Citrus Sinensis ID: 016264

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--

MSSGDRREAAPAAGEVKNGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHccccccccccHHHHHcccccHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccHHcccccccccccccccEEEEEEccccccccccccccccEEEEEEcccccccccEEEEcccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc

cccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccHHHccccccHHHHHHHHHHccHHHHcHcHHHHHHHHHHHHHHHcccHHHHcHHHcccEEEHHccccccHHHHcccHHHHcccHHHHHHccccHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccEEHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHcEEEEEEcccccccccccccccEEEEEEEEccccccccEEEccEEEccEEcccccccccEEEEccccEEEEcccccccccccccccHHHEEEEEEHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHcccccc

mssgdrreaapaagevkngvvsgdlsqrqiqsepasgvvapsqnqrlrlnpskdhkpesyddmqldfspsifsslerylpppmlglnrEEKVKFMREILMKYlpqgertrrhRDYRQKIITNYQPLHRELYNLhignffvppfvkaIQDNTEESFRSiisepspgvftfemLQPRFCELLLAEVENFEKWVNEAKFrimrpntmnkygavldDFGLETMLDKLMETYIRPLSKVFFAEvggstldshhgfvveygkdrdvdlgfhvddseVTLNVClgkqftggelffrgtrcekhvntgsqteeifdyshvpgravlhrgrhrhgarattsgHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT

mssgdrreaapaagevkngvvsgDLSQRQIQSepasgvvapsqnqrlrlnpskdhkpesYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMkylpqgertrrhrdyrQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAkfrimrpntmnKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRhgarattsghrvnlLLWCRSSVFREMKRYQKDFSSWCGECFREKKERqrlsiaatksellkqegestt

MSSGDRREAAPAAGEVKNGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPgravlhrgrhrhgaraTTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT

**************************************************************************LERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFR**************************

*************************************************************DMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWV**************KYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKH*********IFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGEC*********************Q******

**************EVKNGVVSGDL****************SQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLH************SGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSE**********

*******************************************NQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQE*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		392	2.2.26 [Sep-21-2011]
Q3ED68		397	Uncharacterized PKHD-type	no	no	0.882	0.871	0.612	1e-133
Q28C22		349	2-oxoglutarate and iron-d	yes	no	0.617	0.693	0.378	2e-39
A3KGZ2		345	2-oxoglutarate and iron-d	yes	no	0.612	0.695	0.367	2e-39
Q6N063		350	2-oxoglutarate and iron-d	no	no	0.584	0.654	0.339	8e-35
Q9CQ04		349	2-oxoglutarate and iron-d	yes	no	0.558	0.627	0.341	5e-34
Q20679		730	Procollagen-lysine,2-oxog	yes	no	0.418	0.224	0.267	3e-08
O60568		738	Procollagen-lysine,2-oxog	no	no	0.413	0.219	0.284	7e-07
Q5R6K5		738	Procollagen-lysine,2-oxog	no	no	0.413	0.219	0.284	8e-07
Q9R0E1		741	Procollagen-lysine,2-oxog	no	no	0.410	0.217	0.280	1e-06
Q5U367		741	Procollagen-lysine,2-oxog	no	no	0.410	0.217	0.280	2e-06

>sp\|Q3ED68\|Y1295_ARATH Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2	Back alignment and function desciption

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 277/348 (79%), Gaps = 2/348 (0%)

Query: 46  RLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQ 105
           +LR  P+++H+PE+Y+D+ LD+SPS+F+SLERYLP  +L   R +K  FMR++L++Y P 
Sbjct: 39  KLRRTPNEEHEPENYEDLPLDYSPSLFTSLERYLPEQLLNSTRIDKASFMRDLLLRYSPD 98

Query: 106 GERTR--RHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPS 163
            ER R  RH++YR KI+++YQ LH E+Y L   +FF P F+ A    +E +FRS + E  
Sbjct: 99  TERVRVLRHKEYRDKIMSSYQRLHGEIYTLDPSSFFAPSFLGAFSRKSEPNFRSSMVESY 158

Query: 164 PGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKL 223
           PG+FTFEM +P+FCE+LLAEVE+ EKWV +++  IMRPNTMN +G VLDDFG ++ML KL
Sbjct: 159 PGIFTFEMFKPQFCEMLLAEVEHMEKWVYDSRSTIMRPNTMNNFGVVLDDFGFDSMLQKL 218

Query: 224 METYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTG 283
           ++ +I P+++V F EV G++LDSHHG++VEYGKDRDVDLGFHVDDSEV+LNVCLGKQF+G
Sbjct: 219 VDDFISPIAQVLFPEVCGTSLDSHHGYIVEYGKDRDVDLGFHVDDSEVSLNVCLGKQFSG 278

Query: 284 GELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCR 343
           GEL+FRG RC+KHVN+ S  +E++DYSHVPG A+LHRGRHRHGARATTSGHR NL+LWCR
Sbjct: 279 GELYFRGVRCDKHVNSDSTEKEVYDYSHVPGHAILHRGRHRHGARATTSGHRANLILWCR 338

Query: 344 SSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGEST 391
           SS FREMK YQ+DFS WCG C  +K+ RQR SI ATK  L ++  E T
Sbjct: 339 SSTFREMKNYQRDFSGWCGGCKLDKQRRQRDSINATKEILARKAAEKT 386

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q28C22\|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Xenopus tropicalis GN=ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|A3KGZ2\|OGFD2_DANRE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Danio rerio GN=ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|Q6N063\|OGFD2_HUMAN 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2	Back alignment and function description

>sp\|Q9CQ04\|OGFD2_MOUSE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Mus musculus GN=Ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|Q20679\|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-dioxygenase OS=Caenorhabditis elegans GN=let-268 PE=1 SV=1	Back alignment and function description

>sp\|O60568\|PLOD3_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1	Back alignment and function description

>sp\|Q5R6K5\|PLOD3_PONAB Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Pongo abelii GN=PLOD3 PE=2 SV=1	Back alignment and function description

>sp\|Q9R0E1\|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Mus musculus GN=Plod3 PE=1 SV=1	Back alignment and function description

>sp\|Q5U367\|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus norvegicus GN=Plod3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		392
359490986		395	PREDICTED: uncharacterized PKHD-type hyd	0.964	0.956	0.778	0.0
255567788		411	oxidoreductase, putative [Ricinus commun	0.992	0.946	0.754	0.0
224135445		391	predicted protein [Populus trichocarpa]	0.946	0.948	0.783	1e-174
356520629		370	PREDICTED: uncharacterized PKHD-type hyd	0.920	0.975	0.778	1e-170
356531172		379	PREDICTED: uncharacterized PKHD-type hyd	0.885	0.915	0.802	1e-170
357500135		371	PKHD-type hydroxylase, putative [Medicag	0.910	0.962	0.761	1e-165
449458771		384	PREDICTED: uncharacterized PKHD-type hyd	0.908	0.927	0.751	1e-164
217075821		371	unknown [Medicago truncatula]	0.910	0.962	0.758	1e-163
255570701		379	oxidoreductase, putative [Ricinus commun	0.905	0.936	0.748	1e-161
297734260		312	unnamed protein product [Vitis vinifera]	0.790	0.993	0.849	1e-160

>gi\|359490986\|ref\|XP_002277437.2\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/402 (77%), Positives = 350/402 (87%), Gaps = 24/402 (5%)

Query: 3   SGDRREAAP-----AAGEVK-----NGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPS 52
           S DRRE  P      +G +      NGVVSGD S+  + S            QRLRLNP+
Sbjct: 6   SADRREDPPPPQNNGSGAIASIGGGNGVVSGDSSRPFVPS------------QRLRLNPN 53

Query: 53  KDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTR-- 110
           KDHKP++YDD+QLDF+PSIFSSLERYLPP ML ++RE KV+FMREIL++YLPQGE+TR  
Sbjct: 54  KDHKPDNYDDLQLDFNPSIFSSLERYLPPSMLSVSREAKVQFMREILLRYLPQGEQTRAQ 113

Query: 111 RHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFE 170
           RHR+YRQKII+NYQPLHRELY +H   FF P F+KAI DNTEESFRSI+SEPSPGV+TFE
Sbjct: 114 RHREYRQKIISNYQPLHRELYAMHPATFFAPQFLKAINDNTEESFRSIMSEPSPGVYTFE 173

Query: 171 MLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRP 230
           M QP FCELLL EVENFE WVNEAKFRIMRPNTMNK+GAVLDDFGLETMLDKLME +IRP
Sbjct: 174 MFQPHFCELLLHEVENFENWVNEAKFRIMRPNTMNKFGAVLDDFGLETMLDKLMEGFIRP 233

Query: 231 LSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRG 290
           +SKVFF+EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGK+F+GGELFFRG
Sbjct: 234 ISKVFFSEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKEFSGGELFFRG 293

Query: 291 TRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREM 350
           TRC+KHVNTGSQ+EEIFDYSHVPG+AVLHRGRHRHGARATT+GHR+NLLLWCRSS+FREM
Sbjct: 294 TRCDKHVNTGSQSEEIFDYSHVPGKAVLHRGRHRHGARATTAGHRINLLLWCRSSIFREM 353

Query: 351 KRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGESTT 392
           K+YQKDFSSWCGEC REK ERQR+SIAATK ELL++EGESTT
Sbjct: 354 KKYQKDFSSWCGECNREKNERQRMSIAATKLELLRREGESTT 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255567788\|ref\|XP_002524872.1\| oxidoreductase, putative [Ricinus communis] gi\|223535835\|gb\|EEF37496.1\| oxidoreductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224135445\|ref\|XP_002322075.1\| predicted protein [Populus trichocarpa] gi\|222869071\|gb\|EEF06202.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356520629\|ref\|XP_003528963.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Glycine max]	Back alignment and taxonomy information

>gi\|356531172\|ref\|XP_003534152.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Glycine max]	Back alignment and taxonomy information

>gi\|357500135\|ref\|XP_003620356.1\| PKHD-type hydroxylase, putative [Medicago truncatula] gi\|355495371\|gb\|AES76574.1\| PKHD-type hydroxylase, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449458771\|ref\|XP_004147120.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus] gi\|449503401\|ref\|XP_004161984.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|217075821\|gb\|ACJ86270.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255570701\|ref\|XP_002526305.1\| oxidoreductase, putative [Ricinus communis] gi\|223534386\|gb\|EEF36094.1\| oxidoreductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297734260\|emb\|CBI15507.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		392
TAIR\|locus:2092727		394	AT3G18210 [Arabidopsis thalian	0.936	0.931	0.656	4.2e-134
TAIR\|locus:2017774		397	AT1G22950 [Arabidopsis thalian	0.943	0.931	0.548	4.5e-114
TAIR\|locus:2158327		410	AT5G43660 [Arabidopsis thalian	0.869	0.831	0.495	1.3e-91
TAIR\|locus:2008189		291	AT1G48700 [Arabidopsis thalian	0.721	0.972	0.519	6.6e-81
DICTYBASE\|DDB_G0270778		417	DDB_G0270778 "putative prolyl	0.594	0.558	0.305	2e-33
ZFIN\|ZDB-GENE-061215-54		345	zgc:158437 "zgc:158437" [Danio	0.635	0.721	0.350	2e-33
UNIPROTKB\|F1NPS1		350	F1NPS1 "Uncharacterized protei	0.640	0.717	0.323	1.4e-30
MGI\|MGI:1913877		349	Ogfod2 "2-oxoglutarate and iro	0.612	0.687	0.310	9.4e-27
UNIPROTKB\|E1BBA9		350	OGFOD2 "Uncharacterized protei	0.630	0.705	0.305	1.9e-26
UNIPROTKB\|E2QZH8		351	OGFOD2 "Uncharacterized protei	0.630	0.703	0.309	1.9e-26

TAIR\|locus:2092727 AT3G18210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
 Identities = 243/370 (65%), Positives = 293/370 (79%)

Query:    18 NGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLER 77
             NG ++G  S     +   +     S  QRLRLNP+ +H+P+SY+D+QLDF  S++SSLE+
Sbjct:    20 NGTIAGQNSHSAAPTTLRATSTMVSC-QRLRLNPNNEHRPDSYEDLQLDFPNSVYSSLEK 78

Query:    78 YLPPPMLGLNREEKVKFMREILMKYLPQGERTR--RHRDYRQKIITNYQPLHRELYNLHI 135
             YLPP ML  NR+EK+KFM +I++++LP GER+R  RH DYR KI TNYQPLH+ELY L  
Sbjct:    79 YLPPNMLVSNRDEKIKFMTDIMLRHLPHGERSRAQRHSDYRLKITTNYQPLHKELYTLVP 138

Query:   136 GNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAK 195
                FVP F+KAI +NTEESFR+IISEPSPGVF F+MLQP FCE++LAE++NFE+WV E K
Sbjct:   139 TVCFVPAFLKAINENTEESFRNIISEPSPGVFVFDMLQPSFCEMMLAEIDNFERWVGETK 198

Query:   196 FRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYG 255
             FRIMRPNTMNKYGAVLDDFGL+TMLDKLME +IRP+SKVFF++VGG+TLDSHHGFVVEYG
Sbjct:   199 FRIMRPNTMNKYGAVLDDFGLDTMLDKLMEGFIRPISKVFFSDVGGATLDSHHGFVVEYG 258

Query:   256 KDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPXX 315
             KDRDVDLGFHVDDSEVTLNVCLG QF GGELFFRGTRCEKHVNT ++ +E +DY H+P  
Sbjct:   259 KDRDVDLGFHVDDSEVTLNVCLGNQFVGGELFFRGTRCEKHVNTATKADETYDYCHIPGQ 318

Query:   316 XXXXXXXXXXXXXXTTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLS 375
                           TT GHRVN+LLWCRSSVFRE+K + KDFSSWCGECF EK++ +  S
Sbjct:   319 AVLHRGRHRHGARATTCGHRVNMLLWCRSSVFRELKTHHKDFSSWCGECFCEKRDEKVRS 378

Query:   376 IAATKSELLK 385
             I A + +L K
Sbjct:   379 IDALRKKLFK 388

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR\|locus:2017774 AT1G22950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158327 AT5G43660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008189 AT1G48700 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0270778 DDB_G0270778 "putative prolyl 4-hydroxylase alpha subunit" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061215-54 zgc:158437 "zgc:158437" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NPS1 F1NPS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1913877 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BBA9 OGFOD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZH8 OGFOD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		392
smart00702		165	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun	7e-26
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	3e-09

>gnl\|CDD\|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

 Score =  102 bits (255), Expect = 7e-26
 Identities = 48/181 (26%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 173 QPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDK--LMETYIRP 230
            P  C+ LL E E    W  E    I  PN  ++Y       G    L +  L+   IR 
Sbjct: 1   SPAECQKLLEEAEPLG-WRGEVTRGIGNPNETSQY---RQSNGTWLELLERDLVIERIRQ 56

Query: 231 LSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVD-----DSEVTLNVCLGKQFTGGE 285
               F   + G  L +    V  YG       G HVD     D   T  + L     GGE
Sbjct: 57  RLADFLGLLAGLPLSAEDAQVARYGPG--GHYGPHVDNFLYGDRIATFILYLNDVEEGGE 114

Query: 286 LFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLH---RGRHRHGARATTSGHRVNLLLWC 342
           L F G R    V    + ++        G  +      GR  HG    T G R  +  W 
Sbjct: 115 LVFPGLRL--MVVATVKPKK--------GDLLFFPSGHGRSLHGVCPVTRGSRWAITGWI 164

Query: 343 R 343
           R
Sbjct: 165 R 165

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		392
KOG1971		415	consensus Lysyl hydroxylase [Posttranslational mod	100.0
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	99.83
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	99.8
PLN00052		310	prolyl 4-hydroxylase; Provisional	99.52
PHA02813		354	hypothetical protein; Provisional	99.31
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	99.11
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	99.0
KOG1971		415	consensus Lysyl hydroxylase [Posttranslational mod	98.97
PHA02869		418	C4L/C10L-like gene family protein; Provisional	98.96
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	98.37
KOG1591		289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	98.12
PF05721		211	PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro:	97.17
PF12851		171	Tet_JBP: Oxygenase domain of the 2OGFeDO superfami	97.13
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	97.13
TIGR02408		277	ectoine_ThpD ectoine hydroxylase. Both ectoine and	96.95
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	96.69
PF13661		70	2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily	96.26
TIGR02466		201	conserved hypothetical protein. This family consis	96.0
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	95.76
PF13759		101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	95.53
COG3826		236	Uncharacterized protein conserved in bacteria [Fun	94.69
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	94.41
PF03336		339	Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR	92.57
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	88.35
PLN02276		361	gibberellin 20-oxidase	88.21
PLN02904		357	oxidoreductase	87.67
PLN02365		300	2-oxoglutarate-dependent dioxygenase	86.7
PLN02947		374	oxidoreductase	86.54
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	85.4
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	85.39
PLN02156		335	gibberellin 2-beta-dioxygenase	85.31
KOG3710		280	consensus EGL-Nine (EGLN) protein [Signal transduc	84.72
COG3751		252	EGL-9 Predicted proline hydroxylase [Posttranslati	84.64
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	84.64
PLN02216		357	protein SRG1	84.44
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	83.81
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	83.7
PTZ00273		320	oxidase reductase; Provisional	82.45
PLN02485		329	oxidoreductase	82.44
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	82.21
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	81.71
PLN02254		358	gibberellin 3-beta-dioxygenase	81.18
PLN02704		335	flavonol synthase	80.85
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	80.82
PF10014		195	2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018	80.64

>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.3e-63  Score=498.59  Aligned_cols=347  Identities=38%  Similarity=0.543  Sum_probs=336.2

Q ss_pred             ccccccccCCCCCCCCCCCCCccCCCChhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCchHhhH--HHHHHHhHH
Q 016264           42 SQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTR--RHRDYRQKI  119 (392)
Q Consensus        42 ~~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r~~--~~~~~r~~i  119 (392)
                      -++.++...||.+|.+++|+|++|+|+++..++||.|+||.+|++.++.|+|||.++|.+|+|..++.+  .++.||++|
T Consensus        29 ~ni~ld~~~~~fq~l~g~~~dv~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~~  108 (415)
T KOG1971|consen   29 LNITLDHRSRIFQNLNGAYEDVVLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYRELI  108 (415)
T ss_pred             hcccccCcCcccccCcCCcCCeeEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchhh
Confidence            356799999999999999999999999999999999999999999999999999999999999999988  999999999


Q ss_pred             hhcCCCCCccccccCccccCCchhHHHhhhccHhhhhccccccCCcEEEecCCCHHHHHHHHHHHHhhhhhhhccccccc
Q 016264          120 ITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIM  199 (392)
Q Consensus       120 ~~~Y~plh~dly~lnpe~~l~p~f~~ai~~~~~~~~~~i~~ep~P~Vy~fpvftpefC~~LIeE~E~fg~Ws~gs~~~i~  199 (392)
                      .++||+|+-..|.++|+.++.|+|..+...++++.|+++.+|+.|++|+||||++.||++++.++|+|+.|+.+++++|+
T Consensus       109 ~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~  188 (415)
T KOG1971|consen  109 KSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVIT  188 (415)
T ss_pred             hhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccccccccc--ChHHHHHHHHHHHhhhhhh---------------------hhcccccCCCCcccceeEEEEeC
Q 016264          200 RPNTMNKYGAVLDDF--GLETMLDKLMETYIRPLSK---------------------VFFAEVGGSTLDSHHGFVVEYGK  256 (392)
Q Consensus       200 rPn~mN~YgvvLddi--Gl~~~~~~Ll~~yl~Pl~~---------------------~LfPe~~g~~Ldsh~~FVVrY~~  256 (392)
                      |||+|++|+++++++  +|+.+..+|.++|+.||++                     .+||.+++..|++|++|++.|..
T Consensus       189 ~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~  268 (415)
T KOG1971|consen  189 RPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSE  268 (415)
T ss_pred             CChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccC
Confidence            999999999999999  9999999999999999999                     99999999999999999999965


Q ss_pred             C-CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCccCCccc-
Q 016264          257 D-RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGH-  334 (392)
Q Consensus       257 ~-~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~y~~~~G~AllHpGrh~HeglpVTsG~-  334 (392)
                      + .|+++++|+|++++|+|+||++.|+||+++|.+..|+.|.++ .+..++|+++|.+|+++||+|.|.|++.++++|+ 
T Consensus       269 ~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~~  347 (415)
T KOG1971|consen  269 DNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQP  347 (415)
T ss_pred             cCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCCC
Confidence            5 999999999999999999999999999999999999999776 6788999999999999999999999999999999 


Q ss_pred             eeeEeeechhhhHHHHHhhhhccccccccchhhHHHHHHHHHHHhHHHHhhhhcC
Q 016264          335 RVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGE  389 (392)
Q Consensus       335 RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
                      |-+++.||.++.||+|.+|+.+|+.||+.|+.+|++++.++..+||...++..+.
T Consensus       348 ~~nv~~~~~~~~c~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~  402 (415)
T KOG1971|consen  348 CPNVYWFPISSLCDELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGF  402 (415)
T ss_pred             CCceeeehhHHHHHHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999988764

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PHA02813 hypothetical protein; Provisional	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02869 C4L/C10L-like gene family protein; Provisional	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases	Back alignment and domain information

>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>TIGR02408 ectoine_ThpD ectoine hydroxylase	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>TIGR02466 conserved hypothetical protein	Back alignment and domain information

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A	Back alignment and domain information

>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]	Back alignment and domain information

>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02216 protein SRG1	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		392
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 68/219 (31%)

Query: 20  VVSGDLSQRQIQSEPASGVVA-PSQNQRLRLNPSKD---HK--------PESYDDMQLDF 67
           VV+       ++ +P    ++ PS    L++    +   H+        P+++D    D 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--SDDL 464

Query: 68  SPS-----IFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRRHRDYR---QKI 119
            P       +S    ++   +  +   E++   R +   +L          D+R   QKI
Sbjct: 465 IPPYLDQYFYS----HIGHHLKNIEHPERMTLFRMV---FL----------DFRFLEQKI 507

Query: 120 ITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCEL 179
             +    +     L+            +Q    + ++  I +  P    +E         
Sbjct: 508 RHDSTAWNASGSILNT-----------LQQ--LKFYKPYICDNDP---KYER-------- 543

Query: 180 LLAEVENF----EKWVNEAKF-RIMRPNTMNKYGAVLDD 213
           L+  + +F    E+ +  +K+  ++R   M +  A+ ++
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		392
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	99.7
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	99.69
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	99.69
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	99.2
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	98.0
2rdq_A		288	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II	97.59
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	97.56
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	97.53
2opw_A		291	Phyhd1 protein; double-stranded beta helix, oxygen	97.31
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	97.17
3gja_A		319	CYTC3; halogenase, beta barrel, biosynthetic prote	96.91
3emr_A		310	ECTD; double stranded beta helix, oxidoreductase;	96.69
3nnf_A		344	CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen	95.14
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	94.72
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	94.57
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	94.49
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	88.81
3pl0_A		254	Uncharacterized protein; quorum sensing, biofilm f	86.92
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	82.35
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	81.65
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	80.96

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

Probab=99.70  E-value=2.9e-17  Score=156.19  Aligned_cols=163  Identities=17%  Similarity=0.305  Sum_probs=110.1

Q ss_pred             CcEEEec-CCCHHHHHHHHHHHHhhhhhhhcccc-cccccCCCCcccccccccChH-HHHHHHHHHHhhhhhhhhccccc
Q 016264          164 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKF-RIMRPNTMNKYGAVLDDFGLE-TMLDKLMETYIRPLSKVFFAEVG  240 (392)
Q Consensus       164 P~Vy~fp-vftpefC~~LIeE~E~fg~Ws~gs~~-~i~rPn~mN~YgvvLddiGl~-~~~~~Ll~~yl~Pl~~~LfPe~~  240 (392)
                      +.++.+| |||+++|++||+.++.- .|..+... ...-....||..+..++. +. .+++.+.. .+..   .  |.+.
T Consensus        19 ~~i~~i~dvLs~~Ec~~li~~~e~~-~~~dg~~t~g~~~~~vr~n~~l~~d~~-~~~~l~~~i~~-~l~~---~--~~f~   90 (243)
T 3dkq_A           19 GMLIEIPNVFSKQEVSHLREQLDAR-RWIDGNQTSGAMATTRKRNQQLDKDDP-VAVALGQQIMD-RLLA---H--PQFV   90 (243)
T ss_dssp             TTBEEECCSSCHHHHHHHHHHHHTS-CCEEECCCSSBSSCCCEEEEECCTTCH-HHHHHHHHHHH-HHHT---C--HHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHHHhhC-CCccCcccCCCccccceeeeEECCCCH-HHHHHHHHHHH-HHcc---C--cchh
Confidence            5777775 99999999999999852 45432211 111123344544444443 32 33333332 2221   0  0111


Q ss_pred             CCCCc--ccceeEEEEeCCCCCCCcccccCC-----------ceeEEEeccc--cccCcceEEccccccccccCCCCccc
Q 016264          241 GSTLD--SHHGFVVEYGKDRDVDLGFHVDDS-----------EVTLNVCLGK--QFTGGELFFRGTRCEKHVNTGSQTEE  305 (392)
Q Consensus       241 g~~Ld--sh~~FVVrY~~~~d~~L~~H~D~S-----------evTLNI~Ln~--dFeGGgl~F~~~~c~~hv~~~~~~~e  305 (392)
                      ..+|.  .....+.+|.+++  .+++|+|.+           .+|+.++||+  +|+||+|.|.....            
T Consensus        91 ~~~L~~~~e~~~~~rY~~G~--~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~------------  156 (243)
T 3dkq_A           91 SAALPLQFYPPLFNRYQGGE--TFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYG------------  156 (243)
T ss_dssp             HHHCEEEEEEEEEEEECTTC--EEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTE------------
T ss_pred             hcccccccccceEEEECCCC--eeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCC------------
Confidence            11111  1234479999976  999999963           5899999998  99999999996432            


Q ss_pred             eeeecCCCceEEEecCCCCcCCccCCccceeeEeeechhhhHHH
Q 016264          306 IFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFRE  349 (392)
Q Consensus       306 ~~~y~~~~G~AllHpGrh~HeglpVTsG~RynLV~W~rss~~R~  349 (392)
                      ...++|++|.+|+|++..+|+|.|||+|+||+++.|++|. +|+
T Consensus       157 ~~~V~P~~G~~v~F~s~~lH~v~pV~~G~R~~~~~Wi~s~-vr~  199 (243)
T 3dkq_A          157 QQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQSM-VRD  199 (243)
T ss_dssp             EEEECCCTTCEEEEETTSEEEECCEEEECEEEEEEEEEES-CCC
T ss_pred             cEEEecCCCEEEEECCCCeEcCccccccCEEEEEEehhhc-cCC
Confidence            1346899999999999999999999999999999999976 444

PyMOL of 3dkq

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*	Back alignment and structure

>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}	Back alignment and structure

>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}	Back alignment and structure

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		392
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	97.74
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	96.95
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	96.8
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	96.32
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	86.08
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	84.97

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00034  Score=62.57  Aligned_cols=196  Identities=15%  Similarity=0.149  Sum_probs=96.4

Q ss_pred             cccCccccCCchhHHHhhhccHhhhhccccccCCcEEEec-CCCHHHHHHHHHHHHhhhhhh-hcccccccccC------
Q 016264          131 YNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFE-MLQPRFCELLLAEVENFEKWV-NEAKFRIMRPN------  202 (392)
Q Consensus       131 y~lnpe~~l~p~f~~ai~~~~~~~~~~i~~ep~P~Vy~fp-vftpefC~~LIeE~E~fg~Ws-~gs~~~i~rPn------  202 (392)
                      ||++ ..-|.++=.+..+++              |...++ +|+++.|++|.++++..-+.. ...........      
T Consensus         4 ~~~~-~~~Lt~eq~~~f~~~--------------Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (296)
T d2a1xa1           4 YTLD-NNVLTLEQRKFYEEN--------------GFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSE   68 (296)
T ss_dssp             SCCC-C--CCSTHHHHHHHH--------------SEEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE
T ss_pred             eccC-CCCCCHHHHHHHHHC--------------CEEEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence            4543 334555555555543              766775 999999999999998754321 10011000000      


Q ss_pred             CCCccccc--ccccChH-HHHHHHHHHHhhhhhhhhc-ccccCCCCcccceeEEEEeC--CCCCCCcccccCC-------
Q 016264          203 TMNKYGAV--LDDFGLE-TMLDKLMETYIRPLSKVFF-AEVGGSTLDSHHGFVVEYGK--DRDVDLGFHVDDS-------  269 (392)
Q Consensus       203 ~mN~Ygvv--LddiGl~-~~~~~Ll~~yl~Pl~~~Lf-Pe~~g~~Ldsh~~FVVrY~~--~~d~~L~~H~D~S-------  269 (392)
                      ..+....+  +.++... .++.-+...-|..+++.++ +++.    -.+..++++...  ++.....+|.|.+       
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~llg~~~~----~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~~~~~  144 (296)
T d2a1xa1          69 YAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIM----AMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPS  144 (296)
T ss_dssp             -----EECCEEECCTTSHHHHHHHHCHHHHHHHHHHHCSSEE----EEEEEEEEECCC--------CCBCGGGGCCEECG
T ss_pred             cCccccchhhhhhhhhchhHHhhcccHHHHHHHHHhhccccc----eecccccccccccccccccCCcccCccccccCCc
Confidence            00011111  2222222 2333222223333444444 2111    112223333311  1223467899954       


Q ss_pred             --ceeEEEeccc-cccCcceEEcccccc----cc---------------ccCCCCccceeeecCCCceEEEecCCCCcCC
Q 016264          270 --EVTLNVCLGK-QFTGGELFFRGTRCE----KH---------------VNTGSQTEEIFDYSHVPGRAVLHRGRHRHGA  327 (392)
Q Consensus       270 --evTLNI~Ln~-dFeGGgl~F~~~~c~----~h---------------v~~~~~~~e~~~y~~~~G~AllHpGrh~Heg  327 (392)
                        .+|+-|+|.+ +-+.|.+.|....-.    .|               +.........+....++|.+|+|.++.+|++
T Consensus       145 ~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~~~l~Hgs  224 (296)
T d2a1xa1         145 DLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGS  224 (296)
T ss_dssp             GGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEECBCTTCEEEECTTCCEEE
T ss_pred             cccceeeEeeeeccccccccceecccccccccccccccccCCcccccccccchhhccceEEeeecCCcEEEECCCeeecC
Confidence              2688899964 456777877532100    00               0000001122345578999999999999999


Q ss_pred             cc-CCccceeeEeeechhh
Q 016264          328 RA-TTSGHRVNLLLWCRSS  345 (392)
Q Consensus       328 lp-VTsG~RynLV~W~rss  345 (392)
                      .+ .|+..|+.+++-..++
T Consensus       225 ~~N~S~~~R~~l~~~y~~~  243 (296)
T d2a1xa1         225 GQNKTQGFRKAISCHFASA  243 (296)
T ss_dssp             CCBCSSSCEEEEEEEEEET
T ss_pred             CCCCCcCceEEEEEEEECC
Confidence            88 6678899998866544

PyMOL of d2a1xa1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure