred             CceEEEE--EecCcccceEEECCCCCEEEEECCCCeEEEEECcCC-CCcE--EEEEecCCCcceEE-e------------
Confidence            7764321  1211113444333  446777653   477887  4 3322  22222221111222 2            


Q ss_pred             Cccc----CCCeEEEEeceeecCcccccccceEEEEEeCCCCCeec-CCC--CCCCCCCCCCccceeeEEE---CCEEEE
Q 016239          160 GFAC----NLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWEL-CPP--LPADFRSGYSSQYLSSALF---RGRFYV  229 (392)
Q Consensus       160 ~~~~----~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~--~~~~~~~~~~~~~~~~~~~---~g~ly~  229 (392)
                        ..    ++..+|+....           ..++.++|..+.+-.. ++.  +...-...+.......+..   ++.+|+
T Consensus       230 --sp~~~~dg~~l~v~~~~-----------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          230 --SKFKGYEDRYTIAGAYW-----------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             --CCSTTCTTTEEEEEEEE-----------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             --CCCcCCCCCEEEEEEcc-----------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence              22    25567665432           1257788876654221 111  0000000000000222222   456777


Q ss_pred             EeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          230 FGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       230 ~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      .....+.|..+|..+.+-..+...+....-......-+|+.+++.....   ..+.+|  |..+.+-
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~---~~v~v~--D~~tg~l  358 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNS---NKVAVI--DSKDRRL  358 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGG---TEEEEE--ETTTTEE
T ss_pred             EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCC---CeEEEE--ECCCCeE
Confidence            6666789999998775321111111111111222334666544443221   156666  8776643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.60  E-value=1  Score=39.15  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=38.3

Q ss_pred             CEEEEEeecccEEEEEECCCCc--eeecccCCCCcccceeEEe-eC---CeEEEEEeecCCCCCceeEEEeecCccceE
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHV--WSEVQTLRPPGVMFSFLIA-SP---NMLVLAGMCNAPRGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~~~~~~~~~~~~~-~~---g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~  297 (392)
                      +.+++.|+.++.|..||..+.+  +..+..+.........+.. .+   +.+++.++.+.    .+.+|.++.....|.
T Consensus       170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~----~v~iWd~~~~~~~~~  244 (297)
T 2pm7_B          170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR----TCIIWTQDNEQGPWK  244 (297)
T ss_dssp             CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS----CEEEEEESSTTSCCE
T ss_pred             cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC----cEEEEEeCCCCCccc
Confidence            4577888888888888876543  5444333221111112222 23   36666665443    789996654444454

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.57  E-value=1.3  Score=40.27  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCe-EEEEEeecCCCCCceeEEEeecCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNM-LVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~-l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ++.+.+.|+..+.|..||+.+.+-...................++. +++.|+.++    .+.+|  |..+
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg----~i~vw--d~~~  322 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG----MLAQW--DLRS  322 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS----EEEEE--ETTC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC----eEEEE--EcCC
Confidence            6778888888889999999876532221111111111112223555 777776433    67777  5544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=95.57  E-value=1.2  Score=39.68  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=43.7

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP  303 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p  303 (392)
                      ++..++.++.++.|..||..+.+-...-...... ........++++++.| .++    .+.+|.++....+|..+..+.
T Consensus       213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~-~d~----~i~i~~~~~~~~~~~~~~~~~  286 (372)
T 1k8k_C          213 NGSRVAWVSHDSTVCLADADKKMAVATLASETLP-LLAVTFITESSLVAAG-HDC----FPVLFTYDSAAGKLSFGGRLD  286 (372)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC-EEEEEEEETTEEEEEE-TTS----SCEEEEEETTTTEEEECCCCC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCC-eEEEEEecCCCEEEEE-eCC----eEEEEEccCcCceEEEeeccC
Confidence            5677778888889999999876532221111111 1122233477776666 322    678886554447788776654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.57  E-value=0.87  Score=39.84  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=49.6

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA  265 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~  265 (392)
                      .+.+||..+++....-....   ..     ...+.+  ++..++.++..+.|..||+.+.+-.......  .........
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~---~~-----i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~v~~~~~s  233 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHT---DG-----ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYC  233 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCS---SC-----EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEEC
T ss_pred             cEEEEeCCCCceeeeeeccc---Cc-----eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC--CceEEEEEC
Confidence            58888887764332211111   11     223333  6778888888899999999876533321111  111122223


Q ss_pred             eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          266 SPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       266 ~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      .+++++++++.+.    .+.+|  |..+.+
T Consensus       234 ~~~~~l~~~~~~~----~i~~~--~~~~~~  257 (337)
T 1gxr_A          234 PTGEWLAVGMESS----NVEVL--HVNKPD  257 (337)
T ss_dssp             TTSSEEEEEETTS----CEEEE--ETTSSC
T ss_pred             CCCCEEEEEcCCC----cEEEE--ECCCCC
Confidence            4677777775432    56666  655443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.66  Score=46.71  Aligned_cols=115  Identities=10%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--C--CEEEEEeecccEEEEEE
Q 016239          166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--R--GRFYVFGIYSFSVSSFD  241 (392)
Q Consensus       166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~--g~ly~~gg~~~~i~~yd  241 (392)
                      +..++.|+.+           ..+.+||..++.|..+..+... ...     ...+.+  +  +.+++.|+.++.|..||
T Consensus        67 ~~~l~s~s~D-----------g~I~vwd~~~~~~~~~~~~~~h-~~~-----V~~v~~sp~~~~~~l~sgs~dg~I~vwd  129 (753)
T 3jro_A           67 GTILASCSYD-----------GKVLIWKEENGRWSQIAVHAVH-SAS-----VNSVQWAPHEYGPLLLVASSDGKVSVVE  129 (753)
T ss_dssp             CSEEEEEETT-----------SCEEEEEEETTEEEEEEEECCC-SSC-----EEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEeCC-----------CeEEEEECCCCcccccccccCC-CCC-----eEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence            6677777652           2588888888877666543322 111     233333  3  77888899889999999


Q ss_pred             CCCCceeecccCCCCcccceeEEee--------------CCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFLIAS--------------PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~~~~--------------~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      ..+..-...............+...              ++.+++.|+.++    .+.+|.+......+..+..
T Consensus       130 l~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             CCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS----CEEEEEEETTTTEEEEEEE
T ss_pred             eecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC----eEEEEeccCCcccceeeee
Confidence            9876322111111111111111111              366777776443    6888866555555555444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.45  E-value=1.2  Score=39.41  Aligned_cols=103  Identities=11%  Similarity=0.107  Sum_probs=56.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeec-CCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWEL-CPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~  242 (392)
                      +++.++.|+.+           ..+.+||..+++-.. +.....+  .      .+.+. -++.+++.|+.++.|..||.
T Consensus       175 dg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~~h~~~--v------~~l~~spd~~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          175 DGKYLASGAID-----------GIINIFDIATGKLLHTLEGHAMP--I------RSLTFSPDSQLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTTEEEEEECCCSSC--C------CEEEECTTSCEEEEECTTSCEEEEET
T ss_pred             CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEcccCCc--e------eEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence            56677776641           258889987764321 1111111  1      12222 26788888888889999999


Q ss_pred             CCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          243 KKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .+.+....  +.........+ ...++++++.|+.+.    .+.+|  |..+.
T Consensus       236 ~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~D~----~v~iw--d~~~~  280 (321)
T 3ow8_A          236 QHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSSDK----SVKVW--DVGTR  280 (321)
T ss_dssp             TTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS----CEEEE--ETTTT
T ss_pred             CCcceeEE--EcCCCCceEEEEECCCCCEEEEEeCCC----cEEEE--eCCCC
Confidence            87654322  11111111122 223677777776543    68888  65544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.34  E-value=0.12  Score=47.82  Aligned_cols=69  Identities=13%  Similarity=0.151  Sum_probs=41.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++++++.++.+           ..+.+||..+++.......... ... . .....+.+  ++.+++.++..+.|..||+
T Consensus       133 ~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~-~~~-~-~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          133 NTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKY-KKK-L-GFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHH-HTT-C-CEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCeEEEEeCCC-----------CeEEEEECCCCeEeeecCcccc-ccc-C-CceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            56777776541           2588999888766543221110 000 0 01222333  6889999888899999999


Q ss_pred             CCCce
Q 016239          243 KKHVW  247 (392)
Q Consensus       243 ~~~~W  247 (392)
                      .+.+.
T Consensus       199 ~~~~~  203 (433)
T 3bws_A          199 KTLAY  203 (433)
T ss_dssp             TTCCE
T ss_pred             CCceE
Confidence            87654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.23  Score=50.08  Aligned_cols=177  Identities=11%  Similarity=0.059  Sum_probs=88.5

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcc-eEEee-c--ceEEeecC----cceEecCCcCceeecCCCCcCccCceEEEEEc
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGS-CFIGA-N--GFFFTTTP----RFGFSRILNTSWHLTSPLRFSRINPLVGVFYD  149 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~--g~i~v~gg----~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~  149 (392)
                      ..+..||....++..+..+....... ++... +  +..++.|+    +.+||.. +++|..+..+.........+.+. 
T Consensus        31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~-~~~~~~~~~~~~h~~~V~~v~~s-  108 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NGRWSQIAVHAVHSASVNSVQWA-  108 (753)
T ss_dssp             TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEEC-
T ss_pred             CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC-CCcccccccccCCCCCeEEEEEC-
Confidence            35677787666665544443333222 23322 2  44555543    3678887 67665544443222222222221 


Q ss_pred             CCCCcccccCCcccCC--CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE----
Q 016239          150 HDRGHCDLASGFACNL--PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF----  223 (392)
Q Consensus       150 ~~~~~~~~~~~~~~~~--~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~----  223 (392)
                      +              +  +.+++.|+.+           ..+.+||..++.-.....+... ...     ...+.+    
T Consensus       109 p--------------~~~~~~l~sgs~d-----------g~I~vwdl~~~~~~~~~~~~~~-~~~-----v~~l~~~p~~  157 (753)
T 3jro_A          109 P--------------HEYGPLLLVASSD-----------GKVSVVEFKENGTTSPIIIDAH-AIG-----VNSASWAPAT  157 (753)
T ss_dssp             C--------------GGGCSEEEEEETT-----------SEEEEEECCSSSCCCCEEEECC-SSC-----EEEEEECCCC
T ss_pred             C--------------CCCCCEEEEEeCC-----------CcEEEEEeecCCCcceeEeecC-CCc-----eEEEEecCcc
Confidence            1              3  6777777652           2688888776532111111000 000     122222    


Q ss_pred             -----------CCEEEEEeecccEEEEEECCCC--ceeecccCCCCcccceeEE-eeC---CeEEEEEeecCCCCCceeE
Q 016239          224 -----------RGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPPGVMFSFLI-ASP---NMLVLAGMCNAPRGPSFNL  286 (392)
Q Consensus       224 -----------~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~~~~~~~~~-~~~---g~l~v~gg~~~~~~~~~~v  286 (392)
                                 ++.+++.|+.++.|..||..+.  .+..+............+. ..+   +++++.|+.++    .+.+
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg----~I~i  233 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR----TCII  233 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS----CEEE
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC----EEEE
Confidence                       3677888888889999988654  3333333222111122222 224   67887776543    6888


Q ss_pred             EEeec
Q 016239          287 WKVDE  291 (392)
Q Consensus       287 ~~~d~  291 (392)
                      |.++.
T Consensus       234 wd~~~  238 (753)
T 3jro_A          234 WTQDN  238 (753)
T ss_dssp             EEESS
T ss_pred             ecCCC
Confidence            85544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.33  E-value=1.4  Score=38.99  Aligned_cols=198  Identities=8%  Similarity=-0.072  Sum_probs=99.7

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC----cceEecCCc----Cceeec-C-CCCcCccCceEE
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP----RFGFSRILN----TSWHLT-S-PLRFSRINPLVG  145 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg----~~~ynp~~~----~~W~~~-~-~~~~~r~~~~~~  145 (392)
                      .++..+|+..+....+-+  ......+++..  ++.||+...    .+++++. +    .....+ + .+..   -.+++
T Consensus        10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~---p~gla   83 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLD-RAHGVSSYDTVISRDIQA---PDGLA   83 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSC---CCEEE
T ss_pred             CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECC-CCCCCcccEEEEeCCCCC---cCEEE
Confidence            456778887766544321  11222345443  678998743    3677775 3    111211 1 1111   12333


Q ss_pred             EEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE
Q 016239          146 VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF  223 (392)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~  223 (392)
                      +-  .             .++.||+.-..           ...++++|+....-+.+.  .+..+         ...++.
T Consensus        84 vd--~-------------~~~~ly~~d~~-----------~~~I~~~~~~g~~~~~~~~~~~~~P---------~~iavd  128 (316)
T 1ijq_A           84 VD--W-------------IHSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRENGSKP---------RAIVVD  128 (316)
T ss_dssp             EE--T-------------TTTEEEEEETT-----------TTEEEEEETTSSSEEEEEECTTCCE---------EEEEEE
T ss_pred             Ee--e-------------cCCeEEEEECC-----------CCEEEEEeCCCCceEEEEECCCCCc---------ceEEeC
Confidence            31  0             16789987422           226788887654333221  12111         333443


Q ss_pred             --CCEEEEEeecc-cEEEEEECCCCceeecccCCCCcccceeEEee--CCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          224 --RGRFYVFGIYS-FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       224 --~g~ly~~gg~~-~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                        +|.||+..... +.|+++++....-+.+.....  .....++..  +++||+....      ...|+++|.+...-+.
T Consensus       129 p~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~--~~P~gla~d~~~~~lY~~D~~------~~~I~~~d~dg~~~~~  200 (316)
T 1ijq_A          129 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKT  200 (316)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEE
T ss_pred             CCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCC--CCceEEEEeccCCEEEEEECC------CCeEEEEecCCCceEE
Confidence              68999986443 689999986543333321111  112233433  7899987632      3456666766543333


Q ss_pred             cccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          299 IAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       299 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                      +...+...            ....++++.++.||+...
T Consensus       201 ~~~~~~~~------------~~P~giav~~~~ly~~d~  226 (316)
T 1ijq_A          201 ILEDEKRL------------AHPFSLAVFEDKVFWTDI  226 (316)
T ss_dssp             EEECTTTT------------SSEEEEEEETTEEEEEET
T ss_pred             EeecCCcc------------CCcEEEEEECCEEEEEEC
Confidence            32221111            125677778899999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.24  E-value=1.8  Score=39.83  Aligned_cols=101  Identities=9%  Similarity=-0.019  Sum_probs=54.5

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeec-c--cEEEEEECCCCceeecccCCCCcccce
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIY-S--FSVSSFDLKKHVWSEVQTLRPPGVMFS  261 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~-~--~~i~~yd~~~~~W~~i~~~~~~~~~~~  261 (392)
                      ..++++|..+++...+......         ...+.+  +|+..++++. .  ..|+.+|+.+.+-..+....  .....
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~~---------~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~  315 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRSN---------NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG--SQNQD  315 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSSC---------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS--SEEEE
T ss_pred             ceEEEEECCCCCEEeCcCCCCc---------ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC--CcccC
Confidence            3689999988877655432211         222333  5654444433 2  27999999887644432211  11112


Q ss_pred             eEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          262 FLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       262 ~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      .....+|+.++++.....   ...|+.+|..+.+...+..
T Consensus       316 ~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~  352 (415)
T 2hqs_A          316 ADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSS  352 (415)
T ss_dssp             EEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCC
T ss_pred             eEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecC
Confidence            223346776655543321   3567777888877665443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.24  E-value=1.6  Score=39.17  Aligned_cols=94  Identities=12%  Similarity=0.014  Sum_probs=48.8

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE---CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEE
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF---RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI  264 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~  264 (392)
                      .+.+||..+.+-......... ..     ....+.+   ++.+++.|+..+.|..||+.+.+-..  ...........+.
T Consensus       205 ~v~~wd~~~~~~~~~~~~~~~-~~-----~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~l~  276 (357)
T 4g56_B          205 RILLWDTRKPKPATRIDFCAS-DT-----IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ--TSAVHSQNITGLA  276 (357)
T ss_dssp             CEEECCTTSSSCBCBCCCTTC-CS-----CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE--EECCCSSCEEEEE
T ss_pred             ceEEEECCCCceeeeeeeccc-cc-----cccchhhhhcccceEEEeecccceeEEECCCCcEeE--EEeccceeEEEEE
Confidence            588888877653322221111 11     1233333   36788888888899999997754221  1111111112222


Q ss_pred             e-eCC-eEEEEEeecCCCCCceeEEEeecCccc
Q 016239          265 A-SPN-MLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       265 ~-~~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      . .++ ++++.|+.+.    .+.||  |..+.+
T Consensus       277 ~sp~~~~~lasgs~D~----~i~iw--d~~~~~  303 (357)
T 4g56_B          277 YSYHSSPFLASISEDC----TVAVL--DADFSE  303 (357)
T ss_dssp             ECSSSSCCEEEEETTS----CEEEE--CTTSCE
T ss_pred             EcCCCCCEEEEEeCCC----EEEEE--ECCCCc
Confidence            2 244 5666565433    67888  766554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.22  E-value=3  Score=42.14  Aligned_cols=132  Identities=8%  Similarity=-0.111  Sum_probs=74.5

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE--CCEEEEEe-ecccEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF--RGRFYVFG-IYSFSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~--~g~ly~~g-g~~~~i~~  239 (392)
                      +++||+.-..           ...|++++.....-+.+.  .+..+         .+.++.  +|.|||.. |....|++
T Consensus       482 ~~~LY~tD~~-----------~~~I~v~~ldG~~~~~l~~~~l~~P---------~gIaVDp~~g~LYwtD~g~~~~I~~  541 (791)
T 3m0c_C          482 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRENGSKP---------RAIVVDPVHGFMYWTDWGTPAKIKK  541 (791)
T ss_dssp             TTEEEEEETT-----------TTEEEEEETTSSSEEEEEECTTCCE---------EEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCcEEEEecC-----------CCeEEEEeCCCCeEEEEEeCCCCCc---------ceEEEecCCCCEEEecCCCCCeEEE
Confidence            6789988432           236888888665544442  22121         333332  58999986 43468999


Q ss_pred             EECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccC
Q 016239          240 FDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDD  317 (392)
Q Consensus       240 yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  317 (392)
                      +++....-..+.....  ..-..+++  .+++||+.-..      ...|+++|.+...=+.+..-...+           
T Consensus       542 ~~~dG~~~~~lv~~~l--~~P~GLavD~~~~~LYwaD~~------~~~I~~~d~dG~~~~~v~~~~~~l-----------  602 (791)
T 3m0c_C          542 GGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRL-----------  602 (791)
T ss_dssp             EETTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEECTTTT-----------
T ss_pred             EecCCCceEEEEeCCC--CCceEEEEecCCCeEEEEeCC------CCcEEEEecCCCceEEEecCCCcc-----------
Confidence            9986554333322111  11122333  47899998531      345777777654433332211111           


Q ss_pred             ccceeEEEEeCCEEEEEec
Q 016239          318 KFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       318 ~~~~~~~~~~~~~i~v~gg  336 (392)
                       ...+++++.+++||+...
T Consensus       603 -~~P~glav~~~~lYwtD~  620 (791)
T 3m0c_C          603 -AHPFSLAVFEDKVFWTDI  620 (791)
T ss_dssp             -SSEEEEEEETTEEEEEET
T ss_pred             -CCCCEEEEeCCEEEEEEC
Confidence             135678889999999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.15  E-value=0.41  Score=43.11  Aligned_cols=106  Identities=15%  Similarity=0.038  Sum_probs=53.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE---CCEEEEEeecccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF---RGRFYVFGIYSFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~g~ly~~gg~~~~i~~yd  241 (392)
                      +..+++.|+.+           ..+.+||..+.+-...-..... ...     ..++.+   ++.+++.|+.++.|..||
T Consensus       181 ~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~-~~~-----~~~~~~~p~~~~~l~sg~~dg~v~~wd  243 (344)
T 4gqb_B          181 KDSVFLSCSED-----------NRILLWDTRCPKPASQIGCSAP-GYL-----PTSLAWHPQQSEVFVFGDENGTVSLVD  243 (344)
T ss_dssp             CTTEEEEEETT-----------SCEEEEETTSSSCEEECC-----CCC-----EEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCCceeeeccc-----------cccccccccccceeeeeeccee-ecc-----ceeeeecCCCCcceEEeccCCcEEEEE
Confidence            44577766642           2588899877653222111111 100     222332   467888888889999999


Q ss_pred             CCCCceeecccCCCCcccceeEEee-CC-eEEEEEeecCCCCCceeEEEeecCccc
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFLIAS-PN-MLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ..+.+-  +..+.........+... ++ ++++.|+.+.    .+.||  |..+.+
T Consensus       244 ~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~----~i~vw--d~~~~~  291 (344)
T 4gqb_B          244 TKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDC----SLAVL--DSSLSE  291 (344)
T ss_dssp             SCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTS----CEEEE--CTTCCE
T ss_pred             CCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCC----eEEEE--ECCCCc
Confidence            976642  21111111111222222 44 5666665433    67888  766554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.14  E-value=1.2  Score=39.32  Aligned_cols=65  Identities=11%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +|++.+.|+..+.|..||+.+.+-...-...... ........++++++.|+.+.    .+.+|  |..+..
T Consensus       175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~spd~~~l~s~s~dg----~i~iw--d~~~~~  239 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-IRSLTFSPDSQLLVTASDDG----YIKIY--DVQHAN  239 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-CCEEEECTTSCEEEEECTTS----CEEEE--ETTTCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc-eeEEEEcCCCCEEEEEcCCC----eEEEE--ECCCcc
Confidence            6788888888899999999877533221111111 11222333777777776443    67888  655443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.13  E-value=1.3  Score=37.62  Aligned_cols=158  Identities=11%  Similarity=-0.044  Sum_probs=79.2

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec----CcceEecCCcCceeecCCCCcCccCceEEEEEcCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT----PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDR  152 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g----g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~  152 (392)
                      ..+..||+..+....+.... ......++.. +|.+|+..    .+.++++. +.......... ...-..+++.  .  
T Consensus        87 ~~i~~~d~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~p~~i~~~--~--  159 (270)
T 1rwi_B           87 NRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQTVLPFTG-LNDPDGVAVD--N--  159 (270)
T ss_dssp             TEEEEECTTCSCCEECCCCS-CSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSCEECCCCS-CCSCCCEEEC--T--
T ss_pred             CEEEEEeCCCceEeeeecCC-cCCCcceEECCCCCEEEEECCCCEEEEEECC-CceeEeecccc-CCCceeEEEe--C--
Confidence            46788888776544332211 1122344444 77788863    24677765 33332221111 1111122222  1  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVF  230 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~  230 (392)
                                  ++++|+....           ...+.+||+.+..-........   ..     ...+.+  +|.+|+.
T Consensus       160 ------------~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~~---~~-----p~~i~~d~~g~l~v~  208 (270)
T 1rwi_B          160 ------------SGNVYVTDTD-----------NNRVVKLEAESNNQVVLPFTDI---TA-----PWGIAVDEAGTVYVT  208 (270)
T ss_dssp             ------------TCCEEEEEGG-----------GTEEEEECTTTCCEEECCCSSC---CS-----EEEEEECTTCCEEEE
T ss_pred             ------------CCCEEEEECC-----------CCEEEEEecCCCceEeecccCC---CC-----ceEEEECCCCCEEEE
Confidence                        5678887532           1268889887665333221111   11     233333  4689988


Q ss_pred             eecccEEEEEECCCCceeecccCCCCcccceeEEe-eCCeEEEEEe
Q 016239          231 GIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGM  275 (392)
Q Consensus       231 gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~g~l~v~gg  275 (392)
                      ....+.|..||+....-......  .......++. -+|+||+...
T Consensus       209 ~~~~~~v~~~~~~~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          209 EHNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             ETTTSCEEEECTTCSCCEECCCC--SCSCEEEEEECTTCCEEEEEG
T ss_pred             ECCCCcEEEEcCCCCcceeeccC--CCCCceeEEECCCCCEEEEEC
Confidence            76677899999976543332111  1111222333 3688888764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.96  E-value=1.3  Score=40.72  Aligned_cols=102  Identities=12%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++++++.|+.+           ..+.+||..+++-...  +... ..     ...+...++.+.+.|+..+.+..+|...
T Consensus       158 dg~~lasgs~D-----------g~v~iWd~~~~~~~~~--~~~h-~~-----~v~~~s~~~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          158 EGNYLAVGTSS-----------AEVQLWDVQQQKRLRN--MTSH-SA-----RVGSLSWNSYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTTEEEEE--ECCC-SS-----CEEEEEEETTEEEEEETTSEEEEEETTS
T ss_pred             CCCEEEEEECC-----------CeEEEEEcCCCcEEEE--EeCC-CC-----ceEEEeeCCCEEEEEeCCCceeEeeecc
Confidence            56777777652           2588899877643221  1111 11     1445566888888899889999999876


Q ss_pred             CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ......................+++.++.++.++    .+.+|..
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~----~v~i~~~  259 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN----LVNVWPS  259 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS----CEEEEES
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccc----cceEEee
Confidence            5433221111111111222333667666665443    5777744

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.93  E-value=1.1  Score=39.54  Aligned_cols=62  Identities=11%  Similarity=0.137  Sum_probs=34.4

Q ss_pred             CEEEEEeecccEEEEEECCC-CceeecccCCCCcccceeEEe-eC----CeEEEEEeecCCCCCceeEEEee
Q 016239          225 GRFYVFGIYSFSVSSFDLKK-HVWSEVQTLRPPGVMFSFLIA-SP----NMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~-~~W~~i~~~~~~~~~~~~~~~-~~----g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      +.+++.|+.++.|..+|..+ +.|..+..+.........+.. .+    +.+++.++.+.    .+.+|..+
T Consensus       179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~----~v~iw~~~  246 (316)
T 3bg1_A          179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG----RVFIWTCD  246 (316)
T ss_dssp             CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC----EEEEEECS
T ss_pred             cceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC----eEEEEEcc
Confidence            35677788888888888864 456655443321111112221 12    25666665443    78888543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.81  E-value=2.3  Score=38.79  Aligned_cols=196  Identities=7%  Similarity=-0.080  Sum_probs=101.6

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC----cceEecCCcCceeecC--CCCcCccCceEEEEEc
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP----RFGFSRILNTSWHLTS--PLRFSRINPLVGVFYD  149 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg----~~~ynp~~~~~W~~~~--~~~~~r~~~~~~~~~~  149 (392)
                      ..+..+++.......+..  ......+++..  ++.||+..-    ++++++. +...+.+.  .+..+   .++++-  
T Consensus        96 ~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~~~p---~glavd--  167 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESP---GGLAVD--  167 (386)
T ss_dssp             SCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEECSSCSCC---CCEEEE--
T ss_pred             ccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEEeCCCCCc---cEEEEE--
Confidence            456677776655444322  11222344433  678888732    3677776 44433321  11111   122221  


Q ss_pred             CCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE--CC
Q 016239          150 HDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF--RG  225 (392)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~--~g  225 (392)
                                   ..++.||+.-..           ...+++++.....-+.+.  .+..+         ...++.  ++
T Consensus       168 -------------~~~g~lY~~d~~-----------~~~I~~~~~dg~~~~~l~~~~l~~P---------~giavdp~~g  214 (386)
T 3v65_B          168 -------------WVHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEKP---------RAIALHPMEG  214 (386)
T ss_dssp             -------------TTTTEEEEEETT-----------TTEEEECBTTSCSCEEEECSSCSCE---------EEEEEETTTT
T ss_pred             -------------eCCCeEEEEcCC-----------CCeEEEEeCCCCceEEeecCCCCCC---------cEEEEEcCCC
Confidence                         116788887432           226778877654333221  11111         333443  68


Q ss_pred             EEEEEeecc-cEEEEEECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          226 RFYVFGIYS-FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       226 ~ly~~gg~~-~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      .||+..... ..|+++|+....-..+.....  .....++.  .+++||+....      ...|+++|.+...-+.+...
T Consensus       215 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~--~~PnGlavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~  286 (386)
T 3v65_B          215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHL--FWPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQ  286 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEEEECSSC--SCEEEEEEEGGGTEEEEEETT------TTEEEEECTTSCSCEEEECS
T ss_pred             eEEEeccCCCCEEEEEeCCCCCcEEEEECCC--CCeeeEEEeCCCCEEEEEECC------CCEEEEEeCCCCeeEEEEEC
Confidence            999986544 789999986543333322111  11122333  48899998632      34677777665332222211


Q ss_pred             CHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          303 PHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       303 p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                      ..              ....++++.++.||+...
T Consensus       287 ~~--------------~~P~giav~~~~ly~td~  306 (386)
T 3v65_B          287 GL--------------PHPFAITVFEDSLYWTDW  306 (386)
T ss_dssp             SC--------------SSEEEEEEETTEEEEEET
T ss_pred             CC--------------CCceEEEEECCEEEEeeC
Confidence            10              125677778999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.81  E-value=1.8  Score=37.59  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++++++.|+.+           ..+.+||..+++-...-....  ...     ...+.+  ++...+.++..+.|..||.
T Consensus       160 ~~~~l~~~~~d-----------~~i~~wd~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          160 DGSLIVSSSYD-----------GLCRIWDTASGQCLKTLIDDD--NPP-----VSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTCCEEEEECCSS--CCC-----EEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCceeeEEeccC--CCc-----eEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            55666666541           258889987665322110001  000     222222  5677778888899999999


Q ss_pred             CCCceeecccCCCCc-c-cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          243 KKHVWSEVQTLRPPG-V-MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~-~-~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .+.+-...-...... . ........++.+++.|+.++    .+.+|  |..+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----~i~vw--d~~~~  269 (312)
T 4ery_A          222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN----LVYIW--NLQTK  269 (312)
T ss_dssp             TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS----CEEEE--ETTTC
T ss_pred             CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC----EEEEE--ECCCc
Confidence            877533221111111 1 11112223667777665433    67777  65544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.75  E-value=0.83  Score=40.16  Aligned_cols=141  Identities=9%  Similarity=-0.069  Sum_probs=70.4

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cc-eEEeecC----cceEecCCcCce--eecC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NG-FFFTTTP----RFGFSRILNTSW--HLTS  133 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g-~i~v~gg----~~~ynp~~~~~W--~~~~  133 (392)
                      ...+|+.....     ..+..+|+.+++....-.....  ...++.. +| .+|+.+.    ++++|+. +++.  ..+.
T Consensus         9 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~   80 (331)
T 3u4y_A            9 SNFGIVVEQHL-----RRISFFSTDTLEILNQITLGYD--FVDTAITSDCSNVVVTSDFCQTLVQIETQ-LEPPKVVAIQ   80 (331)
T ss_dssp             CCEEEEEEGGG-----TEEEEEETTTCCEEEEEECCCC--EEEEEECSSSCEEEEEESTTCEEEEEECS-SSSCEEEEEE
T ss_pred             CCEEEEEecCC-----CeEEEEeCcccceeeeEEccCC--cceEEEcCCCCEEEEEeCCCCeEEEEECC-CCceeEEecc
Confidence            45666665433     4688899988877543222211  1133332 44 5777654    4788987 4543  1221


Q ss_pred             CCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCC
Q 016239          134 PLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGY  213 (392)
Q Consensus       134 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~  213 (392)
                      ....+.  ++++..               .++..+| .+...        .....+.+||..+++-...-+  .. ..  
T Consensus        81 ~~~~~~--~~~~~s---------------~dg~~l~-~~~~~--------~~~~~i~v~d~~~~~~~~~~~--~~-~~--  129 (331)
T 3u4y_A           81 EGQSSM--ADVDIT---------------PDDQFAV-TVTGL--------NHPFNMQSYSFLKNKFISTIP--IP-YD--  129 (331)
T ss_dssp             ECSSCC--CCEEEC---------------TTSSEEE-ECCCS--------SSSCEEEEEETTTTEEEEEEE--CC-TT--
T ss_pred             cCCCCc--cceEEC---------------CCCCEEE-EecCC--------CCcccEEEEECCCCCeEEEEE--CC-CC--
Confidence            111111  112221               1145566 43220        112268899988776433211  11 11  


Q ss_pred             CccceeeEEE-CC-EEEEEeecccE-EEEEECCC
Q 016239          214 SSQYLSSALF-RG-RFYVFGIYSFS-VSSFDLKK  244 (392)
Q Consensus       214 ~~~~~~~~~~-~g-~ly~~gg~~~~-i~~yd~~~  244 (392)
                         ....+.. +| .+|+.+...+. +..||...
T Consensus       130 ---~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A          130 ---AVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             ---EEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             ---ccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence               1223322 45 48887766566 88888754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.74  E-value=2.5  Score=38.87  Aligned_cols=180  Identities=9%  Similarity=-0.078  Sum_probs=90.9

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cce-EEeec---C---cceEecCCcCceeecCCCCcCccCceEEEEEc
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGF-FFTTT---P---RFGFSRILNTSWHLTSPLRFSRINPLVGVFYD  149 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~-i~v~g---g---~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~  149 (392)
                      ..++.+|..+++...+.....  ...+++.. +|. |++.+   |   .+++|.. +++...+.....   ......+  
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~~l~~~~~---~~~~~~~--  274 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQVTDGRS---NNTEPTW--  274 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEECCCCSS---CEEEEEE--
T ss_pred             cEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEEeCcCCCC---cccceEE--
Confidence            467888988877665543322  11223333 443 44332   1   4778987 565554433221   1111222  


Q ss_pred             CCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEE
Q 016239          150 HDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRF  227 (392)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~l  227 (392)
                                  .+ +++.+++++..        .....++.+|..++.-+.+.....   .      ...+.+  +|+.
T Consensus       275 ------------sp-dg~~l~~~s~~--------~g~~~i~~~d~~~~~~~~l~~~~~---~------~~~~~~spdG~~  324 (415)
T 2hqs_A          275 ------------FP-DSQNLAFTSDQ--------AGRPQVYKVNINGGAPQRITWEGS---Q------NQDADVSSDGKF  324 (415)
T ss_dssp             ------------CT-TSSEEEEEECT--------TSSCEEEEEETTSSCCEECCCSSS---E------EEEEEECTTSSE
T ss_pred             ------------CC-CCCEEEEEECC--------CCCcEEEEEECCCCCEEEEecCCC---c------ccCeEECCCCCE
Confidence                        12 44444443320        112368888988776444432111   0      222222  5654


Q ss_pred             EEEeec---ccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          228 YVFGIY---SFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       228 y~~gg~---~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      .++++.   ...|..+|+.+.+...+....   ........-+|+.++++.....   ...+|.+|..+..-..+..
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETT---EEEEEEEETTSCCEEECCC
T ss_pred             EEEEECcCCceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECCCCcEEEeeC
Confidence            444443   258999999988876553321   1122223347777666654322   4578888887766555544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.71  E-value=0.58  Score=41.88  Aligned_cols=114  Identities=12%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      +++.++.|+.+           .++.+||..++.++.+..+... ...     ...+.+  ++.+++.|+.++.|..+|+
T Consensus        72 ~g~~l~s~s~D-----------~~v~iw~~~~~~~~~~~~~~~h-~~~-----v~~v~~sp~~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           72 CGNYLASASFD-----------ATTCIWKKNQDDFECVTTLEGH-ENE-----VKSVAWAPSGNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             TSSEEEEEETT-----------SCEEEEEECCC-EEEEEEECCC-SSC-----EEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEECC-----------CcEEEEEccCCCeEEEEEccCC-CCC-----ceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence            55666666642           1477777777766544332221 111     223333  5788888888899999998


Q ss_pred             CCCc-eeecccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          243 KKHV-WSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       243 ~~~~-W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      .++. +..+............+. ..++++++.|+.+.    .+.+|  |..+..|..+..
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~----~i~~w--~~~~~~~~~~~~  189 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD----TVKLY--REEEDDWVCCAT  189 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS----CEEEE--EEETTEEEEEEE
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC----cEEEE--EecCCCEEEEEE
Confidence            7653 333322222111112222 23677777776443    67788  655666665443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=94.68  E-value=1.4  Score=40.26  Aligned_cols=103  Identities=18%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++++++.|+.+           ..+.+||..+++-...-.  .. ...     ...+..++.+++.|+..+.|..||+..
T Consensus       145 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~--~~-~~~-----v~~~~~~~~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          145 DGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA--GH-QAR-----VGCLSWNRHVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC-SSC-----EEEEEEETTEEEEEETTSEEEEEETTS
T ss_pred             CCCEEEEECCC-----------CeEEEEECcCCeEEEEec--CC-CCc-----eEEEEECCCEEEEEcCCCCEEEEeccc
Confidence            55666666541           158888887765322211  11 111     344555788888899899999999974


Q ss_pred             CceeecccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          245 HVWSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ..-... ...........+. ..++.+++.|+.++    .+.+|  |..+
T Consensus       206 ~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~----~v~iw--d~~~  248 (401)
T 4aez_A          206 ANHQIG-TLQGHSSEVCGLAWRSDGLQLASGGNDN----VVQIW--DARS  248 (401)
T ss_dssp             SSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS----CEEEE--ETTC
T ss_pred             Ccceee-EEcCCCCCeeEEEEcCCCCEEEEEeCCC----eEEEc--cCCC
Confidence            331111 1111111112222 22677777776543    57777  6554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.63  E-value=0.94  Score=45.60  Aligned_cols=65  Identities=9%  Similarity=0.051  Sum_probs=35.7

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee--CCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++.+++.++..+.|..||..+.+-...................  ++.++++|+.++    .+.+|  |..+.
T Consensus       152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~~~--d~~~~  218 (814)
T 3mkq_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIW--DYQTK  218 (814)
T ss_dssp             EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS----EEEEE--ETTTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC----EEEEE--ECCCC
Confidence            4678888888899999998765432221111101111111222  677777775432    56777  55443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.62  E-value=0.84  Score=39.85  Aligned_cols=107  Identities=11%  Similarity=0.021  Sum_probs=61.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~~  243 (392)
                      ++.+|++...           ...+.+||+.++.-+... .+..  .      .+.+. -+|.+|+..  ...|..||+.
T Consensus        24 ~~~l~~~d~~-----------~~~i~~~d~~~~~~~~~~-~~~~--~------~~i~~~~dG~l~v~~--~~~l~~~d~~   81 (297)
T 3g4e_A           24 SNSLLFVDIP-----------AKKVCRWDSFTKQVQRVT-MDAP--V------SSVALRQSGGYVATI--GTKFCALNWK   81 (297)
T ss_dssp             TTEEEEEETT-----------TTEEEEEETTTCCEEEEE-CSSC--E------EEEEEBTTSSEEEEE--TTEEEEEETT
T ss_pred             CCEEEEEECC-----------CCEEEEEECCCCcEEEEe-CCCc--e------EEEEECCCCCEEEEE--CCeEEEEECC
Confidence            5788887542           226889999887654332 1111  1      22222 267766654  4689999999


Q ss_pred             CCceeecccCCC---CcccceeEEeeCCeEEEEEeecCC-----CCCceeEEEeecCc
Q 016239          244 KHVWSEVQTLRP---PGVMFSFLIASPNMLVLAGMCNAP-----RGPSFNLWKVDELS  293 (392)
Q Consensus       244 ~~~W~~i~~~~~---~~~~~~~~~~~~g~l~v~gg~~~~-----~~~~~~v~~~d~~~  293 (392)
                      +++++.+.....   ........+.-+|+||+.......     ......+|++|+..
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence            998887654332   111222334447898875432211     12356899998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.58  E-value=0.013  Score=57.25  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=31.7

Q ss_pred             cCCcHHHHHHHHhhC-ChhhHHHhhccchhhhhhh
Q 016239           11 TTLSTDITERILSLL-PIPTLIRASSVCKSWRSII   44 (392)
Q Consensus        11 ~~Lp~dl~~~iL~rL-P~~~l~~~~~v~k~W~~l~   44 (392)
                      ..||+|++.+||++| |.+++.++..|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            479999999999999 8999999999999998873

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.52  E-value=1.3  Score=37.63  Aligned_cols=102  Identities=10%  Similarity=-0.037  Sum_probs=54.4

Q ss_pred             EEEEEeCCC-CCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeec----ccEEEEEECCCCceeecccCCCCccccee
Q 016239          188 AVEIYDPHS-DSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIY----SFSVSSFDLKKHVWSEVQTLRPPGVMFSF  262 (392)
Q Consensus       188 ~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~i~~yd~~~~~W~~i~~~~~~~~~~~~  262 (392)
                      .+.++|..+ +....+...+......     .....-+|+.+++++.    ...|+.+|..+.+-..+.....   ....
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~  134 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNN-----DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP---SYWH  134 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCS-----CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS---EEEE
T ss_pred             eEEEEeCCCCCCceEecccccccccc-----ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC---ccce
Confidence            688999988 7666554322110111     1111225655555542    3588999987776554433221   1111


Q ss_pred             EEeeCCeE-EEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          263 LIASPNML-VLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       263 ~~~~~g~l-~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      ....+++. ++.+....    ...+|.+|..+.....+..
T Consensus       135 ~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             EECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCC
T ss_pred             EECCCCCEEEEEECCCC----ceEEEEEECCCCcceEccc
Confidence            22235654 43444332    5789998887766655544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.51  E-value=1.2  Score=39.71  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ++.+++.|+.++.|..||..++.|..+............+ ...+|++++.|+.++    .+.+|..
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~----~v~iW~~  223 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR----TVRIWRQ  223 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC----eEEEecc
Confidence            5778888888889999999888886554433311111222 233677777776543    6888854

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.42  E-value=2.5  Score=37.35  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=43.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe-eC--CeEEEEEeecCCCCCceeEEEeecC----ccce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SP--NMLVLAGMCNAPRGPSFNLWKVDEL----SMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~--g~l~v~gg~~~~~~~~~~v~~~d~~----~~~W  296 (392)
                      ++.+++.|+.++.|..+|..++.|..+..+.........+.. .+  +.+++.|+.+.    .+.+|.+...    ...|
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~----~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS----TVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS----CEEEEEEEEECTTSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC----eEEEEEecCCCcccccee
Confidence            577888888889999999888777665444331111111222 22  44555555433    6889966432    2346


Q ss_pred             EecccCC
Q 016239          297 SEIAIMP  303 (392)
Q Consensus       297 ~~~~~~p  303 (392)
                      ..+..++
T Consensus       240 ~~~~~~~  246 (330)
T 2hes_X          240 VCEAILP  246 (330)
T ss_dssp             EEEEECC
T ss_pred             EEeeecc
Confidence            6555443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.40  E-value=2.3  Score=39.04  Aligned_cols=131  Identities=9%  Similarity=0.025  Sum_probs=65.7

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcc-eEEee-cceEEeecC----cceEecCCcCceeecCCCCcCccCceEEEEEcCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGS-CFIGA-NGFFFTTTP----RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHD  151 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~  151 (392)
                      ..+.++|..+++...+-.+..+.... +++.. +|..+++|+    +.+||.. +++-.  ..+............    
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-~~~~~--~~~~~h~~~v~~~s~----  197 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRL--RNMTSHSARVGSLSW----  197 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEE--EEECCCSSCEEEEEE----
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-CCcEE--EEEeCCCCceEEEee----
Confidence            45788898887765543333332222 23322 566666654    3678877 44322  112111112222233    


Q ss_pred             CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE--ECCEEEE
Q 016239          152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL--FRGRFYV  229 (392)
Q Consensus       152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~g~ly~  229 (392)
                                   ++.+++.|+.+           ..+..+|......... .+... ...     .....  -++...+
T Consensus       198 -------------~~~~l~sgs~d-----------~~i~~~d~~~~~~~~~-~~~~h-~~~-----~~~~~~~~~g~~l~  246 (420)
T 4gga_A          198 -------------NSYILSSGSRS-----------GHIHHHDVRVAEHHVA-TLSGH-SQE-----VCGLRWAPDGRHLA  246 (420)
T ss_dssp             -------------ETTEEEEEETT-----------SEEEEEETTSSSCEEE-EEECC-SSC-----EEEEEECTTSSEEE
T ss_pred             -------------CCCEEEEEeCC-----------CceeEeeecccceeeE-Eeccc-ccc-----eeeeeecCCCCeee
Confidence                         55666666541           2566777654432211 11110 100     12222  2567778


Q ss_pred             EeecccEEEEEECCCCc
Q 016239          230 FGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       230 ~gg~~~~i~~yd~~~~~  246 (392)
                      .++.++.+..+|..+.+
T Consensus       247 s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          247 SGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             EEETTSCEEEEESSCCS
T ss_pred             eeeccccceEEeecccc
Confidence            88888889999887653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=94.26  E-value=2.7  Score=37.97  Aligned_cols=60  Identities=12%  Similarity=0.105  Sum_probs=34.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ++ +++.++..+.|..||+.+.+-.......... ........+++++++++.++    .+.+|.+
T Consensus       300 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg----~i~i~~~  359 (425)
T 1r5m_A          300 DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-IFAGRISQDGQKYAVAFMDG----QVNVYDL  359 (425)
T ss_dssp             TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-EEEEEECTTSSEEEEEETTS----CEEEEEC
T ss_pred             CC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-EEEEEEcCCCCEEEEEECCC----eEEEEEC
Confidence            45 7777888889999999876533322211111 11112233677777776433    6777744

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.20  E-value=1.1  Score=39.42  Aligned_cols=75  Identities=11%  Similarity=0.054  Sum_probs=43.2

Q ss_pred             EEEEEeecccEEEEEECCC---CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          226 RFYVFGIYSFSVSSFDLKK---HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       226 ~ly~~gg~~~~i~~yd~~~---~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      .+.+.|+.++.|..+|..+   +.|...................++++++.++.++    .+.+|..+.. ..|..+..+
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~----~v~lw~~~~~-g~~~~~~~~  303 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN----KVTLWKESVD-GQWVCISDV  303 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS----CEEEEEECTT-SCEEEEEEC
T ss_pred             ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC----eEEEEEECCC-CcEEEeeec
Confidence            6777888889999999876   3333210000011111212233677777776544    6899966543 579988887


Q ss_pred             CHH
Q 016239          303 PHD  305 (392)
Q Consensus       303 p~~  305 (392)
                      ...
T Consensus       304 ~~~  306 (316)
T 3bg1_A          304 NKG  306 (316)
T ss_dssp             C--
T ss_pred             cCC
Confidence            754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.13  E-value=3.3  Score=37.60  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=50.8

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecc-cCCCCcccceeEE
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQ-TLRPPGVMFSFLI  264 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~-~~~~~~~~~~~~~  264 (392)
                      .+.+||..+++....-..... ...     ...+.+  ++.+++.|+.++.|..||+.+.+-...- .............
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~-~~~-----v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVH-PDT-----IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTC-CSC-----EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             EEEEEECCCCCccEEEecCCC-CCc-----eEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence            588899887654322100110 111     233333  6778888888899999999887543321 1111111222233


Q ss_pred             eeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          265 ASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ..++++++.|.... ....+.+|  |..+
T Consensus       229 ~~~~~~l~~g~~~~-~d~~i~iw--d~~~  254 (402)
T 2aq5_A          229 VSEGKILTTGFSRM-SERQVALW--DTKH  254 (402)
T ss_dssp             CSTTEEEEEEECTT-CCEEEEEE--ETTB
T ss_pred             cCCCcEEEEeccCC-CCceEEEE--cCcc
Confidence            44788777773211 11156666  6554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.12  E-value=4.7  Score=39.41  Aligned_cols=140  Identities=9%  Similarity=-0.068  Sum_probs=75.6

Q ss_pred             eEEEEEeCC-CC---CeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeeccc--EEEEEECCCCceeecccCCCCc--
Q 016239          187 LAVEIYDPH-SD---SWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYSF--SVSSFDLKKHVWSEVQTLRPPG--  257 (392)
Q Consensus       187 ~~~~~yd~~-~~---~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~--~i~~yd~~~~~W~~i~~~~~~~--  257 (392)
                      .+++++|.. ++   ..+.+..-..  ..     ....+.. +|++|+.+...+  .|+.+|+.+.++..+.......  
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~--~~-----~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  289 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPE--EA-----IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG  289 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETT--BC-----EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCC--ce-----EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence            478999988 56   3333321101  11     1222222 678887766554  8999999888887764422110  


Q ss_pred             --c--cceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEE-EEeCCEE
Q 016239          258 --V--MFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKC-VGLGNLI  331 (392)
Q Consensus       258 --~--~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~i  331 (392)
                        .  ....+.. -++++++.+..     ....+|.+|..+...+.+..-...               ...+ ...++.+
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~d~~~~~~~~l~~~~~~---------------~~~~~s~~~~~~  349 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK-----GAAVLGILDPESGELVDAAGPWTE---------------WAATLTVSGTRA  349 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS-----SSCEEEEEETTTTEEEECCSSCCE---------------EEEEEEEETTEE
T ss_pred             ccccccCceEeEeCCCEEEEEEEc-----CccEEEEEECCCCcEEEecCCCCe---------------EEEEEecCCCEE
Confidence              0  0112233 37888776643     267899999877766555331111               1233 4567777


Q ss_pred             EEEeccccCCCCeEEEEeecCCCc
Q 016239          332 YVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       332 ~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      ++..+...  ....++.+|..+++
T Consensus       350 ~~~~~~~~--~~~~i~~~d~~~g~  371 (662)
T 3azo_A          350 VGVAASPR--TAYEVVELDTVTGR  371 (662)
T ss_dssp             EEEEEETT--EEEEEEEEETTTCC
T ss_pred             EEEEcCCC--CCCEEEEEECCCCc
Confidence            76654322  22334445666555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.11  E-value=0.54  Score=41.60  Aligned_cols=117  Identities=8%  Similarity=0.017  Sum_probs=66.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecc----cEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYS----FSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~----~~i~~  239 (392)
                      ++++|+.+..           ...+.+||+.+++.+.+...+.. .      ..+.+. -+|.+|+.+...    +.|..
T Consensus        55 ~g~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~-~------~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           55 QGQLFLLDVF-----------EGNIFKINPETKEIKRPFVSHKA-N------PAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             TSCEEEEETT-----------TCEEEEECTTTCCEEEEEECSSS-S------EEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             CCCEEEEECC-----------CCEEEEEeCCCCcEEEEeeCCCC-C------cceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            6678887643           12688999988877654311111 1      122332 267888876544    58999


Q ss_pred             EECCCCceeec-ccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239          240 FDLKKHVWSEV-QTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       240 yd~~~~~W~~i-~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      ||+.+++...+ ........-....+.-+|+||+.............||++|+.+.+...+
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence            99988876533 2111111112222334788888653211111246899999877665543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.10  E-value=2.6  Score=36.46  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=39.9

Q ss_pred             CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEEC----CEEEEEeecccEEEEEE
Q 016239          166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFR----GRFYVFGIYSFSVSSFD  241 (392)
Q Consensus       166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----g~ly~~gg~~~~i~~yd  241 (392)
                      +.+++.|+.+           .++.++|..++.|..+..+... ...     ...+.+.    +.+++.|+.++.|..||
T Consensus        67 g~~l~s~s~D-----------~~v~iWd~~~~~~~~~~~~~~h-~~~-----v~~v~~~p~~~g~~l~s~s~d~~v~~wd  129 (297)
T 2pm7_B           67 GTILASCSYD-----------GKVMIWKEENGRWSQIAVHAVH-SAS-----VNSVQWAPHEYGPMLLVASSDGKVSVVE  129 (297)
T ss_dssp             CSEEEEEETT-----------TEEEEEEBSSSCBCCCEEECCC-SSC-----EEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEcCC-----------CEEEEEEcCCCceEEEEEeecC-CCc-----eeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence            5677776652           2688999988877655432211 111     2333332    56778888889999999


Q ss_pred             CCCC
Q 016239          242 LKKH  245 (392)
Q Consensus       242 ~~~~  245 (392)
                      +.+.
T Consensus       130 ~~~~  133 (297)
T 2pm7_B          130 FKEN  133 (297)
T ss_dssp             BCSS
T ss_pred             ecCC
Confidence            8765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=93.88  E-value=3.5  Score=37.03  Aligned_cols=196  Identities=7%  Similarity=-0.080  Sum_probs=102.2

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEe--ecceEEeecC----cceEecCCcCceeecC--CCCcCccCceEEEEEc
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIG--ANGFFFTTTP----RFGFSRILNTSWHLTS--PLRFSRINPLVGVFYD  149 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~g~i~v~gg----~~~ynp~~~~~W~~~~--~~~~~r~~~~~~~~~~  149 (392)
                      ..+..+++.......+..  ......+++.  .++.||+..-    .+++++. +...+.+.  .+..+   .++++-  
T Consensus        53 ~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~~~p---~glavd--  124 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESP---GGLAVD--  124 (349)
T ss_dssp             SCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCC---CEEEEE--
T ss_pred             cceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecC-CCCceEEEeCCCCCc---cEEEEe--
Confidence            446777877666544322  1112234443  3688988742    3677776 44333321  11111   222221  


Q ss_pred             CCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE--CC
Q 016239          150 HDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF--RG  225 (392)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~--~g  225 (392)
                      .             .++.||+.-..           ...+++++.....-+.+.  .+..+         ...++.  +|
T Consensus       125 ~-------------~~g~ly~~d~~-----------~~~I~~~~~dG~~~~~l~~~~l~~P---------~~iavdp~~g  171 (349)
T 3v64_C          125 W-------------VHDKLYWTDSG-----------TSRIEVANLDGAHRKVLLWQSLEKP---------RAIALHPMEG  171 (349)
T ss_dssp             T-------------TTTEEEEEETT-----------TTEEEEEETTSCSCEEEECTTCSCE---------EEEEEETTTT
T ss_pred             c-------------CCCeEEEEcCC-----------CCeEEEEcCCCCceEEEEeCCCCCc---------ceEEEecCcC
Confidence            1             16788887432           226888887654433321  11111         334443  68


Q ss_pred             EEEEEeecc-cEEEEEECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          226 RFYVFGIYS-FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       226 ~ly~~gg~~-~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      .||+..... ..|+++|+....-+.+.....  .....++.  .+++||+....      ...|+++|.+...=+.+...
T Consensus       172 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~--~~PnGla~d~~~~~lY~aD~~------~~~I~~~~~dG~~~~~~~~~  243 (349)
T 3v64_C          172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHL--FWPNGLTIDYAGRRMYWVDAK------HHVIERANLDGSHRKAVISQ  243 (349)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEESCCSSC--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS
T ss_pred             eEEEeccCCCCEEEEEeCCCCCcEEEEECCC--CCcceEEEeCCCCEEEEEECC------CCEEEEEeCCCCceEEEEeC
Confidence            999997555 789999987543333322111  11122333  47899998632      34566777665332222221


Q ss_pred             CHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          303 PHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       303 p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                      ..              ....++++.++.||+...
T Consensus       244 ~~--------------~~P~giav~~~~ly~td~  263 (349)
T 3v64_C          244 GL--------------PHPFAITVFEDSLYWTDW  263 (349)
T ss_dssp             SC--------------SSEEEEEEETTEEEEEET
T ss_pred             CC--------------CCceEEEEECCEEEEecC
Confidence            10              125677778999999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=93.81  E-value=3  Score=36.54  Aligned_cols=64  Identities=9%  Similarity=0.028  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cc-eEEeecC----cceEecCCcCce
Q 016239           60 SPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NG-FFFTTTP----RFGFSRILNTSW  129 (392)
Q Consensus        60 ~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g-~i~v~gg----~~~ynp~~~~~W  129 (392)
                      ..++.+|+.++.+     ..+..+|+.+++....-..+.......++.. +| .+|+.+.    ++++|+. +++.
T Consensus         8 ~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~   77 (349)
T 1jmx_B            8 KAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKN   77 (349)
T ss_dssp             CTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEE
T ss_pred             cCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcE
Confidence            4456677765533     5688999988765432222210012233333 44 5777643    4788987 5543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.78  E-value=2.8  Score=36.15  Aligned_cols=139  Identities=9%  Similarity=0.007  Sum_probs=70.3

Q ss_pred             EEEEEeCCCC--CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeec-ccEEEEEECCCC-ceeecccCC-CC--cccc
Q 016239          188 AVEIYDPHSD--SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIY-SFSVSSFDLKKH-VWSEVQTLR-PP--GVMF  260 (392)
Q Consensus       188 ~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~-~~~i~~yd~~~~-~W~~i~~~~-~~--~~~~  260 (392)
                      .+..||+ ++  .|+.-.+....  .     ......-+|.+++.... .+.++.+|+.-+ .|+.-.... ..  ....
T Consensus        57 ~V~~~d~-~G~~~W~~~~~~~~~--~-----~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~  128 (276)
T 3no2_A           57 GAKMITR-DGRELWNIAAPAGCE--M-----QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFR  128 (276)
T ss_dssp             EEEEECT-TSCEEEEEECCTTCE--E-----EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCS
T ss_pred             CEEEECC-CCCEEEEEcCCCCcc--c-----cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccccc
Confidence            5888888 44  37654321111  0     11223347777777654 678999998544 343321100 00  0111


Q ss_pred             eeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc-ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecccc
Q 016239          261 SFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM-EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYH  339 (392)
Q Consensus       261 ~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~-~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~  339 (392)
                      ......+|.+++....      ...|..||++.+ .|+.-..  ..              ........++.+++.+... 
T Consensus       129 ~v~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~--~~--------------~~~~~~~~~g~~~v~~~~~-  185 (276)
T 3no2_A          129 QINKNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS--GT--------------PFSSAFLDNGDCLVACGDA-  185 (276)
T ss_dssp             CCEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS--SC--------------CCEEEECTTSCEEEECBTT-
T ss_pred             CceECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC--CC--------------ccceeEcCCCCEEEEeCCC-
Confidence            1223457777766532      234566677643 3664322  11              1223445567788876521 


Q ss_pred             CCCCeEEEEeecCCCccceeeeec
Q 016239          340 KKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       340 ~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                          -.++.+|+++++  ..|+.-
T Consensus       186 ----~~v~~~d~~tG~--~~w~~~  203 (276)
T 3no2_A          186 ----HCFVQLNLESNR--IVRRVN  203 (276)
T ss_dssp             ----SEEEEECTTTCC--EEEEEE
T ss_pred             ----CeEEEEeCcCCc--EEEEec
Confidence                135667888766  457763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.74  E-value=3.4  Score=36.54  Aligned_cols=91  Identities=12%  Similarity=0.169  Sum_probs=49.8

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeE-E
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFL-I  264 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~-~  264 (392)
                      .+.+||..++.-...  +... ...     ...+.+  ++.+++.|+.++.|..||+.+.+-...  ..........+ .
T Consensus       165 ~i~~wd~~~~~~~~~--~~~h-~~~-----v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~--~~~h~~~v~~v~~  234 (340)
T 1got_B          165 TCALWDIETGQQTTT--FTGH-TGD-----VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--FTGHESDINAICF  234 (340)
T ss_dssp             CEEEEETTTTEEEEE--ECCC-SSC-----EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--ECCCSSCEEEEEE
T ss_pred             cEEEEECCCCcEEEE--EcCC-CCc-----eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE--EcCCcCCEEEEEE
Confidence            588888877653221  1111 110     222222  577888899889999999987643221  11111111122 2


Q ss_pred             eeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          265 ASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       265 ~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ..++++++.|+.++    .+.+|  |..+.
T Consensus       235 ~p~~~~l~s~s~d~----~v~iw--d~~~~  258 (340)
T 1got_B          235 FPNGNAFATGSDDA----TCRLF--DLRAD  258 (340)
T ss_dssp             CTTSSEEEEEETTS----CEEEE--ETTTT
T ss_pred             cCCCCEEEEEcCCC----cEEEE--ECCCC
Confidence            33777777776543    68888  65443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=93.65  E-value=3.2  Score=35.90  Aligned_cols=185  Identities=8%  Similarity=-0.083  Sum_probs=88.0

Q ss_pred             CceeeeeCCCCceeeCCCCC---CCCCcceEEee-c-ceEEeec---CcceEecCCcCceeec-CCCCc--CccCceEEE
Q 016239           78 NQSFAFDPASNSWFHLPPAQ---EPRAGSCFIGA-N-GFFFTTT---PRFGFSRILNTSWHLT-SPLRF--SRINPLVGV  146 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~-~-g~i~v~g---g~~~ynp~~~~~W~~~-~~~~~--~r~~~~~~~  146 (392)
                      ..+..||+.++++..+....   ......+++.. + |.+|+.+   ++++||+.  ++...+ .....  +........
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~  123 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEE
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC--CCEEEEEeccCCCccccCCcCEE
Confidence            46888998888876543210   00112234433 5 7888874   46888886  444433 22111  111111222


Q ss_pred             EEcCCCCcccccCCcccCCCeEEEEeceeecC--cc--cccccceEEEEEeCCCCCeecCCC-CCCCCCCCCCccceeeE
Q 016239          147 FYDHDRGHCDLASGFACNLPKFIVVGGVRFIG--GL--VDIEDRLAVEIYDPHSDSWELCPP-LPADFRSGYSSQYLSSA  221 (392)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~--~~--~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~  221 (392)
                      + +.              ++++|+........  ..  ........+..||+. ++.+.+.. ...+         ...+
T Consensus       124 ~-d~--------------~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---------~~i~  178 (314)
T 1pjx_A          124 F-DY--------------EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---------NGIA  178 (314)
T ss_dssp             E-CT--------------TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---------EEEE
T ss_pred             E-CC--------------CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---------ceEE
Confidence            2 22              66788765321000  00  000112468888876 55443321 1111         2333


Q ss_pred             EE-----CC-EEEEEeecccEEEEEECC-CCceee---cccCCCCc-ccceeEE-eeCCeEEEEEeecCCCCCceeEEEe
Q 016239          222 LF-----RG-RFYVFGIYSFSVSSFDLK-KHVWSE---VQTLRPPG-VMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       222 ~~-----~g-~ly~~gg~~~~i~~yd~~-~~~W~~---i~~~~~~~-~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ..     ++ .+|+.....+.|.+||+. +++...   +...+... .....++ ..+|+||+....      ...|.++
T Consensus       179 ~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~------~~~i~~~  252 (314)
T 1pjx_A          179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVF  252 (314)
T ss_dssp             EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEE
T ss_pred             EecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC------CCEEEEE
Confidence            33     34 577776666789999976 444322   11111111 1112233 347888887532      2356667


Q ss_pred             ecCccc
Q 016239          290 DELSME  295 (392)
Q Consensus       290 d~~~~~  295 (392)
                      |+.+.+
T Consensus       253 d~~~g~  258 (314)
T 1pjx_A          253 GPDGGQ  258 (314)
T ss_dssp             CTTCBS
T ss_pred             cCCCCc
Confidence            887443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.64  E-value=4.3  Score=37.35  Aligned_cols=100  Identities=10%  Similarity=0.065  Sum_probs=50.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--C-CEEEEEeecccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--R-GRFYVFGIYSFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~-g~ly~~gg~~~~i~~yd  241 (392)
                      ++++++.|+.+           ..+.+||.....   +..+... ...     ...+.+  + ..+++.|+.++.|..||
T Consensus       220 ~~~~l~~g~~d-----------g~i~~wd~~~~~---~~~~~~h-~~~-----v~~v~~~p~~~~~~~s~s~d~~v~iwd  279 (435)
T 4e54_B          220 SSRMVVTGDNV-----------GNVILLNMDGKE---LWNLRMH-KKK-----VTHVALNPCCDWFLATASVDQTVKIWD  279 (435)
T ss_dssp             TTTEEEEECSS-----------SBEEEEESSSCB---CCCSBCC-SSC-----EEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred             CCCEEEEEeCC-----------CcEeeeccCcce---eEEEecc-cce-----EEeeeecCCCceEEEEecCcceeeEEe
Confidence            56777777652           257888875532   2221111 111     233333  2 34777788888899999


Q ss_pred             CCCCceeecc-cCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEE
Q 016239          242 LKKHVWSEVQ-TLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       242 ~~~~~W~~i~-~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      +.+.+-.... ...........+ ...+|..++.|+.++    .+.+|.
T Consensus       280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd  324 (435)
T 4e54_B          280 LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYS  324 (435)
T ss_dssp             TTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEE
T ss_pred             cccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEEE
Confidence            8765432211 111111111111 123677777776543    678883

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.63  E-value=6  Score=38.98  Aligned_cols=105  Identities=9%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             ceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecc-----cEEEEEECCCC-ceeecccCCCCc
Q 016239          186 RLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYS-----FSVSSFDLKKH-VWSEVQTLRPPG  257 (392)
Q Consensus       186 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~-----~~i~~yd~~~~-~W~~i~~~~~~~  257 (392)
                      ...+.++|..+++-..+...... ..     ....+.+  +|+..+++...     ..|..+|+.+. ....+.......
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~-~~-----~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~  307 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPK-EK-----FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH  307 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCT-TC-----EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred             eeEEEEEECCCCceEeeccCCCC-ce-----eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence            35788999988775544321111 11     1222333  56533333322     38999999887 666553221111


Q ss_pred             c---cceeEEee--CCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          258 V---MFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       258 ~---~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      .   .......-  +|++++.+..+    ....+|.+|..+...+.+.
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRRD----GWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECTT----SSCEEEEEETTSCEEEECC
T ss_pred             eECccCCceeecCCCCEEEEEEccC----CccEEEEEECCCCEEEecC
Confidence            0   11222344  78866555322    1578999987666666553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.54  E-value=0.86  Score=45.46  Aligned_cols=132  Identities=8%  Similarity=-0.098  Sum_probs=69.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCC--CCCCCCCCCCccceeeEE--ECCEEEEEeec-ccEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPP--LPADFRSGYSSQYLSSAL--FRGRFYVFGIY-SFSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~--~~g~ly~~gg~-~~~i~~  239 (392)
                      ++.||+.-..           ...+.++++....-+.+..  +..+         ...++  .+|.||+.... .+.|++
T Consensus       464 ~g~LY~tD~~-----------~~~I~v~d~dg~~~~~l~~~~~~~P---------~giavDp~~g~ly~td~~~~~~I~~  523 (699)
T 1n7d_A          464 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFREQGSKP---------RAIVVDPVHGFMYWTDWGTPAKIKK  523 (699)
T ss_dssp             SSBCEECCTT-----------TSCEEEEBSSSCCEEEECCCSSCCC---------CCEECCSSSSCCEECCCSSSCCEEB
T ss_pred             CCcEEEEecc-----------CCeEEEEecCCCceEEEEeCCCCCc---------ceEEEccCCCcEEEcccCCCCeEEE
Confidence            6788886321           2257888876554333322  1121         22222  26889988633 368999


Q ss_pred             EECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccC
Q 016239          240 FDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDD  317 (392)
Q Consensus       240 yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  317 (392)
                      +++....-+.+.....  .....+++  .+++||+.-..      ...|+++|.....-+.+...+..+           
T Consensus       524 ~~~dG~~~~~l~~~~l--~~PnGlavd~~~~~LY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~~-----------  584 (699)
T 1n7d_A          524 GGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRL-----------  584 (699)
T ss_dssp             CCSSSCCCCEESCSSC--SSCCCEEECTTTCCEEEEETT------TTEEEEECSSSSCCEEECCCSSSC-----------
T ss_pred             EeCCCCCeeEEEeCCC--CCccEEEEeccCCEEEEEecC------CCeEEEEccCCCceEEEEecCCcC-----------
Confidence            8886543333321111  11112333  36889987632      345667777654333333221110           


Q ss_pred             ccceeEEEEeCCEEEEEec
Q 016239          318 KFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       318 ~~~~~~~~~~~~~i~v~gg  336 (392)
                       ....++++.++.||+...
T Consensus       585 -~~P~glavd~~~lywtd~  602 (699)
T 1n7d_A          585 -AHPFSLAVFEDKVFWTDI  602 (699)
T ss_dssp             -SSCCCCEEETTEEEEECS
T ss_pred             -CCceEeEEECCEEEEEeC
Confidence             124566778889999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=93.51  E-value=4.5  Score=37.11  Aligned_cols=132  Identities=8%  Similarity=-0.111  Sum_probs=73.5

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE--CCEEEEEe-ecccEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF--RGRFYVFG-IYSFSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~--~g~ly~~g-g~~~~i~~  239 (392)
                      ++.||+.-..           ...++++++....-+.+.  .+..+         .+.++.  +|.||+.. |....|++
T Consensus       170 ~~~lY~~d~~-----------~~~I~~~~~~g~~~~~l~~~~~~~P---------~~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          170 HSNIYWTDSV-----------LGTVSVADTKGVKRKTLFRENGSKP---------RAIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             TTEEEEEETT-----------TTEEEEECTTTCSEEEEEECSSCCE---------EEEEEETTTTEEEEEECSSSCCEEE
T ss_pred             CCceEEEECC-----------CCeEEEEeCCCCceEEEEeCCCCCc---------ceEEEecccCeEEEEeCCCCCEEEE
Confidence            6789988432           226888888765544332  12111         333332  68999986 43468999


Q ss_pred             EECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccC
Q 016239          240 FDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDD  317 (392)
Q Consensus       240 yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  317 (392)
                      +++....=..+.....  ..-..++.  .+++||+....      ...|+++|.+...-+.+...+..+           
T Consensus       230 ~~~dG~~~~~~~~~~l--~~P~glavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~~~l-----------  290 (400)
T 3p5b_L          230 GGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSK------LHSISSIDVNGGNRKTILEDEKRL-----------  290 (400)
T ss_dssp             EETTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCCEEEEECSSTT-----------
T ss_pred             EeCCCCccEEEEECCC--CceEEEEEEeCCCEEEEEECC------CCEEEEEeCCCCccEEEEeCCCCC-----------
Confidence            9986543222211111  11122333  37899998532      346777777654433333221111           


Q ss_pred             ccceeEEEEeCCEEEEEec
Q 016239          318 KFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       318 ~~~~~~~~~~~~~i~v~gg  336 (392)
                       ...+++++.++.||+...
T Consensus       291 -~~P~gl~v~~~~lywtd~  308 (400)
T 3p5b_L          291 -AHPFSLAVFEDKVFWTDI  308 (400)
T ss_dssp             -SSEEEEEEETTEEEEEES
T ss_pred             -CCCEEEEEeCCEEEEecC
Confidence             135677889999999873

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.47  E-value=3.7  Score=41.19  Aligned_cols=141  Identities=9%  Similarity=0.002  Sum_probs=72.2

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeec--CcceEecCCcCceeecCCCCcCc-cCceEEEEEcCCCCc
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTT--PRFGFSRILNTSWHLTSPLRFSR-INPLVGVFYDHDRGH  154 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~g--g~~~ynp~~~~~W~~~~~~~~~r-~~~~~~~~~~~~~~~  154 (392)
                      ..+..||+.+.++... ....+..-..+...+|.|++..  |.++||+. +++.+......... .........+.    
T Consensus        82 ~Gl~~yd~~~~~f~~~-~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~d~----  155 (758)
T 3ott_A           82 NGILVYNYRADRYEQP-ETDFPTDVRTMALQGDTLWLGALNGLYTYQLQ-SRKLTSFDTRRNGLPNNTIYSIIRTK----  155 (758)
T ss_dssp             TEEEEEETTTTEECCC-SCCCCSCEEEEEEETTEEEEEETTEEEEEETT-TCCEEEECHHHHCCSCSCEEEEEECT----
T ss_pred             CCeEEEeCCCCEEECc-ccCCCceEEEEEecCCcEEEEcCCcceeEeCC-CCeEEEeccCCCCcCCCeEEEEEEcC----
Confidence            3478899998876541 1111111113334578888764  57899998 67776552211110 11112222222    


Q ss_pred             ccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CC-EEEEEee
Q 016239          155 CDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RG-RFYVFGI  232 (392)
Q Consensus       155 ~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g-~ly~~gg  232 (392)
                                ++.+++...             ..+..||+.+++.+.... +...... ...-.+.... ++ .|++ |.
T Consensus       156 ----------~g~lWigt~-------------~Gl~~~~~~~~~~~~~~~-~~~~~~~-~~~i~~i~~d~~~~~lWi-gt  209 (758)
T 3ott_A          156 ----------DNQIYVGTY-------------NGLCRYIPSNGKFEGIPL-PVHSSQS-NLFVNSLLEDTTRQCVWI-GT  209 (758)
T ss_dssp             ----------TCCEEEEET-------------TEEEEEETTTTEEEEECC-CCCTTCS-SCCEEEEEEETTTTEEEE-EE
T ss_pred             ----------CCCEEEEeC-------------CCHhhCccCCCceEEecC-CCccccc-cceeEEEEEECCCCEEEE-EE
Confidence                      667887421             147788888877765431 1110000 0000122222 23 4555 44


Q ss_pred             cccEEEEEECCCCceeecc
Q 016239          233 YSFSVSSFDLKKHVWSEVQ  251 (392)
Q Consensus       233 ~~~~i~~yd~~~~~W~~i~  251 (392)
                      . +.+..||+.++++....
T Consensus       210 ~-~Gl~~~~~~~~~~~~~~  227 (758)
T 3ott_A          210 E-GYLFQYFPSTGQIKQTE  227 (758)
T ss_dssp             E-EEEEEEETTTTEEEEEE
T ss_pred             C-CCCeEEcCCCCeEEecc
Confidence            3 46899999998887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.37  E-value=4.2  Score=36.41  Aligned_cols=169  Identities=7%  Similarity=-0.070  Sum_probs=80.4

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcc-eEEee--cceEEeecC----cceEecCCcCceeecCCCCcCccCceEEEEEcC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGS-CFIGA--NGFFFTTTP----RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDH  150 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~--~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~  150 (392)
                      ..+.+||..+.+.............. +++..  ++.+++.++    +.+||.. ++....+............+.+. .
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~-~  173 (383)
T 3ei3_B           96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-GSVIQVFAKTDSWDYWYCCVDVS-V  173 (383)
T ss_dssp             SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-SCEEEEEECCCCSSCCEEEEEEE-T
T ss_pred             CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CCceEEEeccCCCCCCeEEEEEC-C
Confidence            35778888876655432221122222 23332  345555543    3677876 45444333222111111222221 1


Q ss_pred             CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCE-E
Q 016239          151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGR-F  227 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~-l  227 (392)
                                    +++.++.|+.           ...+.+||.....-..+......         ...+.+  ++. +
T Consensus       174 --------------~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~  219 (383)
T 3ei3_B          174 --------------SRQMLATGDS-----------TGRLLLLGLDGHEIFKEKLHKAK---------VTHAEFNPRCDWL  219 (383)
T ss_dssp             --------------TTTEEEEEET-----------TSEEEEEETTSCEEEEEECSSSC---------EEEEEECSSCTTE
T ss_pred             --------------CCCEEEEECC-----------CCCEEEEECCCCEEEEeccCCCc---------EEEEEECCCCCCE
Confidence                          5566666654           12688888743332222211111         223333  344 7


Q ss_pred             EEEeecccEEEEEECCCC----ceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEE
Q 016239          228 YVFGIYSFSVSSFDLKKH----VWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       228 y~~gg~~~~i~~yd~~~~----~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      ++.|+.++.|..||+.+.    ......  ............. ++++++.++.++    .+.+|.
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd  279 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRN----EIRVYS  279 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSS----EEEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCC----cEEEEE
Confidence            888888899999999873    222211  1111111111223 677777776433    677773

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.36  E-value=3.7  Score=35.67  Aligned_cols=64  Identities=8%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCccc-ceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVM-FSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~-~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++.+.+.|+.++.|..+|..+.+-..  .+...... .......++.+++.|+.++    .+.+|  |..+.+
T Consensus       197 ~~~~l~s~s~D~~i~iWd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~Dg----~i~iW--d~~~~~  261 (304)
T 2ynn_A          197 DKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMSNVSFAVFHPTLPIIISGSEDG----TLKIW--NSSTYK  261 (304)
T ss_dssp             TCCEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECSSSSEEEEEETTS----CEEEE--ETTTCC
T ss_pred             CCCEEEEEcCCCeEEEEeCCCCccce--eeCCCCCCEEEEEECCCCCEEEEEcCCC----eEEEE--ECCCCc
Confidence            45677788888999999998764322  11111111 1112233667777776543    68888  665443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=93.29  E-value=1.2  Score=39.06  Aligned_cols=25  Identities=4%  Similarity=-0.081  Sum_probs=15.5

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCcee
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWF   91 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~   91 (392)
                      +..+|+....     ...+..+|+.+.+-.
T Consensus        45 g~~l~v~~~~-----~~~v~~~d~~~~~~~   69 (337)
T 1pby_B           45 GRIAYATVNK-----SESLVKIDLVTGETL   69 (337)
T ss_dssp             SSEEEEEETT-----TTEEEEEETTTCCEE
T ss_pred             CCEEEEEeCC-----CCeEEEEECCCCCeE
Confidence            3466665432     146888998877643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.24  E-value=4.9  Score=36.74  Aligned_cols=53  Identities=6%  Similarity=0.047  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCcee
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWS  248 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~  248 (392)
                      ++.+||..++.-...  +... ...     ...+..  ++.+++.|+.++.|..||..+.+..
T Consensus       215 ~i~~wd~~~~~~~~~--~~~h-~~~-----v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          215 TIKMWEVQTGYCVKT--FTGH-REW-----VRMVRPNQDGTLIASCSNDQTVRVWVVATKECK  269 (410)
T ss_dssp             EEEEEETTTCCEEEE--EECC-SSC-----EEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             eEEEEECCCCcEEEE--EeCC-Ccc-----EEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            688899877653211  1110 100     122222  5778888888899999999876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.17  E-value=4.1  Score=36.52  Aligned_cols=101  Identities=9%  Similarity=-0.165  Sum_probs=53.8

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEee----------------cccEEEEEECCCCceee
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGI----------------YSFSVSSFDLKKHVWSE  249 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg----------------~~~~i~~yd~~~~~W~~  249 (392)
                      ..+.++|..+++.+.+...+..         .....- +|+++++.+                ....|+.+|+.+++...
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~~---------~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  334 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMPPC---------SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK  334 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECCSE---------EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE
T ss_pred             ceEEEEECCCCCeEEeeeCCCC---------CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE
Confidence            3589999988876665433211         211222 677666543                12579999998887665


Q ss_pred             cccCCCCc---------ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239          250 VQTLRPPG---------VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       250 i~~~~~~~---------~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      +.......         .........+|+.+++.....   ....+|.+|..+..++++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~---~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE---GVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT---SSCEEEEEECCTTCC---
T ss_pred             ccCCCCccccccccccCCCCCceEccCCCeEEEEecCC---CCceEEEEEEcccccccc
Confidence            53322100         011112334565444443221   146799999888776654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.14  E-value=0.63  Score=43.15  Aligned_cols=107  Identities=9%  Similarity=0.034  Sum_probs=60.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      +..+++.|+.+           .++.+||..++.-...-..... ..    .-.+.+..  ++.+++.|+.++.|..+|+
T Consensus       131 ~~~~lasGs~d-----------g~i~lWd~~~~~~~~~~~~~gH-~~----~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          131 HPSTVAVGSKG-----------GDIMLWNFGIKDKPTFIKGIGA-GG----SITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             CTTCEEEEETT-----------SCEEEECSSCCSCCEEECCCSS-SC----CCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCEEEEEeCC-----------CEEEEEECCCCCceeEEEccCC-CC----CEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            56677777652           1588888876654332221111 11    01223332  5677778888899999999


Q ss_pred             CCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          243 KKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      .++....+............+ ...++++++.|+.++    .+.+|  |..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg----~i~~w--d~~~  240 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG----NVILL--NMDG  240 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS----BEEEE--ESSS
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC----cEeee--ccCc
Confidence            887766554332222222222 334777888776443    67777  5544

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=92.98  E-value=6  Score=37.04  Aligned_cols=103  Identities=11%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             ECCEEEEEeecccEEEEEECCCCceee--ccc-CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239          223 FRGRFYVFGIYSFSVSSFDLKKHVWSE--VQT-LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       223 ~~g~ly~~gg~~~~i~~yd~~~~~W~~--i~~-~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      .+|++|+|-|.  ..+++|...+.+..  |.. .+..+....++...++++|++-|        .++|+|+... ..+.+
T Consensus       268 ~~G~tYFFKg~--~yWR~~~~~~~~~p~~Is~~WpglP~~IDAAf~~~~~~yfFkG--------~~yw~f~~~~-g~~~~  336 (460)
T 1qhu_A          268 NHGATYVFSGS--HYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQD--------TKVYVFLTKG-GYTLV  336 (460)
T ss_dssp             TTCCEEEEETT--EEEECTTGGGCCCCEEGGGTCTTSCSSCSEEEEETTEEEEEET--------TEEEEEECSB-SCEEC
T ss_pred             CCCeEEEEeCC--EEEEEecCCCCcCccchhhhccCCCCCCcEEEEECCeEEEEeC--------CEEEEEeCCC-Cceec
Confidence            47899999873  67888876543322  211 11111223334556899999864        3688888653 24566


Q ss_pred             ccCCHHHHHhhcCCccc--CccceeEEEE-eCCEEEEEecc
Q 016239          300 AIMPHDFLYSLVDTEED--DKFASLKCVG-LGNLIYVFNEE  337 (392)
Q Consensus       300 ~~~p~~~~~~~~~~~~~--~~~~~~~~~~-~~~~i~v~gg~  337 (392)
                      ...|..+...+ +....  ...-..++.. ..+++|++-|.
T Consensus       337 ~GyPK~I~~~l-Glp~~~~~~~IDAA~~~~~~~ktyfFkG~  376 (460)
T 1qhu_A          337 NGYPKRLEKEL-GSPPVISLEAVDAAFVCPGSSRLHIMAGR  376 (460)
T ss_dssp             TTCCEEHHHHH-CCCSSCCCSCCCEEECCTTCCEEEEEETT
T ss_pred             CCCCeEHHHhc-cCCCccccCcccEEEEeCCCCEEEEEECC
Confidence            66666664333 43322  1112223322 46899999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.83  E-value=4.8  Score=36.46  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=19.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVW  247 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W  247 (392)
                      ++..++.|+.++.|..||+.+.+-
T Consensus       192 ~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          192 RGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCEEEEEcCCCcEEEeECCCCce
Confidence            577777888888999999987653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=92.79  E-value=4.6  Score=40.01  Aligned_cols=111  Identities=12%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             EEeecceEEeecC---cceEecCCcC--ceeecCCCCcC--------ccCceEEEEEcCCCCcccccCCcccCCCeEEEE
Q 016239          105 FIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFS--------RINPLVGVFYDHDRGHCDLASGFACNLPKFIVV  171 (392)
Q Consensus       105 ~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~  171 (392)
                      .++.+|.||+.+.   ++.+|.. ++  .|+.-...+..        ....+.++.                 +++||+.
T Consensus        73 P~v~~g~vyv~~~~~~v~AlD~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-----------------~~~v~v~  134 (677)
T 1kb0_A           73 PVVVDGIMYVSASWSVVHAIDTR-TGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-----------------KGKVYVG  134 (677)
T ss_dssp             CEEETTEEEEECGGGCEEEEETT-TTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-----------------TTEEEEE
T ss_pred             CEEECCEEEEECCCCeEEEEECC-CCcEEEEEcCCCCccccccccccCCCCCceEE-----------------CCEEEEE
Confidence            3456899998754   4788987 45  68764433211        111233444                 7888886


Q ss_pred             eceeecCcccccccceEEEEEeCCCCC--eecCCC-C-CCCCCCCCCccceeeEEECCEEEEEee-----cccEEEEEEC
Q 016239          172 GGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPP-L-PADFRSGYSSQYLSSALFRGRFYVFGI-----YSFSVSSFDL  242 (392)
Q Consensus       172 gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~-~~~~~~~~~~~~~~~~~~~g~ly~~gg-----~~~~i~~yd~  242 (392)
                      ...            ..+..+|..+++  |+.-.. - +.....     ..+.++.++.+|+..+     ..+.|.+||.
T Consensus       135 ~~d------------g~l~alD~~tG~~~W~~~~~~~~~~~~~~-----~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~  197 (677)
T 1kb0_A          135 AWD------------GRLIALDAATGKEVWHQNTFEGQKGSLTI-----TGAPRVFKGKVIIGNGGAEYGVRGYITAYDA  197 (677)
T ss_dssp             CTT------------SEEEEEETTTCCEEEEEETTTTCCSSCBC-----CSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred             cCC------------CEEEEEECCCCCEEeeecCCcCcCcCccc-----ccCcEEECCEEEEEecccccCCCCEEEEEEC
Confidence            432            158888887764  875432 1 111011     1455677899988754     2578999999


Q ss_pred             CCC--ceeec
Q 016239          243 KKH--VWSEV  250 (392)
Q Consensus       243 ~~~--~W~~i  250 (392)
                      .+.  .|+.-
T Consensus       198 ~tG~~~W~~~  207 (677)
T 1kb0_A          198 ETGERKWRWF  207 (677)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEec
Confidence            776  47654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=92.56  E-value=0.82  Score=41.09  Aligned_cols=135  Identities=12%  Similarity=0.095  Sum_probs=64.3

Q ss_pred             cceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCC
Q 016239          118 RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSD  197 (392)
Q Consensus       118 ~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~  197 (392)
                      +.+||.. ++.|+.+..+.........+.+ .+              ++++++.|+.+           ..+.+||..++
T Consensus        35 i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~-s~--------------~~~~l~s~s~d-----------~~v~vwd~~~~   87 (377)
T 3dwl_C           35 VELYEQD-GNGWKHARTFSDHDKIVTCVDW-AP--------------KSNRIVTCSQD-----------RNAYVYEKRPD   87 (377)
T ss_dssp             BCEEEEE-TTEEEECCCBCCCSSCEEEEEE-CT--------------TTCCEEEEETT-----------SSEEEC-----
T ss_pred             EEEEEcc-CCceEEEEEEecCCceEEEEEE-eC--------------CCCEEEEEeCC-----------CeEEEEEcCCC
Confidence            3678887 6777666655432222222222 11              45566666541           25888888777


Q ss_pred             C-eecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCc-eeecccCCC-CcccceeEE-eeCCeEE
Q 016239          198 S-WELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHV-WSEVQTLRP-PGVMFSFLI-ASPNMLV  271 (392)
Q Consensus       198 ~-W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~-W~~i~~~~~-~~~~~~~~~-~~~g~l~  271 (392)
                      . |.....+... ...     ...+.+  ++.+++.|+..+.|..||..+.+ |..+..... .......+. ..+++++
T Consensus        88 ~~~~~~~~~~~~-~~~-----v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           88 GTWKQTLVLLRL-NRA-----ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             -CCCCEEECCCC-SSC-----EEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CceeeeeEeccc-CCc-----eEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            6 5444322221 111     222222  57778888888899999998765 433332222 111112222 2366777


Q ss_pred             EEEeecCCCCCceeEEEe
Q 016239          272 LAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       272 v~gg~~~~~~~~~~v~~~  289 (392)
                      +.|+.++    .+.+|.+
T Consensus       162 ~~~~~d~----~i~iwd~  175 (377)
T 3dwl_C          162 AAGCADR----KAYVLSA  175 (377)
T ss_dssp             EEEESSS----CEEEEEE
T ss_pred             EEEeCCC----EEEEEEE
Confidence            7776443    5777754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.55  E-value=5.7  Score=35.74  Aligned_cols=62  Identities=6%  Similarity=-0.061  Sum_probs=34.2

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++.+++.++..+.|..||..+.+-...-...  ......+... ++ +++.++.++    .+.+|  |..+.
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~----~i~i~--d~~~~  320 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDG----SVRLW--SLKQN  320 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTS----EEEEE--ETTTT
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCC----cEEEE--ECCCC
Confidence            5677778888889999998876432221111  1112223333 55 555554332    56666  65544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=92.36  E-value=5.5  Score=35.09  Aligned_cols=189  Identities=11%  Similarity=0.029  Sum_probs=89.4

Q ss_pred             ceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeecC----cceEecCCcC--ceeecCCCC-----cCcc-CceEE
Q 016239           79 QSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTTP----RFGFSRILNT--SWHLTSPLR-----FSRI-NPLVG  145 (392)
Q Consensus        79 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~gg----~~~ynp~~~~--~W~~~~~~~-----~~r~-~~~~~  145 (392)
                      .+..+|+.+.+.........-.....++.. +|.+|+...    +.+||+. ++  .-..+....     .... ....+
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEE
Confidence            578889877665332110000112344444 777888753    3678876 33  122222111     1111 12222


Q ss_pred             EEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCC-------CCCCCCCCCccce
Q 016239          146 VFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPL-------PADFRSGYSSQYL  218 (392)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-------~~~~~~~~~~~~~  218 (392)
                      .+ +             .+++.+|+..+.          ....+.+||+....-..+...       +..+..     ..
T Consensus       149 a~-~-------------~~~g~lyv~d~~----------~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~-----p~  199 (329)
T 3fvz_A          149 AV-E-------------PSTGAVFVSDGY----------CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSV-----PH  199 (329)
T ss_dssp             EE-C-------------TTTCCEEEEECS----------SCCEEEEECTTSCEEEEECEECCSSSCCTTEESC-----EE
T ss_pred             EE-e-------------CCCCeEEEEeCC----------CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCC-----Cc
Confidence            22 1             116789998642          122688888644332333210       111011     13


Q ss_pred             eeEEE-C-CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCC-CCCceeEEEeecCccc
Q 016239          219 SSALF-R-GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAP-RGPSFNLWKVDELSME  295 (392)
Q Consensus       219 ~~~~~-~-g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~-~~~~~~v~~~d~~~~~  295 (392)
                      ..++. + +.||+.....+.|..||+.+.+....-..+........+....+.++...|.... ......++.+|..+.+
T Consensus       200 gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~  279 (329)
T 3fvz_A          200 SLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE  279 (329)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred             EEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence            33443 4 8999998888899999998666544322121111111223333566665542111 1113355555766555


Q ss_pred             eE
Q 016239          296 FS  297 (392)
Q Consensus       296 W~  297 (392)
                      ..
T Consensus       280 ~~  281 (329)
T 3fvz_A          280 II  281 (329)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.35  E-value=4.9  Score=34.55  Aligned_cols=23  Identities=17%  Similarity=0.060  Sum_probs=18.5

Q ss_pred             CCEEEEEeecccEEEEEECCCCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      ++...+.++.++.|..||..+.+
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBT
T ss_pred             CCCEEEEEecCcceeEEECCCCc
Confidence            56777788888899999997754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.35  E-value=5.8  Score=35.35  Aligned_cols=64  Identities=14%  Similarity=0.093  Sum_probs=38.2

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++.+++.|+.++.|..||+.+.+....-..... .........++.+++.|+.+.    .+.+|  |..+.
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~----~v~lw--d~~~~  272 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDA----TCRLY--DLRAD  272 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTS----CEEEE--ETTTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCC----eEEEE--ECCCC
Confidence            357888899899999999988764332111111 111111223677777776543    67888  65544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=92.31  E-value=5  Score=34.52  Aligned_cols=184  Identities=9%  Similarity=-0.022  Sum_probs=88.5

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec----CcceEecCCcCceeecCCCCcC-cc-CceEEEEEcC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT----PRFGFSRILNTSWHLTSPLRFS-RI-NPLVGVFYDH  150 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g----g~~~ynp~~~~~W~~~~~~~~~-r~-~~~~~~~~~~  150 (392)
                      ..++.||+.++ ...+....  ....+++.. +|.+|+..    ++.+||+. +++.+.+...... .. ......+ ++
T Consensus        50 ~~i~~~~~~~~-~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~i~~-d~  124 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMHPS--HHQNGHCLNKQGHLIACSHGLRRLERQREP-GGEWESIADSFEGKKLNSPNDVCL-AP  124 (296)
T ss_dssp             TEEEEEETTSC-EEEEESSC--SSEEEEEECTTCCEEEEETTTTEEEEECST-TCCEEEEECEETTEECCCCCCEEE-CT
T ss_pred             CEEEEEECCCC-eEEEECCC--CCcceeeECCCCcEEEEecCCCeEEEEcCC-CCcEEEEeeccCCCCCCCCCCEEE-CC
Confidence            46888999877 54443211  112244443 67777764    25889997 5666554322111 11 1111122 12


Q ss_pred             CCCcccccCCcccCCCeEEEE----eceeecCccc--ccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-
Q 016239          151 DRGHCDLASGFACNLPKFIVV----GGVRFIGGLV--DIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-  223 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~----gG~~~~~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-  223 (392)
                                    ++++|+.    |.........  .......++.+|+. ++-+.+....   ..      ...+.+ 
T Consensus       125 --------------~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~---~~------~~gi~~s  180 (296)
T 3e5z_A          125 --------------DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR---VK------PNGLAFL  180 (296)
T ss_dssp             --------------TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC---SS------EEEEEEC
T ss_pred             --------------CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC---CC------CccEEEC
Confidence                          6788886    3311000000  00012368888886 5544432111   11      233333 


Q ss_pred             -CCEEEEEeecccEEEEEECC-CCce-eecccC-CCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          224 -RGRFYVFGIYSFSVSSFDLK-KHVW-SEVQTL-RPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       224 -~g~ly~~gg~~~~i~~yd~~-~~~W-~~i~~~-~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                       +|++++.....+.|++||+. +++. ...... .....-....+..+|+||+..  .      ..|++||++...-..
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~------~~v~~~~~~g~~~~~  251 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G------DGVHVLTPDGDELGR  251 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T------TEEEEECTTSCEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C------CeEEEECCCCCEEEE
Confidence             56666666666799999986 4554 211111 111111122234488888876  1      245566887554333

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=92.28  E-value=5.5  Score=34.97  Aligned_cols=65  Identities=11%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             CCEEEEEeecccEEEEEECCC-CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKK-HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~-~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++..++.|+..+.|..||+.+ .+-...-.... ..........++.+++.++.++    .+.+|  |..+.+
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~----~i~v~--d~~~~~  251 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDT----NSFLV--DVSTLQ  251 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETTS----EEEEE--ETTTCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC-CceeEEEECCCCCEEEEecCCc----eEEEE--ECCCCc
Confidence            567778888889999999987 33221111111 1111112223677777765432    56666  655543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.26  E-value=1.8  Score=41.98  Aligned_cols=126  Identities=11%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             eeeEEECCEEEEEeecccEEEEEEC-CCC--ceeecccCCCC-------cccceeEEeeCCeEEEEEeecCCCCCceeEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDL-KKH--VWSEVQTLRPP-------GVMFSFLIASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~-~~~--~W~~i~~~~~~-------~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                      .+.++.++.+|+.+...+.|+++|. .+.  .|+.-......       .......+..+++||+...       ...++
T Consensus        56 ~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~  128 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLL  128 (571)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred             cccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEE
Confidence            4556789999998764578999998 665  68764322110       0111234567888887642       24577


Q ss_pred             EeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          288 KVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       288 ~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      .+|..+.  .|+.-..-+...    ..       ...+-++.+++||+-.........-.++-+|.++++  ..|+.-
T Consensus       129 alD~~tG~~~W~~~~~~~~~~----~~-------~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~--~~W~~~  193 (571)
T 2ad6_A          129 ALDAKTGKINWEVEVCDPKVG----ST-------LTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE--LKWRAF  193 (571)
T ss_dssp             EEETTTCCEEEEEECCCGGGT----CB-------CCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC--EEEEEE
T ss_pred             EEECCCCCEEEEecCCCCCcc----ce-------eccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc--EEEEEc
Confidence            7887654  487432211110    00       112334568888876532111111233445888776  568654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=92.19  E-value=5.4  Score=34.68  Aligned_cols=51  Identities=12%  Similarity=0.043  Sum_probs=31.0

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      .+.+||..+.+-...-....   ..     ..++.+  ++.+++.|+.++.|..||..+.+
T Consensus       196 ~i~i~d~~~~~~~~~~~~h~---~~-----v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          196 LVKVWNLANCKLKTNHIGHT---GY-----LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCS---SC-----EEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             EEEEEECCCCceeeEecCCC---Cc-----EEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            57788887654332211111   10     222333  57888889988999999997764

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=92.14  E-value=7.7  Score=36.29  Aligned_cols=53  Identities=11%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeC--CCCCCCCCcceEEeecceEEeecCc--ceEecC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHL--PPAQEPRAGSCFIGANGFFFTTTPR--FGFSRI  124 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~g~i~v~gg~--~~ynp~  124 (392)
                      ++.+|++.|       +..|.||..+++....  +.++  . --++....|.+|++-|.  ++||+.
T Consensus       158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~~y~rfd~~  214 (460)
T 1qhu_A          158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGNQFLRFNPV  214 (460)
T ss_dssp             SSEEEEEET-------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETTEEEEECTT
T ss_pred             CCeEEEEec-------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECCEEEEEcCc
Confidence            445566655       5678899887654321  2222  1 12344447889998775  888876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=92.07  E-value=10  Score=37.50  Aligned_cols=97  Identities=15%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             ceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEee---cccEEEEEECCCCc---eeecccCCCCccc
Q 016239          186 RLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGI---YSFSVSSFDLKKHV---WSEVQTLRPPGVM  259 (392)
Q Consensus       186 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg---~~~~i~~yd~~~~~---W~~i~~~~~~~~~  259 (392)
                      ...++++|..++.|+.+..-...   .     ...+..+|.+|+...   ....|+.+|+.+..   |+.+....+.. .
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~---~-----~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~  321 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGA---K-----YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA-S  321 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSC---C-----EEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC-E
T ss_pred             ceEEEEEcCCCCceEEeecCCCc---e-----EEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC-e
Confidence            34677777767778776532111   1     233335666666654   23689999997654   77764433211 1


Q ss_pred             ceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          260 FSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       260 ~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ...+...+++|++....+.    ...+|.++.....
T Consensus       322 l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~  353 (695)
T 2bkl_A          322 LLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKP  353 (695)
T ss_dssp             EEEEEEETTEEEEEEEETT----EEEEEEEETTCCE
T ss_pred             EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCe
Confidence            1223334888887765433    5788888865443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.06  E-value=2.6  Score=37.70  Aligned_cols=105  Identities=12%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CC-EEEEEeecccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RG-RFYVFGIYSFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~~i~~yd  241 (392)
                      +++.++.|+.+           .++.++|..+++-.  ..+... ...     ...+.+  ++ .+++.|+.++.|..||
T Consensus       138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~--~~~~~h-~~~-----V~~~~~~~~~~~~l~s~s~D~~v~iwd  198 (344)
T 4gqb_B          138 SGTQAVSGSKD-----------ICIKVWDLAQQVVL--SSYRAH-AAQ-----VTCVAASPHKDSVFLSCSEDNRILLWD  198 (344)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTTEEE--EEECCC-SSC-----EEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCC-----------CeEEEEECCCCcEE--EEEcCc-CCc-----eEEEEecCCCCCceeeecccccccccc
Confidence            56667776642           25888888776422  111111 110     222232  33 5778888889999999


Q ss_pred             CCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      +.+.+-...-...........+..  .++++++.|+.++    .+.+|  |..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg----~v~~w--d~~~~  247 (344)
T 4gqb_B          199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG----TVSLV--DTKST  247 (344)
T ss_dssp             TTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS----EEEEE--ESCC-
T ss_pred             ccccceeeeeecceeeccceeeeecCCCCcceEEeccCC----cEEEE--ECCCC
Confidence            987654332111111111122222  2567777776443    67777  65543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=92.05  E-value=5  Score=34.00  Aligned_cols=145  Identities=7%  Similarity=-0.082  Sum_probs=76.1

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeec--ccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIY--SFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~--~~~i~~y  240 (392)
                      ++++|+.-..           ...+.+++.....-+.+.....  ..     ....++.  ++.||+....  .+.|+++
T Consensus        90 ~~~lyv~d~~-----------~~~I~~~~~~g~~~~~~~~~~~--~~-----P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           90 GRTIFWTDSQ-----------LDRIEVAKMDGTQRRVLFDTGL--VN-----PRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             TTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSC--SS-----EEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CCeEEEEECC-----------CCEEEEEEcCCCCEEEEEECCC--CC-----ccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            5789987432           2267888876443222211111  11     1333443  5899998754  4689999


Q ss_pred             ECCCCceeecccCCCCcccceeEEee--CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccCc
Q 016239          241 DLKKHVWSEVQTLRPPGVMFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDK  318 (392)
Q Consensus       241 d~~~~~W~~i~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~  318 (392)
                      ++....-+.+.....  .....++..  +++||+....      ...|+++|..+..-..+..  ..             
T Consensus       152 ~~dg~~~~~~~~~~~--~~P~gia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~--~~-------------  208 (267)
T 1npe_A          152 HMDGTNRRILAQDNL--GLPNGLTFDAFSSQLCWVDAG------THRAECLNPAQPGRRKVLE--GL-------------  208 (267)
T ss_dssp             ETTSCCCEEEECTTC--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTEEEEEEEEE--CC-------------
T ss_pred             ecCCCCcEEEEECCC--CCCcEEEEcCCCCEEEEEECC------CCEEEEEecCCCceEEEec--CC-------------
Confidence            986543333321111  112223332  5788887632      3467777876543222211  00             


Q ss_pred             cceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          319 FASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       319 ~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                      ....+++..++.||+.....   .  .+..+|+.+.+
T Consensus       209 ~~P~gi~~d~~~lyva~~~~---~--~v~~~d~~~g~  240 (267)
T 1npe_A          209 QYPFAVTSYGKNLYYTDWKT---N--SVIAMDLAISK  240 (267)
T ss_dssp             CSEEEEEEETTEEEEEETTT---T--EEEEEETTTTE
T ss_pred             CCceEEEEeCCEEEEEECCC---C--eEEEEeCCCCC
Confidence            12456666799999987421   1  23445777655

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=91.98  E-value=5.7  Score=34.43  Aligned_cols=64  Identities=9%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe---eCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA---SPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~---~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++.+++.|+.++.|..||+.+.+-........ ......+..   .++.+++.|+.+.    .+.+|  |..+.
T Consensus       152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iW--d~~~~  218 (304)
T 2ynn_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDL----TIKIW--DYQTK  218 (304)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTS----EEEEE--ETTTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCC----eEEEE--eCCCC
Confidence            45788889989999999986543211100011 111111111   1556666665443    68888  65544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=91.98  E-value=2.3  Score=37.57  Aligned_cols=62  Identities=10%  Similarity=0.106  Sum_probs=35.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCC-Ccc-cceeEEe-e--CCeEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP-PGV-MFSFLIA-S--PNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~-~~~-~~~~~~~-~--~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      .+.+++.|+.++.|..||..++.|..+..... ... ....+.. .  ++++++.|+.++    .+.+|.+
T Consensus       260 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg----~v~~W~~  326 (330)
T 2hes_X          260 FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG----IVNFWSL  326 (330)
T ss_dssp             TTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS----EEEEEEC
T ss_pred             CCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC----cEEEEEe
Confidence            45566778888899999998888866533221 111 1112221 1  467777776543    6888843

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=91.82  E-value=5.2  Score=35.80  Aligned_cols=105  Identities=7%  Similarity=-0.059  Sum_probs=59.1

Q ss_pred             eEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCC
Q 016239          167 KFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       167 ~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++++.|+.+           ..+.+||..+......-..... ..    .-.+.+..  ++.+++.++.++.|..+|+.+
T Consensus        87 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~h-~~----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (383)
T 3ei3_B           87 TTVAVGSKG-----------GDIILWDYDVQNKTSFIQGMGP-GD----AITGMKFNQFNTNQLFVSSIRGATTLRDFSG  150 (383)
T ss_dssp             TEEEEEEBT-----------SCEEEEETTSTTCEEEECCCST-TC----BEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred             CEEEEEcCC-----------CeEEEEeCCCcccceeeecCCc-CC----ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence            677776641           2588899887766544322111 11    11233333  457788888889999999998


Q ss_pred             CceeecccCCCCcc-cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          245 HVWSEVQTLRPPGV-MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       245 ~~W~~i~~~~~~~~-~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      +....+........ ........++++++.|+.+.    .+.+|  |...
T Consensus       151 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~--d~~~  194 (383)
T 3ei3_B          151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG----RLLLL--GLDG  194 (383)
T ss_dssp             CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS----EEEEE--ETTS
T ss_pred             CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC----CEEEE--ECCC
Confidence            76665543332111 11222333677777775432    56677  6543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=91.58  E-value=4.1  Score=35.79  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CCEEEEEeec----------ccEEEEEECCCCceeecccCCCC-cccceeEEeeCCeEEEEE
Q 016239          224 RGRFYVFGIY----------SFSVSSFDLKKHVWSEVQTLRPP-GVMFSFLIASPNMLVLAG  274 (392)
Q Consensus       224 ~g~ly~~gg~----------~~~i~~yd~~~~~W~~i~~~~~~-~~~~~~~~~~~g~l~v~g  274 (392)
                      +|.||+....          .+.|.+||+..+.-..+..+... ......++..+++||+..
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~  300 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT  300 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence            5789888644          46799999975555545432211 112223445689999875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=91.55  E-value=6.7  Score=34.36  Aligned_cols=136  Identities=10%  Similarity=-0.024  Sum_probs=69.1

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEe--ecceEEeecC---cceEecCCcCceeecCCC-Cc-CccCceEEEEEcC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIG--ANGFFFTTTP---RFGFSRILNTSWHLTSPL-RF-SRINPLVGVFYDH  150 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~g~i~v~gg---~~~ynp~~~~~W~~~~~~-~~-~r~~~~~~~~~~~  150 (392)
                      ..++.+|+.+.+-...-+... .....++.  .++.+|+...   ..++|+. +++-...-.. .. +........+.  
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s--  239 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLLDDGKEHFFINISLD--  239 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCC-TTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECCCSSSCCCEEEEEEE--
T ss_pred             ceEEEEcCCCCceEEEecCCC-CccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcCCCCCCcccceEEEC--
Confidence            458889988766433212111 11122232  2456777643   4678887 4533221111 11 11111112221  


Q ss_pred             CCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECC-EEE
Q 016239          151 DRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRG-RFY  228 (392)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g-~ly  228 (392)
                                  .++..+|+....           ...+.+||..+++-...-+.+.+         ...+. -+| .+|
T Consensus       240 ------------~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~s~dg~~l~  287 (353)
T 3vgz_A          240 ------------TARQRAFITDSK-----------AAEVLVVDTRNGNILAKVAAPES---------LAVLFNPARNEAY  287 (353)
T ss_dssp             ------------TTTTEEEEEESS-----------SSEEEEEETTTCCEEEEEECSSC---------CCEEEETTTTEEE
T ss_pred             ------------CCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEEcCCC---------ceEEECCCCCEEE
Confidence                        115567776432           23688999877764332222222         12222 244 588


Q ss_pred             EEeecccEEEEEECCCCceee
Q 016239          229 VFGIYSFSVSSFDLKKHVWSE  249 (392)
Q Consensus       229 ~~gg~~~~i~~yd~~~~~W~~  249 (392)
                      +.+...+.|..||+.+.+...
T Consensus       288 v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEE
T ss_pred             EEECCCCeEEEEECCCCeEEE
Confidence            887677899999998876543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=91.48  E-value=6.2  Score=33.89  Aligned_cols=60  Identities=12%  Similarity=0.090  Sum_probs=35.7

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCC-eEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPN-MLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +|.||+..  .+.|.+||+..+....+.....  ....+...-++ .||+..        ...+|++++.++.
T Consensus       228 ~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t--------~~~l~~~~~~~~~  288 (296)
T 3e5z_A          228 GGLIWASA--GDGVHVLTPDGDELGRVLTPQT--TSNLCFGGPEGRTLYMTV--------STEFWSIETNVRG  288 (296)
T ss_dssp             TSCEEEEE--TTEEEEECTTSCEEEEEECSSC--CCEEEEESTTSCEEEEEE--------TTEEEEEECSCCB
T ss_pred             CCCEEEEc--CCeEEEECCCCCEEEEEECCCC--ceeEEEECCCCCEEEEEc--------CCeEEEEEccccc
Confidence            68888877  5789999998665555533221  11111111233 567654        2368888887765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=91.45  E-value=6.8  Score=34.29  Aligned_cols=127  Identities=13%  Similarity=0.018  Sum_probs=67.6

Q ss_pred             eEEEEEeCCCCCeecCC-CCCCCCCCCCCccceeeEEE-CC-EEEEEeecccEEEEEECCCC---ceeecccCCCCcccc
Q 016239          187 LAVEIYDPHSDSWELCP-PLPADFRSGYSSQYLSSALF-RG-RFYVFGIYSFSVSSFDLKKH---VWSEVQTLRPPGVMF  260 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~i~~yd~~~~---~W~~i~~~~~~~~~~  260 (392)
                      ..+.+||+.+++.+.+. .+..+         ...+.. +| .||+.....+.|.+||+...   +.+.+...+  . -.
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p---------~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~--g-P~  232 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVP---------GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP--N-PG  232 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCC---------CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS--S-EE
T ss_pred             ceEEEEeCCCCEEEEeccCCccC---------cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC--C-CC
Confidence            46889998877655432 11111         222332 34 58888666679999998753   333332221  1 11


Q ss_pred             eeEEeeCCeEEEEEeecCCC----CCceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          261 SFLIASPNMLVLAGMCNAPR----GPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       261 ~~~~~~~g~l~v~gg~~~~~----~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                      ...+..+|+||+........    .....|+++|++...-..+. .|....  +        ....+++..+++|||.+.
T Consensus       233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g~~--~--------~~~~~~~~~~g~L~v~~~  301 (322)
T 2fp8_A          233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPPFA--G--------EHFEQIQEHDGLLYIGTL  301 (322)
T ss_dssp             EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTTTT--T--------SCCCEEEEETTEEEEECS
T ss_pred             CeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCCCc--c--------ccceEEEEeCCEEEEeec
Confidence            12233478899876431110    01356888898755433332 232110  0        123445567899999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.43  E-value=3  Score=37.38  Aligned_cols=101  Identities=5%  Similarity=-0.075  Sum_probs=54.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CC-EEEEEeecccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RG-RFYVFGIYSFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~~i~~yd  241 (392)
                      ++++++.|+.+           ..+.+||..+.+  .+..+... ...     ...+.+  ++ .+.+.|+.++.|..||
T Consensus       238 ~~~~la~g~~d-----------~~i~~wd~~~~~--~~~~~~~~-~~~-----v~~l~~sp~~~~~lasgs~D~~i~iwd  298 (357)
T 4g56_B          238 KDDTFACGDET-----------GNVSLVNIKNPD--SAQTSAVH-SQN-----ITGLAYSYHSSPFLASISEDCTVAVLD  298 (357)
T ss_dssp             STTEEEEEESS-----------SCEEEEESSCGG--GCEEECCC-SSC-----EEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             ccceEEEeecc-----------cceeEEECCCCc--EeEEEecc-cee-----EEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence            56777777642           258888876543  22211111 111     223333  34 5666677788999999


Q ss_pred             CCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeec
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      ..+.+-....  .-.. ....++.  .++++++.++.++    .+.+|.+..
T Consensus       299 ~~~~~~~~~~--~H~~-~V~~vafsP~d~~~l~s~s~Dg----~v~iW~~~~  343 (357)
T 4g56_B          299 ADFSEVFRDL--SHRD-FVTGVAWSPLDHSKFTTVGWDH----KVLHHHLPS  343 (357)
T ss_dssp             TTSCEEEEEC--CCSS-CEEEEEECSSSTTEEEEEETTS----CEEEEECC-
T ss_pred             CCCCcEeEEC--CCCC-CEEEEEEeCCCCCEEEEEcCCC----eEEEEECCC
Confidence            9877543321  1111 1122222  3677777776544    688885543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=91.04  E-value=7.2  Score=34.21  Aligned_cols=103  Identities=12%  Similarity=0.175  Sum_probs=56.8

Q ss_pred             CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECC
Q 016239          166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~  243 (392)
                      +++++.|+.+           ..+.+||..+........+... ...     ...+.+  ++...+.|+.++.|..||..
T Consensus        54 g~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~h-~~~-----v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           54 GNFLIAGSWA-----------NDVRCWEVQDSGQTIPKAQQMH-TGP-----VLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             SEEEEEEETT-----------SEEEEEEECTTSCEEEEEEEEC-SSC-----EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ceEEEEECCC-----------CcEEEEEcCCCCceeEEEeccc-cCC-----EEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            5777777652           2578888776333221111111 110     222333  67777788888999999999


Q ss_pred             CCceeecccCCCCcccceeEE---eeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          244 KHVWSEVQTLRPPGVMFSFLI---ASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       244 ~~~W~~i~~~~~~~~~~~~~~---~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      +.+........   .....+.   ..++.+++.++.++    .+.+|  |..+.
T Consensus       117 ~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg----~i~vw--d~~~~  161 (368)
T 3mmy_A          117 SNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDK----TLKFW--DTRSS  161 (368)
T ss_dssp             TTEEEEEEECS---SCEEEEEEEECSSCEEEEEEETTS----EEEEE--CSSCS
T ss_pred             CCCceeecccc---CceEEEEEEeCCCCCEEEEccCCC----cEEEE--ECCCC
Confidence            88755532211   1112222   34677777776443    57777  65544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=90.95  E-value=7.6  Score=33.94  Aligned_cols=103  Identities=12%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE----CCEEEEEeecccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF----RGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~g~ly~~gg~~~~i~~y  240 (392)
                      ++.+++.|+.           ...+.+||..+..-.........        ..+....    ++..++.|+..+.|..|
T Consensus       179 ~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          179 EERVVCAGYD-----------NGDIKLFDLRNMALRWETNIKNG--------VCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             CCCEEEEEET-----------TSEEEEEETTTTEEEEEEECSSC--------EEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             CCCEEEEEcc-----------CCeEEEEECccCceeeecCCCCc--------eEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            5566666654           12688899877653222211111        1223332    56778888888899999


Q ss_pred             ECCCCceeec-c--cCCCCcccceeEE-eeCCe-EEEEEeecCCCCCceeEEEee
Q 016239          241 DLKKHVWSEV-Q--TLRPPGVMFSFLI-ASPNM-LVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       241 d~~~~~W~~i-~--~~~~~~~~~~~~~-~~~g~-l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      |..+.+-... .  ...........+. ..++. +++.|+.++    .+.+|.++
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~  290 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG----GLHLWKYE  290 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS----EEEEEEEE
T ss_pred             eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC----cEEEeecC
Confidence            9876431111 0  0001111112222 23556 666665433    68888664

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=90.95  E-value=7.7  Score=34.00  Aligned_cols=22  Identities=9%  Similarity=0.063  Sum_probs=17.5

Q ss_pred             CCEEEEEeecccEEEEEECCCC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKH  245 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~  245 (392)
                      .+.+++.++..+.|..||+.+.
T Consensus       240 ~~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          240 LGDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             ETTEEEEECSSSEEEEEEESST
T ss_pred             cCCEEEEEecCCEEEEEeCCCc
Confidence            3667777888889999998765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.89  E-value=8  Score=34.08  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      +++.++.|+.+           ..+.+||..++.-...-..+.. ...     ...+.+  +|.+.+.|+.++.|..||.
T Consensus       237 ~~~~l~s~s~d-----------~~v~iwd~~~~~~~~~~~~~~~-~~~-----v~~~~~s~~g~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          237 NGNAFATGSDD-----------ATCRLFDLRADQELMTYSHDNI-ICG-----ITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             TSSEEEEEETT-----------SCEEEEETTTTEEEEEECCTTC-CSC-----EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEcCC-----------CcEEEEECCCCcEEEEEccCCc-ccc-----eEEEEECCCCCEEEEECCCCeEEEEEc
Confidence            55666776642           2588888876542211111110 111     222333  6788888988899999998


Q ss_pred             CCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEE
Q 016239          243 KKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                      .+.+-..  .+.........+ ...++++++.|+.++    .+.+|
T Consensus       300 ~~~~~~~--~~~~h~~~v~~~~~s~dg~~l~s~s~D~----~i~iW  339 (340)
T 1got_B          300 LKADRAG--VLAGHDNRVSCLGVTDDGMAVATGSWDS----FLKIW  339 (340)
T ss_dssp             TTCCEEE--EEECCSSCEEEEEECTTSSCEEEEETTS----CEEEE
T ss_pred             ccCcEee--EeecCCCcEEEEEEcCCCCEEEEEcCCc----cEEec
Confidence            7654221  111111111122 233677777776443    57777

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.87  E-value=13  Score=36.42  Aligned_cols=198  Identities=9%  Similarity=-0.089  Sum_probs=103.2

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC----cceEecCCcCceeecCCCCcCccCceEEEEEcCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP----RFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHD  151 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg----~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~  151 (392)
                      .++...|+....-....++.......+++..  ++.||+..-    .+++++. ....+.+..... ..-.++++-  . 
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~~~g~-~~P~GlAvD--~-   89 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGL-DYPEGMAVD--W-   89 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSC-SCCCEEEEE--T-
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEEeCCC-CCcceEEEE--e-
Confidence            4567777765443332233222333344443  789998742    3566665 333333222111 111223221  1 


Q ss_pred             CCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecC--CCCCCCCCCCCCccceeeEEE--CCEE
Q 016239          152 RGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELC--PPLPADFRSGYSSQYLSSALF--RGRF  227 (392)
Q Consensus       152 ~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~--~g~l  227 (392)
                                  .+++||+.-..           ...+++++.....=+.+  ..+..|         ...++.  +|.|
T Consensus        90 ------------~~~~LY~tD~~-----------~~~I~v~~~dG~~~~~l~~~~l~~P---------~~iavdp~~G~l  137 (628)
T 4a0p_A           90 ------------LGKNLYWADTG-----------TNRIEVSKLDGQHRQVLVWKDLDSP---------RALALDPAEGFM  137 (628)
T ss_dssp             ------------TTTEEEEEETT-----------TTEEEEEETTSTTCEEEECSSCCCE---------EEEEEETTTTEE
T ss_pred             ------------CCCEEEEEECC-----------CCEEEEEecCCCcEEEEEeCCCCCc---------ccEEEccCCCeE
Confidence                        16889987432           23688888754432222  122222         344444  6899


Q ss_pred             EEEe-ecccEEEEEECCCCceeecccCCCCcccceeEEee--CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCH
Q 016239          228 YVFG-IYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPH  304 (392)
Q Consensus       228 y~~g-g~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~  304 (392)
                      |+.. |....|+++++....-+.+...   ......++..  +++||+.-..      ...|+++|.+...=+.+...  
T Consensus       138 Y~tD~g~~~~I~r~~~dG~~~~~l~~~---~~~P~GlalD~~~~~LY~aD~~------~~~I~~~d~dG~~~~v~~~~--  206 (628)
T 4a0p_A          138 YWTEWGGKPKIDRAAMDGSERTTLVPN---VGRANGLTIDYAKRRLYWTDLD------TNLIESSNMLGLNREVIADD--  206 (628)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEEEECS---CSSEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEEC--
T ss_pred             EEeCCCCCCEEEEEeCCCCceEEEECC---CCCcceEEEccccCEEEEEECC------CCEEEEEcCCCCceEEeecc--
Confidence            9986 4457899999876554444321   1111223333  6899998632      34566777655322222110  


Q ss_pred             HHHHhhcCCcccCccceeEEEEeCCEEEEEec
Q 016239          305 DFLYSLVDTEEDDKFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg  336 (392)
                       .            ...+++++.++.||+...
T Consensus       207 -l------------~~P~glav~~~~ly~tD~  225 (628)
T 4a0p_A          207 -L------------PHPFGLTQYQDYIYWTDW  225 (628)
T ss_dssp             -C------------SCEEEEEEETTEEEEEET
T ss_pred             -C------------CCceEEEEECCEEEEecC
Confidence             0            135678888999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=90.58  E-value=8.1  Score=33.61  Aligned_cols=66  Identities=8%  Similarity=-0.103  Sum_probs=36.8

Q ss_pred             EEECCEEEEEeecccEEEEEECCC-Cc--eeecccCCCCcccceeEE-ee-CCeEEEEEeecCCCCCceeEEEeecC
Q 016239          221 ALFRGRFYVFGIYSFSVSSFDLKK-HV--WSEVQTLRPPGVMFSFLI-AS-PNMLVLAGMCNAPRGPSFNLWKVDEL  292 (392)
Q Consensus       221 ~~~~g~ly~~gg~~~~i~~yd~~~-~~--W~~i~~~~~~~~~~~~~~-~~-~g~l~v~gg~~~~~~~~~~v~~~d~~  292 (392)
                      +.+.+..++.++..+.|..||..+ ..  ..........  ....+. .. +++++++|+.++    .+.+|.++..
T Consensus       156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg----~i~i~~~~~~  226 (342)
T 1yfq_A          156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY--QIRDVALLPKEQEGYACSSIDG----RVAVEFFDDQ  226 (342)
T ss_dssp             EEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS--CEEEEEECSGGGCEEEEEETTS----EEEEEECCTT
T ss_pred             EEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC--ceeEEEECCCCCCEEEEEecCC----cEEEEEEcCC
Confidence            333333366677778999999987 33  2222211111  112222 23 577777776433    6888877665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=90.55  E-value=8.7  Score=33.92  Aligned_cols=91  Identities=11%  Similarity=0.010  Sum_probs=48.6

Q ss_pred             CCCeecCCCCC-CCCCCCCCccceeeE-EECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEE
Q 016239          196 SDSWELCPPLP-ADFRSGYSSQYLSSA-LFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLA  273 (392)
Q Consensus       196 ~~~W~~~~~~~-~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~  273 (392)
                      -.+|+.+.... .+ ..     ....+ .-++.+|+.+. .+.|+.-+=.-++|+.+....... ........+++++++
T Consensus       108 G~tW~~~~~~~~~~-~~-----~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~-~~~~~~~~~~~~~~~  179 (327)
T 2xbg_A          108 GQSWSQIPLDPKLP-GS-----PRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALVQEAIGV-MRNLNRSPSGEYVAV  179 (327)
T ss_dssp             TSSCEECCCCTTCS-SC-----EEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEECSCCCC-EEEEEECTTSCEEEE
T ss_pred             CCCceECccccCCC-CC-----eEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEeecCCCcc-eEEEEEcCCCcEEEE
Confidence            46899886421 11 11     12233 34678888765 344554433456899986544322 222222336777776


Q ss_pred             EeecCCCCCceeEEEe-ecCccceEeccc
Q 016239          274 GMCNAPRGPSFNLWKV-DELSMEFSEIAI  301 (392)
Q Consensus       274 gg~~~~~~~~~~v~~~-d~~~~~W~~~~~  301 (392)
                      +.       ...+|+- |....+|+.+..
T Consensus       180 g~-------~G~~~~S~d~gG~tW~~~~~  201 (327)
T 2xbg_A          180 SS-------RGSFYSTWEPGQTAWEPHNR  201 (327)
T ss_dssp             ET-------TSSEEEEECTTCSSCEEEEC
T ss_pred             EC-------CCcEEEEeCCCCCceeECCC
Confidence            62       1234544 333678998854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.53  E-value=4.9  Score=40.28  Aligned_cols=63  Identities=5%  Similarity=0.167  Sum_probs=36.5

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ++.+++.|+..+.|..||..+.+-...-.... ..........++.+++.|+.++    .+.+|  |..+
T Consensus       197 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg----~v~vw--d~~~  259 (814)
T 3mkq_A          197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDG----TLKIW--NSST  259 (814)
T ss_dssp             TCCEEEEECTTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSSSSEEEEEETTS----CEEEE--ETTT
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCC----eEEEE--ECCC
Confidence            67788888888999999998765322211111 1111122233677777776433    57777  5544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.37  E-value=8.9  Score=33.76  Aligned_cols=111  Identities=16%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCee--cCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWE--LCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~y  240 (392)
                      ++.+++.|+.+           ..+.+||..++.-.  .+.. ..  ..     ....+.+  +|...+.|+ .+.|..|
T Consensus       181 dg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~~~-~h--~~-----~v~~l~fs~~g~~l~s~~-~~~v~iw  240 (343)
T 3lrv_A          181 DSLLLALYSPD-----------GILDVYNLSSPDQASSRFPV-DE--EA-----KIKEVKFADNGYWMVVEC-DQTVVCF  240 (343)
T ss_dssp             TSCEEEEECTT-----------SCEEEEESSCTTSCCEECCC-CT--TS-----CEEEEEECTTSSEEEEEE-SSBEEEE
T ss_pred             CCCEEEEEcCC-----------CEEEEEECCCCCCCccEEec-cC--CC-----CEEEEEEeCCCCEEEEEe-CCeEEEE
Confidence            66777777652           26889998776532  1211 01  11     1223333  566666666 5599999


Q ss_pred             ECCCCcee-ecccCCC--Cccc-ceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          241 DLKKHVWS-EVQTLRP--PGVM-FSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       241 d~~~~~W~-~i~~~~~--~~~~-~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                      |+.+.+-. .+.....  .... .......++++++.++.+..   .+.+|.++.....|..
T Consensus       241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~---~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN---SLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             ETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT---EEEEEEECTTTCSEEE
T ss_pred             EcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC---cEEEEEEcccccceEe
Confidence            99876421 1221110  0111 11222336777777643121   7899999888888987

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=90.26  E-value=2.2  Score=42.27  Aligned_cols=125  Identities=11%  Similarity=0.041  Sum_probs=68.7

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCC-------cccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPP-------GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~-------~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      .+.++.+++||+... .+.|+++|..+.  .|+.-......       .......++.+++||+...       ...++.
T Consensus        60 ~~P~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~a  131 (668)
T 1kv9_A           60 ATPLFHDGVIYTSMS-WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIA  131 (668)
T ss_dssp             CCCEEETTEEEEEEG-GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEE
T ss_pred             cCCEEECCEEEEECC-CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEE
Confidence            456678999999765 468999998665  68764322210       1112234556888887542       245777


Q ss_pred             eecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          289 VDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       289 ~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      +|..+.  .|+.-..-+...    +       ....+-++.++++|+-.+.......-.++-+|.++++  ..|+.-
T Consensus       132 lD~~tG~~~W~~~~~~~~~~----~-------~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~--~~W~~~  195 (668)
T 1kv9_A          132 LDAKTGKAIWSQQTTDPAKP----Y-------SITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK--LAWRFY  195 (668)
T ss_dssp             EETTTCCEEEEEECSCTTSS----C-------BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC--EEEEEE
T ss_pred             EECCCCCEeeeeccCCCCCc----c-------eecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc--EEEEec
Confidence            787654  487543211110    0       1122334578888875432111111233445888776  568763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.23  E-value=9.3  Score=38.19  Aligned_cols=127  Identities=12%  Similarity=0.018  Sum_probs=68.2

Q ss_pred             cceEEe--e--cCcceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccc
Q 016239          109 NGFFFT--T--TPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIE  184 (392)
Q Consensus       109 ~g~i~v--~--gg~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~  184 (392)
                      +|.|++  .  +|..+||+. +++++....-.........+.+.+.              ++.|++....          
T Consensus       482 ~g~lWi~~~t~~Gl~~~d~~-~~~~~~~~~~~~~~~~~~~~i~~d~--------------~g~lWigt~~----------  536 (758)
T 3ott_A          482 EGNVWVLLYNNKGIDKINPR-TREVTKLFADELTGEKSPNYLLCDE--------------DGLLWVGFHG----------  536 (758)
T ss_dssp             TSCEEEEETTCSSEEEEETT-TTEEEEECTTTSCGGGCEEEEEECT--------------TSCEEEEETT----------
T ss_pred             CCCEEEEccCCCCcEEEeCC-CCceEEecCCCcCCCcccceEEECC--------------CCCEEEEecC----------
Confidence            577887  2  367899998 6877765321111111122233232              6788864321          


Q ss_pred             cceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCccccee
Q 016239          185 DRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSF  262 (392)
Q Consensus       185 ~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~  262 (392)
                         .+.+||+.+++++...  .++..       ...+.+.-+|.|++.+.  +-|.+||+.+.+...... +..... .+
T Consensus       537 ---Gl~~~~~~~~~~~~~~~~gl~~~-------~i~~i~~~~g~lWi~t~--~Gl~~~~~~~~~~~~~~~-~~~~~~-~~  602 (758)
T 3ott_A          537 ---GVMRINPKDESQQSISFGSFSNN-------EILSMTCVKNSIWVSTT--NGLWIIDRKTMDARQQNM-TNKRFT-SL  602 (758)
T ss_dssp             ---EEEEECC--CCCCBCCCCC---C-------CEEEEEEETTEEEEEES--SCEEEEETTTCCEEEC---CCCCCS-EE
T ss_pred             ---ceEEEecCCCceEEecccCCCcc-------ceEEEEECCCCEEEECC--CCeEEEcCCCceeEEecC-CCCcee-ee
Confidence               4788999888877653  22221       11334445788777553  459999999988766432 221111 22


Q ss_pred             EEe-eCCeEEEEE
Q 016239          263 LIA-SPNMLVLAG  274 (392)
Q Consensus       263 ~~~-~~g~l~v~g  274 (392)
                      +.. .+|+||+.|
T Consensus       603 ~~~~~~G~l~fG~  615 (758)
T 3ott_A          603 LFDPKEDCVYLGG  615 (758)
T ss_dssp             EEETTTTEEEEEC
T ss_pred             EEECCCCcEEEec
Confidence            222 378888755

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=90.17  E-value=10  Score=36.87  Aligned_cols=111  Identities=11%  Similarity=0.116  Sum_probs=64.6

Q ss_pred             EEeecceEEeecC----cceEec-CCcC--ceeecCCCCcC-----c---cCceEEE--EEcCCCCcccccCCcccCCCe
Q 016239          105 FIGANGFFFTTTP----RFGFSR-ILNT--SWHLTSPLRFS-----R---INPLVGV--FYDHDRGHCDLASGFACNLPK  167 (392)
Q Consensus       105 ~~~~~g~i~v~gg----~~~ynp-~~~~--~W~~~~~~~~~-----r---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  167 (392)
                      .++.++.||+.+.    ++.+|. . ++  .|+.-......     +   ...+.++  .                 +++
T Consensus        58 P~v~~g~vyv~~~~~~~v~AlD~~~-tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~-----------------~g~  119 (599)
T 1w6s_A           58 PLVVDGKMYIHTSFPNNTFALGLDD-PGTILWQDKPKQNPAARAVACCDLVNRGLAYWPG-----------------DGK  119 (599)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTC-TTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECC-----------------CSS
T ss_pred             cEEECCEEEEEeCCCCEEEEEeCCC-CCcEEEEECCCCCccccccccccccccceEEEec-----------------CCc
Confidence            3556899999865    478898 6 44  78765433211     1   1122333  3                 555


Q ss_pred             ----EEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCC-CCCCCCCCccceeeEEECCEEEEEee-----ccc
Q 016239          168 ----FIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLP-ADFRSGYSSQYLSSALFRGRFYVFGI-----YSF  235 (392)
Q Consensus       168 ----iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~-~~~~~~~~~~~~~~~~~~g~ly~~gg-----~~~  235 (392)
                          ||+....            ..+..+|..+++  |+.-..-+ .....     ..+.++.++++|+-.+     ..+
T Consensus       120 ~~~rV~v~t~d------------g~l~AlDa~TG~~~W~~~~~~~~~~~~~-----~ssP~v~~g~V~vg~~g~e~g~~g  182 (599)
T 1w6s_A          120 TPALILKTQLD------------GNVAALNAETGETVWKVENSDIKVGSTL-----TIAPYVVKDKVIIGSSGAELGVRG  182 (599)
T ss_dssp             SCCEEEEECTT------------SEEEEEETTTCCEEEEEECCCGGGTCBC-----CSCCEEETTEEEECCBCGGGTCCC
T ss_pred             ceeEEEEEcCC------------CEEEEEECCCCCEEEeecCCCCCcccee-----ecCCEEECCEEEEEecccccCCCC
Confidence                7776432            157888887765  87532211 01011     1355667999887543     357


Q ss_pred             EEEEEECCCC--ceeec
Q 016239          236 SVSSFDLKKH--VWSEV  250 (392)
Q Consensus       236 ~i~~yd~~~~--~W~~i  250 (392)
                      .|.+||.++.  .|+.-
T Consensus       183 ~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          183 YLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEc
Confidence            8999999876  47654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.07  E-value=9.5  Score=33.63  Aligned_cols=130  Identities=9%  Similarity=-0.083  Sum_probs=70.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE--CCEEEEEe-ecccEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF--RGRFYVFG-IYSFSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~--~g~ly~~g-g~~~~i~~  239 (392)
                      ++.||+.-..           ...++++++....-+.+.  .+..+         ...++.  +|.||+.. +....|++
T Consensus        90 ~g~ly~~d~~-----------~~~I~~~~~dG~~~~~l~~~~~~~P---------~giavdp~~g~ly~td~~~~~~I~r  149 (318)
T 3sov_A           90 GEKLYWTDSE-----------TNRIEVSNLDGSLRKVLFWQELDQP---------RAIALDPSSGFMYWTDWGEVPKIER  149 (318)
T ss_dssp             TTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSCSSE---------EEEEEEGGGTEEEEEECSSSCEEEE
T ss_pred             CCeEEEEECC-----------CCEEEEEECCCCcEEEEEeCCCCCc---------cEEEEeCCCCEEEEEecCCCCEEEE
Confidence            6788887422           226888887654323221  12111         333333  58999986 44578999


Q ss_pred             EECCCCceeecccCCCCcccceeEEe--eCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccC
Q 016239          240 FDLKKHVWSEVQTLRPPGVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDD  317 (392)
Q Consensus       240 yd~~~~~W~~i~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  317 (392)
                      +|+....-+.+.....  .....++.  .+++||+....      ...|+++|.+...-+.+..-.  .           
T Consensus       150 ~~~dG~~~~~~~~~~l--~~Pnglavd~~~~~lY~aD~~------~~~I~~~d~dG~~~~~~~~~~--~-----------  208 (318)
T 3sov_A          150 AGMDGSSRFIIINSEI--YWPNGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVKGS--L-----------  208 (318)
T ss_dssp             EETTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSC--C-----------
T ss_pred             EEcCCCCeEEEEECCC--CCccEEEEeccCCEEEEEECC------CCEEEEEcCCCCceEEEecCC--C-----------
Confidence            9986433222211111  11122333  37899998632      346777776653323322100  0           


Q ss_pred             ccceeEEEEeCCEEEEEec
Q 016239          318 KFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       318 ~~~~~~~~~~~~~i~v~gg  336 (392)
                       ....++++.++.+|+..-
T Consensus       209 -~~P~glav~~~~lywtd~  226 (318)
T 3sov_A          209 -PHPFALTLFEDILYWTDW  226 (318)
T ss_dssp             -SCEEEEEEETTEEEEEET
T ss_pred             -CCceEEEEeCCEEEEEec
Confidence             135677778999999853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.06  E-value=10  Score=34.02  Aligned_cols=109  Identities=19%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             CeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CC-EEEEEeeccc---EEEE
Q 016239          166 PKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RG-RFYVFGIYSF---SVSS  239 (392)
Q Consensus       166 ~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~---~i~~  239 (392)
                      +.+++.|+.+           ..+.+||..+++-...-..+.. ..++... ...+.+  ++ .+++.++..+   .|..
T Consensus       178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLSYTSP-NSGIKQQ-LSVVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             TTEEEEESSS-----------SCEEEEETTTTEEEEEECCCCC-SSCCCCC-EEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CcEEEEEcCC-----------CCEEEEECCCCCcceEEecccc-ccccCCc-eEEEEECCCCCCEEEEEECCCCCceEEE
Confidence            5677777652           2588888877654322222110 0000000 222333  23 5777777766   8999


Q ss_pred             EECCCCceeecccCC-CCcccceeEEe-e-CCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          240 FDLKKHVWSEVQTLR-PPGVMFSFLIA-S-PNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       240 yd~~~~~W~~i~~~~-~~~~~~~~~~~-~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ||..+..- .+.... ........+.. . ++++++.++.+.    .+.+|  |..+.
T Consensus       245 ~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg----~v~~w--d~~~~  295 (416)
T 2pm9_A          245 WDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN----TVLLW--NPESA  295 (416)
T ss_dssp             EETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS----EEEEE--CSSSC
T ss_pred             EeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCC----CEEEe--eCCCC
Confidence            99987531 111121 11111122222 2 677777776543    57777  65544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=89.97  E-value=11  Score=34.27  Aligned_cols=62  Identities=15%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      |.+.+.|+.++.|..||..+.+-...-.... ..........++++++.|+.++    .+.+|  |..+
T Consensus       308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~g~~l~s~s~D~----~i~vw--d~~~  369 (410)
T 1vyh_C          308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSCADDK----TLRVW--DYKN  369 (410)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSSSSCEEEEETTT----EEEEE--CCTT
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEECCC-CcEEEEEEcCCCCEEEEEeCCC----eEEEE--ECCC
Confidence            6677888888999999998764221111111 1111222233677777776443    68888  5543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=89.92  E-value=11  Score=34.06  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeec-CCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWEL-CPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd  241 (392)
                      ++++++.|+.+           ..+.+||..++.-.. +...... ..++... ...+.+  +|.+.+.|+.++.|..||
T Consensus       218 ~~~~l~~~s~d-----------~~v~iwd~~~~~~~~~~~~~~~~-~~~h~~~-v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          218 DGKYIAAGSLD-----------RAVRVWDSETGFLVERLDSENES-GTGHKDS-VYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             TCCEEEEEETT-----------SCEEEEETTTCCEEEEEC-------CCCSSC-EEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEcCC-----------CcEEEEECCCCcEEEeecccccC-CCCCCCC-EEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            56677777652           258888887764321 1110000 0110001 222333  577788888889999999


Q ss_pred             CCCC
Q 016239          242 LKKH  245 (392)
Q Consensus       242 ~~~~  245 (392)
                      +.+.
T Consensus       285 ~~~~  288 (393)
T 1erj_A          285 LQNA  288 (393)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            8754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=89.90  E-value=6.5  Score=35.00  Aligned_cols=67  Identities=13%  Similarity=0.082  Sum_probs=36.7

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      ++...+.++.++.|..+|+.+.+-...-...........+... ++.+++.|+.++    .+.+|  |..+.+.
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg----~v~~w--d~~~~~~  232 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK----KAMVW--DMRSGQC  232 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS----CEEEE--ETTTCCE
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC----eEEEE--ECCCCcE
Confidence            4556667777889999999887543221111111111111111 456777776543    67888  6665543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.62  E-value=12  Score=33.99  Aligned_cols=203  Identities=11%  Similarity=0.102  Sum_probs=100.6

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCC--CceeeCCCCCCCCCcceEEee---cceEEeec-------CcceEecCCcCce
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPAS--NSWFHLPPAQEPRAGSCFIGA---NGFFFTTT-------PRFGFSRILNTSW  129 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~r~~~~~~~~---~g~i~v~g-------g~~~ynp~~~~~W  129 (392)
                      ...|++...       .-++.++...  .+|....+......-++++..   .+.||+.+       ++++.+.. ..+|
T Consensus        22 ~g~l~vgt~-------~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~-G~tW   93 (394)
T 3b7f_A           22 PVMLLVATI-------KGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDG-GGNW   93 (394)
T ss_dssp             CCEEEEEET-------TEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESST-TSCC
T ss_pred             CCEEEEEec-------CceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCC-CCCc
Confidence            456666432       2366677654  689875321111112234433   56788774       45666665 6799


Q ss_pred             eecCCC---CcC--c----cCceE-EEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCe
Q 016239          130 HLTSPL---RFS--R----INPLV-GVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSW  199 (392)
Q Consensus       130 ~~~~~~---~~~--r----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W  199 (392)
                      +.+...   +..  +    ....+ .+..+...           ..+.+|+.+..            ..+++.+-...+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-----------~~~~l~~g~~~------------ggl~~S~DgG~tW  150 (394)
T 3b7f_A           94 TEATRPPAFNKAPEGETGRVVDHVFWLTPGHAS-----------EPGTWYAGTSP------------QGLFRSTDHGASW  150 (394)
T ss_dssp             EECSBCCCCCCCC----CCCCCEEEEEEECCTT-----------STTCEEEEEET------------TEEEEESSTTSBC
T ss_pred             eECCccccCCCcccccccccccceeEEEeCCCC-----------CCCEEEEEecC------------CcEEEEcCCCCCe
Confidence            987532   111  0    00111 12211100           03567765421            1466776667789


Q ss_pred             ecCCCC---CCCC------C-CCCCccceeeEEEC----CEEEEEeecccEEEEEECCCCceeecccCCCC---------
Q 016239          200 ELCPPL---PADF------R-SGYSSQYLSSALFR----GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPP---------  256 (392)
Q Consensus       200 ~~~~~~---~~~~------~-~~~~~~~~~~~~~~----g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~---------  256 (392)
                      +.+...   |...      . ..........+.++    +.||+.... +.|+..+-..++|+.+......         
T Consensus       151 ~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~  229 (394)
T 3b7f_A          151 EPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVE  229 (394)
T ss_dssp             EECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSS
T ss_pred             EECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-CCEEEECCCCCCceECCCCccccccCCCccc
Confidence            887532   1100      0 00000011233332    567775433 4578777777899987532110         


Q ss_pred             -cccceeEEee-C--CeEEEEEeecCCCCCceeEEEeecCccceEeccc-CCH
Q 016239          257 -GVMFSFLIAS-P--NMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI-MPH  304 (392)
Q Consensus       257 -~~~~~~~~~~-~--g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~-~p~  304 (392)
                       ......++.. +  +.||+..        ...||+.+....+|+.+.. +|.
T Consensus       230 ~g~~~~~i~~~~~~~~~l~vg~--------~~gl~~s~D~G~tW~~~~~~l~~  274 (394)
T 3b7f_A          230 FGHDPHCVVQHPAAPDILYQQN--------HCGIYRMDRREGVWKRIGDAMPR  274 (394)
T ss_dssp             SCBCEEEEEECSSSTTEEEEEE--------TTEEEEEETTTTEEECGGGGSCT
T ss_pred             cCcceeEEEECCCCCCEEEEEc--------CCeEEEeCCCCCcceECCCCCCC
Confidence             1112333333 2  5666643        2247888888899998864 443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.59  E-value=6.2  Score=39.24  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=39.5

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++.||+.-...+.|.+||+....-+.+............+++.++.||+....      ...|.++|+.+.
T Consensus       551 ~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~------~~~V~~~d~~~G  615 (699)
T 1n7d_A          551 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII------NEAIFSANRLTG  615 (699)
T ss_dssp             TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST------TTCEEEEETTTE
T ss_pred             CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC------CCeEEEEEccCC
Confidence            57899998777899999996543333322111111122345667889887632      345667786544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=89.53  E-value=2.2  Score=42.34  Aligned_cols=125  Identities=10%  Similarity=0.079  Sum_probs=69.2

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCC-------CcccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRP-------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~-------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      .+.++.+|.||+.+. .+.|+++|..+.  .|+.-.....       .......++..+++||+...       ...++.
T Consensus        71 ~~P~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~a  142 (677)
T 1kb0_A           71 ATPVVVDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIA  142 (677)
T ss_dssp             CCCEEETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred             eCCEEECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEE
Confidence            355678999999876 468999998766  5776433221       01122334567888887642       235777


Q ss_pred             eecCcc--ceEeccc-CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          289 VDELSM--EFSEIAI-MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       289 ~d~~~~--~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      +|..+.  .|+.-.. -+...    .       ....+-++.++++|+..+..+....-.++-+|.++++  ..|+.-
T Consensus       143 lD~~tG~~~W~~~~~~~~~~~----~-------~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~--~~W~~~  207 (677)
T 1kb0_A          143 LDAATGKEVWHQNTFEGQKGS----L-------TITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE--RKWRWF  207 (677)
T ss_dssp             EETTTCCEEEEEETTTTCCSS----C-------BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC--EEEEEE
T ss_pred             EECCCCCEEeeecCCcCcCcC----c-------ccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc--EEEEec
Confidence            787654  4875322 10000    0       0122334578888886542211111223444888776  567664

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=89.51  E-value=6.9  Score=31.87  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----cccCCC-CcccceeEEeeCC-eEEEEEeecCCCCCceeEEEeecCccce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQTLRP-PGVMFSFLIASPN-MLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~~~~~-~~~~~~~~~~~~g-~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      ++++|+|-|.  ..++||..+++-..     +...+. +....+++...++ ++|++-|        ...|+||..+++ 
T Consensus       109 ~g~~yfFkG~--~yw~yd~~~~~v~~gyPk~i~~~~gip~~idaAf~~~~~~~~YfFkg--------~~y~r~d~~~~~-  177 (196)
T 3c7x_A          109 NGKTYFFRGN--KYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKG--------NKYWKFNNQKLK-  177 (196)
T ss_dssp             TTEEEEEETT--EEEEEETTTTEECTTCSEEGGGSBTCCSSCSEEEECTTSSEEEEEET--------TEEEEEETTTTE-
T ss_pred             CCEEEEEECC--EEEEEeCCcccccCCCCccHHHCCCcCCCcceeEEecCCCEEEEEEC--------CEEEEEECCcce-
Confidence            6899999774  67999987754221     111111 1122333333244 8999864        367899987653 


Q ss_pred             EecccCCHHHHHhhc
Q 016239          297 SEIAIMPHDFLYSLV  311 (392)
Q Consensus       297 ~~~~~~p~~~~~~~~  311 (392)
                       .....|..+...|.
T Consensus       178 -v~~~yp~~i~~~w~  191 (196)
T 3c7x_A          178 -VEPGYPKSALRDWM  191 (196)
T ss_dssp             -ECTTCCEEHHHHTS
T ss_pred             -eccCCccchhhhcC
Confidence             33455655443343

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=89.36  E-value=5.3  Score=36.16  Aligned_cols=90  Identities=18%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeec-ccCCC--Ccc--cc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEV-QTLRP--PGV--MF  260 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i-~~~~~--~~~--~~  260 (392)
                      ++.+||..++.....-.....        ....+..  ++.+++.|+.++.|..||..+.+-... .....  ...  ..
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          188 TVRIWDLRTGQCSLTLSIEDG--------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             EEEEEETTTTEEEEEEECSSC--------EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             cEEEEECCCCeeEEEEEcCCC--------cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence            688889877654322111111        0222222  678888899889999999987653322 11110  111  11


Q ss_pred             eeE-EeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          261 SFL-IASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       261 ~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ..+ ...++++++.|+.++    .+.+|.+
T Consensus       260 ~~v~~~~~g~~l~s~s~d~----~v~~wd~  285 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGSLDR----SVKLWNL  285 (393)
T ss_dssp             EEEEECTTSSEEEEEETTS----EEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCC----EEEEEEC
Confidence            112 223677777776443    6888844

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=89.35  E-value=12  Score=33.73  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             EEEEEeCCCCCeecCC-CCCCCCCCCCCccceeeEEECCEEEEEe---ecccEEEEEECCCCc
Q 016239          188 AVEIYDPHSDSWELCP-PLPADFRSGYSSQYLSSALFRGRFYVFG---IYSFSVSSFDLKKHV  246 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~g~ly~~g---g~~~~i~~yd~~~~~  246 (392)
                      .+.+||..+++-...- .........     .....-++.+++.|   +..+.|..||..+..
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPHEGTRPV-----HAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSSCSSSCC-----EEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             cEEEEeCCCCceeeeeccCCCCCcce-----EEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            6889998776532211 111110111     11222367777777   567899999997754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=89.26  E-value=12  Score=33.52  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-cccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      +|++.+.|+.++.|..||..+.+-.. +..... ..-......-+|++++.|..+.    ++.||.+
T Consensus       280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~----tvrvw~i  341 (365)
T 4h5i_A          280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHS-FAITEVTISPDSTYVASVSAAN----TIHIIKL  341 (365)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTEEEEEETTSSS-SCEEEEEECTTSCEEEEEETTS----EEEEEEC
T ss_pred             CCCceEEEcCCCEEEEEECCCCcEEEEecCccc-CCEEEEEECCCCCEEEEEeCCC----eEEEEEc
Confidence            78888899999999999998765321 111111 1111222334888888876554    7999955

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=89.19  E-value=4.1  Score=35.66  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=40.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECC-EEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRG-RFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g-~ly~~gg~~~~i~~yd~  242 (392)
                      ++++|+.++.           ...+.++|..+++....-..+.....      ...+. -+| .+|+.+...+.|..||+
T Consensus        10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~~~~------~~~~~s~dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B           10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCVMPDKFGP------GTAMMAPDNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             TCEEEEEEET-----------TTEEEEEETTTTEEEEEEECSSCCSS------CEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEecCCCCCC------ceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence            6778887654           22688999888764322122220011      22232 245 57888776789999999


Q ss_pred             CCCcee
Q 016239          243 KKHVWS  248 (392)
Q Consensus       243 ~~~~W~  248 (392)
                      .+.+-.
T Consensus        73 ~t~~~~   78 (349)
T 1jmx_B           73 DTCKNT   78 (349)
T ss_dssp             TTTEEE
T ss_pred             CCCcEE
Confidence            887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=88.97  E-value=2.7  Score=41.76  Aligned_cols=126  Identities=13%  Similarity=0.051  Sum_probs=68.6

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCC-------CcccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRP-------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~-------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      .+.++.+++||+.+. .+.|+++|..++  .|+.-.....       +.......++.+++||+...       ...++.
T Consensus        64 ~~P~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~A  135 (689)
T 1yiq_A           64 ATPIVVDGVMYTTGP-FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEA  135 (689)
T ss_dssp             CCCEEETTEEEEECG-GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred             ecCEEECCEEEEEcC-CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEE
Confidence            455678999999765 457999998765  6876432221       01112234566888887542       235667


Q ss_pred             eecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeeec
Q 016239          289 VDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRL  363 (392)
Q Consensus       289 ~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~~  363 (392)
                      +|..+.  .|+.-.......   .+       ....+.++.++++|+-.+.......-.++-+|.+|++  ..|+.-
T Consensus       136 lDa~TG~~~W~~~~~~~~~~---~~-------~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~--~~W~~~  200 (689)
T 1yiq_A          136 IDAKTGQRAWSVDTRADHKR---SY-------TITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK--EAWRFY  200 (689)
T ss_dssp             EETTTCCEEEEEECCSCTTS---CC-------BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC--EEEEEE
T ss_pred             EECCCCCEeeeecCcCCCCC---Cc-------cccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc--EEEEec
Confidence            787654  487543211110   00       1122345678998885432111112233444888877  568753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.97  E-value=5  Score=38.82  Aligned_cols=111  Identities=10%  Similarity=0.085  Sum_probs=66.6

Q ss_pred             EEeecceEEeecC----cceEec-CCcC--ceeecCCCCcC--------ccCceEEEEEcCCCCcccccCCcccCCCeEE
Q 016239          105 FIGANGFFFTTTP----RFGFSR-ILNT--SWHLTSPLRFS--------RINPLVGVFYDHDRGHCDLASGFACNLPKFI  169 (392)
Q Consensus       105 ~~~~~g~i~v~gg----~~~ynp-~~~~--~W~~~~~~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  169 (392)
                      .++.++.||+...    ++.+|. . ++  .|+.-......        ....+.++.                 ++++|
T Consensus        58 P~v~~g~vyv~~~~~~~v~AlD~~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~  119 (571)
T 2ad6_A           58 PLVIGDMMYVHSAFPNNTYALNLND-PGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-----------------AGQIV  119 (571)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTC-TTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-----------------TTEEE
T ss_pred             cEEECCEEEEEeCCCCEEEEEeCCC-CccEEEEEcCCCCccccccccccccccccEEE-----------------CCEEE
Confidence            3556899999865    478898 6 44  78764333211        011233445                 88888


Q ss_pred             EEeceeecCcccccccceEEEEEeCCCC--CeecCCCC-CCCCCCCCCccceeeEEECCEEEEEeec-----ccEEEEEE
Q 016239          170 VVGGVRFIGGLVDIEDRLAVEIYDPHSD--SWELCPPL-PADFRSGYSSQYLSSALFRGRFYVFGIY-----SFSVSSFD  241 (392)
Q Consensus       170 v~gG~~~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----~~~i~~yd  241 (392)
                      +....            ..+..+|..++  .|+.-..- +.....     ..+.++.++++|+-...     .+.|.+||
T Consensus       120 v~~~d------------g~l~alD~~tG~~~W~~~~~~~~~~~~~-----~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D  182 (571)
T 2ad6_A          120 KKQAN------------GHLLALDAKTGKINWEVEVCDPKVGSTL-----TQAPFVAKDTVLMGCSGAELGVRGAVNAFD  182 (571)
T ss_dssp             EECTT------------SEEEEEETTTCCEEEEEECCCGGGTCBC-----CSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred             EEeCC------------CEEEEEECCCCCEEEEecCCCCCcccee-----ccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence            87432            15888898776  48753221 111011     13455679999886542     47899999


Q ss_pred             CCCC--ceeec
Q 016239          242 LKKH--VWSEV  250 (392)
Q Consensus       242 ~~~~--~W~~i  250 (392)
                      ..+.  .|+.-
T Consensus       183 ~~tG~~~W~~~  193 (571)
T 2ad6_A          183 LKTGELKWRAF  193 (571)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCcEEEEEc
Confidence            9765  57653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.94  E-value=1.3  Score=40.10  Aligned_cols=50  Identities=16%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCC--ceee
Q 016239          188 AVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSE  249 (392)
Q Consensus       188 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~  249 (392)
                      .+..+|..+++  |+.-..-  ..+.       +  -.++.+|+ |+..+.|.++|+.++  .|+.
T Consensus       103 ~v~a~D~~tG~~~w~~~~~~--~~~~-------~--p~~~~v~~-~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          103 IWYVIDLLTGEKQQTLSSAF--ADSL-------S--PSTSLLYL-GRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             EEEEECCC---------------------------------EEE-EEEEEEEECCCSSSSSCCCEE
T ss_pred             EEEEEECCCCcEEEEecCCC--cccc-------c--ccCCEEEE-EecCCEEEEEECCCCCEEEeE
Confidence            58888887654  6543221  1011       1  13455554 555678999998766  4764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.88  E-value=13  Score=33.41  Aligned_cols=96  Identities=15%  Similarity=0.174  Sum_probs=50.2

Q ss_pred             EEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEEE---CCEEEEEeecccEEEEEECCCCceeecccCCCC-cccce
Q 016239          188 AVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSALF---RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPP-GVMFS  261 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~---~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~-~~~~~  261 (392)
                      ++.+||..++.-...-  ..+.. ...   . ...+.+   ++.+++.|+.++.|..||+.... ..+...... .....
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~-h~~---~-v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~  254 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSG-HTA---D-VLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINS  254 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSS-CCS---C-EEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCE
T ss_pred             cEEEEEcCCCcEEEEeecccCCC-Ccc---C-eEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEE
Confidence            5888898876543221  11111 110   0 122222   57888999999999999986321 111111111 11112


Q ss_pred             eEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          262 FLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       262 ~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      .....+++.++.|+.++    .+.+|  |..+..
T Consensus       255 v~~~p~~~~l~s~s~D~----~i~lw--d~~~~~  282 (380)
T 3iz6_a          255 VKFFPDGQRFGTGSDDG----TCRLF--DMRTGH  282 (380)
T ss_dssp             EEECTTSSEEEEECSSS----CEEEE--ETTTTE
T ss_pred             EEEecCCCeEEEEcCCC----eEEEE--ECCCCc
Confidence            22233777777776543    68888  665543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=88.84  E-value=8.6  Score=33.36  Aligned_cols=63  Identities=11%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCc-eeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc-ceE
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV-WSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM-EFS  297 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~-W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~-~W~  297 (392)
                      +|.||+. ...+.+.+||...+. |..-.. ..  .....++..++.||+...       ...++++|++.. .|.
T Consensus       225 ~g~l~v~-t~~~gl~~~~~~g~~~~~~~~~-~~--~~~~~~~~~~g~l~v~t~-------~ggl~~~d~~g~~~~~  289 (330)
T 3hxj_A          225 DGTIYVT-SLDGHLYAINPDGTEKWRFKTG-KR--IESSPVIGNTDTIYFGSY-------DGHLYAINPDGTEKWN  289 (330)
T ss_dssp             TSCEEEE-ETTTEEEEECTTSCEEEEEECS-SC--CCSCCEECTTSCEEEECT-------TCEEEEECTTSCEEEE
T ss_pred             CCeEEEE-cCCCeEEEECCCCCEeEEeeCC-CC--ccccceEcCCCeEEEecC-------CCCEEEECCCCcEEEE
Confidence            4577764 445689999875543 443221 11  111222333788887532       235777787433 354

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.79  E-value=12  Score=33.00  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=84.1

Q ss_pred             CCceeeCCCCC-CCCCcceEEe-ecceEEeecCc-ceEecC-CcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcc
Q 016239           87 SNSWFHLPPAQ-EPRAGSCFIG-ANGFFFTTTPR-FGFSRI-LNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFA  162 (392)
Q Consensus        87 ~~~W~~~~~~~-~~r~~~~~~~-~~g~i~v~gg~-~~ynp~-~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  162 (392)
                      ..+|..+.... .+-..+.++. .++.+|+.+.. .+|-.. -..+|+.+...... .-+.+...  .            
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~-~~~~~~~~--~------------  172 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIG-VMRNLNRS--P------------  172 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCC-CEEEEEEC--T------------
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCc-ceEEEEEc--C------------
Confidence            56798875432 2222233443 36777777532 223221 13589887543221 12222222  1            


Q ss_pred             cCCCeEEEEeceeecCcccccccceEEEEE-eCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEE
Q 016239          163 CNLPKFIVVGGVRFIGGLVDIEDRLAVEIY-DPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       163 ~~~~~iyv~gG~~~~~~~~~~~~~~~~~~y-d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~y  240 (392)
                        ++.++++|..        +    .+..- |....+|+.+.. +.. ..     ....+. -++.+|+.+. .+.++..
T Consensus       173 --~~~~~~~g~~--------G----~~~~S~d~gG~tW~~~~~-~~~-~~-----~~~~~~~~~g~~~~~~~-~G~~~~s  230 (327)
T 2xbg_A          173 --SGEYVAVSSR--------G----SFYSTWEPGQTAWEPHNR-TTS-RR-----LHNMGFTPDGRLWMIVN-GGKIAFS  230 (327)
T ss_dssp             --TSCEEEEETT--------S----SEEEEECTTCSSCEEEEC-CSS-SC-----EEEEEECTTSCEEEEET-TTEEEEE
T ss_pred             --CCcEEEEECC--------C----cEEEEeCCCCCceeECCC-CCC-Cc-----cceeEECCCCCEEEEeC-CceEEEe
Confidence              5567766532        0    12222 333578988743 222 11     133332 2577887654 4556665


Q ss_pred             ECC-CCceeecccC-CCCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          241 DLK-KHVWSEVQTL-RPPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       241 d~~-~~~W~~i~~~-~~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      +.. -.+|+.+..+ .+.......++. -++.+|++|..       ..+++-.-...+|+.+..
T Consensus       231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-------GALLCSQDGGQTWQQDVD  287 (327)
T ss_dssp             ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-------TCEEEESSTTSSCEECGG
T ss_pred             cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-------CeEEEeCCCCcccEEcCc
Confidence            432 5689987654 122222233332 26788888752       234443345678998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=88.76  E-value=13  Score=35.40  Aligned_cols=91  Identities=10%  Similarity=0.056  Sum_probs=49.9

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA  265 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~  265 (392)
                      .+.+||..++.... ..+... ...     ...+.+  ++.+.+.|+..+.|..||..+.+-...-..............
T Consensus       468 ~i~~~~~~~~~~~~-~~~~~~-~~~-----v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s  540 (615)
T 1pgu_A          468 TIQVFKLSDLEVSF-DLKTPL-RAK-----PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK  540 (615)
T ss_dssp             CEEEEETTEEEEEE-ECSSCC-SSC-----EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred             eEEEEECCCccccc-cccCCc-cCc-----eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc
Confidence            57888887665432 111111 111     233334  788888898889999999987654322111011111122223


Q ss_pred             e----------CCeEEEEEeecCCCCCceeEEEe
Q 016239          266 S----------PNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       266 ~----------~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      .          ++++++.|+.++    .+.+|.+
T Consensus       541 p~~~~~~~~~~~~~~l~~~~~dg----~i~iw~~  570 (615)
T 1pgu_A          541 PAEKGANEEEIEEDLVATGSLDT----NIFIYSV  570 (615)
T ss_dssp             CCC------CCSCCEEEEEETTS----CEEEEES
T ss_pred             CccccccccccCCCEEEEEcCCC----cEEEEEC
Confidence            3          678888776543    6788844

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=88.72  E-value=9.4  Score=34.04  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-----CCEEEEEeecccEEEEEECCCCceeecccCCCCccccee
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-----RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSF  262 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~  262 (392)
                      .+.+||..++.-...-..+..         ...+.+     ++.+.+.|+..+.|..||+.+.+-...  ..........
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~v~~  191 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNFEET---------VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILA  191 (408)
T ss_dssp             EEEEEETTTTEEEEEEECSSC---------EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--ECCCCSCEEE
T ss_pred             eEEEeeCCCCccceeccCCCc---------eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--ecCCCCcEEE
Confidence            688888877654333222221         111111     345788888888999999987643222  1111111122


Q ss_pred             EEee-CCe-EEEEEeecCCCCCceeEEEe
Q 016239          263 LIAS-PNM-LVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       263 ~~~~-~g~-l~v~gg~~~~~~~~~~v~~~  289 (392)
                      +... ++. +++.|+.++    .+.+|.+
T Consensus       192 ~~~~~~~~~ll~~~~~dg----~i~i~d~  216 (408)
T 4a11_B          192 VSWSPRYDYILATASADS----RVKLWDV  216 (408)
T ss_dssp             EEECSSCTTEEEEEETTS----CEEEEET
T ss_pred             EEECCCCCcEEEEEcCCC----cEEEEEC
Confidence            2222 444 677775443    5777743

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.40  E-value=4.3  Score=39.57  Aligned_cols=126  Identities=7%  Similarity=0.078  Sum_probs=67.6

Q ss_pred             eeeEEECCEEEEEeecccEEEEEEC-CCC--ceeecccCCC-------CcccceeEEe--eCCe----EEEEEeecCCCC
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDL-KKH--VWSEVQTLRP-------PGVMFSFLIA--SPNM----LVLAGMCNAPRG  281 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~-~~~--~W~~i~~~~~-------~~~~~~~~~~--~~g~----l~v~gg~~~~~~  281 (392)
                      .+.++.++.||+.+...+.|+++|. .+.  .|+.-.....       +......+++  .+++    ||+...      
T Consensus        56 ~tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------  129 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------  129 (599)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred             eccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------
Confidence            4567789999998764578999998 665  6876433221       0011122344  5676    877532      


Q ss_pred             CceeEEEeecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCcccee
Q 016239          282 PSFNLWKVDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCS  359 (392)
Q Consensus       282 ~~~~v~~~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~  359 (392)
                       ...++.+|..+.  .|+.-..-+...    +.       ...+-++.+++||+-.+.......-.++-+|.++++  ..
T Consensus       130 -dg~l~AlDa~TG~~~W~~~~~~~~~~----~~-------~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~--~~  195 (599)
T 1w6s_A          130 -DGNVAALNAETGETVWKVENSDIKVG----ST-------LTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE--QV  195 (599)
T ss_dssp             -TSEEEEEETTTCCEEEEEECCCGGGT----CB-------CCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC--EE
T ss_pred             -CCEEEEEECCCCCEEEeecCCCCCcc----ce-------eecCCEEECCEEEEEecccccCCCCeEEEEECCCCc--EE
Confidence             245777787554  387532211110    00       112334568888875421111111233444888776  56


Q ss_pred             eeec
Q 016239          360 WRRL  363 (392)
Q Consensus       360 W~~~  363 (392)
                      |+.-
T Consensus       196 W~~~  199 (599)
T 1w6s_A          196 WRAY  199 (599)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=88.33  E-value=12  Score=32.68  Aligned_cols=107  Identities=9%  Similarity=-0.088  Sum_probs=59.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+|+....          ....++++++....-+.+.....  ..     ..+.+.-  ++.||+.-...+.|.++|+
T Consensus       131 ~g~ly~~d~~----------~~~~I~~~~~dG~~~~~~~~~~~--~~-----P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          131 HGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENI--QW-----PNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             TTEEEEEECS----------SSCEEEEEETTSCCEEEEECSSC--SC-----EEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEccC----------CCCeEEEEcCCCCCeEEEEECCC--CC-----ceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            6788887421          12368888875433332211111  11     1344443  5899999877789999998


Q ss_pred             CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ....-+.+............+++.++.||+....      ...|.++|+.+.
T Consensus       194 dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~------~~~V~~~~~~~g  239 (316)
T 1ijq_A          194 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII------NEAIFSANRLTG  239 (316)
T ss_dssp             TSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT------TTEEEEEETTTC
T ss_pred             CCCceEEEeecCCccCCcEEEEEECCEEEEEECC------CCeEEEEeCCCC
Confidence            7543333322111111123455578999987632      346777776443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.18  E-value=0.67  Score=42.15  Aligned_cols=63  Identities=10%  Similarity=-0.013  Sum_probs=34.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+|+....            ..+..+|..+++  |+.-.   .+..       ...+..++.+|+.++..+.|+++|.
T Consensus         9 ~~~v~~gs~d------------g~v~a~d~~tG~~~W~~~~---~~~~-------s~p~~~~g~~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            9 ETLLFVSTLD------------GSLHAVSKRTGSIKWTLKE---DPVL-------QVPTHVEEPAFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             TTEEEEEETT------------SEEEEEETTTCCEEEEEEC---CCSC-------CCC-----CCEEECTTTCCEEEC--
T ss_pred             CCEEEEEcCC------------CEEEEEECCCCCEEEEecC---CCce-------ecceEcCCCEEEEeCCCCEEEEEEC
Confidence            6677766432            158888877664  77543   1111       2345567888888777789999998


Q ss_pred             CCC--ceee
Q 016239          243 KKH--VWSE  249 (392)
Q Consensus       243 ~~~--~W~~  249 (392)
                      +++  .|+.
T Consensus        67 ~tG~~~w~~   75 (369)
T 2hz6_A           67 KNNEGLTKL   75 (369)
T ss_dssp             ---CCSEEC
T ss_pred             CCCceeeee
Confidence            654  4554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=87.97  E-value=12  Score=32.02  Aligned_cols=100  Identities=12%  Similarity=0.114  Sum_probs=52.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      +++.++.|+.+           ..+.+||..+++-...-....   ..     ......++.+.+.|+..+.+..++..+
T Consensus        78 ~~~~l~sgs~D-----------g~v~iw~~~~~~~~~~~~~h~---~~-----~~~~~~~~~~l~s~~~~~~~~~~~~~~  138 (318)
T 4ggc_A           78 EGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMTSHS---AR-----VGSLSWNSYILSSGSRSGHIHHHDVRV  138 (318)
T ss_dssp             TSSEEEEEETT-----------SEEEEEETTTTEEEEEEECCS---SC-----EEEEEEETTEEEEEETTSEEEEEETTS
T ss_pred             CCCEEEEEECC-----------CcEEEeecCCceeEEEecCcc---ce-----EEEeecCCCEEEEEecCCceEeeecCC
Confidence            56777777652           268888887765322211111   11     334455667777787777888887766


Q ss_pred             CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEE
Q 016239          245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                      ......................++++++.++.++    .+.+|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iw  177 (318)
T 4ggc_A          139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN----LVNVW  177 (318)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS----CEEEE
T ss_pred             CceeEEEEcCccCceEEEEEcCCCCEEEEEecCc----ceeEE
Confidence            5433221111111112222334666666665433    56666

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=87.77  E-value=23  Score=34.99  Aligned_cols=103  Identities=6%  Similarity=0.012  Sum_probs=51.8

Q ss_pred             EEEEEeCCC-CCeecCCCCCCCCCCCCCccceeeEEECCE-EEEEee----cccEEEEEECCCCceeecccCCCCc---c
Q 016239          188 AVEIYDPHS-DSWELCPPLPADFRSGYSSQYLSSALFRGR-FYVFGI----YSFSVSSFDLKKHVWSEVQTLRPPG---V  258 (392)
Q Consensus       188 ~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~-ly~~gg----~~~~i~~yd~~~~~W~~i~~~~~~~---~  258 (392)
                      .+.++|..+ ++-..+...... ..    .....+.-+|+ |++...    ....|+.+|+.+.+...+.......   .
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~-~~----~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQ-DI----YLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCS-SE----EEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             EEEEEECCCCCceEEecCCCCc-ce----EEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence            678888877 664443221010 00    00111113444 444432    2357999999988766653322111   1


Q ss_pred             cceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          259 MFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       259 ~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      .......-+|++++.+..+.    ...+|.+|..+. .+.+.
T Consensus       339 ~~~~~~spdg~~~~~~~~~g----~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTG----FQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTS----SCEEEEECSSSC-EEESC
T ss_pred             CCceEECCCCeEEEEecCCC----ccEEEEEcCCCC-eeeee
Confidence            11222344778665553221    578998887655 55443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=87.69  E-value=13  Score=32.15  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++++++.|+.+           ..+.+||..+..  .+..+... ..     ........+..++.++..+.|..||..+
T Consensus       226 ~~~~l~s~s~D-----------g~i~iwd~~~~~--~~~~~~~~-~~-----v~~~~~~~~~~~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          226 DGSLCASGGKD-----------GQAMLWDLNEGK--HLYTLDGG-DI-----INALCFSPNRYWLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             TSSEEEEEETT-----------CEEEEEETTTTE--EEEEEECS-SC-----EEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             CCCEEEEEeCC-----------CeEEEEEeccCc--eeeeecCC-ce-----EEeeecCCCCceeeccCCCEEEEEECCC
Confidence            56677776642           257888876543  22211111 11     1223333444556677778999999887


Q ss_pred             Cceeec-ccCCC------CcccceeE-EeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          245 HVWSEV-QTLRP------PGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       245 ~~W~~i-~~~~~------~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ..-... .....      .......+ ...++++++.|+.++    .+.||.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----~v~iW~~  335 (340)
T 4aow_A          287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN----LVRVWQV  335 (340)
T ss_dssp             TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS----CEEEEEE
T ss_pred             CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeC
Confidence            643221 11110      01111112 233777777776543    6888844

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=87.66  E-value=12  Score=31.80  Aligned_cols=62  Identities=6%  Similarity=0.061  Sum_probs=32.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++..++.++..+.|..||..+.. ..+..... ..........++. ++.++.++    .+.+|  |..+.
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~-~~i~~~~~~~~~~-~~~~~~dg----~i~i~--d~~~~  215 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQNDKVI-KTFSGIHN-DVVRHLAVVDDGH-FISCSNDG----LIKLV--DMHTG  215 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETTEEE-EEECSSCS-SCEEEEEEEETTE-EEEEETTS----EEEEE--ETTTC
T ss_pred             CCCEEEEEECCCCEEEEecCceE-EEEeccCc-ccEEEEEEcCCCe-EEEccCCC----eEEEE--ECCch
Confidence            67788888888899999943322 22221111 1112222334667 55554332    56677  65543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=87.52  E-value=5.8  Score=38.50  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCCC-----cccceeEEeeCCeEEEEEeecCCCCCceeEEEee
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRPP-----GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~~-----~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      .+.++.++++|+.+...+ |+++|.++.  .|+.-...+..     .......+..+++||+...       ...++.+|
T Consensus        62 ~~P~v~~g~vyv~~~~~~-v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD  133 (582)
T 1flg_A           62 SQAIVSDGVIYVTASYSR-LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALN  133 (582)
T ss_dssp             CCCEEETTEEEEEETTTE-EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEE
T ss_pred             eccEEECCEEEEEcCCCC-EEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEEE
Confidence            355778999999876444 999998765  68764332221     0111233567888887542       23577778


Q ss_pred             cCcc--ceEec
Q 016239          291 ELSM--EFSEI  299 (392)
Q Consensus       291 ~~~~--~W~~~  299 (392)
                      ..+.  .|+.-
T Consensus       134 ~~TG~~~W~~~  144 (582)
T 1flg_A          134 KNTGKVVWKKK  144 (582)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCCCEEeeec
Confidence            7654  48753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=87.40  E-value=15  Score=32.64  Aligned_cols=23  Identities=9%  Similarity=0.106  Sum_probs=18.7

Q ss_pred             CCEEEEEeecc---cEEEEEECCCCc
Q 016239          224 RGRFYVFGIYS---FSVSSFDLKKHV  246 (392)
Q Consensus       224 ~g~ly~~gg~~---~~i~~yd~~~~~  246 (392)
                      ++.+++.|+..   +.|..||..+.+
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFGE  269 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCc
Confidence            57777888877   899999997764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=87.30  E-value=26  Score=35.28  Aligned_cols=104  Identities=9%  Similarity=-0.097  Sum_probs=57.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.||+.--.          ....+++.+.....-+.+..-..  ..     ..+.++-  ++.|||.-...+.|.++|+
T Consensus       525 ~g~LYwtD~g----------~~~~I~~~~~dG~~~~~lv~~~l--~~-----P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          525 HGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENI--QW-----PNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             TTEEEEEECS----------SSCEEEEEETTSCCEEEEECSSC--SC-----EEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCEEEecCC----------CCCeEEEEecCCCceEEEEeCCC--CC-----ceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            6789987411          12368888775543333321111  11     1333333  6899999877789999998


Q ss_pred             CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeec
Q 016239          243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      ....=..+...........++++.+++||+....      ...|++.|.
T Consensus       588 dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~------~~~I~~~dk  630 (791)
T 3m0c_C          588 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII------NEAIFSANR  630 (791)
T ss_dssp             TSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT------TTEEEEEET
T ss_pred             CCCceEEEecCCCccCCCCEEEEeCCEEEEEECC------CCEEEEEeC
Confidence            6543333322111111223456678999988632      345666654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=87.01  E-value=8.4  Score=36.91  Aligned_cols=52  Identities=6%  Similarity=-0.093  Sum_probs=29.2

Q ss_pred             EEEEEeC--CCCCeecCCCCCCCCCCCCCccceeeEEE-----CC-EEEEEeecccEEEEEECCCCce
Q 016239          188 AVEIYDP--HSDSWELCPPLPADFRSGYSSQYLSSALF-----RG-RFYVFGIYSFSVSSFDLKKHVW  247 (392)
Q Consensus       188 ~~~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~g-~ly~~gg~~~~i~~yd~~~~~W  247 (392)
                      ++.+||.  .+.+  .+..++.. ..     ....++.     +| .+|+.+...+.|..+|..+.+-
T Consensus       201 ~V~v~D~~~~t~~--~~~~i~~g-~~-----p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          201 RIDMIDLWAKEPT--KVAEIKIG-IE-----ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEEEETTSSSCE--EEEEEECC-SE-----EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             eEEEEECcCCCCc--EEEEEecC-CC-----cceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            6889998  4443  33333222 11     1233332     45 4666555568899999877653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=86.90  E-value=18  Score=33.00  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             EEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee-CC-eEEEEEeecCCCCCceeEEEee
Q 016239          226 RFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS-PN-MLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       226 ~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      .+++.|+..+.|..||..+.. ..+............+... ++ .+++.++.++    .+.+|.+.
T Consensus       291 ~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~----~i~iwd~~  352 (430)
T 2xyi_A          291 FILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDR----RLHVWDLS  352 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTS----CCEEEEGG
T ss_pred             CEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC----cEEEEeCC
Confidence            488889989999999997632 1111111111111122222 34 5677776443    68888443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=86.71  E-value=14  Score=31.44  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             eeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEE
Q 016239          219 SSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       219 ~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                      ..+..++.+++.|+..+.|..||..........  .............++.+++.++.++    .+.+|
T Consensus       108 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~----~i~i~  170 (313)
T 3odt_A          108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQA--HNASVWDAKVVSFSENKFLTASADK----TIKLW  170 (313)
T ss_dssp             EEEEEETTEEEEEETTSEEEEEETTEEEEEEEC--CSSCEEEEEEEETTTTEEEEEETTS----CEEEE
T ss_pred             EEEEecCCEEEEEeCCCCEEEEcCCcEEEeccc--CCCceeEEEEccCCCCEEEEEECCC----CEEEE
Confidence            344457778888888899999993332222211  1111111111222677777765433    57777

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=86.59  E-value=9.4  Score=37.85  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=66.3

Q ss_pred             EEeecceEEeecC---cceEecCCcC--ceeecCCCCcC--------ccCceEEEEEcCCCCcccccCCcccCCCeEEEE
Q 016239          105 FIGANGFFFTTTP---RFGFSRILNT--SWHLTSPLRFS--------RINPLVGVFYDHDRGHCDLASGFACNLPKFIVV  171 (392)
Q Consensus       105 ~~~~~g~i~v~gg---~~~ynp~~~~--~W~~~~~~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~  171 (392)
                      .++.++.||+.+.   ++.+|.. ++  .|+.-...+..        ....+.++.                 +++||+.
T Consensus        66 P~v~~g~vyv~~~~~~v~AlD~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~g~v~v~  127 (689)
T 1yiq_A           66 PIVVDGVMYTTGPFSVVYALDAR-DGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-----------------KGKVYVG  127 (689)
T ss_dssp             CEEETTEEEEECGGGCEEEEETT-TCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-----------------TTEEEEE
T ss_pred             CEEECCEEEEEcCCCeEEEEECC-CCceeEEEcCCCCccccccccccCCCCccEEE-----------------CCEEEEE
Confidence            3456899998754   4788887 44  68754433211        011223444                 7888886


Q ss_pred             eceeecCcccccccceEEEEEeCCCCC--eecCCC-CCC-CCCCCCCccceeeEEECCEEEEEee-----cccEEEEEEC
Q 016239          172 GGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPP-LPA-DFRSGYSSQYLSSALFRGRFYVFGI-----YSFSVSSFDL  242 (392)
Q Consensus       172 gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~~~-~~~~~~~~~~~~~~~~~g~ly~~gg-----~~~~i~~yd~  242 (392)
                      ...            ..+..+|..+++  |+.-.. -+. ....     ..+.++.++.+|+-.+     ..+.|.+||.
T Consensus       128 ~~d------------g~l~AlDa~TG~~~W~~~~~~~~~~~~~~-----~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~  190 (689)
T 1yiq_A          128 VLD------------GRLEAIDAKTGQRAWSVDTRADHKRSYTI-----TGAPRVVNGKVVIGNGGAEFGVRGYVTAYDA  190 (689)
T ss_dssp             CTT------------SEEEEEETTTCCEEEEEECCSCTTSCCBC-----CSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred             ccC------------CEEEEEECCCCCEeeeecCcCCCCCCccc-----cCCcEEECCEEEEEeCCCccCCCCEEEEEEC
Confidence            432            157888887764  876542 111 1111     1355677999988543     2468999999


Q ss_pred             CCCc--eeec
Q 016239          243 KKHV--WSEV  250 (392)
Q Consensus       243 ~~~~--W~~i  250 (392)
                      .+.+  |+.-
T Consensus       191 ~tG~~~W~~~  200 (689)
T 1yiq_A          191 ETGKEAWRFY  200 (689)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEec
Confidence            8774  7653

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=86.51  E-value=13  Score=31.06  Aligned_cols=76  Identities=9%  Similarity=-0.067  Sum_probs=43.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee----cc-cCCCC-----cccceeEEe--eCCeEEEEEeecCCCCCceeEEEeec
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE----VQ-TLRPP-----GVMFSFLIA--SPNMLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~----i~-~~~~~-----~~~~~~~~~--~~g~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      ++++|+|-|.  ..++||..+++...    |. ..+..     .....+++.  .++++|++-|        ...|+||.
T Consensus       127 ~gk~yfFkG~--~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--------~~ywr~d~  196 (225)
T 3oyo_A          127 GKEVYLFKGN--KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG--------QNYVRIDF  196 (225)
T ss_dssp             TTEEEEEETT--EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET--------TEEEEEEC
T ss_pred             CCcEEEEeCC--eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeC
Confidence            6899999874  78999977665443    11 11111     112223344  4799999874        36889998


Q ss_pred             Ccc--ceEecccCCHHHHHhh
Q 016239          292 LSM--EFSEIAIMPHDFLYSL  310 (392)
Q Consensus       292 ~~~--~W~~~~~~p~~~~~~~  310 (392)
                      .+.  .=+.+.. |..+...|
T Consensus       197 ~~g~~~~~~~~g-Pk~i~~~w  216 (225)
T 3oyo_A          197 TPGGKADTLVGN-IRPILDGW  216 (225)
T ss_dssp             CTTCGGGCEECC-CEEHHHHS
T ss_pred             CcCCccceecCC-ceEhhHcC
Confidence            722  2233444 55444333

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=86.50  E-value=15  Score=31.71  Aligned_cols=63  Identities=10%  Similarity=-0.029  Sum_probs=41.7

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CC-EEEEEeecccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RG-RFYVFGIYSFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~~i~~yd  241 (392)
                      ++.+|+....           ...+.++|..+++....-..+..        .. .+.+  +| .+|+.+...+.|..+|
T Consensus         9 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~--------~~-~~~~s~dg~~l~~~~~~~~~i~~~d   68 (331)
T 3u4y_A            9 SNFGIVVEQH-----------LRRISFFSTDTLEILNQITLGYD--------FV-DTAITSDCSNVVVTSDFCQTLVQIE   68 (331)
T ss_dssp             CCEEEEEEGG-----------GTEEEEEETTTCCEEEEEECCCC--------EE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred             CCEEEEEecC-----------CCeEEEEeCcccceeeeEEccCC--------cc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence            6778887654           22789999988877544332221        13 3333  45 4887777678999999


Q ss_pred             CCCCce
Q 016239          242 LKKHVW  247 (392)
Q Consensus       242 ~~~~~W  247 (392)
                      +.+++.
T Consensus        69 ~~~~~~   74 (331)
T 3u4y_A           69 TQLEPP   74 (331)
T ss_dssp             CSSSSC
T ss_pred             CCCCce
Confidence            988874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=86.18  E-value=13  Score=35.94  Aligned_cols=53  Identities=8%  Similarity=-0.122  Sum_probs=31.1

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-----CC-EEEEEeecccEEEEEECCCCc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-----RG-RFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~g-~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      .+.+||..+.+-+.+..++.. ..     ....++.     +| .+|+.....+.+..+|..+.+
T Consensus       219 ~V~viD~~~~t~~~v~~i~~G-~~-----P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          219 KVNMIDLWMKEPTTVAEIKIG-SE-----ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EEEEEETTSSSCCEEEEEECC-SE-----EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             eEEEEECCCCCCcEeEEEecC-CC-----CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            688999852233444333332 11     1233333     45 688887777899999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=86.14  E-value=9.8  Score=40.34  Aligned_cols=92  Identities=8%  Similarity=0.018  Sum_probs=48.5

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcc-cceeEEee
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGV-MFSFLIAS  266 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~-~~~~~~~~  266 (392)
                      .+.+||..+++-...-..... ...     ..+..-++..++.|+.++.|..||..+.+-  +........ ........
T Consensus      1066 ~v~vwd~~~~~~~~~~~~~~~-~v~-----~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A         1066 TVKVWNVITGRIERDFTCHQG-TVL-----SCAISSDATKFSSTSADKTAKIWSFDLLSP--LHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp             EEEEEETTTTCCCEEEECCSS-CCC-----CEEECSSSSSCEEECCSSCCCEECSSSSSC--SBCCCCCSSCEEEEEECS
T ss_pred             cEEEEECCCCceeEEEcccCC-cEE-----EEEECCCCCEEEEEcCCCcEEEEECCCcce--eeeeccCCCcEEEEEECC
Confidence            688888877653211110111 110     122223677778888888899999876542  222221111 11222334


Q ss_pred             CCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          267 PNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       267 ~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ++++++.|+.++    .+.+|  |..+
T Consensus      1138 dg~~lat~~~dg----~i~vw--d~~~ 1158 (1249)
T 3sfz_A         1138 DGILLATGDDNG----EIRIW--NVSD 1158 (1249)
T ss_dssp             SSSEEEEEETTS----CCCEE--ESSS
T ss_pred             CCCEEEEEeCCC----EEEEE--ECCC
Confidence            788888776443    57888  5444

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=86.13  E-value=22  Score=33.15  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=38.9

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----cc-cCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQ-TLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~-~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      ++++|+|-|  +..++||..+++-..     |. ..+.......+++..+|++|++-|        ...|+||..+.+=
T Consensus       367 ~~k~yfFkG--~~yw~yd~~~~~~~~gYPk~I~~~fpgip~~iDAA~~~~g~~YFFkg--------~~ywr~d~~~~~v  435 (450)
T 1su3_A          367 TGKTYFFVA--NKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHG--------TRQYKFDPKTKRI  435 (450)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEECSSCSEEHHHHSTTSCSCCSEEEEETTEEEEEET--------TEEEEEETTTTEE
T ss_pred             CCeEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCCCCCccEEEEcCCeEEEEeC--------CEEEEEECCcceE
Confidence            589999987  478999987543221     21 111111122233456899999864        3578998876653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=86.05  E-value=26  Score=33.98  Aligned_cols=122  Identities=11%  Similarity=0.017  Sum_probs=67.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCC-CccceeeEEE-CCEEEEEeec-ccEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGY-SSQYLSSALF-RGRFYVFGIY-SFSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~-~g~ly~~gg~-~~~i~~yd  241 (392)
                      ++++|+.+..+         ....++.+|..+++++.+........... +......+.. ++.+++.+.. ...|+.+|
T Consensus       252 dg~l~~~~~~~---------~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  322 (662)
T 3azo_A          252 DGSLIVATDRT---------GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILD  322 (662)
T ss_dssp             TSCEEEEECTT---------SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEE
T ss_pred             CCeEEEEECCC---------CCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEE
Confidence            55677665431         12378899988888887754322110000 0000122332 6777776654 23677889


Q ss_pred             CCCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          242 LKKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       242 ~~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                      ..+++.+.+.....   ....+ ...++.++++.....   ....+|.+|..+.+.+.+..
T Consensus       323 ~~~~~~~~l~~~~~---~~~~~~s~~~~~~~~~~~~~~---~~~~i~~~d~~~g~~~~l~~  377 (662)
T 3azo_A          323 PESGELVDAAGPWT---EWAATLTVSGTRAVGVAASPR---TAYEVVELDTVTGRARTIGA  377 (662)
T ss_dssp             TTTTEEEECCSSCC---EEEEEEEEETTEEEEEEEETT---EEEEEEEEETTTCCEEEEES
T ss_pred             CCCCcEEEecCCCC---eEEEEEecCCCEEEEEEcCCC---CCCEEEEEECCCCceEEeec
Confidence            88777666643211   11222 334666766654322   25789999988877777643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=85.91  E-value=17  Score=31.63  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCc--eeecccCCCC-cccceeEE-----eeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV--WSEVQTLRPP-GVMFSFLI-----ASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~--W~~i~~~~~~-~~~~~~~~-----~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++.+.+.|+..+.|..||+.+..  ...+...... ......+.     ..++++++.|+.++    .+.+|  |..+.+
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~----~i~i~--d~~~~~  201 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG----DIKLF--DLRNMA  201 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS----EEEEE--ETTTTE
T ss_pred             CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC----eEEEE--ECccCc
Confidence            56777888888899999998764  2223221111 11111121     24777777775432    56666  655544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=85.89  E-value=22  Score=34.31  Aligned_cols=56  Identities=9%  Similarity=-0.131  Sum_probs=31.4

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC---cceEecC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP---RFGFSRI  124 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg---~~~ynp~  124 (392)
                      ...+|+....     .+.+..+|..+++-..  .++.....+.++..  +..+|+.+.   +.++|+.
T Consensus       166 ~~~~~V~~~~-----~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          166 ENLFSVTLRD-----AGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GGEEEEEETT-----TTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CceEEEEeCC-----CCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            4566665432     2578899998876432  22222222344443  456787653   4788873

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=85.74  E-value=16  Score=33.66  Aligned_cols=131  Identities=10%  Similarity=0.040  Sum_probs=66.2

Q ss_pred             cceEEeec---CcceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCccccccc
Q 016239          109 NGFFFTTT---PRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIED  185 (392)
Q Consensus       109 ~g~i~v~g---g~~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~  185 (392)
                      ++.||+..   .+.++|+. +++...+..  .. .......+ +.             +++.||+.....       +..
T Consensus       149 ~g~Lyv~d~~~~I~~id~~-~~~v~~~~~--~~-~~P~~ia~-d~-------------~G~~lyvad~~~-------~~~  203 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFE-KEYVSTVYS--GL-SKVRTICW-TH-------------EADSMIITNDQN-------NND  203 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETT-TTEEEEEEC--CC-SCEEEEEE-CT-------------TSSEEEEEECCS-------CTT
T ss_pred             CCeEEEEeCCCcEEEEECC-CCEEEEEec--CC-CCcceEEE-eC-------------CCCEEEEEeCCC-------Ccc
Confidence            57888874   35788887 566655433  11 11122222 11             144588885421       112


Q ss_pred             ceEEEEEeCCCCCee---cCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccc
Q 016239          186 RLAVEIYDPHSDSWE---LCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMF  260 (392)
Q Consensus       186 ~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~  260 (392)
                      ...+..++. .+.+.   .+..+..+         +..++.  +|.||+..-..+.|++||+.+..-..+........-.
T Consensus       204 ~~~v~~~~~-~g~~~~~~~l~~~~~p---------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~  273 (430)
T 3tc9_A          204 RPNNYILTR-ESGFKVITELTKGQNC---------NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF  273 (430)
T ss_dssp             SEEEEEEEG-GGTSCSEEEEEECSSC---------CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE
T ss_pred             cceEEEEeC-CCceeeeeeeccCCCc---------eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce
Confidence            224555554 33343   22222222         333333  6889998766679999999877653332222211111


Q ss_pred             eeEEeeCCe-EEEEE
Q 016239          261 SFLIASPNM-LVLAG  274 (392)
Q Consensus       261 ~~~~~~~g~-l~v~g  274 (392)
                      ...+..+|+ ||+..
T Consensus       274 gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          274 HIQFHPSGNYAYIVV  288 (430)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             eEEEcCCCCEEEEEE
Confidence            222333555 88875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=85.71  E-value=17  Score=31.75  Aligned_cols=104  Identities=9%  Similarity=-0.058  Sum_probs=58.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceee-EEECCEEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSS-ALFRGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~g~ly~~gg~~~~i~~yd~~  243 (392)
                      ++.+|+++..           ...+.+||+.++..+... .+..  .      .+. ..-+|.+++..  ...|+.||+.
T Consensus        60 ~~~l~~~d~~-----------~~~i~~~d~~~~~~~~~~-~~~~--v------~~i~~~~dg~l~v~~--~~gl~~~d~~  117 (326)
T 2ghs_A           60 SGTAWWFNIL-----------ERELHELHLASGRKTVHA-LPFM--G------SALAKISDSKQLIAS--DDGLFLRDTA  117 (326)
T ss_dssp             TTEEEEEEGG-----------GTEEEEEETTTTEEEEEE-CSSC--E------EEEEEEETTEEEEEE--TTEEEEEETT
T ss_pred             CCEEEEEECC-----------CCEEEEEECCCCcEEEEE-CCCc--c------eEEEEeCCCeEEEEE--CCCEEEEECC
Confidence            5678887543           126889998877655432 1211  1      222 23478887765  3469999999


Q ss_pred             CCceeecccCCC---CcccceeEEeeCCeEEEEEeecCCCCCceeEEEee
Q 016239          244 KHVWSEVQTLRP---PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       244 ~~~W~~i~~~~~---~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      +++.+.+.....   ........+.-+|+||+.............||++|
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            888876643321   11112223344788877543221122246788888

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=85.68  E-value=29  Score=34.19  Aligned_cols=97  Identities=12%  Similarity=0.057  Sum_probs=54.5

Q ss_pred             ceEEEEEeCCC------C--CeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc---cEEEEEECCCC---ceeecc
Q 016239          186 RLAVEIYDPHS------D--SWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS---FSVSSFDLKKH---VWSEVQ  251 (392)
Q Consensus       186 ~~~~~~yd~~~------~--~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~i~~yd~~~~---~W~~i~  251 (392)
                      ...++++|..+      +  .++.+..-...   .    .......++.||+.+...   ..|+.+|+.+.   .|+.+.
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---~----~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEG---E----YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSS---C----EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCc---E----EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            34788888765      3  46665431111   1    122223456788876533   47999999775   487764


Q ss_pred             cCCCCcccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          252 TLRPPGVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       252 ~~~~~~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ..... .....+... +++|++....+.    ...||.+|..+.
T Consensus       331 ~~~~~-~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g  369 (710)
T 2xdw_A          331 PEHEK-DVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATG  369 (710)
T ss_dssp             CCCSS-CEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTC
T ss_pred             CCCCC-CeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCC
Confidence            43221 112223334 778877765432    567888887443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=85.64  E-value=28  Score=33.93  Aligned_cols=130  Identities=9%  Similarity=-0.072  Sum_probs=70.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC--CCCCCCCCCCCccceeeEE--ECCEEEEEe-ecccEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP--PLPADFRSGYSSQYLSSAL--FRGRFYVFG-IYSFSVSS  239 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~--~~g~ly~~g-g~~~~i~~  239 (392)
                      ++++|+.-..           ...+++++.....=+.+.  .+..|         ...++  .+|.||+.. |....|++
T Consensus        95 ~~~ly~~d~~-----------~~~I~v~~~dG~~~~~l~~~~l~~P---------~~Iavdp~~g~ly~tD~g~~~~I~r  154 (619)
T 3s94_A           95 GEKLYWTDSE-----------TNRIEVSNLDGSLRKVLFWQELDQP---------RAIALDPSSGFMYWTDWGEVPKIER  154 (619)
T ss_dssp             TTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSCSCC---------CCEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCEEEEEeCC-----------CCEEEEEECCCCCEEEEEeCCCCCC---------ceEEEecCCCeEEEeccCCCCEEEE
Confidence            6789888432           236888887654322222  22222         23344  268999986 43468999


Q ss_pred             EECCCCceeecccCCCCcccceeEEee--CCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHHHHhhcCCcccC
Q 016239          240 FDLKKHVWSEVQTLRPPGVMFSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDD  317 (392)
Q Consensus       240 yd~~~~~W~~i~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  317 (392)
                      .++....-..+.....  ..-..++..  +++||+....      ...|+++|.+...=+.+..  ...           
T Consensus       155 ~~~dG~~~~~l~~~~~--~~P~Glald~~~~~LY~aD~~------~~~I~~~~~dG~~~~~~~~--~~~-----------  213 (619)
T 3s94_A          155 AGMDGSSRFIIINSEI--YWPNGLTLDYEEQKLYWADAK------LNFIHKSNLDGTNRQAVVK--GSL-----------  213 (619)
T ss_dssp             EETTSCSCEEEECSSC--SSEEEEEEETTTTEEEEEETT------TCCEEEESSSCCEEC--------------------
T ss_pred             EECCCCceEEEEeCCC--CCCcEEEEEccCCEEEEEeCC------CCeEEEecCCCCccEEEEe--CCC-----------
Confidence            9886543333322111  112233333  7899998532      3467777876543222211  011           


Q ss_pred             ccceeEEEEeCCEEEEEec
Q 016239          318 KFASLKCVGLGNLIYVFNE  336 (392)
Q Consensus       318 ~~~~~~~~~~~~~i~v~gg  336 (392)
                       ...+++++.++.||+..-
T Consensus       214 -~~P~gi~~~~~~ly~td~  231 (619)
T 3s94_A          214 -PHPFALTLFEDILYWTDW  231 (619)
T ss_dssp             ---CCCEEESSSEEEEECT
T ss_pred             -CCceEEEEeCCEEEEecC
Confidence             125677778889999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.63  E-value=17  Score=31.45  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=39.3

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeE-EECCEEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSA-LFRGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~i~~yd~~  243 (392)
                      ++++|+....         .....+..+|..+++.+.+...+.. +..     ...+ ..++.+|+.....+.|+++|+.
T Consensus        82 dG~l~vad~~---------~~~~~v~~~d~~~g~~~~~~~~~~~-~~~-----~g~~~~~~~~~~v~d~~~g~i~~~d~~  146 (306)
T 2p4o_A           82 NGDLVATGWN---------ADSIPVVSLVKSDGTVETLLTLPDA-IFL-----NGITPLSDTQYLTADSYRGAIWLIDVV  146 (306)
T ss_dssp             TSCEEEEEEC---------TTSCEEEEEECTTSCEEEEEECTTC-SCE-----EEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             CCcEEEEecc---------CCcceEEEEcCCCCeEEEEEeCCCc-ccc-----CcccccCCCcEEEEECCCCeEEEEeCC
Confidence            5678886422         0112477888878877665544332 221     2222 2356788876556799999987


Q ss_pred             CC
Q 016239          244 KH  245 (392)
Q Consensus       244 ~~  245 (392)
                      +.
T Consensus       147 ~~  148 (306)
T 2p4o_A          147 QP  148 (306)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=85.57  E-value=20  Score=32.11  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=35.6

Q ss_pred             CEEEEEeecccEEEEEECCCCceeecc-cCCCCcccc--eeEE--eeCCeEEEEEeecCCCCCceeEEEeecC
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSEVQ-TLRPPGVMF--SFLI--ASPNMLVLAGMCNAPRGPSFNLWKVDEL  292 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~i~-~~~~~~~~~--~~~~--~~~g~l~v~gg~~~~~~~~~~v~~~d~~  292 (392)
                      +...+.|+.++.|..||+.+++-...- ...+.....  ..+.  ..++.+++.|+.+.    .+.+|  |..
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~----~v~~w--d~~  236 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT----TVRLW--DLR  236 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS----CEEEE--ETT
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC----eEEEE--ECC
Confidence            445667777889999999887643321 111111111  1112  12678888887554    68888  543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=85.41  E-value=10  Score=34.76  Aligned_cols=62  Identities=10%  Similarity=0.162  Sum_probs=34.1

Q ss_pred             CCEEEEEeecccEEEEEECCCCc-eeecccCCCCcccceeEEe-eCC-eEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHV-WSEVQTLRPPGVMFSFLIA-SPN-MLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~-W~~i~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ++.+++.++..+.|..||+.+.. ...+............+.. -++ .+++.|+.++    .+.+|.+
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg----~v~vwd~  307 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK----TVALWDL  307 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS----EEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC----eEEEEeC
Confidence            56788888888999999998753 1111111111111112222 234 4777776543    6777733

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=85.38  E-value=26  Score=33.31  Aligned_cols=63  Identities=13%  Similarity=-0.022  Sum_probs=35.1

Q ss_pred             EEEEeecccEEEEEECCCCceeecccCCCC-cccceeEE-eeC-CeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          227 FYVFGIYSFSVSSFDLKKHVWSEVQTLRPP-GVMFSFLI-ASP-NMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       227 ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~-~~~~~~~~-~~~-g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +++.|+..+.|..||..+.+-...-..... ......+. ..+ +++++.++.++    .+.+|  |..+.+
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vw--d~~~~~  240 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR----KISCF--DGKSGE  240 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC----CEEEE--ETTTCC
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC----eEEEE--ECCCCC
Confidence            777888889999999876653322111111 00122222 235 77777776443    57777  655443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=85.36  E-value=20  Score=31.91  Aligned_cols=67  Identities=10%  Similarity=-0.044  Sum_probs=35.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccC---C-CCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTL---R-PPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~---~-~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      ++ +++.|+..+.|..||+.+.+-...-..   . ........+ ...++++++.++.+.. ...+.+|  |..+.
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~-~g~i~i~--d~~~~  268 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLY--ETEFG  268 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEE--ETTTC
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC-CceEEEE--ECCCC
Confidence            56 777788889999999987654332111   1 001111222 2336777777764310 0156666  65543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=85.34  E-value=22  Score=32.47  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=37.9

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccC---CCCccc-ceeEEee--CCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTL---RPPGVM-FSFLIAS--PNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~---~~~~~~-~~~~~~~--~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      +|.||+.. ..+.|++||+.+.....+...   ...... ...++..  ++.||+....      ...|+++|.+..
T Consensus       230 ~g~lyv~d-~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------~~~I~~~~~~g~  299 (409)
T 3hrp_A          230 EEWLYFVD-SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------LSSVYKITPDGE  299 (409)
T ss_dssp             SSEEEEEC-TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------TTEEEEECTTCC
T ss_pred             CCeEEEEE-CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------CCEEEEEecCCC
Confidence            68899944 367899999988765554211   111111 1133433  6899987532      346777777654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=85.23  E-value=13  Score=32.14  Aligned_cols=76  Identities=8%  Similarity=0.062  Sum_probs=44.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCC---cccceeEEeeCCeEEEE----Eeec-------CCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPP---GVMFSFLIASPNMLVLA----GMCN-------APRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~---~~~~~~~~~~~g~l~v~----gg~~-------~~~~~~~~v~~~  289 (392)
                      +|++|+.....+.|..||+. ++.+.+......   ..-....+.-+|+||+.    |...       ........||++
T Consensus        96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            68888876545689999986 666655332111   11122334458899985    2110       001124689999


Q ss_pred             ecCccceEecc
Q 016239          290 DELSMEFSEIA  300 (392)
Q Consensus       290 d~~~~~W~~~~  300 (392)
                      |+.+.+.+.+.
T Consensus       175 d~~~g~~~~~~  185 (305)
T 3dr2_A          175 PPDGSPLQRMA  185 (305)
T ss_dssp             CSSSCCCEEEE
T ss_pred             cCCCCcEEEEe
Confidence            99877776653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=85.14  E-value=20  Score=31.82  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=33.4

Q ss_pred             CEEEEEeecccEEEEEECCCCceeecccCCCC-cccceeEEeeCCeEEEEEeecCCCCCceeEEEee
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPP-GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~-~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      +..+++++..+.|..||..+.+-...  +... ..........++++++.|+.++    .+.+|.++
T Consensus       304 ~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iw~~~  364 (408)
T 4a11_B          304 SSEFVFVPYGSTIAVYTVYSGEQITM--LKGHYKTVDCCVFQSNFQELYSGSRDC----NILAWVPS  364 (408)
T ss_dssp             SSCEEEEEETTEEEEEETTTCCEEEE--ECCCSSCEEEEEEETTTTEEEEEETTS----CEEEEEEC
T ss_pred             CceEEEEecCCEEEEEECcCCcceee--eccCCCeEEEEEEcCCCCEEEEECCCC----eEEEEeCC
Confidence            34555556678999999877643222  2211 1111222334677777776543    68888543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=85.12  E-value=23  Score=32.48  Aligned_cols=72  Identities=11%  Similarity=0.004  Sum_probs=41.5

Q ss_pred             CEEEEEee-cccEEEEEEC--CC-CceeecccCCCCcccceeEEeeCCeEEEEEeecCC---CCCceeEEEeecCccceE
Q 016239          225 GRFYVFGI-YSFSVSSFDL--KK-HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAP---RGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       225 g~ly~~gg-~~~~i~~yd~--~~-~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~---~~~~~~v~~~d~~~~~W~  297 (392)
                      +...++++ ..+.|..||.  .+ .++..+...... .....+....+.+++.......   ....+.+|.++..+..|+
T Consensus       319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            44444444 6788999998  33 344444333322 1223344455777776643321   123589999998888886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=84.91  E-value=23  Score=32.34  Aligned_cols=149  Identities=9%  Similarity=-0.006  Sum_probs=74.1

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecC-----cceEecCCcCc-eeecCC
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTP-----RFGFSRILNTS-WHLTSP  134 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg-----~~~ynp~~~~~-W~~~~~  134 (392)
                      ..+.||+....     ...+..+|+.++.-..+........ .++...++.+|+...     ++++++. ++. ...+..
T Consensus       140 ~~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~-~~~~~~~~g~  212 (409)
T 3hrp_A          140 GNNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA-SGWAPTRIGQ  212 (409)
T ss_dssp             STTEEEEEETT-----TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG-GTTCEEEEEE
T ss_pred             CCCCEEEEecC-----CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcC-CCceeEEeee
Confidence            34456665332     2467888988766554422211111 222222556777642     4677876 322 223311


Q ss_pred             CC--cCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCC
Q 016239          135 LR--FSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSG  212 (392)
Q Consensus       135 ~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~  212 (392)
                      ..  ....-+.+++.               ..++.||+...            ...+.+||+.+..-..+......-...
T Consensus       213 ~~~~~~~~p~~iav~---------------p~~g~lyv~d~------------~~~I~~~d~~~~~~~~~~~~~~~g~~~  265 (409)
T 3hrp_A          213 LGSTFSGKIGAVALD---------------ETEEWLYFVDS------------NKNFGRFNVKTQEVTLIKQLELSGSLG  265 (409)
T ss_dssp             CCTTSCSCCCBCEEC---------------TTSSEEEEECT------------TCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred             ccchhcCCcEEEEEe---------------CCCCeEEEEEC------------CCcEEEEECCCCCEEEEecccccCCCC
Confidence            11  11111223222               11678888422            126889998877655442111100000


Q ss_pred             CCccce-eeEEE--CCEEEEEeecccEEEEEECCCC
Q 016239          213 YSSQYL-SSALF--RGRFYVFGIYSFSVSSFDLKKH  245 (392)
Q Consensus       213 ~~~~~~-~~~~~--~g~ly~~gg~~~~i~~yd~~~~  245 (392)
                        .... ..++.  ++.||+.....+.|.+||+...
T Consensus       266 --~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~  299 (409)
T 3hrp_A          266 --TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE  299 (409)
T ss_dssp             --CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             --CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence              0001 34444  5899999877789999998654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=84.79  E-value=14  Score=36.45  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=64.8

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCC----CCCCCccceeeEEECCEEEEEeecccEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADF----RSGYSSQYLSSALFRGRFYVFGIYSFSVS  238 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~----~~~~~~~~~~~~~~~g~ly~~gg~~~~i~  238 (392)
                      ++++|+....            ..+..+|..+++  |+.-...+...    ...  ....+.++.++++|+.. ..+.|+
T Consensus        66 ~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~v~~-~dg~l~  130 (668)
T 1kv9_A           66 DGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCD--AVNRGVALWGDKVYVGT-LDGRLI  130 (668)
T ss_dssp             TTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTC--SCCCCCEEEBTEEEEEC-TTSEEE
T ss_pred             CCEEEEECCC------------CeEEEEECCCChhceEECCCCCcccccccccc--CCccceEEECCEEEEEc-CCCEEE
Confidence            8899987543            157778876654  77643322110    000  00134566788888754 457899


Q ss_pred             EEECCCC--ceeecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc--ceEe
Q 016239          239 SFDLKKH--VWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM--EFSE  298 (392)
Q Consensus       239 ~yd~~~~--~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~--~W~~  298 (392)
                      ++|.++.  .|+.-...+. .......-++.++.+|+..... .......|+.||..+.  .|+.
T Consensus       131 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEe
Confidence            9998766  5876432221 1111222345688877643221 1112456778887654  3875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=84.75  E-value=39  Score=35.66  Aligned_cols=68  Identities=6%  Similarity=0.087  Sum_probs=40.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                      ++...++|+..+.|..||..+.+........... ........+++.++.++.++    .+.+|  |..+.+...
T Consensus       972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~dg----~i~vw--d~~~~~~~~ 1039 (1249)
T 3sfz_A          972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA-VRHIQFTADGKTLISSSEDS----VIQVW--NWQTGDYVF 1039 (1249)
T ss_dssp             TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC-CCCEEECSSSSCEEEECSSS----BEEEE--ETTTTEEEC
T ss_pred             CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc-eEEEEECCCCCEEEEEcCCC----EEEEE--ECCCCceEE
Confidence            6778888888889999999876543321111111 11222334677777765433    67788  666655443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=84.69  E-value=22  Score=31.83  Aligned_cols=25  Identities=20%  Similarity=0.009  Sum_probs=20.0

Q ss_pred             CEEEEEeecccEEEEEECCCCceee
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSE  249 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~  249 (392)
                      +.+++.++..+.|..||+.+.+-..
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEE
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcce
Confidence            5788888888899999998876433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=84.43  E-value=20  Score=35.35  Aligned_cols=62  Identities=5%  Similarity=-0.143  Sum_probs=30.6

Q ss_pred             EEEEEECCC-CceeecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239          236 SVSSFDLKK-HVWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       236 ~i~~yd~~~-~~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      .|+.+|+.+ .+-..+..... ......... -+|+.+++...... .....|+.+|..+.+...+
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~~  327 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRVL  327 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEEE
Confidence            788889887 66544432211 111112223 55555444432211 1246677778776654443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=83.75  E-value=20  Score=30.72  Aligned_cols=62  Identities=8%  Similarity=0.024  Sum_probs=37.0

Q ss_pred             CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEee-CC----eEEEEEeecCCCCCceeEEEee
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIAS-PN----MLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~-~g----~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      +.+++.++..+.+..++....+...+............+... ++    ++++.|+.++    .+.+|.+.
T Consensus       182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg----~i~iwd~~  248 (351)
T 3f3f_A          182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG----RIRIFKIT  248 (351)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS----CEEEEEEE
T ss_pred             CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC----eEEEEeCC
Confidence            677888887778877777777765554443322222222323 44    6777776443    68888654

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=83.41  E-value=18  Score=30.04  Aligned_cols=59  Identities=20%  Similarity=0.138  Sum_probs=34.0

Q ss_pred             CCEEEEEeecccEEEEEECCCC---ceeecccCCCCcccceeEEe-----------eCCeEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKH---VWSEVQTLRPPGVMFSFLIA-----------SPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~---~W~~i~~~~~~~~~~~~~~~-----------~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ++++|+|-|.  ..+.||..+.   .|...+.+ + ....+++..           .++.+|++-|        ..-|+|
T Consensus       126 ~gk~yfFkG~--~ywr~d~~~~P~~i~~~~~g~-p-~~vdAa~~~~~~~~~~~~~~~~~~~YFFkg--------~~y~r~  193 (219)
T 1hxn_A          126 SSRLHIMAGR--RLWWLDLKSGAQATWTELPWP-H-EKVDGALCMEKPLGPNSCSTSGPNLYLIHG--------PNLYCY  193 (219)
T ss_dssp             CCEEEEEETT--EEEEEEGGGGGGCCCEEECCS-C-SCCSEEEEESSCSSSCCSCSSSCEEEEEET--------TEEEEE
T ss_pred             CCEEEEEeCC--EEEEEeCCCCceEhhhcCCCC-C-CCcCEEEEccccccccceeccCCeEEEEEC--------CEEEEE
Confidence            6899999884  6799997653   22222221 1 122233331           3567888864        357788


Q ss_pred             ecCcc
Q 016239          290 DELSM  294 (392)
Q Consensus       290 d~~~~  294 (392)
                      |..+.
T Consensus       194 ~~~~~  198 (219)
T 1hxn_A          194 RHVDK  198 (219)
T ss_dssp             SSHHH
T ss_pred             eCCce
Confidence            76543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=83.38  E-value=20  Score=30.91  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=18.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeeccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQT  252 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~  252 (392)
                      +|.||+..+  +.|.+||+..+....+..
T Consensus       249 ~G~lwv~~~--~gv~~~~~~g~~~~~~~~  275 (305)
T 3dr2_A          249 GGWLWSSSG--TGVCVFDSDGQLLGHIPT  275 (305)
T ss_dssp             TSCEEECCS--SEEEEECTTSCEEEEEEC
T ss_pred             CCCEEEecC--CcEEEECCCCCEEEEEEC
Confidence            578877663  469999997666555543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=82.92  E-value=34  Score=33.55  Aligned_cols=51  Identities=16%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCc
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      .+.+||..+.+-...  +... ...     ...+.+  ++.+.+.|+.++.|..+|+.+.+
T Consensus       542 ~v~vwd~~~~~~~~~--~~~h-~~~-----v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          542 TVKVWNLSNCKLRST--LAGH-TGY-----VSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             CEEEEETTTCCEEEE--ECCC-SSC-----EEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             eEEEEECCCCcEEEE--EcCC-CCC-----EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            588888876543221  1111 110     222333  67888889988999999998775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=82.62  E-value=24  Score=30.72  Aligned_cols=49  Identities=10%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecc-----cEEEEEECCCC
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYS-----FSVSSFDLKKH  245 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~-----~~i~~yd~~~~  245 (392)
                      .+.+||..+++-...-..+..         ...+.+  ++..++.++..     +.|..||..+.
T Consensus        97 ~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWKSPVP---------VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             EEEEEETTTCCEEEEEECSSC---------EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             eEEEEECCCCcEEEEeecCCC---------eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            688888877654332221111         122222  56666666665     78888888655

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=82.60  E-value=18  Score=29.32  Aligned_cols=62  Identities=16%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----cc-cCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQ-TLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~-~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +|++|+|-|  +..++||..+++-..     +. ..+..+....++...+|.+|++-|        ...|+||..+..
T Consensus       109 ~g~~yfFkg--~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~~idaa~~~~g~~Yffkg--------~~y~~~~~~~~~  176 (195)
T 1itv_A          109 RGKMLLFSG--RRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREKAYFCQD--------RFYWRVSSRSEL  176 (195)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEECGGGCEEHHHHSTTSCSSCSEEEEETTEEEEEET--------TEEEEEECCTTC
T ss_pred             CCeEEEEeC--CEEEEEeCCcccccCCCccChhhcCCCCCCCCCEEEEeCCeEEEEeC--------CEEEEEECCccE
Confidence            689999977  478999987754221     11 111111223334556799999864        367888876654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=82.18  E-value=29  Score=31.38  Aligned_cols=94  Identities=9%  Similarity=-0.076  Sum_probs=52.1

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA  265 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~  265 (392)
                      .+..+++.....+.+..-.   ..     ..+.+..  ++.||+..-..+.|+++++.....+.+...........++-.
T Consensus        97 ~I~~i~~~~~~~~~~~~~~---~~-----~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~  168 (386)
T 3v65_B           97 DIRQVLPHRSEYTLLLNNL---EN-----AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW  168 (386)
T ss_dssp             CEEEECTTSCCCEEEECSC---SC-----EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEET
T ss_pred             cceeeccCCCcEEEEecCC---Cc-----cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEe
Confidence            4667777665555443211   11     1333333  589999987778999999987765554222111111122112


Q ss_pred             eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          266 SPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       266 ~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      .++.||+....      ...|++++.+...
T Consensus       169 ~~g~lY~~d~~------~~~I~~~~~dg~~  192 (386)
T 3v65_B          169 VHDKLYWTDSG------TSRIEVANLDGAH  192 (386)
T ss_dssp             TTTEEEEEETT------TTEEEECBTTSCS
T ss_pred             CCCeEEEEcCC------CCeEEEEeCCCCc
Confidence            47899987632      2356666766543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=81.69  E-value=21  Score=32.42  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=39.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+++.|+.           ...+.+||..+.+-...-..+.. ...     ..++.+  ++.+.+.|+.++.|..||+
T Consensus       181 ~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h-~~~-----v~~~~~s~~~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          181 EKSLLVALTN-----------LSRVIIFDIRTLERLQIIENSPR-HGA-----VSSICIDEECCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             SCEEEEEEET-----------TSEEEEEETTTCCEEEEEECCGG-GCC-----EEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEeC-----------CCeEEEEeCCCCeeeEEEccCCC-CCc-----eEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            4667777664           22688999877553221111100 111     233333  6788888988899999999


Q ss_pred             CCCce
Q 016239          243 KKHVW  247 (392)
Q Consensus       243 ~~~~W  247 (392)
                      .+.+.
T Consensus       244 ~~~~~  248 (437)
T 3gre_A          244 RFNVL  248 (437)
T ss_dssp             TTTEE
T ss_pred             CCccE
Confidence            87654

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=81.53  E-value=21  Score=29.29  Aligned_cols=109  Identities=11%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCce---eeccc--CCCC-cccceeEEee-CCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVW---SEVQT--LRPP-GVMFSFLIAS-PNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W---~~i~~--~~~~-~~~~~~~~~~-~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      ++++|+|-|.  ..++|+-.+-.-   +.|..  +|.. ....+++... ++++|++-|        ...|+||..+++ 
T Consensus        79 ~~~iyfFkG~--~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~-  147 (207)
T 1pex_A           79 HDLIFIFRGR--KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHI-  147 (207)
T ss_dssp             TTEEEEEETT--EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTE-
T ss_pred             CCcEEEEccC--EEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCcc-
Confidence            5999999874  678887432111   11222  1111 1222332222 589999874        367999987543 


Q ss_pred             EecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       297 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                       ....-|..+...|-+...    ..-+++..++++|++-|..       ++++|..+.+
T Consensus       148 -~d~gyPr~i~~~~~Gip~----~iDaAf~~~g~~YfFkg~~-------y~rf~~~~~~  194 (207)
T 1pex_A          148 -MDKDYPRLIEEDFPGIGD----KVDAVYEKNGYIYFFNGPI-------QFEYSIWSNR  194 (207)
T ss_dssp             -ECSSCCCBHHHHSTTSCS----CCSEEEEETTEEEEEETTE-------EEEEETTTTE
T ss_pred             -ccCCCCccHHHcCCCCCC----CccEEEEcCCcEEEEECCE-------EEEEeCCccE
Confidence             233455555444544421    1234445689999998742       3455655544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=81.48  E-value=23  Score=29.75  Aligned_cols=186  Identities=6%  Similarity=-0.148  Sum_probs=93.6

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee--cceEEeecC----cceEecCCcCceeecCCC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA--NGFFFTTTP----RFGFSRILNTSWHLTSPL  135 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~g~i~v~gg----~~~ynp~~~~~W~~~~~~  135 (392)
                      ++.+|+....     ...+..+++....-..+.... ......++..  ++.||+...    +.++|+. ...-+.+...
T Consensus        47 ~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~~~  119 (267)
T 1npe_A           47 DKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLFDT  119 (267)
T ss_dssp             TTEEEEEETT-----TTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECS
T ss_pred             CCEEEEEECC-----CCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEEEC
Confidence            5567765332     256888888765432221110 0122345543  678998743    3677765 3322222111


Q ss_pred             CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCc
Q 016239          136 RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSS  215 (392)
Q Consensus       136 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  215 (392)
                      .  -.......+ +.             +++++|+....         .....++++++....-+.+.....  ..    
T Consensus       120 ~--~~~P~~i~v-d~-------------~~g~lyv~~~~---------~~~~~I~~~~~dg~~~~~~~~~~~--~~----  168 (267)
T 1npe_A          120 G--LVNPRGIVT-DP-------------VRGNLYWTDWN---------RDNPKIETSHMDGTNRRILAQDNL--GL----  168 (267)
T ss_dssp             S--CSSEEEEEE-ET-------------TTTEEEEEECC---------SSSCEEEEEETTSCCCEEEECTTC--SC----
T ss_pred             C--CCCccEEEE-ee-------------CCCEEEEEECC---------CCCcEEEEEecCCCCcEEEEECCC--CC----
Confidence            1  011112222 11             16789987432         012367777765433222211111  11    


Q ss_pred             cceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          216 QYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       216 ~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                       ..+.+..  ++.||+.....+.|.+||+....-..+....   .....++..++.||+....      ...|+++|+.+
T Consensus       169 -P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d~~~lyva~~~------~~~v~~~d~~~  238 (267)
T 1npe_A          169 -PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSYGKNLYYTDWK------TNSVIAMDLAI  238 (267)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEETTEEEEEETT------TTEEEEEETTT
T ss_pred             -CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEeCCEEEEEECC------CCeEEEEeCCC
Confidence             1333333  4689999877789999999764322222111   1112345568899987532      34677888875


Q ss_pred             cc
Q 016239          294 ME  295 (392)
Q Consensus       294 ~~  295 (392)
                      .+
T Consensus       239 g~  240 (267)
T 1npe_A          239 SK  240 (267)
T ss_dssp             TE
T ss_pred             CC
Confidence            54

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=81.27  E-value=43  Score=32.85  Aligned_cols=122  Identities=7%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeec----------
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIY----------  233 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~----------  233 (392)
                      +++.+++....      .+....++.++|..++.......++.. ..      ...+. -+|+.++++..          
T Consensus       131 DG~~la~~~~~------~G~~~~~i~v~dl~tg~~~~~~~~~~~-~~------~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          131 DGKKVAFAQKP------NAADEAVLHVIDVDSGEWSKVDVIEGG-KY------ATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             TSSEEEEEEEE------TTCSCCEEEEEETTTCCBCSSCCBSCC-TT------CCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEECC------CCCceEEEEEEECCCCCCcCCcccCcc-cc------cceEEecCCCEEEEEEecCCCCCcccc
Confidence            55655554331      122345799999998876411111111 11      12222 25655555433          


Q ss_pred             ---ccEEEEEECCCCcee--ecccCCCC-cccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEeccc
Q 016239          234 ---SFSVSSFDLKKHVWS--EVQTLRPP-GVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAI  301 (392)
Q Consensus       234 ---~~~i~~yd~~~~~W~--~i~~~~~~-~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~  301 (392)
                         ...|+.+++.+.+-+  .+-..+.. .........-+|+.+++......  ...++|.+|..+..|+.+..
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~  269 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVK  269 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeec
Confidence               235999999877633  22222211 11222223446665555443321  25788888876677777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=81.18  E-value=38  Score=32.20  Aligned_cols=89  Identities=6%  Similarity=-0.032  Sum_probs=49.8

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeeccc--EEEEEECCCCceeecccCCCCcccceeE
Q 016239          187 LAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSF--SVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       187 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~--~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      .+++++|..++.++.+..-...        ....+. -+|+..+.+...+  .|+.+|+.+++...+.. ..... ....
T Consensus       175 ~~i~~~d~~~g~~~~l~~~~~~--------~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~-~~~~  244 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRVFDSGEGS--------FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLEL-PSKDF-SSYR  244 (582)
T ss_dssp             EEEEEEETTTCCCEEECCSSCE--------EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCC-SCSHH-HHHC
T ss_pred             eEEEEEcCCCCCceEeecCCCc--------cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccC-CCcCh-hhhh
Confidence            4699999988888876432211        012222 2565444555555  89999999887762221 11111 1111


Q ss_pred             --------EeeCCeEEEEEeecCCCCCceeEEEe
Q 016239          264 --------IASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       264 --------~~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                              ..-+|++++.+..+.    ...+|.+
T Consensus       245 ~~~~~~~~~spdg~~~~~~~~~g----~~~l~~~  274 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVVARREG----RSAVFID  274 (582)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETT----EEEEEET
T ss_pred             hccccceeEcCCCcEEEEEEcCC----cEEEEEE
Confidence                    344777777665433    5777754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=81.02  E-value=14  Score=31.90  Aligned_cols=85  Identities=9%  Similarity=0.107  Sum_probs=43.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCC-CCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPH-SDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+|+....            ..+..||+. ...|+...+.+.   .      .+.+.. +|.+|+ |...+.|+.||+
T Consensus       107 ~~~l~v~t~~------------~~l~~~d~~g~~~~~~~~~~~~---~------~~~~~~~~g~l~v-gt~~~~l~~~d~  164 (330)
T 3hxj_A          107 EDILYVTSMD------------GHLYAINTDGTEKWRFKTKKAI---Y------ATPIVSEDGTIYV-GSNDNYLYAINP  164 (330)
T ss_dssp             TTEEEEECTT------------SEEEEECTTSCEEEEEECSSCC---C------SCCEECTTSCEEE-ECTTSEEEEECT
T ss_pred             CCEEEEEecC------------CEEEEEcCCCCEEEEEcCCCce---e------eeeEEcCCCEEEE-EcCCCEEEEECC
Confidence            6777775321            157788876 334665432111   1      233334 677766 444578999999


Q ss_pred             CCC-ceeecccCCCCcccceeEEeeCCeEEEEE
Q 016239          243 KKH-VWSEVQTLRPPGVMFSFLIASPNMLVLAG  274 (392)
Q Consensus       243 ~~~-~W~~i~~~~~~~~~~~~~~~~~g~l~v~g  274 (392)
                      ... .|..-...   ......+...++.||+..
T Consensus       165 ~g~~~~~~~~~~---~~~~~~~~d~~g~l~v~t  194 (330)
T 3hxj_A          165 DGTEKWRFKTND---AITSAASIGKDGTIYFGS  194 (330)
T ss_dssp             TSCEEEEEECSS---CCCSCCEECTTCCEEEES
T ss_pred             CCCEeEEEecCC---CceeeeEEcCCCEEEEEe
Confidence            722 35443211   111122222467777643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=80.70  E-value=33  Score=31.16  Aligned_cols=104  Identities=10%  Similarity=-0.052  Sum_probs=58.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecC-C-CCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELC-P-PLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~-~-~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~y  240 (392)
                      ++.||+.-..          ....+++++.....=+.+ . .+..+         .+.++-  ++.||+.-...+.|+++
T Consensus       213 ~g~ly~td~~----------~~~~I~~~~~dG~~~~~~~~~~l~~P---------~glavd~~~~~lY~aD~~~~~I~~~  273 (400)
T 3p5b_L          213 HGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENIQWP---------NGITLDLLSGRLYWVDSKLHSISSI  273 (400)
T ss_dssp             TTEEEEEECS----------SSCCEEEEETTSCSCEEEECSSCSCE---------EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCeEEEEeCC----------CCCEEEEEeCCCCccEEEEECCCCce---------EEEEEEeCCCEEEEEECCCCEEEEE
Confidence            6788887411          112578887754332222 1 11111         334443  68999998777899999


Q ss_pred             ECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          241 DLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       241 d~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      |.....-..+...........++++.++.||+....      ...|+++|..+
T Consensus       274 d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~------~~~V~~~~~~~  320 (400)
T 3p5b_L          274 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII------NEAIFSANRLT  320 (400)
T ss_dssp             ETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESS------SCSEEEEESSS
T ss_pred             eCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCC------CCeEEEEEcCC
Confidence            986543333322211111223456688999998732      34566777433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=80.28  E-value=45  Score=33.07  Aligned_cols=100  Identities=9%  Similarity=-0.072  Sum_probs=58.3

Q ss_pred             ceEEEEEeCCCC--C-eecCCCCCCCCCCCCCccceeeEEECCEEEEEeec---ccEEEEEECCC--CceeecccCCCCc
Q 016239          186 RLAVEIYDPHSD--S-WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIY---SFSVSSFDLKK--HVWSEVQTLRPPG  257 (392)
Q Consensus       186 ~~~~~~yd~~~~--~-W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~---~~~i~~yd~~~--~~W~~i~~~~~~~  257 (392)
                      ...++++|..+.  . |+.+..-... ..      ......++.||+....   ...|+.+|+.+  ..|+.+-+.....
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~-~~------~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~  365 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKA-QW------DFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN  365 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSS-CE------EEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCc-eE------EEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence            347888888776  6 7776532111 11      1222356678777532   35799999987  5788775332211


Q ss_pred             ccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          258 VMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       258 ~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                        ...+...+++|++....+.    ...+|.+|..+..-..
T Consensus       366 --l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~  400 (741)
T 1yr2_A          366 --LESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGA  400 (741)
T ss_dssp             --EEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEE
T ss_pred             --EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceee
Confidence              1223344888887765433    5778888865543333

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=80.25  E-value=23  Score=29.01  Aligned_cols=62  Identities=11%  Similarity=0.105  Sum_probs=38.3

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----cc-cCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQ-TLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~-~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +|++|+|-|  +..++||..+++-..     +. ..+.......++...+|++|++-|        ...|+||..+++
T Consensus       127 ~gk~yfFkG--~~ywr~d~~~~~~d~gyPr~i~~~~~Gip~~iDaAf~~~g~~YfFkg--------~~y~rf~~~~~~  194 (207)
T 1pex_A          127 TGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNG--------PIQFEYSIWSNR  194 (207)
T ss_dssp             TSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTTSCSCCSEEEEETTEEEEEET--------TEEEEEETTTTE
T ss_pred             CCEEEEEeC--CEEEEEeCcCccccCCCCccHHHcCCCCCCCccEEEEcCCcEEEEEC--------CEEEEEeCCccE
Confidence            489999987  478999987653221     11 111111122333456999999864        367888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	7e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	4e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.001
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.001
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.003

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
          + +L  ++   I S L +P L++ S VCK W  + S  S 
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 31/209 (14%), Positives = 49/209 (23%), Gaps = 19/209 (9%)

Query: 38  KSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHN------TSSRNNQSFAFDPASNSWF 91
           K+W S+ +A     L A                               ++ +   S    
Sbjct: 157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 216

Query: 92  HLPPAQEPRAGSC---------FIGANGFFFTTTPRFGFSRILNTSWHLTSPLRFSRINP 142
                Q  R  +          +    G   T      +     T+      L     +P
Sbjct: 217 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 276

Query: 143 LVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELC 202
                 +         +          + GG R      D       EIY P  D++   
Sbjct: 277 NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 336

Query: 203 PPLPADFRSGYSSQYLSSALFRGRFYVFG 231
            P     R  +S   L   L  GR +  G
Sbjct: 337 NPNSIV-RVYHSISLL---LPDGRVFNGG 361

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 15/144 (10%), Positives = 33/144 (22%), Gaps = 4/144 (2%)

Query: 167 KFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGR 226
           + ++    R                +DP +                       S    G+
Sbjct: 32  RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG---ISMDGNGQ 88

Query: 227 FYV-FGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFN 285
             V  G  +   S +D     W     ++      S    S   +   G   +      N
Sbjct: 89  IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN 148

Query: 286 LWKVDELSMEFSEIAIMPHDFLYS 309
                  S  ++ +     + + +
Sbjct: 149 GEVYSPSSKTWTSLPNAKVNPMLT 172

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 11 TTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
                I E ILS L   +L  A  VCK W  + S    
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF 49
           + L  ++   +LS L    L++A+  C+ WR +      
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIIS 45
           T+L  +I+ +I + L    +I +  V ++W  II 
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 41

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 40/304 (13%), Positives = 80/304 (26%), Gaps = 32/304 (10%)

Query: 66  FLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPRFGFSRIL 125
           +  G +   S +    A++P++ +W  L   Q PR+G       G  +            
Sbjct: 8   YTAGGYFRQSLSY-LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYA------VGGRN 60

Query: 126 NTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIED 185
           N+    T        NP+   +                 +   I   G        +  +
Sbjct: 61  NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 120

Query: 186 RLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKH 245
           R     Y+P  D W L  P+         +         G F        S   +  +++
Sbjct: 121 R-----YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERN 174

Query: 246 VWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHD 305
            W  +  +          +    +    G     +  S   + V+  +  F         
Sbjct: 175 EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR- 233

Query: 306 FLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRRLPQ 365
                         ++L        IYV        +   V     ++D    +W  + +
Sbjct: 234 --------------SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD----TWSEVTR 275

Query: 366 LPSP 369
           + S 
Sbjct: 276 MTSG 279

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 171 VGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVF 230
           VG + +  G    +    +E Y+P + +W     L    RSG      +  +  G  Y  
Sbjct: 3   VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-RSGL-----AGCVVGGLLYAV 56

Query: 231 GIYSFS 236
           G  + S
Sbjct: 57  GGRNNS 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.97
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.92
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.36
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.22
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.78
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.38
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.23
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.71
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.62
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	94.61
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.41
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.36
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.17
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.65
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	93.42
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.29
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	92.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.48
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	92.43
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	92.41
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.37
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.14
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	91.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	91.59
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	91.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	91.49
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.51
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	90.25
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	90.17
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	89.07
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	88.59
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	88.58
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	88.57
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	88.16
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.82
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	84.75
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	84.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	84.04
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	82.59
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	81.15
d1tbga_	340	beta1-subunit of the signal-transducing G protein	80.27
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.21

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=269.83  Aligned_cols=267  Identities=19%  Similarity=0.298  Sum_probs=225.9

Q ss_pred             CCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEeecceEEeecCc-------------ceEecCCcC
Q 016239           61 PRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGFFFTTTPR-------------FGFSRILNT  127 (392)
Q Consensus        61 ~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g~i~v~gg~-------------~~ynp~~~~  127 (392)
                      .+..||++||... ..++++++||+++++|..++++|.+|.+|+++..++.||++||.             ++|||. ++
T Consensus         3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-~~   80 (288)
T d1zgka1           3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM-TN   80 (288)
T ss_dssp             CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT-TT
T ss_pred             cCCEEEEECCcCC-CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccc-cc
Confidence            4678999999865 46788999999999999999999999999999999999999982             799999 79


Q ss_pred             ceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCC
Q 016239          128 SWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPA  207 (392)
Q Consensus       128 ~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  207 (392)
                      +|+++++++.+|..|+++++                 ++++|++||..      .......++.||+.++.|...+.++.
T Consensus        81 ~w~~~~~~p~~r~~~~~~~~-----------------~~~i~~~gg~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (288)
T d1zgka1          81 QWSPCAPMSVPRNRIGVGVI-----------------DGHIYAVGGSH------GCIHHNSVERYEPERDEWHLVAPMLT  137 (288)
T ss_dssp             EEEECCCCSSCCBTCEEEEE-----------------TTEEEEECCEE------TTEECCCEEEEETTTTEEEECCCCSS
T ss_pred             cccccccccceecceecccc-----------------ceeeEEeccee------cccccceeeeeccccCcccccccccc
Confidence            99999999999999999999                 99999999974      22345578999999999999988887


Q ss_pred             CCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCC
Q 016239          208 DFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGP  282 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~  282 (392)
                      . |.+     ++++..++++|++||..     ..++.||+.+++|.....++.... .+.++..+++|+++||.... ..
T Consensus       138 ~-r~~-----~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~GG~~~~-~~  209 (288)
T d1zgka1         138 R-RIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GAGVCVLHNCIYAAGGYDGQ-DQ  209 (288)
T ss_dssp             C-CBS-----CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSS-SB
T ss_pred             c-ccc-----ceeeeeeecceEecCcccccccceEEEeeccccccccccccccccc-cccccceeeeEEEecCcccc-cc
Confidence            6 665     78889999999999875     478999999999999877666443 45568889999999986543 23


Q ss_pred             ceeEEEeecCccceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239          283 SFNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR  362 (392)
Q Consensus       283 ~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~  362 (392)
                      ....+.||..+++|+.++.+|..             |..++++..+++|||+||.........+..+|+++++    |+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~p~~-------------r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~----W~~  272 (288)
T d1zgka1         210 LNSVERYDVETETWTFVAPMKHR-------------RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT----WSE  272 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSC-------------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE----EEE
T ss_pred             ccceeeeeecceeeecccCccCc-------------ccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE----EEE
Confidence            46778899999999999988876             5688999999999999996443333334445999999    999


Q ss_pred             cCCCCCcccccceEE
Q 016239          363 LPQLPSPVNEFHKVI  377 (392)
Q Consensus       363 ~~~~p~~~~~~~~~~  377 (392)
                      +++||.+|..|+++|
T Consensus       273 ~~~~p~~R~~~~~~~  287 (288)
T d1zgka1         273 VTRMTSGRSGVGVAV  287 (288)
T ss_dssp             EEECSSCCBSCEEEE
T ss_pred             CCCCCCCcEeEEEEE
Confidence            999999998887664

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=225.72  Aligned_cols=246  Identities=17%  Similarity=0.264  Sum_probs=203.9

Q ss_pred             ChhhHHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCC----CCCCCceeeeeCCCCceeeCCCCCCCCC
Q 016239           26 PIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNT----SSRNNQSFAFDPASNSWFHLPPAQEPRA  101 (392)
Q Consensus        26 P~~~l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~----~~~~~~~~~yd~~~~~W~~~~~~~~~r~  101 (392)
                      ++.++..|++..++|..+...|.  .+..| +++..++.+|++||.+.    .....+++.||+.+++|..+++++.+|.
T Consensus        17 ~~~~~~~yd~~t~~W~~~~~~p~--~R~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~   93 (288)
T d1zgka1          17 SLSYLEAYNPSNGTWLRLADLQV--PRSGL-AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRN   93 (288)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSS--CCBSC-EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCceEEEEECCCCeEEECCCCCC--cccee-EEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceec
Confidence            34567789999999999876665  33333 44556889999999642    2346789999999999999999999999


Q ss_pred             cceEEeecceEEeecCc---------ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEe
Q 016239          102 GSCFIGANGFFFTTTPR---------FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVG  172 (392)
Q Consensus       102 ~~~~~~~~g~i~v~gg~---------~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~g  172 (392)
                      .++++..++.+|++||.         ++||+. +++|...+.++.+|..+++++.                 ++++|++|
T Consensus        94 ~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~-----------------~~~~~~~G  155 (288)
T d1zgka1          94 RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE-RDEWHLVAPMLTRRIGVGVAVL-----------------NRLLYAVG  155 (288)
T ss_dssp             TCEEEEETTEEEEECCEETTEECCCEEEEETT-TTEEEECCCCSSCCBSCEEEEE-----------------TTEEEEEC
T ss_pred             ceeccccceeeEEecceecccccceeeeeccc-cCccccccccccccccceeeee-----------------eecceEec
Confidence            99999999999999873         789999 7999999999999999999999                 99999999


Q ss_pred             ceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecc-----cEEEEEECCCCce
Q 016239          173 GVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYS-----FSVSSFDLKKHVW  247 (392)
Q Consensus       173 G~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~i~~yd~~~~~W  247 (392)
                      |.+      .......++.||+.+++|...+..+.. +..     ++++..++++|++||..     ...+.||..+++|
T Consensus       156 G~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         156 GFD------GTNRLNSAECYYPERNEWRMITAMNTI-RSG-----AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             CBC------SSCBCCCEEEEETTTTEEEECCCCSSC-CBS-----CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             Ccc------cccccceEEEeeccccccccccccccc-ccc-----ccccceeeeEEEecCccccccccceeeeeecceee
Confidence            974      223345799999999999999877776 444     78889999999999865     4789999999999


Q ss_pred             eecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCCHHH
Q 016239          248 SEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMPHDF  306 (392)
Q Consensus       248 ~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p~~~  306 (392)
                      +.+++++..+ ..+.++..+++||++||.+.. .....+|+||+++++|+++..||..+
T Consensus       224 ~~~~~~p~~r-~~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~R  280 (288)
T d1zgka1         224 TFVAPMKHRR-SALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTRMTSGR  280 (288)
T ss_dssp             EECCCCSSCC-BSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             ecccCccCcc-cceEEEEECCEEEEEecCCCC-eecceEEEEECCCCEEEECCCCCCCc
Confidence            9998766644 456678899999999986543 23457899999999999999999883

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.95  E-value=4.4e-28  Score=225.58  Aligned_cols=302  Identities=11%  Similarity=0.025  Sum_probs=208.6

Q ss_pred             ccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCC------CCCceeeeeCCCCceeeCCCCCCCCCcc--eEE
Q 016239           35 SVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSS------RNNQSFAFDPASNSWFHLPPAQEPRAGS--CFI  106 (392)
Q Consensus        35 ~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~  106 (392)
                      +...+|..++..|.-   ..+.++...++.++++||.....      .+..+++|||.+++|..++.++.++..+  +.+
T Consensus         6 p~~g~W~~~~~~p~~---~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~   82 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIV---PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGIS   82 (387)
T ss_dssp             TTSCEEEEEEECSSC---CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEE
T ss_pred             CCCCccCCcCCCCcc---ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEE
Confidence            455689888776642   22345566788999999975432      2234778999999999888877776554  323


Q ss_pred             -eecceEEeecCc-----ceEecCCcCceeecCCCCcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcc
Q 016239          107 -GANGFFFTTTPR-----FGFSRILNTSWHLTSPLRFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGL  180 (392)
Q Consensus       107 -~~~g~i~v~gg~-----~~ynp~~~~~W~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~  180 (392)
                       ..+|.||+.||.     ++|||. +++|..+++|+.+|..|+++++.                ++++|++||...    
T Consensus        83 ~~~~g~i~v~Gg~~~~~~~~yd~~-~~~w~~~~~~~~~r~~~~~~~~~----------------dG~v~v~GG~~~----  141 (387)
T d1k3ia3          83 MDGNGQIVVTGGNDAKKTSLYDSS-SDSWIPGPDMQVARGYQSSATMS----------------DGRVFTIGGSWS----  141 (387)
T ss_dssp             ECTTSCEEEECSSSTTCEEEEEGG-GTEEEECCCCSSCCSSCEEEECT----------------TSCEEEECCCCC----
T ss_pred             EecCCcEEEeecCCCcceeEecCc-cCcccccccccccccccceeeec----------------CCceeeeccccc----
Confidence             348999999873     899999 89999999999999999988872                679999999632    


Q ss_pred             cccccceEEEEEeCCCCCeecCCCCCCCCCCC--CC----ccceee--EEECCEEEEEeecccEEEEEECCCCceeeccc
Q 016239          181 VDIEDRLAVEIYDPHSDSWELCPPLPADFRSG--YS----SQYLSS--ALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQT  252 (392)
Q Consensus       181 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~--~~----~~~~~~--~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~  252 (392)
                       ......++++||+.+++|+.++.++......  ..    ......  ...+|++|++|+....++.||+.+..|.....
T Consensus       142 -~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~  220 (387)
T d1k3ia3         142 -GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK  220 (387)
T ss_dssp             -SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred             -cccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccc
Confidence             2234568999999999999887654321110  00    000111  22268899999888899999999999988754


Q ss_pred             CCC------Cccccee--EEeeCCeEEEEEeecCCCCC----c---eeEEEeecCccceEecccCCHHHHHhhcCCcccC
Q 016239          253 LRP------PGVMFSF--LIASPNMLVLAGMCNAPRGP----S---FNLWKVDELSMEFSEIAIMPHDFLYSLVDTEEDD  317 (392)
Q Consensus       253 ~~~------~~~~~~~--~~~~~g~l~v~gg~~~~~~~----~---~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~  317 (392)
                      .+.      ......+  +...++++|++||.......    .   ..++.++.....|+.+..||..+           
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r-----------  289 (387)
T d1k3ia3         221 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR-----------  289 (387)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC-----------
T ss_pred             cccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccc-----------
Confidence            322      1112222  22348999999985443211    1   22232345667788999998773           


Q ss_pred             ccceeEEEE-eCCEEEEEeccccC-----CCCeEEEEe-ecCCCccceeeeecCCCCCcccccceEEE
Q 016239          318 KFASLKCVG-LGNLIYVFNEEYHK-----KYPACVCEI-GTESDKCRCSWRRLPQLPSPVNEFHKVIS  378 (392)
Q Consensus       318 ~~~~~~~~~-~~~~i~v~gg~~~~-----~~~~~~~~~-d~~~~~~~~~W~~~~~~p~~~~~~~~~~~  378 (392)
                        ..+++++ .+++|||+||....     ......+|+ |+++++    |+.+++||.+|..|+++++
T Consensus       290 --~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~----W~~~~~~~~~R~~Hs~a~l  351 (387)
T d1k3ia3         290 --TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLL  351 (387)
T ss_dssp             --BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEE
T ss_pred             --ccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe----EEECCCCCCcccceEEEEE
Confidence              3455554 47899999996432     122233455 999999    9999999999999876544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.92  E-value=5e-25  Score=204.72  Aligned_cols=275  Identities=10%  Similarity=0.007  Sum_probs=181.4

Q ss_pred             HHHhhccchhhhhhhcCcchhhHhhhccCCCCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-
Q 016239           30 LIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-  108 (392)
Q Consensus        30 l~~~~~v~k~W~~l~~~~~f~~~~~~~~~~~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-  108 (392)
                      ...+++...+|..+...+.-...+.+......++.++++|+...    ..+.+||+.+++|..++.|+.+|..++++.. 
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~  129 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMS  129 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECT
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC----cceeEecCccCcccccccccccccccceeeec
Confidence            44688888999876554432222222334567889999988653    5678999999999999999999999987776 


Q ss_pred             cceEEeecCc----------ceEecCCcCceeecCCCCcCccCceE---EEEEcCCCCcccccCCcccCCCeEEEEecee
Q 016239          109 NGFFFTTTPR----------FGFSRILNTSWHLTSPLRFSRINPLV---GVFYDHDRGHCDLASGFACNLPKFIVVGGVR  175 (392)
Q Consensus       109 ~g~i~v~gg~----------~~ynp~~~~~W~~~~~~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~  175 (392)
                      +|.||++||.          ++|||. +++|..++.++..+.....   ....+      ...+.|...++++|+.||. 
T Consensus       130 dG~v~v~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~g~~-  201 (387)
T d1k3ia3         130 DGRVFTIGGSWSGGVFEKNGEVYSPS-SKTWTSLPNAKVNPMLTADKQGLYRSD------NHAWLFGWKKGSVFQAGPS-  201 (387)
T ss_dssp             TSCEEEECCCCCSSSCCCCEEEEETT-TTEEEEETTSCSGGGCCCCTTGGGTTT------CSCCEEECGGGCEEECCSS-
T ss_pred             CCceeeeccccccccccceeeeecCC-CCceeecCCCcccccccccccceeecc------ceeEEEEeCCCCEEEecCc-
Confidence            8899999872          899999 7999998876544322110   00000      0000011115666666654 


Q ss_pred             ecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCC-CccceeeEE---ECCEEEEEeeccc--------EE-----E
Q 016239          176 FIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGY-SSQYLSSAL---FRGRFYVFGIYSF--------SV-----S  238 (392)
Q Consensus       176 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~---~~g~ly~~gg~~~--------~i-----~  238 (392)
                                ....+.||+.+..|.....++.. +... ......++.   .++++|++||...        ..     .
T Consensus       202 ----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~  270 (387)
T d1k3ia3         202 ----------TAMNWYYTSGSGDVKSAGKRQSN-RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG  270 (387)
T ss_dssp             ----------SEEEEEECSTTCEEEEEEECEET-TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECC
T ss_pred             ----------CCcEEecCcccCcEeeccccccC-cccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccccc
Confidence                      34788999999999887644332 1110 001122222   3799999998641        12     2


Q ss_pred             EEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCC-----CCCceeEEEeecCccceEecccCCHHHHHhhcCC
Q 016239          239 SFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAP-----RGPSFNLWKVDELSMEFSEIAIMPHDFLYSLVDT  313 (392)
Q Consensus       239 ~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~-----~~~~~~v~~~d~~~~~W~~~~~~p~~~~~~~~~~  313 (392)
                      .++...++|..+..++..+..+.+++..+|+||++||....     ......++.||+++++|++++.||..+       
T Consensus       271 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R-------  343 (387)
T d1k3ia3         271 EPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVR-------  343 (387)
T ss_dssp             STTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCC-------
T ss_pred             ccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcc-------
Confidence            23445567888888887776666655568999999986422     112345677799999999999998763       


Q ss_pred             cccCccceeEEEE--eCCEEEEEeccccC
Q 016239          314 EEDDKFASLKCVG--LGNLIYVFNEEYHK  340 (392)
Q Consensus       314 ~~~~~~~~~~~~~--~~~~i~v~gg~~~~  340 (392)
                            ..|++++  .+++|||+||...+
T Consensus       344 ------~~Hs~a~l~~dG~v~v~GG~~~~  366 (387)
T d1k3ia3         344 ------VYHSISLLLPDGRVFNGGGGLCG  366 (387)
T ss_dssp             ------CTTEEEEECTTSCEEEEECCCCT
T ss_pred             ------cceEEEEECCCCEEEEEeCCCcC
Confidence                  3455444  48899999996433

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.4e-11  Score=70.13  Aligned_cols=40  Identities=33%  Similarity=0.648  Sum_probs=37.6

Q ss_pred             ccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcch
Q 016239           10 FTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSF   49 (392)
Q Consensus        10 ~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f   49 (392)
                      |..||+|++.+||++||.+++.+++.|||+|+.++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            6789999999999999999999999999999999988764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.8e-07  Score=67.59  Aligned_cols=46  Identities=20%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             CcccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhHh
Q 016239            8 SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALI   53 (392)
Q Consensus         8 ~~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~~   53 (392)
                      ..+..||+||+..||++||+++++++..|||+|+.++.++.+++..
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~   62 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            3488899999999999999999999999999999999999988764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=2.4e-07  Score=66.64  Aligned_cols=44  Identities=25%  Similarity=0.453  Sum_probs=39.0

Q ss_pred             cccCCcHHHHHHHHhhCChhhHHHhhccchhhhhhhc-CcchhhH
Q 016239            9 AFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIIS-APSFSAL   52 (392)
Q Consensus         9 ~~~~Lp~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~-~~~f~~~   52 (392)
                      .++.||+||+++||+.|+.+++.++..|||+|+.++. ++.+.+.
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~   49 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   49 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            4788999999999999999999999999999999885 4665554

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2e-06  Score=63.72  Aligned_cols=44  Identities=34%  Similarity=0.491  Sum_probs=39.8

Q ss_pred             ccCCc----HHHHHHHHhhCChhhHHHhhccchhhhhhhcCcchhhHh
Q 016239           10 FTTLS----TDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALI   53 (392)
Q Consensus        10 ~~~Lp----~dl~~~iL~rLP~~~l~~~~~v~k~W~~l~~~~~f~~~~   53 (392)
                      +..||    +||+..||+.|+++++.++..|||+|+.++.++.+.+..
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~   58 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL   58 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            66677    599999999999999999999999999999999887763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.81  E-value=0.13  Score=44.44  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             CCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcc-eEEee-cceEEeecC----cceEecCCcCceeecCCC
Q 016239           62 RPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGS-CFIGA-NGFFFTTTP----RFGFSRILNTSWHLTSPL  135 (392)
Q Consensus        62 ~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~g~i~v~gg----~~~ynp~~~~~W~~~~~~  135 (392)
                      ++.+++.++.+     ..+..||..++++..+..+....... +++.. ++..++.++    +.+||.. +++|......
T Consensus        18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-~~~~~~~~~~   91 (371)
T d1k8kc_          18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTLVI   91 (371)
T ss_dssp             TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEEEC
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec-cccccccccc
Confidence            44455555533     35778898888776654443322222 23332 454444443    3678887 6777755433


Q ss_pred             CcCccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCc
Q 016239          136 RFSRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSS  215 (392)
Q Consensus       136 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~  215 (392)
                      .........+.+ .+              +++.++.|+.+         ....++.++...+.+......... +..   
T Consensus        92 ~~~~~~v~~i~~-~p--------------~~~~l~~~s~d---------~~i~i~~~~~~~~~~~~~~~~~~~-~~~---  143 (371)
T d1k8kc_          92 LRINRAARCVRW-AP--------------NEKKFAVGSGS---------RVISICYFEQENDWWVCKHIKKPI-RST---  143 (371)
T ss_dssp             CCCSSCEEEEEE-CT--------------TSSEEEEEETT---------SSEEEEEEETTTTEEEEEEECTTC-CSC---
T ss_pred             cccccccccccc-cc--------------ccccceeeccc---------Ccceeeeeeccccccccccccccc-ccc---
Confidence            322222222222 11              44555555431         222455556555555443221111 111   


Q ss_pred             cceeeEEE--CCEEEEEeecccEEEEEECCCCce
Q 016239          216 QYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVW  247 (392)
Q Consensus       216 ~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W  247 (392)
                        ...+.+  ++.+++.|+.++.+..||......
T Consensus       144 --v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~  175 (371)
T d1k8kc_         144 --VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV  175 (371)
T ss_dssp             --EEEEEECTTSSEEEEEETTSCEEEEECCCTTT
T ss_pred             --cccccccccccceeccccCcEEEEEeeccCcc
Confidence              222222  577788888888999999876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.78  E-value=0.43  Score=39.81  Aligned_cols=204  Identities=11%  Similarity=-0.066  Sum_probs=102.3

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEe-ecceEEeec--CcceEecCCcCceeecCCCCcCcc--CceEEEEEcCCC
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIG-ANGFFFTTT--PRFGFSRILNTSWHLTSPLRFSRI--NPLVGVFYDHDR  152 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~g~i~v~g--g~~~ynp~~~~~W~~~~~~~~~r~--~~~~~~~~~~~~  152 (392)
                      ..++.+|+++++-.... ++..  ..+++. .+|.+++..  |..+||+. +++.+.+........  ...-..+ +.  
T Consensus        40 ~~I~r~d~~~g~~~~~~-~~~~--~~~i~~~~dg~l~va~~~gl~~~d~~-tg~~~~l~~~~~~~~~~~~nd~~v-d~--  112 (295)
T d2ghsa1          40 RELHELHLASGRKTVHA-LPFM--GSALAKISDSKQLIASDDGLFLRDTA-TGVLTLHAELESDLPGNRSNDGRM-HP--  112 (295)
T ss_dssp             TEEEEEETTTTEEEEEE-CSSC--EEEEEEEETTEEEEEETTEEEEEETT-TCCEEEEECSSTTCTTEEEEEEEE-CT--
T ss_pred             CEEEEEECCCCeEEEEE-CCCC--cEEEEEecCCCEEEEEeCccEEeecc-cceeeEEeeeecCCCcccceeeEE-CC--
Confidence            56889999887654332 2221  122332 366665543  46899999 788877655433221  1112222 22  


Q ss_pred             CcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE---CCEEEE
Q 016239          153 GHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF---RGRFYV  229 (392)
Q Consensus       153 ~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~g~ly~  229 (392)
                                  ++.+|+--...       ......-..|....++-+.+..   ....      .....+   +..+|+
T Consensus       113 ------------~G~iw~~~~~~-------~~~~~~g~l~~~~~g~~~~~~~---~~~~------~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1         113 ------------SGALWIGTMGR-------KAETGAGSIYHVAKGKVTKLFA---DISI------PNSICFSPDGTTGYF  164 (295)
T ss_dssp             ------------TSCEEEEEEET-------TCCTTCEEEEEEETTEEEEEEE---EESS------EEEEEECTTSCEEEE
T ss_pred             ------------CCCEEEEeccc-------cccccceeEeeecCCcEEEEee---ccCC------cceeeecCCCceEEE
Confidence                        66777653221       0111122333333444444321   1111      223333   346888


Q ss_pred             EeecccEEEEEECCCCc--e----eecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          230 FGIYSFSVSSFDLKKHV--W----SEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       230 ~gg~~~~i~~yd~~~~~--W----~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      .....+.|++|+...+.  .    ......+. ...-....+..+|.|++....      ...|.+||++.+...++ .+
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~------~g~V~~~dp~G~~~~~i-~l  237 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARY-EV  237 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEE-EC
T ss_pred             eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC------CCceEEecCCCcEeeEe-cC
Confidence            87777899999864332  1    11111111 111122234458899987532      23677889987766554 44


Q ss_pred             CHHHHHhhcCCcccCccceeEEEE---eCCEEEEEecc
Q 016239          303 PHDFLYSLVDTEEDDKFASLKCVG---LGNLIYVFNEE  337 (392)
Q Consensus       303 p~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~gg~  337 (392)
                      |...              ..+|+.   ..++|||....
T Consensus       238 P~~~--------------~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         238 PGKQ--------------TTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SCSB--------------EEEEEEESTTSCEEEEEEBC
T ss_pred             CCCc--------------eEEEEEeCCCCCEEEEEECC
Confidence            5431              333333   23689998653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.38  E-value=0.61  Score=38.90  Aligned_cols=94  Identities=7%  Similarity=0.059  Sum_probs=49.7

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeec-ccCCC--Cccc--c
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEV-QTLRP--PGVM--F  260 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i-~~~~~--~~~~--~  260 (392)
                      .+.+||..+.+-...-...   ...     ...+..  ++.+++.|+..+.+..||..+++-... .....  ..+.  .
T Consensus       170 ~i~i~d~~~~~~~~~~~~~---~~~-----i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTFGEH---TKF-----VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             CEEEEETTTBEEEEEECCC---SSC-----EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             ccccccccccccccccccc---ccc-----ccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            5788887765432221111   110     223333  677888888888999999987643322 11111  1111  1


Q ss_pred             eeEE-eeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          261 SFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       261 ~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ..+. ..++++++.|+.++    .+.||  |..+.+
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg----~v~iw--d~~t~~  271 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADK----TIKIW--NVATLK  271 (311)
T ss_dssp             EEEEECTTSSEEEEEETTS----EEEEE--ETTTTE
T ss_pred             cccccCCCCCEEEEEeCCC----eEEEE--ECCCCc
Confidence            1222 23677777776443    68888  655543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.31  E-value=0.41  Score=39.85  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=36.1

Q ss_pred             CCCCEEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-cc-eEEeecC----cceEecCCcC
Q 016239           60 SPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NG-FFFTTTP----RFGFSRILNT  127 (392)
Q Consensus        60 ~~~~~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g-~i~v~gg----~~~ynp~~~~  127 (392)
                      ..++.+++.++.+     +.+..+|.++++-...-.++......+++.. +| .+|+.+.    +.+||.. +.
T Consensus         5 ~~~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~-t~   72 (346)
T d1jmxb_           5 KAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TC   72 (346)
T ss_dssp             CTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TT
T ss_pred             CCCCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc-cC
Confidence            3455566665543     5689999999875432233333333345544 44 5777754    3788877 44

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.23  E-value=0.35  Score=39.92  Aligned_cols=102  Identities=9%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecc-cEEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYS-FSVSSFD  241 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~-~~i~~yd  241 (392)
                      ++.+|+....           ...+.+||+..+....+...... .      ....+.+  +|.||+..... ..|..||
T Consensus       167 ~g~i~v~d~~-----------~~~V~~~d~~G~~~~~~g~~g~~-~------~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         167 KQEIFISDNR-----------AHCVKVFNYEGQYLRQIGGEGIT-N------YPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             SSEEEEEEGG-----------GTEEEEEETTCCEEEEESCTTTS-C------SEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ceeEEeeecc-----------ccceeeeecCCceeeeecccccc-c------CCcccccccCCeEEEEECCCCcEEEEEC
Confidence            6788888653           23688999876655555421111 1      1333344  67899986543 4789999


Q ss_pred             CCCCcee-ecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEee
Q 016239          242 LKKHVWS-EVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       242 ~~~~~W~-~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      +. .++. .+........-....+..+|.||+..+ +    ..+.+|+|.
T Consensus       229 ~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~-n----~~v~~fr~~  272 (279)
T d1q7fa_         229 QD-GQLISALESKVKHAQCFDVALMDDGSVVLASK-D----YRLYIYRYV  272 (279)
T ss_dssp             TT-SCEEEEEEESSCCSCEEEEEEETTTEEEEEET-T----TEEEEEECS
T ss_pred             CC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeC-C----CeEEEEEee
Confidence            75 4432 222211111112222444788887542 1    268888774

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.71  E-value=0.14  Score=44.25  Aligned_cols=116  Identities=10%  Similarity=0.035  Sum_probs=71.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE-CCEEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF-RGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~i~~yd~~  243 (392)
                      +++++++|+.+           ..+.+||..++++..+..+... ...    -.+.+.. ++.+.+.|+.++.|..+|+.
T Consensus        18 dg~~la~~~~~-----------~~i~iw~~~~~~~~~~~~l~gH-~~~----V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          18 DRTQIAICPNN-----------HEVHIYEKSGNKWVQVHELKEH-NGQ----VTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             TSSEEEEECSS-----------SEEEEEEEETTEEEEEEEEECC-SSC----EEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEEeCC-----------CEEEEEECCCCCEEEEEEecCC-CCC----EEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            66777777641           2588999888888776544321 111    1222222 57777778888899999999


Q ss_pred             CCceeecccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          244 KHVWSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       244 ~~~W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      +++|...............+. .-+++.+++|..++    .+.+|.++.....+....
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKH  135 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeecccC----cceeeeeecccccccccc
Confidence            999887654433222222222 23677777665332    688998887766655443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.63  Score=38.30  Aligned_cols=97  Identities=19%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             EEEEEeCCCCCeec-CCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceee-cccCCCCccc--ceeE
Q 016239          188 AVEIYDPHSDSWEL-CPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRPPGVM--FSFL  263 (392)
Q Consensus       188 ~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~~~~~--~~~~  263 (392)
                      .+.+||....+-.. +...... ...     ......++.+++.|+.++.|..||+.+++... +.........  ...+
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v  311 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKH-QSA-----VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  311 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSC-SSC-----EEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             EEEEEeccccccccccccccee-eec-----eeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEE
Confidence            58888876654322 2221111 111     34456688888889988999999998876432 2222221111  1122


Q ss_pred             Eee-CCeEEEEEeecCCCCCceeEEEee
Q 016239          264 IAS-PNMLVLAGMCNAPRGPSFNLWKVD  290 (392)
Q Consensus       264 ~~~-~g~l~v~gg~~~~~~~~~~v~~~d  290 (392)
                      ... ++.+++.|+.++.....+.+|-||
T Consensus       312 ~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         312 RASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            223 455556665443333345666444

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.47  Score=36.91  Aligned_cols=62  Identities=13%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----ccc-CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQT-LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~~-~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++++|+|-|.  ..++||..+++-..     |.. .+..+....++...+|++|++-|        ...|+||..+++
T Consensus       116 ~~~~Y~FkG~--~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~~iDAAf~~~g~~YfFkg--------~~y~r~~~~~~~  183 (195)
T d1su3a2         116 TGKTYFFVAN--KYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHG--------TRQYKFDPKTKR  183 (195)
T ss_dssp             TTEEEEEETT--EEEEEETTTTEECSSCSEEHHHHSTTSCSCCSEEEEETTEEEEEET--------TEEEEEETTTTE
T ss_pred             CCeEEEEeCC--EEEEEeccCccccCCcccccccccCCCCCCccEEEEECCeEEEEEC--------CEEEEEeCCcCE
Confidence            5799999884  78999988764221     111 11111122233456999999874        367888876654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.56  E-value=0.7  Score=37.48  Aligned_cols=66  Identities=11%  Similarity=0.001  Sum_probs=32.1

Q ss_pred             CEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          225 GRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       225 g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +.+|+.+.....+..++....+.......... .....+...+..+|+.+....    ...|+++|..+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~v~~~~~~----~~~v~v~D~~t~~  235 (301)
T d1l0qa2         170 TKVYVANFDSMSISVIDTVTNSVIDTVKVEAA-PSGIAVNPEGTKAYVTNVDKY----FNTVSMIDTGTNK  235 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSSE-EEEEEECTTSSEEEEEEECSS----CCEEEEEETTTTE
T ss_pred             cceeeecccccccccccccceeeeecccccCC-cceeeccccccccccccccce----eeeeeeeecCCCe
Confidence            45666665556777777776655444322221 111111222455565543221    2345555876654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.41  E-value=1  Score=36.77  Aligned_cols=107  Identities=14%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEE-ECCEEEEEeecccEEEEEECC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSAL-FRGRFYVFGIYSFSVSSFDLK  243 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~i~~yd~~  243 (392)
                      ++.+|+....           ...+.+|++....-........ ...     ....+. -+|.+|+.....+.|..||..
T Consensus       124 ~G~i~v~~~~-----------~~~~~~~~~~g~~~~~~g~~~~-~~~-----~~~i~~d~~g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         124 KGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCSKH-LEF-----PNGVVVNDKQEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             TSCEEEEETT-----------TTEEEEECTTSCEEEEEECTTT-CSS-----EEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             CCcEEEEeec-----------cceeeEeccCCceeeccccccc-ccc-----cceeeeccceeEEeeeccccceeeeecC
Confidence            5678877432           2257778876543333221111 111     122222 357899998888899999998


Q ss_pred             CCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          244 KHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       244 ~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .+....+....... ....+ +..+|+|||.....     ...|.+|+++.+
T Consensus       187 G~~~~~~g~~g~~~-~P~giavD~~G~i~Vad~~~-----~~~v~~f~~~G~  232 (279)
T d1q7fa_         187 GQYLRQIGGEGITN-YPIGVGINSNGEILIADNHN-----NFNLTIFTQDGQ  232 (279)
T ss_dssp             CCEEEEESCTTTSC-SEEEEEECTTCCEEEEECSS-----SCEEEEECTTSC
T ss_pred             Cceeeeeccccccc-CCcccccccCCeEEEEECCC-----CcEEEEECCCCC
Confidence            77666654322211 11223 33478999875322     123445576543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=1.2  Score=37.22  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=35.7

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ++...+.|+..+.+..||..+..-.....  ............++++++.|+.++    .+.+|  |..+
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~v~~s~~g~~l~s~s~Dg----~i~iw--d~~~  296 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDN----LLNAW--RTPY  296 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEEEECC--CSSCEEEEEECTTSSEEEEEETTS----EEEEE--ETTT
T ss_pred             cccccceeccccccccccccccccccccc--cccccceEEECCCCCEEEEEeCCC----eEEEE--ECCC
Confidence            56677778888899999997765332211  111111212234777777776433    57777  5443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.17  E-value=1.3  Score=36.81  Aligned_cols=62  Identities=10%  Similarity=-0.001  Sum_probs=34.9

Q ss_pred             EEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          226 RFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       226 ~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .+++.|+..+.|..||..+.+-.......... .......-++++++.|+.++    .+.+|  |..+.
T Consensus       160 ~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~-i~~v~~~p~~~~l~~~~~d~----~v~~~--d~~~~  221 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF-VHSVRYNPDGSLFASTGGDG----TIVLY--NGVDG  221 (311)
T ss_dssp             CEEEEEETTSCEEEEETTTBEEEEEECCCSSC-EEEEEECTTSSEEEEEETTS----CEEEE--ETTTC
T ss_pred             eeeccccccccccccccccccccccccccccc-ccccccCccccccccccccc----ccccc--ccccc
Confidence            35667888889999999876543332211111 11212223677777776443    57777  55443

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=1  Score=34.81  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=57.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCee---cCCC--CCCCCCCCCCccceeeEEE---CCEEEEEeecccE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWE---LCPP--LPADFRSGYSSQYLSSALF---RGRFYVFGIYSFS  236 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~--~~~~~~~~~~~~~~~~~~~---~g~ly~~gg~~~~  236 (392)
                      ++++|++-|.             .+++|+..+....   .+..  +|....      ...++..   ++++|+|-|  +.
T Consensus        64 ~~~~yffkg~-------------~~w~y~~~~~~~gyPk~i~~~~~~~~~~------~idaA~~~~~~~~~y~Fkg--~~  122 (192)
T d1pexa_          64 HDLIFIFRGR-------------KFWALNGYDILEGYPKKISELGLPKEVK------KISAAVHFEDTGKTLLFSG--NQ  122 (192)
T ss_dssp             TTEEEEEETT-------------EEEEESTTCCCTTCSEESTTTTCCTTCC------CCCEEEECTTTSEEEEEET--TE
T ss_pred             CCEEEEEcCC-------------EEEEEcCCcccCCCCeEeeeeecCCCCC------CccEEEEECCCCEEEEEeC--CE
Confidence            6789998776             5888875443331   2222  111111      1223332   689999977  47


Q ss_pred             EEEEECCCCceee-----ccc-CCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          237 VSSFDLKKHVWSE-----VQT-LRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       237 i~~yd~~~~~W~~-----i~~-~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      .+.||..++.-..     |.. .+. +....+ +...+|++|++-|        .+.|+||..+++
T Consensus       123 y~~y~~~~~~~~~~~pk~I~~~w~gvp~~vdA-a~~~~g~~YfF~g--------~~y~r~~~~~~~  179 (192)
T d1pexa_         123 VWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDA-VYEKNGYIYFFNG--------PIQFEYSIWSNR  179 (192)
T ss_dssp             EEEEETTTTEECSSCCCBHHHHSTTSCSCCSE-EEEETTEEEEEET--------TEEEEEETTTTE
T ss_pred             EEEEcCccccccCCCcEEHhhcCCCCCCCceE-EEEeCCEEEEEEC--------CEEEEEeCCcCe
Confidence            8999987764221     211 111 122223 3456999999974        367788876654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.86  E-value=1.3  Score=35.90  Aligned_cols=66  Identities=17%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++.+++.|+..+.|..||+.+++...+................+++.++.++.+.    .+.+|  |..+..
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~--~~~~~~  212 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR----KVIPY--SVANNF  212 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEE--EGGGTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccc--cccccc
Confidence            5778888888899999999887765543322111111111223566666665332    45666  665544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.65  E-value=0.44  Score=39.04  Aligned_cols=91  Identities=9%  Similarity=0.039  Sum_probs=50.1

Q ss_pred             EEEEEeCCCCCeecC-CCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEECCCCceeecccCCC-CcccceeE
Q 016239          188 AVEIYDPHSDSWELC-PPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP-PGVMFSFL  263 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~-~~~~~~~~  263 (392)
                      .+.+||..++..... ..+... ...     ...+.+  ++.+++.|+.++.|..||+.+.+...+..... .......+
T Consensus       202 ~i~~~~~~~~~~~~~~~~~~~h-~~~-----v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  275 (299)
T d1nr0a2         202 KVIPYSVANNFELAHTNSWTFH-TAK-----VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV  275 (299)
T ss_dssp             CEEEEEGGGTTEESCCCCCCCC-SSC-----EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE
T ss_pred             cccccccccccccccccccccc-ccc-----cccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE
Confidence            588888876654332 222211 111     222222  67788888888999999998776544322211 11112223


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEE
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      +..++..++.++.+.    .+.+|.
T Consensus       276 ~~~~~~~l~s~s~D~----~i~iWd  296 (299)
T d1nr0a2         276 IWLNETTIVSAGQDS----NIKFWN  296 (299)
T ss_dssp             EEEETTEEEEEETTS----CEEEEE
T ss_pred             EECCCCEEEEEeCCC----EEEEEe
Confidence            444666666666443    688883

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.42  E-value=1.3  Score=34.26  Aligned_cols=76  Identities=13%  Similarity=-0.018  Sum_probs=46.3

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEecccCC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIMP  303 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~p  303 (392)
                      ++++|+|-|.  ..+.||..++.=.. ...+......++ +..+|++|++-|        .+-|+||..+.+  ....-|
T Consensus       110 ~~~~yfFkg~--~yw~yd~~~~~~~~-~~w~gip~~daA-~~~~g~~YfFkg--------~~y~r~~~~~~~--v~~gYP  175 (192)
T d1qhua1         110 DEGILFFQGN--RKWFWDLTTGTKKE-RSWPAVGNCTSA-LRWLGRYYCFQG--------NQFLRFNPVSGE--VPPGYP  175 (192)
T ss_dssp             SSEEEEEETT--EEEEEETTTTEEEE-ECCTTSCCCSEE-EEETTEEEEEET--------TEEEEECTTTCC--CCTTCC
T ss_pred             CCeEEEEeCC--eEEEEeCCCCCccc-ccccCcCCccee-EEeCCcEEEEEC--------CEEEEEcCCcce--EcCCCC
Confidence            7899999874  78999988763111 111111122233 456999999864        467888877654  223356


Q ss_pred             HHHHHhhcCC
Q 016239          304 HDFLYSLVDT  313 (392)
Q Consensus       304 ~~~~~~~~~~  313 (392)
                      ..+...|++.
T Consensus       176 k~i~~~wl~C  185 (192)
T d1qhua1         176 LDVRDYFLSC  185 (192)
T ss_dssp             EEHHHHTSCC
T ss_pred             hhhhhhccCC
Confidence            6666666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.29  E-value=1.9  Score=35.96  Aligned_cols=206  Identities=9%  Similarity=-0.053  Sum_probs=99.7

Q ss_pred             CCCCCEEEEEcccCC--CCCCCceeeeeCCCCceeeCCCCCCCC---CcceEEee--cceEEeecC---cceEecCCcCc
Q 016239           59 ASPRPWFFLFGLHNT--SSRNNQSFAFDPASNSWFHLPPAQEPR---AGSCFIGA--NGFFFTTTP---RFGFSRILNTS  128 (392)
Q Consensus        59 ~~~~~~l~~~gg~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~r---~~~~~~~~--~g~i~v~gg---~~~ynp~~~~~  128 (392)
                      ...++.+|+......  .....+++.+|+.++.+..........   ...+++..  ++++|+...   ..++++. +..
T Consensus        25 ~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~-g~~  103 (314)
T d1pjxa_          25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTF  103 (314)
T ss_dssp             ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCE
T ss_pred             EeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC-CcE
Confidence            344566666533211  112356899999998876543221111   11234443  457887753   4788887 444


Q ss_pred             eeecCCCCcCcc---CceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcc----cccccceEEEEEeCCCCCeec
Q 016239          129 WHLTSPLRFSRI---NPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGL----VDIEDRLAVEIYDPHSDSWEL  201 (392)
Q Consensus       129 W~~~~~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~----~~~~~~~~~~~yd~~~~~W~~  201 (392)
                      ...+......+.   -..++ + +.              ++.+|+---.......    ........++.+++. ++...
T Consensus       104 ~~~~~~~~~g~~~~~pndl~-~-d~--------------~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~  166 (314)
T d1pjxa_         104 EEIAKKDSEGRRMQGCNDCA-F-DY--------------EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             EECCSBCTTSCBCBCCCEEE-E-CT--------------TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             EEEEeccccccccCCCcEEE-E-CC--------------CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE
Confidence            333322222211   11222 2 22              6788885311000000    001123367778764 34444


Q ss_pred             CC-CCCCCCCCCCCccceeeEE-ECC-----EEEEEeecccEEEEEECCCCc---eeec-ccCCCCcc-cceeE-EeeCC
Q 016239          202 CP-PLPADFRSGYSSQYLSSAL-FRG-----RFYVFGIYSFSVSSFDLKKHV---WSEV-QTLRPPGV-MFSFL-IASPN  268 (392)
Q Consensus       202 ~~-~~~~~~~~~~~~~~~~~~~-~~g-----~ly~~gg~~~~i~~yd~~~~~---W~~i-~~~~~~~~-~~~~~-~~~~g  268 (392)
                      +. .+..+         ...+. -++     .||+.....+.|++||...+.   ...+ ...+.... ....+ +..+|
T Consensus       167 ~~~~~~~p---------NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G  237 (314)
T d1pjxa_         167 VDTAFQFP---------NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             EEEEESSE---------EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             eeCCccee---------eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence            32 22111         12222 222     588887777899999875441   1211 12221111 11123 34589


Q ss_pred             eEEEEEeecCCCCCceeEEEeecCccceE
Q 016239          269 MLVLAGMCNAPRGPSFNLWKVDELSMEFS  297 (392)
Q Consensus       269 ~l~v~gg~~~~~~~~~~v~~~d~~~~~W~  297 (392)
                      +||+....      ...|++||+++..-.
T Consensus       238 nlyVa~~~------~g~I~~~dp~~g~~~  260 (314)
T d1pjxa_         238 NLLVANWG------SSHIEVFGPDGGQPK  260 (314)
T ss_dssp             CEEEEEET------TTEEEEECTTCBSCS
T ss_pred             cEEEEEcC------CCEEEEEeCCCCEEE
Confidence            99987532      346778899876543

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=1.6  Score=33.74  Aligned_cols=98  Identities=9%  Similarity=0.070  Sum_probs=53.8

Q ss_pred             CCEEEEEeecccEEEEEECCCCce-eeccc--CCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccceEec
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVW-SEVQT--LRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEI  299 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W-~~i~~--~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~  299 (392)
                      ++++|+|-|.  .+++|+-.+-.- ..|..  ++. .....++....+|++|++-|        ...|+||..+++  ..
T Consensus        64 ~~k~yfFkg~--~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG--------~~y~ryd~~~~~--v~  131 (195)
T d1itva_          64 SKKLFFFSGR--QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQM--VD  131 (195)
T ss_dssp             TCCEEEEETT--EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTE--EC
T ss_pred             CCEEEEEecC--EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec--------cEEEEEeCCccc--cc
Confidence            5789999763  678887432111 12222  111 11223333344789999964        367999887653  22


Q ss_pred             ccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEecc
Q 016239          300 AIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEE  337 (392)
Q Consensus       300 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~  337 (392)
                      ..-|..+...|-+...    ..-++....+.+|++-|.
T Consensus       132 ~gyPk~i~~~w~gvp~----~idaAf~~~~~~Yffkg~  165 (195)
T d1itva_         132 PRSASEVDRMFPGVPL----DTHDVFQFREKAYFCQDR  165 (195)
T ss_dssp             GGGCEEHHHHSTTSCS----SCSEEEEETTEEEEEETT
T ss_pred             CCCccchhhhcCCCCC----CCcEEEEeCCcEEEEECC
Confidence            2334444444443321    134555568889999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=2.3  Score=34.79  Aligned_cols=91  Identities=11%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeC
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASP  267 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~  267 (392)
                      .+.+||..++.-...-.....   .     ..++..++...+.|+.++.|..||..+.+-.....  ............+
T Consensus       224 ~i~i~d~~~~~~~~~~~~h~~---~-----v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~  293 (355)
T d1nexb2         224 TIRIWDLENGELMYTLQGHTA---L-----VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVS  293 (355)
T ss_dssp             CEEEEETTTCCEEEEECCCSS---C-----CCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEEEC
T ss_pred             eEEeeeccccccccccccccc---c-----ccccccccceeeeeecccccccccccccceecccc--cCCceEEEEEcCC
Confidence            577888776543322111111   1     34456678888888888999999997764222111  1111112234457


Q ss_pred             CeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          268 NMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       268 g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +++++.|. ++    .+.+|  |..+.+
T Consensus       294 ~~~l~~g~-d~----~i~vw--d~~tg~  314 (355)
T d1nexb2         294 DNILVSGS-EN----QFNIY--NLRSGK  314 (355)
T ss_dssp             SSEEEEEE-TT----EEEEE--ETTTCC
T ss_pred             CCEEEEEe-CC----EEEEE--ECCCCC
Confidence            77766653 32    67888  766554

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=1.8  Score=33.42  Aligned_cols=109  Identities=8%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCce---eeccc---CCC-CcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVW---SEVQT---LRP-PGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W---~~i~~---~~~-~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ++++|+|-|.  ..++|+-.+...   ..+..   ++. .....+++.. .++++|++-|        ...|+||..+++
T Consensus        67 ~~~~yfFkG~--~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG--------~~y~ry~~~~~~  136 (195)
T d1su3a2          67 RDEVRFFKGN--KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRS  136 (195)
T ss_dssp             GTEEEEEETT--EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTE
T ss_pred             CcEEEEECCc--EEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC--------CEEEEEeccCcc
Confidence            5899999884  788888533221   11110   111 1111223222 2689999975        367999887653


Q ss_pred             eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          296 FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       296 W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                        ....-|..+...|-+...    ..-++...++++|++-|..       ++.+|+.+.+
T Consensus       137 --vd~gyPk~I~~~w~Gvp~----~iDAAf~~~g~~YfFkg~~-------y~r~~~~~~~  183 (195)
T d1su3a2         137 --MDPGYPKMIAHDFPGIGH----KVDAVFMKDGFFYFFHGTR-------QYKFDPKTKR  183 (195)
T ss_dssp             --ECSSCSEEHHHHSTTSCS----CCSEEEEETTEEEEEETTE-------EEEEETTTTE
T ss_pred             --ccCCcccccccccCCCCC----CccEEEEECCeEEEEECCE-------EEEEeCCcCE
Confidence              334456555555554432    1234556789999998742       3455655444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=2.6  Score=35.34  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.+++.|+.+           ..+.+||..+......-........++... ...+.+  ++...+.|+.++.|..||.
T Consensus       216 ~~~~l~~~~~d-----------~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~d~~i~iwd~  283 (388)
T d1erja_         216 DGKYIAAGSLD-----------RAVRVWDSETGFLVERLDSENESGTGHKDS-VYSVVFTRDGQSVVSGSLDRSVKLWNL  283 (388)
T ss_dssp             TCCEEEEEETT-----------SCEEEEETTTCCEEEEEC------CCCSSC-EEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCeEEEEcCC-----------CeEEEeecccCccceeeccccccccCCCCC-EEEEEECCCCCEEEEEECCCcEEEEec
Confidence            55666666541           157788887665432211111001110001 122222  5677778888889999998


Q ss_pred             CCCce
Q 016239          243 KKHVW  247 (392)
Q Consensus       243 ~~~~W  247 (392)
                      .+..-
T Consensus       284 ~~~~~  288 (388)
T d1erja_         284 QNANN  288 (388)
T ss_dssp             -----
T ss_pred             cCCcc
Confidence            76543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.37  E-value=0.75  Score=42.22  Aligned_cols=124  Identities=11%  Similarity=0.041  Sum_probs=71.2

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCC-------CcccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRP-------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~-------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      .+.++.+|+||+... .+.|+++|.++.  .|+.-+....       ........+..+++||+...       ...++.
T Consensus        60 stPiv~~g~vyv~t~-~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~g~l~A  131 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMS-WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIA  131 (560)
T ss_dssp             CCCEEETTEEEEEEG-GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEE
T ss_pred             eCCEEECCEEEEECC-CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------CCEEEE
Confidence            567899999998765 468999999876  6874322111       11222335667888877642       346777


Q ss_pred             eecCcc--ceEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239          289 VDELSM--EFSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR  362 (392)
Q Consensus       289 ~d~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~  362 (392)
                      +|..+.  .|+....-+....           ....+-.+.++.+++-+.......+=.+.-+|.+|++  ..|+.
T Consensus       132 lda~tG~~~w~~~~~~~~~~~-----------~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~--~~W~~  194 (560)
T d1kv9a2         132 LDAKTGKAIWSQQTTDPAKPY-----------SITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK--LAWRF  194 (560)
T ss_dssp             EETTTCCEEEEEECSCTTSSC-----------BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC--EEEEE
T ss_pred             EECCCCcEEeccCccCcccce-----------eeeeeeeeecCcccccccceeccccceEEEEECCCce--EEeee
Confidence            786654  3765332221110           1133455788888775432222222233444888887  55665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=2.7  Score=34.78  Aligned_cols=66  Identities=17%  Similarity=0.137  Sum_probs=39.2

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-cccCCCCccc-ceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRPPGVM-FSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~~~~~-~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      .+.+++.|+.++.|..||..+++... +......-.. ...+...+|++++.++.++    .+.||  |..+.+
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~----~i~iw--d~~~~~  284 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA----TIRVW--DVTTSK  284 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS----EEEEE--ETTTTE
T ss_pred             cceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC----eEEEE--ECCCCC
Confidence            35788888888999999998776433 2211111111 1112234677777776443    68888  666554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=2.6  Score=34.16  Aligned_cols=94  Identities=14%  Similarity=0.093  Sum_probs=52.9

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEeeC
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIASP  267 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~~~  267 (392)
                      .+.+||..+.+-........   ..     ..++..++.+++.|+.++.|..||..+.+-...-............+..+
T Consensus       198 ~i~~~d~~~~~~~~~~~~~~---~~-----v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         198 SIRVWDVETGNCIHTLTGHQ---SL-----TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  269 (342)
T ss_dssp             CEEEEETTTCCEEEEECCCC---SC-----EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             eEEEeecccceeeeEecccc---cc-----eeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC
Confidence            57888876654322211111   11     33445566777888888999999997765433222121112222234557


Q ss_pred             CeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          268 NMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       268 g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      +.+++.|+.++    .+.+|  |..+.+
T Consensus       270 ~~~~~s~s~Dg----~i~iw--d~~tg~  291 (342)
T d2ovrb2         270 KNFVITSSDDG----TVKLW--DLKTGE  291 (342)
T ss_dssp             SSEEEEEETTS----EEEEE--ETTTCC
T ss_pred             CCeeEEEcCCC----EEEEE--ECCCCC
Confidence            77777776443    68888  666554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.59  E-value=3.2  Score=34.51  Aligned_cols=187  Identities=11%  Similarity=0.005  Sum_probs=93.7

Q ss_pred             CceeeeeCCCCceeeCCCCCCCCCcceEEee-cceEEeec--------CcceEecCCcCceeec-CCCCcCccCceEEEE
Q 016239           78 NQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-NGFFFTTT--------PRFGFSRILNTSWHLT-SPLRFSRINPLVGVF  147 (392)
Q Consensus        78 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~g~i~v~g--------g~~~ynp~~~~~W~~~-~~~~~~r~~~~~~~~  147 (392)
                      ..++.+||..+....... +.....++++.. +|.+|+..        +....++. +.....+ ...... ....-..+
T Consensus        61 g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~-~~~nd~~~  137 (319)
T d2dg1a1          61 GNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIEDLSTA-YCIDDMVF  137 (319)
T ss_dssp             CEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEECSSSSC-CCEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC-CceeeeeccCCCcc-cCCcceeE
Confidence            567889988775433211 111122345444 77888762        13556665 3443322 222211 11111222


Q ss_pred             EcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCC-CCCCCCCCCCCccceeeEEE--C
Q 016239          148 YDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCP-PLPADFRSGYSSQYLSSALF--R  224 (392)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~--~  224 (392)
                       +.              ++.+|+-.-..     ........+..+++.....+.+. .+..          .....+  +
T Consensus       138 -d~--------------~G~l~vtd~~~-----~~~~~~g~v~~~~~dg~~~~~~~~~~~~----------pnGia~s~d  187 (319)
T d2dg1a1         138 -DS--------------KGGFYFTDFRG-----YSTNPLGGVYYVSPDFRTVTPIIQNISV----------ANGIALSTD  187 (319)
T ss_dssp             -CT--------------TSCEEEEECCC-----BTTBCCEEEEEECTTSCCEEEEEEEESS----------EEEEEECTT
T ss_pred             -Ee--------------ccceeeccccc-----ccccCcceeEEEecccceeEEEeeccce----------eeeeeeccc
Confidence             22              66788753210     01123446888888777666543 2222          233333  3


Q ss_pred             -CEEEEEeecccEEEEEECCCCc---e---eecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          225 -GRFYVFGIYSFSVSSFDLKKHV---W---SEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       225 -g~ly~~gg~~~~i~~yd~~~~~---W---~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                       +.||+.....+.|++||...+.   .   ............-..+ +..+|+||+....      ...|.+||++.+.-
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~------~g~V~~~~p~G~~l  261 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPI  261 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC------CCEEEEECCCCcEE
Confidence             4699998778899999876442   1   1111111111111223 3458899987642      34677889876544


Q ss_pred             EecccCCH
Q 016239          297 SEIAIMPH  304 (392)
Q Consensus       297 ~~~~~~p~  304 (392)
                      .++ .+|.
T Consensus       262 ~~i-~~P~  268 (319)
T d2dg1a1         262 GQI-LIPG  268 (319)
T ss_dssp             EEE-ECTT
T ss_pred             EEE-eCCC
Confidence            433 4454

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=2.2  Score=32.70  Aligned_cols=109  Identities=12%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             CCEEEEEeecccEEEEEECCCCcee---ecccCC-C--CcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccce
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWS---EVQTLR-P--PGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEF  296 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~---~i~~~~-~--~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W  296 (392)
                      ++++|++-|.  ..++|+..+....   .+.... +  .....+++.. .++++|++-|        ...|+||..++. 
T Consensus        64 ~~~~yffkg~--~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg--------~~y~~y~~~~~~-  132 (192)
T d1pexa_          64 HDLIFIFRGR--KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHI-  132 (192)
T ss_dssp             TTEEEEEETT--EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTE-
T ss_pred             CCEEEEEcCC--EEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC--------CEEEEEcCcccc-
Confidence            6889999874  6788876543321   222211 1  1111222221 3689999864        357899876543 


Q ss_pred             EecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCc
Q 016239          297 SEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDK  355 (392)
Q Consensus       297 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~  355 (392)
                       .....|..+...|-+...    ..-++...++++|++-|..       ++++|..+.+
T Consensus       133 -~~~~~pk~I~~~w~gvp~----~vdAa~~~~g~~YfF~g~~-------y~r~~~~~~~  179 (192)
T d1pexa_         133 -MDKDYPRLIEEDFPGIGD----KVDAVYEKNGYIYFFNGPI-------QFEYSIWSNR  179 (192)
T ss_dssp             -ECSSCCCBHHHHSTTSCS----CCSEEEEETTEEEEEETTE-------EEEEETTTTE
T ss_pred             -ccCCCcEEHhhcCCCCCC----CceEEEEeCCEEEEEECCE-------EEEEeCCcCe
Confidence             222334444444444321    1234556799999998732       3555655544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=91.49  E-value=3.1  Score=34.16  Aligned_cols=70  Identities=9%  Similarity=-0.056  Sum_probs=41.2

Q ss_pred             eEEECCEEEEEeecccEEEEEECCCCceeecccCC-CCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc
Q 016239          220 SALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLR-PPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME  295 (392)
Q Consensus       220 ~~~~~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~-~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~  295 (392)
                      ....++.+|+.....+.|+.||.....-....... ....-....+..+|.||+....      ...|++++++.+.
T Consensus       170 i~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~------~~~V~~i~p~G~~  240 (302)
T d2p4oa1         170 LKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRIAPDRST  240 (302)
T ss_dssp             EEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEECTTCCE
T ss_pred             ccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC------CCcEEEECCCCCE
Confidence            34557889998887889999998665321111110 0011112234458899987632      2457888887764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.51  E-value=1.3  Score=40.58  Aligned_cols=125  Identities=11%  Similarity=0.073  Sum_probs=71.5

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECC-C--CceeecccCCC-------CcccceeEEeeCCeEEEEEeecCCCCCceeEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLK-K--HVWSEVQTLRP-------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLW  287 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~-~--~~W~~i~~~~~-------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~  287 (392)
                      .+.++.+|+||+..+..+.|++.|.. +  ..|+.-+..+.       .......++..+++||+...       ...++
T Consensus        56 ~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------~g~l~  128 (571)
T d2ad6a1          56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLL  128 (571)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred             cCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-------CCcEE
Confidence            46778899999998766789999963 3  47875432221       11111234667888887532       34677


Q ss_pred             EeecCccc--eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239          288 KVDELSME--FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR  362 (392)
Q Consensus       288 ~~d~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~  362 (392)
                      .+|.++.+  |+.--.-+...    .       ....+-++.+++||+-....+....=.+.-+|..|++  ..|+.
T Consensus       129 alda~tG~~~w~~~~~~~~~~----~-------~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~--~~W~~  192 (571)
T d2ad6a1         129 ALDAKTGKINWEVEVCDPKVG----S-------TLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE--LKWRA  192 (571)
T ss_dssp             EEETTTCCEEEEEECCCGGGT----C-------BCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC--EEEEE
T ss_pred             eeehhhhhhhccccccccccc----c-------ceeecCeEeCCeEEEeeccccccccCcEEEEECCCCc--EEEEE
Confidence            88887764  65421111110    0       1133446788999875543322222223334888877  66864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.25  E-value=3.6  Score=32.84  Aligned_cols=91  Identities=10%  Similarity=-0.013  Sum_probs=53.3

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEEe-eCCeEEEEEeecCCCCCceeEEEeecCccceEecccC
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLIA-SPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIAIM  302 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~~~  302 (392)
                      +|.+|+.......|..||+.......+.....  .....++. .+|.||+....      ...|.++++.+...+.+..-
T Consensus       150 ~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~--~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~  221 (260)
T d1rwia_         150 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI--TAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFT  221 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEECCCSSC--CSEEEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCC
T ss_pred             CCCEeeeccccccccccccccceeeeeecccc--CCCccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccC
Confidence            67899887777899999998765444432221  11122333 47899887632      34577778776655444322


Q ss_pred             CHHHHHhhcCCcccCccceeEEEEe-CCEEEEEec
Q 016239          303 PHDFLYSLVDTEEDDKFASLKCVGL-GNLIYVFNE  336 (392)
Q Consensus       303 p~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~gg  336 (392)
                      +.              ....+++.. ++.|||...
T Consensus       222 ~~--------------~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         222 GL--------------NTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             SC--------------CCEEEEEECTTCCEEEEEG
T ss_pred             CC--------------CCeEEEEEeCCCCEEEEEC
Confidence            11              123444443 468999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=90.17  E-value=3.6  Score=32.77  Aligned_cols=143  Identities=11%  Similarity=0.005  Sum_probs=70.1

Q ss_pred             EEEEEcccCCCCCCCceeeeeCCCCceeeCCCCCCCCCcceEEee-c-ceEEeecC----cceEecCCcCceeecCCCCc
Q 016239           64 WFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGA-N-GFFFTTTP----RFGFSRILNTSWHLTSPLRF  137 (392)
Q Consensus        64 ~l~~~gg~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~-g~i~v~gg----~~~ynp~~~~~W~~~~~~~~  137 (392)
                      ++|+.+..+     ..+..+|+++++....  ++.....+.++.. + ..||+.+.    +.+||.. +++-.  ..++.
T Consensus         3 ~~yV~~~~~-----~~v~v~D~~t~~~~~~--i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~-t~~~~--~~~~~   72 (301)
T d1l0qa2           3 FAYIANSES-----DNISVIDVTSNKVTAT--IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVI--ATVPA   72 (301)
T ss_dssp             EEEEEETTT-----TEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEE--EEEEC
T ss_pred             EEEEEECCC-----CEEEEEECCCCeEEEE--EECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcee--eeeec
Confidence            566664432     4578899998876432  2222222345544 4 46777653    4788987 44322  22222


Q ss_pred             CccCceEEEEEcCCCCcccccCCcccCCCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccc
Q 016239          138 SRINPLVGVFYDHDRGHCDLASGFACNLPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQY  217 (392)
Q Consensus       138 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~  217 (392)
                      ....+.+...  .             ++..+++.+..           ...+.++|..+++-...-.....        .
T Consensus        73 ~~~~~~~~~~--~-------------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--------~  118 (301)
T d1l0qa2          73 GSSPQGVAVS--P-------------DGKQVYVTNMA-----------SSTLSVIDTTSNTVAGTVKTGKS--------P  118 (301)
T ss_dssp             SSSEEEEEEC--T-------------TSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECSSS--------E
T ss_pred             cccccccccc--c-------------ccccccccccc-----------cceeeecccccceeeeecccccc--------c
Confidence            2111222222  1             14455554432           12466777766643322111111        0


Q ss_pred             eeeEEE-CC-EEEEEeecccEEEEEECCCCceeec
Q 016239          218 LSSALF-RG-RFYVFGIYSFSVSSFDLKKHVWSEV  250 (392)
Q Consensus       218 ~~~~~~-~g-~ly~~gg~~~~i~~yd~~~~~W~~i  250 (392)
                      ...... +| .+++.+.....+..+|..+.+....
T Consensus       119 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2         119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            222222 44 4555555567788889887765443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.07  E-value=5  Score=32.84  Aligned_cols=112  Identities=16%  Similarity=0.126  Sum_probs=62.7

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      +++..++.|.+         ....+.+||..++.-+.+......         ...+.+  +|+..++++..+.+..+|.
T Consensus        53 Dg~~l~~~~~~---------~g~~v~v~d~~~~~~~~~~~~~~~---------v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          53 DTKVAFIHGTR---------EGDFLGIYDYRTGKAEKFEENLGN---------VFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             SSEEEEEEEET---------TEEEEEEEETTTCCEEECCCCCCS---------EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEEcC---------CCCEEEEEECCCCcEEEeeCCCce---------EEeeeecccccccceeccccccccccc
Confidence            56666555431         123588999988877766542222         222223  6788888888889999999


Q ss_pred             CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCC----CCCceeEEEeecCccc
Q 016239          243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAP----RGPSFNLWKVDELSME  295 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~----~~~~~~v~~~d~~~~~  295 (392)
                      .+.+...+........ .......+|+.+++......    ......++.+|..+.+
T Consensus       115 ~~~~~~~~~~~~~~~~-~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3         115 ETGKPTVIERSREAMI-TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             TTCCEEEEEECSSSCC-CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             cccceeeeeecccccc-cchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence            8877655533332221 12223446776665543322    1123344555776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.59  E-value=3  Score=36.35  Aligned_cols=56  Identities=7%  Similarity=-0.100  Sum_probs=35.4

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE------CC-EEEEEeecccEEEEEECCCCceeec
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF------RG-RFYVFGIYSFSVSSFDLKKHVWSEV  250 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~------~g-~ly~~gg~~~~i~~yd~~~~~W~~i  250 (392)
                      .+.++|..+++-+.+..++.. ..      +.....      +| .||+.+...+.+..+|..+.+-...
T Consensus        84 ~v~~~d~~t~~~~~~~~i~~~-~~------~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2          84 KVNMIDLWMKEPTTVAEIKIG-SE------ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             EEEEEETTSSSCCEEEEEECC-SE------EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             CEEEEEeeCCCceEEEEEecC-CC------CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            688999887765544433332 11      222222      45 4778887788999999988865543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=88.58  E-value=4.1  Score=33.73  Aligned_cols=59  Identities=12%  Similarity=0.024  Sum_probs=35.2

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-cccCCCCcccceeEEee-CC-eEEEEEeecCCCCCceeEEEeec
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-VQTLRPPGVMFSFLIAS-PN-MLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-i~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      +|.||+..-..+.|.+||++..+... +.. +....  ..++.- ++ .|||....      ...||+++.
T Consensus       236 ~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~~~--t~~afg~d~~~lyVt~~~------~g~i~~~~~  297 (314)
T d1pjxa_         236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKP--SNLHFKPQTKTIFVTEHE------NNAVWKFEW  297 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCE--EEEEECTTSSEEEEEETT------TTEEEEEEC
T ss_pred             CCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-CCCCE--EEEEEeCCCCEEEEEECC------CCcEEEEEC
Confidence            68999987666899999998776433 332 21111  112222 33 58886531      357777764

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=4.1  Score=31.21  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=37.3

Q ss_pred             CCEEEEEeecccEEEEEECCCCceee-----ccc-CCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSE-----VQT-LRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~-----i~~-~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      +|++|+|-|.  ..+.||..+++-..     |.. .+..+....++...++++|++-|        .+.|+||..+.
T Consensus       109 ~g~~Y~FkG~--~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~idaAf~~~~~~Yffkg--------~~y~r~~~~~~  175 (195)
T d1itva_         109 RGKMLLFSGR--RLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREKAYFCQD--------RFYWRVSSRSE  175 (195)
T ss_dssp             TTEEEEEETT--EEEEEETTTTEECGGGCEEHHHHSTTSCSSCSEEEEETTEEEEEET--------TEEEEEECCTT
T ss_pred             CCeEEEEecc--EEEEEeCCcccccCCCccchhhhcCCCCCCCcEEEEeCCcEEEEEC--------CEEEEEcCCce
Confidence            6899999773  78999998764332     111 11111223334556899998864        35677876543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.16  E-value=5.3  Score=31.99  Aligned_cols=27  Identities=15%  Similarity=0.079  Sum_probs=20.1

Q ss_pred             eEEECCEEEEEeecccEEEEEECCCCc
Q 016239          220 SALFRGRFYVFGIYSFSVSSFDLKKHV  246 (392)
Q Consensus       220 ~~~~~g~ly~~gg~~~~i~~yd~~~~~  246 (392)
                      ....++...+.++..+.|..||..+.+
T Consensus       155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         155 TMDTNSSRLIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             EEEECSSEEEEEESTTEEEEEESSCCT
T ss_pred             eeeccCCceeeecCCCcEEEEecccCc
Confidence            345567777888888899999986553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.82  E-value=2.8  Score=38.34  Aligned_cols=124  Identities=11%  Similarity=0.088  Sum_probs=68.4

Q ss_pred             eeeEEECCEEEEEeecccEEEEEECCCC--ceeecccCCC-------CcccceeEEeeCCeEEEEEeecCCCCCceeEEE
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDLKKH--VWSEVQTLRP-------PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWK  288 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~~~~--~W~~i~~~~~-------~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~  288 (392)
                      .+.++.+|+||+... .+.|+++|.++.  .|+.-+..+.       .......++..++++|+...       ...++.
T Consensus        71 stPiv~~g~vyv~t~-~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~g~l~a  142 (573)
T d1kb0a2          71 ATPVVVDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIA  142 (573)
T ss_dssp             CCCEEETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred             ECCEEECCEEEEECC-CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------ccceee
Confidence            456788999998764 467999999877  5764322111       11222345667888887542       346777


Q ss_pred             eecCccc--eEeccc-CCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceeeee
Q 016239          289 VDELSME--FSEIAI-MPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSWRR  362 (392)
Q Consensus       289 ~d~~~~~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W~~  362 (392)
                      +|..+.+  |+.-.. -+...   +        ....+-++.++++++-+........-.+.-+|..|++  ..|+.
T Consensus       143 lda~tG~~~W~~~~~~~~~~~---~--------~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~--~~W~~  206 (573)
T d1kb0a2         143 LDAATGKEVWHQNTFEGQKGS---L--------TITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE--RKWRW  206 (573)
T ss_dssp             EETTTCCEEEEEETTTTCCSS---C--------BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC--EEEEE
T ss_pred             eccccccceecccCccCCcce---E--------EeecceEEEeccEEEeeccccccccceEEEEecCCcc--ceeee
Confidence            8766554  764321 11110   0        1123446778888774332222222223334888877  55764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.81  E-value=6.9  Score=31.87  Aligned_cols=106  Identities=8%  Similarity=-0.063  Sum_probs=63.4

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      ++.||.+--.           ...+..+|+++++-+... +|..  .+     ..+..-+|.+++...  +.+..||+.+
T Consensus        29 ~~~l~wvDi~-----------~~~I~r~d~~~g~~~~~~-~~~~--~~-----~i~~~~dg~l~va~~--~gl~~~d~~t   87 (295)
T d2ghsa1          29 SGTAWWFNIL-----------ERELHELHLASGRKTVHA-LPFM--GS-----ALAKISDSKQLIASD--DGLFLRDTAT   87 (295)
T ss_dssp             TTEEEEEEGG-----------GTEEEEEETTTTEEEEEE-CSSC--EE-----EEEEEETTEEEEEET--TEEEEEETTT
T ss_pred             CCEEEEEECC-----------CCEEEEEECCCCeEEEEE-CCCC--cE-----EEEEecCCCEEEEEe--CccEEeeccc
Confidence            6778876321           226899999888655432 2332  11     222334777776543  5799999999


Q ss_pred             CceeecccCCC---CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeec
Q 016239          245 HVWSEVQTLRP---PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       245 ~~W~~i~~~~~---~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      ++++.+.....   ..+.....+.-+|+|++.............+|+++.
T Consensus        88 g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~  137 (295)
T d2ghsa1          88 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK  137 (295)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred             ceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence            99888755433   222334445568999887654443333556676643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.96  E-value=4.4  Score=36.76  Aligned_cols=120  Identities=17%  Similarity=0.101  Sum_probs=64.2

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCC-C-CCCCccceeeEEECCEEEEEeecccEEEEE
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADF-R-SGYSSQYLSSALFRGRFYVFGIYSFSVSSF  240 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~-~-~~~~~~~~~~~~~~g~ly~~gg~~~~i~~y  240 (392)
                      +++||+.....            .+...|.++++  |+.-+..+... + ..........+..++++|+... .+.|+++
T Consensus        66 ~g~vyv~t~~~------------~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~l~Al  132 (560)
T d1kv9a2          66 DGVIYTSMSWS------------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-DGRLIAL  132 (560)
T ss_dssp             TTEEEEEEGGG------------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-TSEEEEE
T ss_pred             CCEEEEECCCC------------eEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-CCEEEEE
Confidence            89999875431            46777777664  76432211100 0 0000012456677888877643 4689999


Q ss_pred             ECCCC--ceeecccCCC-CcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCccc--eEe
Q 016239          241 DLKKH--VWSEVQTLRP-PGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSME--FSE  298 (392)
Q Consensus       241 d~~~~--~W~~i~~~~~-~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~--W~~  298 (392)
                      |..+.  .|+.-...+. .......-++.++.+++-... ......-.|..||..+.+  |+-
T Consensus       133 da~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~-~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGG-AEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             ETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCCCcEEeccCccCcccceeeeeeeeeecCcccccccc-eeccccceEEEEECCCceEEeee
Confidence            98876  5655432222 122222335667777764322 222223457777876654  664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=84.75  E-value=4.1  Score=33.45  Aligned_cols=95  Identities=8%  Similarity=-0.054  Sum_probs=53.6

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecc--cEEEEEECCCCceeecccCCCCcccceeE
Q 016239          188 AVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYS--FSVSSFDLKKHVWSEVQTLRPPGVMFSFL  263 (392)
Q Consensus       188 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~--~~i~~yd~~~~~W~~i~~~~~~~~~~~~~  263 (392)
                      ++.+||..++....+..   .-+       ...+.+  +|+..++.+..  ..|..+|..+++-..+.....  ......
T Consensus        25 ~v~v~d~~~~~~~~~~~---~~~-------v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~--~v~~~~   92 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE---PLR-------IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG--NVFAMG   92 (360)
T ss_dssp             EEEEECTTSSBEEECSC---CSC-------EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC--SEEEEE
T ss_pred             eEEEEECCCCcEEEccC---CCC-------EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc--eEEeee
Confidence            68999998888777632   112       223333  67766554433  368899999887666533221  112222


Q ss_pred             EeeCCeEEEEEeecCCCCCceeEEEeecCccceEecc
Q 016239          264 IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSEIA  300 (392)
Q Consensus       264 ~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~~~  300 (392)
                      ..-+|+.++.++...    .+.+|  +..+.....+.
T Consensus        93 ~spdg~~l~~~~~~~----~~~~~--~~~~~~~~~~~  123 (360)
T d1k32a3          93 VDRNGKFAVVANDRF----EIMTV--DLETGKPTVIE  123 (360)
T ss_dssp             ECTTSSEEEEEETTS----EEEEE--ETTTCCEEEEE
T ss_pred             ecccccccceecccc----ccccc--cccccceeeee
Confidence            344777777665432    34444  66665544443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=9.3  Score=31.19  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=54.9

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEE--CCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALF--RGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++..++.|+.+           ..+.+||....+.+....+... ...     .....+  ++.+.+.++..+.+..+|.
T Consensus       108 dg~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~-~~~-----v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_         108 DGCTLIVGGEA-----------STLSIWDLAAPTPRIKAELTSS-APA-----CYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TSSEEEEEESS-----------SEEEEEECCCC--EEEEEEECS-SSC-----EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCEEEEeecc-----------cccccccccccccccccccccc-ccc-----ccccccccccccccccccccccccccc
Confidence            55566666642           2688888876665544332221 111     122222  5667777887789999999


Q ss_pred             CCCceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeecCcc
Q 016239          243 KKHVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDELSM  294 (392)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~  294 (392)
                      .+++-........... .......++..++.|+.++    .+.+|  |..+.
T Consensus       171 ~~~~~~~~~~~~~~~v-~~l~~s~~~~~~~~~~~d~----~v~i~--d~~~~  215 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGA-SCIDISNDGTKLWTGGLDN----TVRSW--DLREG  215 (337)
T ss_dssp             TTTEEEEEECCCSSCE-EEEEECTTSSEEEEEETTS----EEEEE--ETTTT
T ss_pred             cccccccccccccccc-ccccccccccccccccccc----ccccc--ccccc
Confidence            8775433322211111 1111233666666665432    56666  65443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.04  E-value=4.1  Score=33.74  Aligned_cols=71  Identities=6%  Similarity=0.112  Sum_probs=43.4

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeE-EeeCCeEEEEEeecCCCCCceeEEEeecCccceEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFL-IASPNMLVLAGMCNAPRGPSFNLWKVDELSMEFSE  298 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~~~~~~~v~~~d~~~~~W~~  298 (392)
                      +|.||+..-..+.|+++|+.++...........  ....+ +..+|+||+.....  ......+..++..+.....
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~dG~l~va~~~~--~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA--NPAAIKIHKDGRLFVCYLGD--FKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSS--SEEEEEECTTSCEEEEECTT--SSSCCEEEEECTTSCSCEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC--CeeEEEECCCCCEEEEecCC--CccceeEEEEcCCCceeee
Confidence            578999977778999999988765544222211  11223 33488999875321  1124567777777766544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.86  E-value=5.3  Score=36.53  Aligned_cols=126  Identities=10%  Similarity=0.096  Sum_probs=64.9

Q ss_pred             eeeEEECCEEEEEeecccEEEEEEC-CC--CceeecccCCC-------CcccceeEEeeCCe-----EEEEEeecCCCCC
Q 016239          218 LSSALFRGRFYVFGIYSFSVSSFDL-KK--HVWSEVQTLRP-------PGVMFSFLIASPNM-----LVLAGMCNAPRGP  282 (392)
Q Consensus       218 ~~~~~~~g~ly~~gg~~~~i~~yd~-~~--~~W~~i~~~~~-------~~~~~~~~~~~~g~-----l~v~gg~~~~~~~  282 (392)
                      .+.++++|+||+.+...+.+++.|. ++  ..|+.-+....       .....-.++...+.     +++++..      
T Consensus        56 ~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~------  129 (596)
T d1w6sa_          56 GAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------  129 (596)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------
T ss_pred             eCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeC------
Confidence            5678999999999876678888885 33  47875432221       10111112333222     2333321      


Q ss_pred             ceeEEEeecCccc--eEecccCCHHHHHhhcCCcccCccceeEEEEeCCEEEEEeccccCCCCeEEEEeecCCCccceee
Q 016239          283 SFNLWKVDELSME--FSEIAIMPHDFLYSLVDTEEDDKFASLKCVGLGNLIYVFNEEYHKKYPACVCEIGTESDKCRCSW  360 (392)
Q Consensus       283 ~~~v~~~d~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~gg~~~~~~~~~~~~~d~~~~~~~~~W  360 (392)
                      ...++.+|..+.+  |+.-..-+....           ....+-.+.+++|||-........+=.+.-+|..|++  ..|
T Consensus       130 dg~l~Alda~tG~~~w~~~~~d~~~~~-----------~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~--~~W  196 (596)
T d1w6sa_         130 DGNVAALNAETGETVWKVENSDIKVGS-----------TLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE--QVW  196 (596)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTC-----------BCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC--EEE
T ss_pred             CCCeEeeccccCceecccccccccccc-----------ccccCCcEECCeEEEeeccccccccCceEEEECCCCc--EEE
Confidence            3466777766543  654211111100           1233456789998884332222222223334888877  668


Q ss_pred             ee
Q 016239          361 RR  362 (392)
Q Consensus       361 ~~  362 (392)
                      +.
T Consensus       197 ~~  198 (596)
T d1w6sa_         197 RA  198 (596)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.59  E-value=10  Score=30.38  Aligned_cols=103  Identities=13%  Similarity=0.029  Sum_probs=50.6

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCCeecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEECCC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKK  244 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~~~  244 (392)
                      +++.++.|+.+           ..+.+||..+..-...... .. ...     ......++.+.+. |.++.|..||+++
T Consensus       252 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~l~~-g~d~~i~vwd~~t  312 (355)
T d1nexb2         252 SDKFLVSAAAD-----------GSIRGWDANDYSRKFSYHH-TN-LSA-----ITTFYVSDNILVS-GSENQFNIYNLRS  312 (355)
T ss_dssp             CSSEEEEECTT-----------SEEEEEETTTCCEEEEEEC-TT-CCC-----CCEEEECSSEEEE-EETTEEEEEETTT
T ss_pred             ccceeeeeecc-----------cccccccccccceeccccc-CC-ceE-----EEEEcCCCCEEEE-EeCCEEEEEECCC
Confidence            45566666541           2578888766542211111 11 111     2233456766554 4578999999988


Q ss_pred             CceeecccCCCCcccceeEEeeCCeEEEEEeecCCCCCceeEEEeec
Q 016239          245 HVWSEVQTLRPPGVMFSFLIASPNMLVLAGMCNAPRGPSFNLWKVDE  291 (392)
Q Consensus       245 ~~W~~i~~~~~~~~~~~~~~~~~g~l~v~gg~~~~~~~~~~v~~~d~  291 (392)
                      ++.-... ..........+...++.+++.++.++    ...||.+|.
T Consensus       313 g~~~~~~-~~~~~~~V~~v~~~~~~~~~~~s~dg----~~~l~~~df  354 (355)
T d1nexb2         313 GKLVHAN-ILKDADQIWSVNFKGKTLVAAVEKDG----QSFLEILDF  354 (355)
T ss_dssp             CCBCCSC-TTTTCSEEEEEEEETTEEEEEEESSS----CEEEEEEEC
T ss_pred             CCEEEEE-ecCCCCCEEEEEEcCCeEEEEEECCC----cEEEEEEeC
Confidence            7642211 11111111223334555555554332    456777664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.15  E-value=13  Score=30.59  Aligned_cols=62  Identities=18%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCC-C--Ccc--cceeEE-eeCCeEEEEEeecCCCCCceeEEEe
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLR-P--PGV--MFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKV  289 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~-~--~~~--~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~  289 (392)
                      ++.+++.|+.++.|..||..+.......... .  ...  ....+. ..++++++.|+.++    .+.+|.+
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~----~i~iwd~  283 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SVKLWNL  283 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EEEEEEC
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC----cEEEEec
Confidence            5677888888889999999877654321111 1  111  111222 23677777765433    6777743

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.27  E-value=12  Score=29.87  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             CCEEEEEeecccEEEEEECCCCceeecccCCCCcccceeEE-eeCCeEEEEEeecCCCCCceeEEEeecCc
Q 016239          224 RGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFLI-ASPNMLVLAGMCNAPRGPSFNLWKVDELS  293 (392)
Q Consensus       224 ~g~ly~~gg~~~~i~~yd~~~~~W~~i~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~~~~~~~v~~~d~~~  293 (392)
                      ++.+++.|+..+.|..||.....................+. ..++++++.|+.++    .+.+|  |..+
T Consensus       237 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg----~i~iw--d~~~  301 (340)
T d1tbga_         237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF----NCNVW--DALK  301 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS----CEEEE--ETTT
T ss_pred             CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCC----EEEEE--ECCC
Confidence            57788888888899999998776543322222111122222 33677777776443    57777  6544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.21  E-value=20  Score=32.21  Aligned_cols=73  Identities=16%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             CCeEEEEeceeecCcccccccceEEEEEeCCCCC--eecCCCCCCCCCCCCCccceeeEEECCEEEEEeecccEEEEEEC
Q 016239          165 LPKFIVVGGVRFIGGLVDIEDRLAVEIYDPHSDS--WELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDL  242 (392)
Q Consensus       165 ~~~iyv~gG~~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~i~~yd~  242 (392)
                      ++.||+....            ..+...|.++++  |+.-...+...+........+.+..++++|+. ...+.++++|.
T Consensus        68 ~g~vy~~t~~------------~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~-t~~~~l~alda  134 (582)
T d1flga_          68 DGVIYVTASY------------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFG-TLDASVVALNK  134 (582)
T ss_dssp             TTEEEEEETT------------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEE-ETTTEEEEEES
T ss_pred             CCEEEEeCCC------------CeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEe-cCCCeEEEecc
Confidence            8899987543            157777777654  76433322211111001113456778888874 44568999999


Q ss_pred             CCC--ceeec
Q 016239          243 KKH--VWSEV  250 (392)
Q Consensus       243 ~~~--~W~~i  250 (392)
                      ++.  .|+..
T Consensus       135 ~tG~~~W~~~  144 (582)
T d1flga_         135 NTGKVVWKKK  144 (582)
T ss_dssp             SSCCEEEEEE
T ss_pred             cccceeeeec
Confidence            887  67553