Citrus Sinensis ID: 016266
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AA1 | 464 | UNC93-like protein 3 OS=A | no | no | 0.979 | 0.827 | 0.708 | 1e-151 | |
| Q86WB7 | 457 | Protein unc-93 homolog A | no | no | 0.877 | 0.752 | 0.309 | 2e-33 | |
| Q6DDL7 | 460 | Protein unc-93 homolog A | N/A | no | 0.859 | 0.732 | 0.297 | 1e-32 | |
| Q710D3 | 458 | Protein unc-93 homolog A | yes | no | 0.877 | 0.751 | 0.303 | 3e-31 | |
| Q93380 | 705 | Putative potassium channe | yes | no | 0.818 | 0.455 | 0.302 | 1e-29 | |
| Q9Y115 | 538 | UNC93-like protein OS=Dro | yes | no | 0.908 | 0.661 | 0.282 | 2e-29 | |
| Q5SPF7 | 465 | Protein unc-93 homolog A | yes | no | 0.882 | 0.744 | 0.286 | 7e-29 | |
| A2VE54 | 457 | Protein unc-93 homolog A | yes | no | 0.877 | 0.752 | 0.293 | 1e-27 | |
| O43934 | 449 | UNC93-like protein MFSD11 | no | no | 0.859 | 0.750 | 0.251 | 3e-16 | |
| Q8BJ51 | 449 | UNC93-like protein MFSD11 | no | no | 0.875 | 0.763 | 0.252 | 4e-16 |
| >sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/395 (70%), Positives = 319/395 (80%), Gaps = 11/395 (2%)
Query: 1 MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
MES + DEEAPL++ + +V K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1 MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58
Query: 58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
LGTISLGILY SF S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59 --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116
Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176
Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
LA+LKD K GSTSGTTLL +VFL +TLGTILM F+RK + + K + V L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236
Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296
Query: 298 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357
A+CS+ AGR T+GL SITFIVSGGA+AQ VFLW+L+ Y TSGVLGT YPLIMAA+LGI
Sbjct: 297 AVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGI 356
Query: 358 GDGVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
GDG+LNTQ+SALL +LFKHDT A Q+ VW
Sbjct: 357 GDGILNTQISALLALLFKHDTEGA----FAQLKVW 387
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 187/388 (48%), Gaps = 44/388 (11%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
R+V ++S FLL+F AYG Q+L++++ +E LG +L LY S+ + L++ L
Sbjct: 6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K +IL GY F N F SWYT++P S+ LG A+ +W + TYLT +HA
Sbjct: 66 GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGST----------------- 189
++ + G F+ +F S GNLI+ V T
Sbjct: 126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGASDCLMA 185
Query: 190 --------SGTTLLFIVFLGVITLGTILM-----CFLRKEED-KGEKETADASVNFYSYL 235
+ L LG+ T +L FL+ D + E E SV F+S L
Sbjct: 186 TTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTL 245
Query: 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 295
+S K L D R+ L+I L YSGLQQ F+ +E+T+ VT LG+ VG M + A
Sbjct: 246 LSTFK----LYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSA 301
Query: 296 FDAICSLAAGRLT--TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 353
DA+CS+ G+++ TG ++ +++ GA+ V + +L+ + + L + + +
Sbjct: 302 TDALCSVLYGKVSQYTG-RAVLYVL--GAVTHVSCMIALLL-WRPRADHLAVFF--VFSG 355
Query: 354 LLGIGDGVLNTQLSALLGILFKHDTVTA 381
L G+ D V TQ +AL G+LF+ A
Sbjct: 356 LWGVADAVWQTQNNALYGVLFEKSKEAA 383
|
Homo sapiens (taxid: 9606) |
| >sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 183/397 (46%), Gaps = 60/397 (15%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
+++ I+S FLL+F A+G Q+L++++N++ LG SL ++Y + S+ V +V++ +
Sbjct: 5 KNILIVSFGFLLLFTAFGGLQSLQSSLNSDEGLGVASLSVIYAALIVSSVFVPPIVIKKI 64
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K ++ Y + N + SWYT++P SL LGF + +W + TYLT + +A
Sbjct: 65 GCKWTIVASMCCYITYSLGNFYASWYTLIPTSLILGFGGAPLWAAKCTYLTESGNRYAEK 124
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL--------------------KDDKG 186
++ + G F+ +F S GNLI+ + D G
Sbjct: 125 KGKLAKDIVNQYFGLFFLIFQSSGVWGNLISSLIFGQNYPAGSNDSFTDYSQCGANDCPG 184
Query: 187 -------GSTSGTTLLFIVFLGVIT----LGTILMCF------LRKEEDK-GEKETADAS 228
G+T T L LGV T L IL+ LR ++ K G KE
Sbjct: 185 TNFGNGTGTTKPTKSLIYTLLGVYTGSGVLAVILIAVFLDTINLRTDQLKPGTKEE---- 240
Query: 229 VNFYSYLVSLSKSI---TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSG 285
S SK I L D R L+IPL YSG +Q F+ ++TK VT +LG+
Sbjct: 241 --------SFSKKILATVRHLKDKRQCLLIPLTMYSGFEQGFLSGDYTKSYVTCSLGIHF 292
Query: 286 VGGAMAVYGAFDAICSLAAGRLTTGLPSIT-FIVSGGAIAQVVVFLWILINYSVTSGVLG 344
VG M + A +A+CSL G+L+ I FI++ + A V+ L + Y V
Sbjct: 293 VGYVMICFAATNAVCSLLFGQLSKYTGRICLFILAAVSNAACVIALLLWEPYPNDFAVF- 351
Query: 345 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTA 381
I A+ G+ D + TQ +AL G+LF A
Sbjct: 352 ----FIFPAIWGMADAIWQTQTNALYGVLFDEHKEAA 384
|
Xenopus laevis (taxid: 8355) |
| >sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 181/389 (46%), Gaps = 45/389 (11%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
++V ++SC FLL+F AYG QNL++++ +E LG +L LY S S+ + ++++
Sbjct: 6 KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K ++ Y +F N +WYT++P S+ LG A+ +W +GTYLT A
Sbjct: 66 GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL-------------------KDDKGG 187
V+ + G F+ +F S GNLI+ V KD G
Sbjct: 126 VGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSLVFGKMSMQEAIPEEQLMSCGAKDCLMG 185
Query: 188 STS------GTTLLFIVFLGVIT----LGTILMC-FLRKEEDK--GEKETADASVNFYSY 234
+ + L LG+ T L +L+ FL EDK E E +S
Sbjct: 186 PAATNSTHHPSQQLIYTLLGIYTGCGVLAILLVAVFLESLEDKLENEGERRPRPPPLWST 245
Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
L+S L D R+ L++ L YSG QQ F+ E+TK VT ALG+ VG M +
Sbjct: 246 LLS----TFMLFRDKRLCLLMFLPLYSGFQQEFLSGEYTKSYVTCALGIHFVGYVMICFS 301
Query: 295 AFDAICSLAAGRLTTGLPSITFIVSGGAI--AQVVVFLWILINYSVTSGVLGTLYPLIMA 352
A A+CSL G+++ G AI + +VVFL + + L + +++
Sbjct: 302 AMTALCSLLYGKISKYTGRAALYALGAAIHFSCIVVFLL----WHPNTNQLPVFF--VLS 355
Query: 353 ALLGIGDGVLNTQLSALLGILFKHDTVTA 381
L G+ D V TQ +AL G+LF+ + A
Sbjct: 356 GLWGMSDAVWQTQNNALFGVLFEENKEPA 384
|
Mus musculus (taxid: 10090) |
| >sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 187/377 (49%), Gaps = 56/377 (14%)
Query: 32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
ILS AFL +F A+ QNL+T+VN G+LG+ SL LY S SL V S ++ LG K
Sbjct: 252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309
Query: 91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
++ Y+L++ NL P++ +M+PAS++ G AAS IW + Y+T + +AS +
Sbjct: 310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369
Query: 151 EGTVIGSFNGEFWGMFASHQFVGNLI-----TLAVLKDDKGGSTS--------------- 190
+ TVI F G F+ + Q VGN++ TL+ + +G S
Sbjct: 370 QTTVIVRFFGYFFMIVHCGQVVGNMVSSYIFTLSYSQALRGPEDSIYDSCGYQFPKNLSD 429
Query: 191 ------------GTTLLFIVFLG----VITLGTILMCFLRK-EEDKGEKETADASVNFYS 233
+ V L VI G I+ FL +D ++ A F S
Sbjct: 430 LTELAESNLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKMAQ---KFNS 486
Query: 234 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 293
+ L + L +++ +L++PL ++GL+QAF+ +TK V LG+ +G MA +
Sbjct: 487 EIFYL---MLKHLINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACF 543
Query: 294 GAFDAICSLAAG---RLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI 350
G DA+CSL G +L +P F GA+ +++ + +++ + + + Y +
Sbjct: 544 GISDAVCSLVFGPLIKLFGRMPLFVF----GAVVNLLMIVTLMV-WPLNAADTQIFY--V 596
Query: 351 MAALLGIGDGVLNTQLS 367
+AA+ G+ DGV NTQ++
Sbjct: 597 VAAMWGMADGVWNTQIN 613
|
May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 186/403 (46%), Gaps = 47/403 (11%)
Query: 20 VLTPKNYTR---DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TC 74
VL P R ++ I+S AF++ F A+ NL++++N + LGT+SL +Y + +C
Sbjct: 33 VLNPGEKWRILKNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSC 92
Query: 75 FSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGT 134
L +L++R L K L+ Y ++A LFP +YT+VPA + +G A+ +W + T
Sbjct: 93 IFL-PTLIIRKLTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKAT 151
Query: 135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL------------- 181
YLT +A + +I F G F+ + S + GNLI+ VL
Sbjct: 152 YLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNT 211
Query: 182 ---KDDKG--GSTSGTT-----------------LLFIVFLGVITLG-TILMCFLRKEED 218
++D G+ TT + +++L I I+ FL +
Sbjct: 212 TVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMIYLSCIVAAVCIIAFFLDPLKR 271
Query: 219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT 278
GEK S S L LS + + + L+IP+ + G++QAF+ A+FT+ V
Sbjct: 272 YGEKRKGSNSAAELSGLQLLSATFRQ-MKKPNLQLLIPITVFIGMEQAFIGADFTQAYVA 330
Query: 279 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV 338
ALGV+ +G M +G +A+CS+ G + + IV G VV F I +
Sbjct: 331 CALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPIIVLGA----VVHFTLITVELFW 386
Query: 339 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTA 381
+ M+ L G+GD V TQ++ L G+LF+ + A
Sbjct: 387 RPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRNKEAA 429
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 182/387 (47%), Gaps = 41/387 (10%)
Query: 27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
T++V ++S FLL+F AYG Q+L++++N E +G ISL ++Y + S+ + ++++
Sbjct: 5 TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64
Query: 86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
LG K +++ Y + NL P W +++ S LG S +W + TYLT +
Sbjct: 65 LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124
Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-------------------- 185
H +I + G F+ +F S GNL++ + D+
Sbjct: 125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQNIVPKENLEFCGVSTCLDNF 184
Query: 186 ---GGSTSGTTLLFIVFLGV-ITLGTILMCF-------LRKEEDKGEKETADASVNFYSY 234
G ST + L LG I +G + + F + ++E K E + + +F+
Sbjct: 185 TVIGNSTRPSKHLVDTLLGCYIGVGLLAIIFVAVFLDNIDRDEAK-EFRSTKGNKSFWDT 243
Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
++ K + R+LL+IPL YSG +Q+F+ E+TK VT ALG+ VG M +
Sbjct: 244 FLATFKLLRD----PRLLLLIPLTMYSGFEQSFLSGEYTKNYVTCALGIHNVGFVMICFA 299
Query: 295 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 354
A +++CS A GRL I AI + FL +L + L + + AL
Sbjct: 300 ASNSLCSFAFGRLAQYTGRIALFCLAAAI-NLGSFLGLLY-WKPHPDQLAIFF--VFPAL 355
Query: 355 LGIGDGVLNTQLSALLGILFKHDTVTA 381
G+ D V TQ +AL GILF + A
Sbjct: 356 WGMADAVWQTQTNALYGILFAKNKEAA 382
|
Danio rerio (taxid: 7955) |
| >sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 183/388 (47%), Gaps = 44/388 (11%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
++V +LS FLL+F AYG Q+L++++ +E LG +L LY S+ + +++ L
Sbjct: 6 KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K L+L Y F N + SWYT++PAS+ +G A+ +W +GTYLT A
Sbjct: 66 GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLI---------TLAVLKDDK------------ 185
V+ + G F+ +F S GNLI T + +++
Sbjct: 126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLVFGQMPTQGTIPEEQLQACGASDCLMA 185
Query: 186 ----GGSTSGTTLLFIVFLGVIT----LGTILMC-FLRKEED-KGEKETADASVNFYSYL 235
+ + L LG+ T L +LM FL D + E E + F+S L
Sbjct: 186 TLSANSTNRPSQDLIYTLLGIYTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTL 245
Query: 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 295
+S K + + +LL SG +QAF+ ++T+ T ALG+ VG M +GA
Sbjct: 246 LSTFKLLRDKRLRLLILLP----MLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGA 301
Query: 296 FDAICSLAAGRLT--TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 353
DA+CS+ GRL TG T + + GA+ Q+ + +L+ + L + + +
Sbjct: 302 ADALCSVLFGRLARHTGR---TVLFALGAVTQLACIIALLL-WKPHPSQLPVFF--VFPS 355
Query: 354 LLGIGDGVLNTQLSALLGILFKHDTVTA 381
L G+ D V TQ +AL G+LF+ + A
Sbjct: 356 LWGMADAVWQTQNNALFGVLFEKNKEAA 383
|
Bos taurus (taxid: 9913) |
| >sp|O43934|MFS11_HUMAN UNC93-like protein MFSD11 OS=Homo sapiens GN=MFSD11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 168/394 (42%), Gaps = 57/394 (14%)
Query: 29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
++ IL AF+ +F A+ N+ TV N G S+ I+Y F+ +L+ V
Sbjct: 10 NIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSV 69
Query: 83 VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
V ++G + ++ Y +++A + P ++ AS+++G AA+++W +G LT +
Sbjct: 70 VAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129
Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGV 202
H+ IG +G FW + S F GNL + S S +FI +
Sbjct: 130 HS----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVI 179
Query: 203 ITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRM 251
+GT+L +RK + + GE E++D ++ N + V K L M
Sbjct: 180 SLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFKLCVTKEM 239
Query: 252 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGA-----MAVYGAFDAICSLAAGR 306
LL+ AY+GL+ F + +G + GA + + G F I + G
Sbjct: 240 LLLSITTAYTGLELTFF-----SGVYGTCIGATNKFGAEEKSLIGLSGIFIGIGEILGGS 294
Query: 307 LTTGLPSITF------IVSGGAIAQVVVFLWILINY------SVTSGVLGTLY------- 347
L GL S +V G + + F I +N + G + Y
Sbjct: 295 L-FGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAYIKSSKEV 353
Query: 348 PLIMAALLGIGDGVLNTQLSALLGILFKHDTVTA 381
++ + LLG+GD NTQL ++LG L+ D+ A
Sbjct: 354 AILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPA 387
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BJ51|MFS11_MOUSE UNC93-like protein MFSD11 OS=Mus musculus GN=Mfsd11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 166/388 (42%), Gaps = 45/388 (11%)
Query: 29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
++ IL AF+ +F A+ N+ TV N G SL I+Y F+ +L+ V
Sbjct: 10 NIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSV 69
Query: 83 VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
V ++G + ++ + Y +++A + P ++ AS+++G AA+++W +G LT +
Sbjct: 70 VAIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129
Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGV 202
H IG +G FW + S F GNL + S +FI +
Sbjct: 130 HT----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISEHDRRTVFIALTVI 179
Query: 203 ITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRM 251
+GT+L +RK + + GE+E+ D ++ N + V K L M
Sbjct: 180 SLVGTVLFFLIRKPDPENVLGEEESCDDQDMEATESAQNNVTKAVDAFKKSLRLCVTREM 239
Query: 252 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL 311
LL+ AY+GL+ F + I + + + G F I + G L L
Sbjct: 240 LLLSVTTAYTGLELTFFSGVYGTCIGAVNKFGTEEKSLIGLSGIFIGIGEILGGSLFGLL 299
Query: 312 PSITF-----IVSGGAIAQVVVFLWILINY---SVTSGVLGT-----LYP-----LIMAA 353
+ +V G + V F I +N + + V GT + P ++ +
Sbjct: 300 SKNSRFGRNPVVLLGTLVHFVAFYLIFLNMPGDAPIAPVEGTNSIAYIRPSKEVAILCSF 359
Query: 354 LLGIGDGVLNTQLSALLGILFKHDTVTA 381
LLG+GD NTQL ++LG L+ D+ A
Sbjct: 360 LLGLGDSCFNTQLLSILGFLYSEDSAPA 387
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | ||||||
| 359481565 | 444 | PREDICTED: UNC93-like protein-like [Viti | 0.964 | 0.851 | 0.767 | 1e-165 | |
| 255581050 | 439 | conserved hypothetical protein [Ricinus | 0.989 | 0.883 | 0.734 | 1e-159 | |
| 297833712 | 437 | hypothetical protein ARALYDRAFT_317751 [ | 0.977 | 0.876 | 0.715 | 1e-151 | |
| 51971130 | 437 | unnamed protein product [Arabidopsis tha | 0.979 | 0.878 | 0.708 | 1e-150 | |
| 30680880 | 437 | UNC93-like protein [Arabidopsis thaliana | 0.979 | 0.878 | 0.708 | 1e-150 | |
| 224087399 | 442 | predicted protein [Populus trichocarpa] | 0.989 | 0.877 | 0.719 | 1e-149 | |
| 30680871 | 464 | UNC93-like protein [Arabidopsis thaliana | 0.979 | 0.827 | 0.708 | 1e-149 | |
| 449439988 | 430 | PREDICTED: UNC93-like protein 3-like [Cu | 0.971 | 0.886 | 0.699 | 1e-144 | |
| 449530173 | 430 | PREDICTED: UNC93-like protein 3-like [Cu | 0.971 | 0.886 | 0.699 | 1e-144 | |
| 357510429 | 444 | UNC93-like protein [Medicago truncatula] | 0.946 | 0.835 | 0.692 | 1e-139 |
| >gi|359481565|ref|XP_002273762.2| PREDICTED: UNC93-like protein-like [Vitis vinifera] gi|147782828|emb|CAN76819.1| hypothetical protein VITISV_029718 [Vitis vinifera] gi|297741472|emb|CBI32604.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/378 (76%), Positives = 334/378 (88%)
Query: 1 MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
M+SVDSRDEE+PLV Q T +N+TRDVHILSC+FLLIFLAYGA QNLE++VNT+ +L
Sbjct: 1 MDSVDSRDEESPLVVSDSQSKTLQNHTRDVHILSCSFLLIFLAYGATQNLESSVNTDEDL 60
Query: 61 GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
GTI+LGILY SFT FSL+ASLVVR++GSKNALILGTTGYWLF+AANL P W TMVPAS+Y
Sbjct: 61 GTIALGILYLSFTIFSLIASLVVRMMGSKNALILGTTGYWLFMAANLKPRWSTMVPASVY 120
Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
LGFAAS+IWVG+GTYLTA A SHA+++ LHEGTVIG+FNGEFWGMFASHQF GNLITLA+
Sbjct: 121 LGFAASVIWVGQGTYLTATARSHANDNNLHEGTVIGNFNGEFWGMFASHQFAGNLITLAL 180
Query: 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240
LKD GS GTTLLFIVFL +TLGTILM FLR+ ++KGE+ + + +V FYSY VSLSK
Sbjct: 181 LKDGTKGSAGGTTLLFIVFLCSMTLGTILMWFLRRRDNKGEEGSLEPAVGFYSYAVSLSK 240
Query: 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIC 300
S+ T L DVRMLLIIPLF YSGLQQAFVWAEFTK IVTPALGVSGVGG+MAV+GAFDAIC
Sbjct: 241 SVITPLFDVRMLLIIPLFVYSGLQQAFVWAEFTKYIVTPALGVSGVGGSMAVFGAFDAIC 300
Query: 301 SLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360
SLAAGRLT+GL SIT+IVSGGA AQV+V LWIL+ Y VTSGVLGT+YPL+MAA+ GIGDG
Sbjct: 301 SLAAGRLTSGLLSITWIVSGGAFAQVIVLLWILLKYRVTSGVLGTIYPLLMAAIWGIGDG 360
Query: 361 VLNTQLSALLGILFKHDT 378
V NTQ++AL+GILFK+DT
Sbjct: 361 VFNTQINALIGILFKNDT 378
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581050|ref|XP_002531341.1| conserved hypothetical protein [Ricinus communis] gi|223529063|gb|EEF31048.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/392 (73%), Positives = 335/392 (85%), Gaps = 4/392 (1%)
Query: 1 MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
M + D+RDEE PLV D+LQ P+N+TRD+HILS AFLL+FLAYGAAQNL+TT+NT +L
Sbjct: 1 MATEDARDEERPLVLDNLQNHAPQNHTRDIHILSSAFLLVFLAYGAAQNLQTTINTVHDL 60
Query: 61 GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
GTISLGILY SFT FS++ASLVVR LGSKNA++LGTTGYWLF+AANL P+WYTMVPASLY
Sbjct: 61 GTISLGILYLSFTFFSVIASLVVRFLGSKNAVVLGTTGYWLFIAANLMPTWYTMVPASLY 120
Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
LGFAASIIWVG+GTYLT+ A SHA+++ LHEGTVIG+FNGEFWG+FA HQ VGNLI+LA+
Sbjct: 121 LGFAASIIWVGQGTYLTSTARSHAADYDLHEGTVIGNFNGEFWGVFACHQLVGNLISLAI 180
Query: 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240
L+D GG+TSGTTLLF VFL ++TLG ILMCFL K KGE+ D+SV+ YS L+S SK
Sbjct: 181 LRDGTGGTTSGTTLLFFVFLCIVTLGIILMCFLSKRVPKGEEGREDSSVSLYSSLISKSK 240
Query: 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIC 300
S+ L D+RMLLIIPL AYSGLQQAFVWAEFTK+IVTPALGVSGVGG+MAVYGAFDAIC
Sbjct: 241 SVIAPLLDIRMLLIIPLIAYSGLQQAFVWAEFTKDIVTPALGVSGVGGSMAVYGAFDAIC 300
Query: 301 SLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360
SLAAGRLT+GL SIT+IVS GA +VFLWIL+ YS+TSG+LG LYPL+MAA+LG+GDG
Sbjct: 301 SLAAGRLTSGLQSITWIVSAGAFLHAIVFLWILLKYSLTSGILGVLYPLLMAAMLGVGDG 360
Query: 361 VLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
VLNTQLSALLGILFKHD A Q+ VW
Sbjct: 361 VLNTQLSALLGILFKHDMEGA----FAQLKVW 388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833712|ref|XP_002884738.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata] gi|297330578|gb|EFH60997.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 281/393 (71%), Positives = 320/393 (81%), Gaps = 10/393 (2%)
Query: 4 VDSR-DEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
+DSR DEEAPLV+ + + K+YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1 MDSRNDEEAPLVSASGEDRKFRAGKSYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58
Query: 60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
LGTISLGILY SF S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct: 59 LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118
Query: 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
YLGFAASIIWVG+GTYLT+ A SHA +H LHEG+VIG FNGEFW MFA HQ GNLITLA
Sbjct: 119 YLGFAASIIWVGQGTYLTSIARSHAKDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178
Query: 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS 239
+LKD K GSTSGTTLL +VFL +TLGTILM F+RK + + KE + V LVSL
Sbjct: 179 LLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKEPVGSPVGLVDSLVSLP 238
Query: 240 KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
+ I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA DA+
Sbjct: 239 RMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAV 298
Query: 300 CSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 359
CS+ AGR T+GL SITFI+SGGA+AQ VFLW+L+ Y TSGVLGT YPLIMAA+LGIGD
Sbjct: 299 CSMTAGRFTSGLSSITFIISGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGIGD 358
Query: 360 GVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
G+LNTQ+SALL +LFKHDT A Q+ VW
Sbjct: 359 GILNTQISALLALLFKHDTEGA----FAQLKVW 387
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51971130|dbj|BAD44257.1| unnamed protein product [Arabidopsis thaliana] gi|51971419|dbj|BAD44374.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/395 (70%), Positives = 318/395 (80%), Gaps = 11/395 (2%)
Query: 1 MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
MES DEEAPL++ + +V K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1 MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58
Query: 58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
LGTISLGILY SF S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59 --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116
Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176
Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
LA+LKD K GSTSGTTLL +VFL +TLGTILM F+RK + + K + V L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236
Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296
Query: 298 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357
A+CS+ AGR T+GL SITFIVSGGA+AQ VFLW+L+ Y TSGVLGT YPLIMAA+LGI
Sbjct: 297 AVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGI 356
Query: 358 GDGVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
GDG+LNTQ+SALL +LFKHDT A Q+ VW
Sbjct: 357 GDGILNTQISALLALLFKHDTEGA----FAQLRVW 387
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680880|ref|NP_850546.1| UNC93-like protein [Arabidopsis thaliana] gi|51971813|dbj|BAD44571.1| unnamed protein product [Arabidopsis thaliana] gi|222423196|dbj|BAH19575.1| AT3G09470 [Arabidopsis thaliana] gi|332641250|gb|AEE74771.1| UNC93-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/395 (70%), Positives = 318/395 (80%), Gaps = 11/395 (2%)
Query: 1 MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
MES DEEAPL++ + +V K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1 MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58
Query: 58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
LGTISLGILY SF S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59 --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116
Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176
Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
LA+LKD K GSTSGTTLL +VFL +TLGTILM F+RK + + K + V L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236
Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296
Query: 298 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357
A+CS+ AGR T+GL SITFIVSGGA+AQ VFLW+L+ Y TSGVLGT YPLIMAA+LGI
Sbjct: 297 AVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGI 356
Query: 358 GDGVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
GDG+LNTQ+SALL +LFKHDT A Q+ VW
Sbjct: 357 GDGILNTQISALLALLFKHDTEGA----FAQLKVW 387
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087399|ref|XP_002308151.1| predicted protein [Populus trichocarpa] gi|222854127|gb|EEE91674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/396 (71%), Positives = 330/396 (83%), Gaps = 8/396 (2%)
Query: 1 MESVDS-RDEEAPLVADSLQV---LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNT 56
M S+D+ RDEE P VA + V T +N+T+DVHILS AFLLIFLAYGAAQNLETT+NT
Sbjct: 1 MASMDNNRDEEEPFVAAAASVDNSETLRNHTKDVHILSSAFLLIFLAYGAAQNLETTLNT 60
Query: 57 EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVP 116
+ ++GTISLGILY SFT FSL+AS VVR +GSKNA++LGT+GYWLF+AANL P+WYTMVP
Sbjct: 61 KDDMGTISLGILYVSFTFFSLIASSVVRFMGSKNAVLLGTSGYWLFIAANLKPTWYTMVP 120
Query: 117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
ASLYLGFAASIIWVG+GTYLT+ A S A ++ LHEGTVIG+FNGEFWGMFASHQFVGNLI
Sbjct: 121 ASLYLGFAASIIWVGQGTYLTSTARSQARDYHLHEGTVIGNFNGEFWGMFASHQFVGNLI 180
Query: 177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLV 236
+LA+L++ GSTSGTTLLF VFL +TLGTIL+CFL K D GE+ D+SV+ YS L
Sbjct: 181 SLAILRNGTEGSTSGTTLLFTVFLCSMTLGTILVCFLSKRVDGGEEGPKDSSVSLYSSLT 240
Query: 237 SLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAF 296
SLSKS+ T L DVRMLLIIPL AYSGLQQAFVWAEFT++I TPALGVSGVGG+MAVYGAF
Sbjct: 241 SLSKSVITPLLDVRMLLIIPLIAYSGLQQAFVWAEFTEKIATPALGVSGVGGSMAVYGAF 300
Query: 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG 356
D ICS AGRLT+G+ SIT+IVS G Q VVFLWIL+ YS+TSGVLG +YPL+MAA+LG
Sbjct: 301 DTICSFTAGRLTSGIFSITWIVSAGLFLQAVVFLWILLKYSLTSGVLGIVYPLLMAAMLG 360
Query: 357 IGDGVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
IGDG +NTQLSALLGILFKHDT A Q+ VW
Sbjct: 361 IGDGAINTQLSALLGILFKHDTEGA----FAQLKVW 392
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680871|ref|NP_187558.2| UNC93-like protein [Arabidopsis thaliana] gi|67462074|sp|Q94AA1.1|UN933_ARATH RecName: Full=UNC93-like protein 3 gi|15146218|gb|AAK83592.1| AT3g09470/F11F8_4 [Arabidopsis thaliana] gi|28460681|gb|AAO43565.1| At3g09470/F11F8_4 [Arabidopsis thaliana] gi|332641249|gb|AEE74770.1| UNC93-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 280/395 (70%), Positives = 319/395 (80%), Gaps = 11/395 (2%)
Query: 1 MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
MES + DEEAPL++ + +V K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1 MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58
Query: 58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
LGTISLGILY SF S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59 --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116
Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176
Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
LA+LKD K GSTSGTTLL +VFL +TLGTILM F+RK + + K + V L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236
Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296
Query: 298 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357
A+CS+ AGR T+GL SITFIVSGGA+AQ VFLW+L+ Y TSGVLGT YPLIMAA+LGI
Sbjct: 297 AVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGI 356
Query: 358 GDGVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
GDG+LNTQ+SALL +LFKHDT A Q+ VW
Sbjct: 357 GDGILNTQISALLALLFKHDTEGA----FAQLKVW 387
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439988|ref|XP_004137767.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 272/389 (69%), Positives = 325/389 (83%), Gaps = 8/389 (2%)
Query: 4 VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
+DS DEEA L+ ++ + P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT
Sbjct: 1 MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60
Query: 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61 SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120
Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
AASIIWV +GTYLT+ A +HA + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180
Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
+ GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E + S + +S ++SLSKS+
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILSLSKSVV 239
Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLA 303
LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA DA+CSL
Sbjct: 240 APLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAADAVCSLV 299
Query: 304 AGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 363
AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+ S T LGT+Y L+++A+LGIGDGV N
Sbjct: 300 AGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYLLLISAVLGIGDGVFN 356
Query: 364 TQLSALLGILFKHDTVTANPTLIRQIFVW 392
TQL+ALLGILFKHDT A Q+ VW
Sbjct: 357 TQLNALLGILFKHDTEGA----FAQLKVW 381
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530173|ref|XP_004172070.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 272/389 (69%), Positives = 325/389 (83%), Gaps = 8/389 (2%)
Query: 4 VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
+DS DEEA L+ ++ + P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT
Sbjct: 1 MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60
Query: 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61 SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120
Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
AASIIWV +GTYLT+ A +HA + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180
Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
+ GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E + S + +S ++SLSKS+
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILSLSKSVV 239
Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLA 303
LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA DA+CSL
Sbjct: 240 APLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAADAVCSLV 299
Query: 304 AGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 363
AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+ S T LGT+Y L+++A+LGIGDGV N
Sbjct: 300 AGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYLLLISAVLGIGDGVFN 356
Query: 364 TQLSALLGILFKHDTVTANPTLIRQIFVW 392
TQL+ALLGILFKHDT A Q+ VW
Sbjct: 357 TQLNALLGILFKHDTEGA----FAQLKVW 381
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510429|ref|XP_003625503.1| UNC93-like protein [Medicago truncatula] gi|355500518|gb|AES81721.1| UNC93-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/374 (69%), Positives = 306/374 (81%), Gaps = 3/374 (0%)
Query: 7 RDEEAPLVADSLQVLTP-KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL 65
DEE PLV +S L P K+++RDVHILS AF+LIFLAYGAAQNL++T+NTE +LGT SL
Sbjct: 8 HDEETPLVVESPIQLQPHKSHSRDVHILSIAFVLIFLAYGAAQNLQSTLNTEEDLGTTSL 67
Query: 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAA 125
GILY SFT FS+ ASLVVR+LGSKNALI+GT+GYWL+VAANL P+WYT+VPAS+YLGF A
Sbjct: 68 GILYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAANLKPNWYTLVPASVYLGFCA 127
Query: 126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185
SIIWVG+GTYLT+ A SHA ++ LHEG VIG FNGEFW ++A HQF+GNLIT A+L D +
Sbjct: 128 SIIWVGQGTYLTSTAHSHAIDNNLHEGAVIGDFNGEFWAVYALHQFIGNLITFALLSDGQ 187
Query: 186 GGSTSGTTLLFIVFLGVITLGTILMCFLRKE--EDKGEKETADASVNFYSYLVSLSKSIT 243
GGST+GTTLLF+VFL V+T G ILM FL K K E + ++A V L SL KS+T
Sbjct: 188 GGSTNGTTLLFVVFLFVMTFGAILMFFLHKRIGNSKEEYKNSEADVVESKSLKSLCKSLT 247
Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLA 303
+ L+D +MLLIIPL AYSGLQQAFVWAEFTK +VTPA+GVSGVG AMA YGAFD ICSLA
Sbjct: 248 SALSDAKMLLIIPLMAYSGLQQAFVWAEFTKFVVTPAIGVSGVGIAMAAYGAFDGICSLA 307
Query: 304 AGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 363
AGRLT+GL SIT IVS GA AQ V + +L+N+S++SG LGT Y L +AALLGIGDGVL
Sbjct: 308 AGRLTSGLTSITSIVSFGAFAQAVALILLLLNFSISSGFLGTSYILFLAALLGIGDGVLM 367
Query: 364 TQLSALLGILFKHD 377
TQL+ALLGILFKHD
Sbjct: 368 TQLNALLGILFKHD 381
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | ||||||
| TAIR|locus:2074929 | 464 | AT3G09470 "AT3G09470" [Arabido | 0.977 | 0.825 | 0.712 | 3.9e-140 | |
| UNIPROTKB|Q86WB7 | 457 | UNC93A "Protein unc-93 homolog | 0.390 | 0.334 | 0.357 | 2e-37 | |
| UNIPROTKB|A2VE54 | 457 | UNC93A "Protein unc-93 homolog | 0.390 | 0.334 | 0.344 | 3e-34 | |
| FB|FBgn0027556 | 538 | CG4928 [Drosophila melanogaste | 0.423 | 0.308 | 0.333 | 8.3e-34 | |
| ZFIN|ZDB-GENE-041014-304 | 467 | unc93a "unc-93 homolog A (C. e | 0.405 | 0.340 | 0.293 | 2.4e-33 | |
| MGI|MGI:1933250 | 458 | Unc93a "unc-93 homolog A (C. e | 0.387 | 0.331 | 0.341 | 8e-33 | |
| WB|WBGene00006822 | 705 | unc-93 [Caenorhabditis elegans | 0.367 | 0.204 | 0.394 | 2.4e-32 | |
| UNIPROTKB|Q93380 | 705 | unc-93 "Putative potassium cha | 0.367 | 0.204 | 0.394 | 2.4e-32 | |
| UNIPROTKB|E2QT36 | 456 | UNC93A "Uncharacterized protei | 0.390 | 0.335 | 0.324 | 1.1e-31 | |
| UNIPROTKB|F1MB34 | 455 | F1MB34 "Uncharacterized protei | 0.443 | 0.382 | 0.340 | 4.1e-28 |
| TAIR|locus:2074929 AT3G09470 "AT3G09470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
Identities = 280/393 (71%), Positives = 319/393 (81%)
Query: 4 VDSR-DEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
++SR DEEAPL++ S +V K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1 MESRNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58
Query: 60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
LGTISLGILY SF S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct: 59 LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118
Query: 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
YLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ GNLITLA
Sbjct: 119 YLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178
Query: 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS 239
+LKD K GSTSGTTLL +VFL +TLGTILM F+RK + + K + V L SL
Sbjct: 179 LLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLASLP 238
Query: 240 KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
+ I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA DA+
Sbjct: 239 RMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAV 298
Query: 300 CSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 359
CS+ AGR T+GL SITFIVSGGA+AQ VFLW+L+ Y TSGVLGT YPLIMAA+LGIGD
Sbjct: 299 CSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAAILGIGD 358
Query: 360 GVLNTQLSALLGILFKHDTVTANPTLIRQIFVW 392
G+LNTQ+SALL +LFKHDT A Q+ VW
Sbjct: 359 GILNTQISALLALLFKHDTEGA----FAQLKVW 387
|
|
| UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
R+V ++S FLL+F AYG Q+L++++ +E LG +L LY S+ + L++ L
Sbjct: 6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K +IL GY F N F SWYT++P S+ LG A+ +W + TYLT +HA
Sbjct: 66 GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
++ + G F+ +F S GNLI+ V
Sbjct: 126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLV 159
|
|
| UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 53/154 (34%), Positives = 83/154 (53%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
++V +LS FLL+F AYG Q+L++++ +E LG +L LY S+ + +++ L
Sbjct: 6 KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K L+L Y F N + SWYT++PAS+ +G A+ +W +GTYLT A
Sbjct: 66 GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
V+ + G F+ +F S GNLI+ V
Sbjct: 126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLV 159
|
|
| FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 57/171 (33%), Positives = 95/171 (55%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TCFSLVASLVVRV 85
+++ I+S AF++ F A+ NL++++N + LGT+SL +Y + +C L +L++R
Sbjct: 44 KNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFL-PTLIIRK 102
Query: 86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
L K L+ Y ++A LFP +YT+VPA + +G A+ +W + TYLT +A
Sbjct: 103 LTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAK 162
Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTL 194
+ +I F G F+ + S + GNLI+ VL GGS+S TT+
Sbjct: 163 ITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNTTV 213
|
|
| ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 47/160 (29%), Positives = 85/160 (53%)
Query: 27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
T++V ++S FLL+F AYG Q+L++++N E +G ISL ++Y + S+ + ++++
Sbjct: 5 TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64
Query: 86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
LG K +++ Y + NL P W +++ S LG S +W + TYLT +
Sbjct: 65 LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124
Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185
H +I + G F+ +F S GNL++ + D+
Sbjct: 125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQ 164
|
|
| MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 8.0e-33, Sum P(2) = 8.0e-33
Identities = 53/155 (34%), Positives = 86/155 (55%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
++V ++SC FLL+F AYG QNL++++ +E LG +L LY S S+ + ++++
Sbjct: 6 KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K ++ Y +F N +WYT++P S+ LG A+ +W +GTYLT A
Sbjct: 66 GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125
Query: 147 -HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
KL + V+ + G F+ +F S GNLI+ V
Sbjct: 126 VGKLGKD-VVNQYFGIFFLVFQSSGVWGNLISSLV 159
|
|
| WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 58/147 (39%), Positives = 88/147 (59%)
Query: 32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
ILS AFL +F A+ QNL+T+VN G+LG+ SL LY S SL V S ++ LG K
Sbjct: 252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309
Query: 91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
++ Y+L++ NL P++ +M+PAS++ G AAS IW + Y+T + +AS +
Sbjct: 310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369
Query: 151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
+ TVI F G F+ + Q VGN+++
Sbjct: 370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396
|
|
| UNIPROTKB|Q93380 unc-93 "Putative potassium channel regulatory protein unc-93" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 58/147 (39%), Positives = 88/147 (59%)
Query: 32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
ILS AFL +F A+ QNL+T+VN G+LG+ SL LY S SL V S ++ LG K
Sbjct: 252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309
Query: 91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
++ Y+L++ NL P++ +M+PAS++ G AAS IW + Y+T + +AS +
Sbjct: 310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369
Query: 151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
+ TVI F G F+ + Q VGN+++
Sbjct: 370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396
|
|
| UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 50/154 (32%), Positives = 82/154 (53%)
Query: 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
++V ++S FLL+F AYG Q+L++++ E LG +L LY S+ + L+++
Sbjct: 6 KNVLVVSFGFLLLFTAYGGLQSLQSSLYREEGLGVTALSTLYGGVLLSSMFLPPLLIKKF 65
Query: 87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
G K +++ Y F N + SWYT++P S+ LG A+ +W + TYLT + A N
Sbjct: 66 GCKWTIVVSMCCYVAFSLGNFYASWYTLIPTSILLGLGAAPLWSAQCTYLTIMGNTEAKN 125
Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
V+ + G F+ +F S GNLI+ V
Sbjct: 126 VGKVGRDVVNQYFGIFFLIFQSSGVWGNLISSLV 159
|
|
| UNIPROTKB|F1MB34 F1MB34 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 64/188 (34%), Positives = 97/188 (51%)
Query: 198 VFLGVITLGTILMC-FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 255
+F G L +LM FL D + E E + F+S L+S K LL D R+ L+I
Sbjct: 204 LFTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTLLSTFK----LLRDKRLRLLI 259
Query: 256 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPS 313
L SG +QAF+ ++T+ T ALG+ VG M +GA DA+CS+ GRL TG
Sbjct: 260 LLPMLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGR-- 317
Query: 314 ITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373
T + + GA+ Q+ + +L+ + L + + +L G+ D V TQ +AL G+L
Sbjct: 318 -TVLFALGAVTQLACIIALLL-WKPHPSQLPVFF--VFPSLWGMADAVWQTQNNALFGVL 373
Query: 374 FKHDTVTA 381
F+ + A
Sbjct: 374 FEKNKEAA 381
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AA1 | UN933_ARATH | No assigned EC number | 0.7088 | 0.9795 | 0.8275 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 392 | |||
| pfam05978 | 157 | pfam05978, UNC-93, Ion channel regulatory protein | 4e-15 |
| >gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93 | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-15
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 33 LSCAFLLIFLAYGAAQNLETTV----------NTEGNLGTISLGILYTSFTCFSLVASLV 82
L FL +F A+ + + +V G SL I+Y FT L A V
Sbjct: 1 LGFGFLFLFTAFDSQGFILESVIHSLHERDPGTISAYAGYYSLAIIYFFFTVSCLFAPSV 60
Query: 83 VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
V +L K A+++G Y F LF + Y + +S LG A+ +W G+G YLT
Sbjct: 61 VDILTPKWAMVIGALCYASFQLGFLFLNSYYLYFSSALLGVGAAFLWTGQGQYLT----E 116
Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
+++ I W + S G +
Sbjct: 117 NSTRET------IERNTSIQWAIGKSSLIFGGIF 144
|
This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 99.94 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.94 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.92 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.92 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.9 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.89 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.89 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.89 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.88 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.88 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.88 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.87 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.87 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.87 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.87 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.86 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.86 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.86 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.86 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.86 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.85 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.84 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.83 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.81 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.81 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.81 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.8 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.79 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.77 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.77 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.77 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.76 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 99.75 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.74 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.72 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.71 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.71 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.69 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.69 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.66 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.65 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.64 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.58 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.58 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.58 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.57 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.56 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.55 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.52 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.52 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.51 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.49 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.47 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.44 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.43 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.4 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.4 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.26 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.24 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.19 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.17 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.17 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.16 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.14 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.13 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.1 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.07 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.04 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.02 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.99 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.92 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.89 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.87 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.85 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.81 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.81 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.81 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.79 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.75 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.74 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.73 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.73 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.72 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.69 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.68 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.68 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.66 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.65 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.65 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.63 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.62 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.61 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.6 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.59 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.59 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.59 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.57 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.57 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.55 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.54 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.54 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.51 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.5 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.49 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.49 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.48 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.48 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.47 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.47 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.45 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.44 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.43 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.41 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.41 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.36 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.35 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.34 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.31 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.31 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.31 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.3 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.29 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.26 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.25 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.25 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.24 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.23 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.23 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.21 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.19 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.18 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.17 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.16 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.15 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.12 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.11 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.08 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.07 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.07 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.06 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.05 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.04 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.03 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.03 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.02 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.02 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.02 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.01 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.01 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.99 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.92 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.92 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.9 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 97.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.85 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.8 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.79 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.79 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.61 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.59 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.55 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.54 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.49 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.46 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.32 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.32 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 97.31 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.29 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.28 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.24 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.2 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.16 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.07 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.06 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.99 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.76 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.66 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.64 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.5 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 96.4 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 95.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 95.56 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.15 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.04 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.95 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.89 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.78 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.69 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.64 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.12 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.02 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 93.56 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 93.08 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 93.03 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.35 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 91.32 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.23 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 89.15 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 88.13 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 87.82 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 86.99 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 86.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 85.63 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 85.42 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 85.02 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 84.13 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=215.08 Aligned_cols=328 Identities=14% Similarity=0.095 Sum_probs=232.6
Q ss_pred cCccccchhHHHHHHHHHHH-HHHHH---hHHHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhh
Q 016266 21 LTPKNYTRDVHILSCAFLLI-FLAYG---AAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGT 96 (392)
Q Consensus 21 ~~~~~~~~~~~~l~~~~~~~-~~~~~---~~~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~ 96 (392)
+.+++.++.++.++++.+.+ .+.+. .+..+.++++.++..--...+.+-.+++++.++...+.||+.||++++...
T Consensus 6 ~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l 85 (394)
T COG2814 6 TARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL 85 (394)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 34556777777777776655 33443 334666666665443333455665677889999999999999999999999
Q ss_pred hHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhH
Q 016266 97 TGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL 175 (392)
Q Consensus 97 ~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~ 175 (392)
.++.+.... .++|||..++++|++.|+..|.+|+....+.++.. ||++|++++++...+..++.++|..
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv----------pp~~~~~Aiaiv~~G~tlA~v~GvP 155 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV----------PPGKRGRALALVFTGLTLATVLGVP 155 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CccchhhHHHHHHHHHHHHHHHhcc
Confidence 999888775 58999999999999999999999999999888886 8999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHH
Q 016266 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI 254 (392)
Q Consensus 176 i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 254 (392)
++..+-+. +|||.+ |.+..+++++..+.. ..+|+++.+++++ . ..++..+.+|+|+.+..
T Consensus 156 LGt~ig~~-----~GWR~~-F~~ia~l~ll~~~~~~~~lP~~~~~~~~~---------~----~~~~~~~~l~~p~v~~~ 216 (394)
T COG2814 156 LGTFLGQL-----FGWRAT-FLAIAVLALLALLLLWKLLPPSEISGSLP---------G----PLRTLLRLLRRPGVLLG 216 (394)
T ss_pred HHHHHHHH-----hhHHHH-HHHHHHHHHHHHHHHHHhCCCccCCCCCC---------c----chhHHHHHhcCchHHHH
Confidence 98887654 589986 555566666555443 3455111111110 1 11234467899998765
Q ss_pred HHHH--HhhhHHhhhhhcccchhhhc-cccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHH
Q 016266 255 IPLF--AYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW 331 (392)
Q Consensus 255 ~~~~--~~~g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~ 331 (392)
.... .+.|....| ++..|.+.+ .+++.+.+++++.++|++..+|+.++||+.|| +.|+.+ .....+.++.++.
T Consensus 217 l~~t~l~~~g~F~~f--tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l-~~~~~l~a~~~l~ 292 (394)
T COG2814 217 LLATFLFMTGHFALY--TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL-IAALLLLALALLA 292 (394)
T ss_pred HHHHHHHHcchhhhH--HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH-HHHHHHHHHHHHH
Confidence 5432 223332222 333344432 23455678999999999999999999999999 666644 3444455555433
Q ss_pred HHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhhh
Q 016266 332 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLIR 387 (392)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~~ 387 (392)
+.+.+++ .+...+..++||+.........+..+.+..||+++.+.+.|+.
T Consensus 293 --l~~~~~~----~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~a 342 (394)
T COG2814 293 --LTFTGAS----PALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVA 342 (394)
T ss_pred --HHHhcch----HHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHH
Confidence 2333332 3566666677999988888888888888778999999988865
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-25 Score=213.09 Aligned_cols=283 Identities=14% Similarity=0.058 Sum_probs=191.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+.....+++++++.|++.||+|||+++..+..++++.... ..+++++.+++.|+++|++.+..++...+++.++.
T Consensus 50 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~--- 126 (390)
T PRK03545 50 LTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVA--- 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 44555567788899999999999999999999888776654 47899999999999999999998888888888876
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEK 222 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~ 222 (392)
|+|||++++|+...+.+.|..+|+.++..+.++ .+||.. |.+.+++.++..+.. ..++++++ + +
T Consensus 127 -------~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-----~gw~~~-f~~~~~~~~l~~~~~~~~~~~~~~-~-~ 191 (390)
T PRK03545 127 -------PAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-----LGWRTT-FLAIGGGALITLLLLIKLLPLLPS-E-H 191 (390)
T ss_pred -------ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-----hcHHHH-HHHHHHHHHHHHHHHHHhCCCCCC-C-C
Confidence 788999999999999999999999888776543 479875 555555544443332 23333211 1 0
Q ss_pred ccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc-cccccchhhHHHHHHhHHHHHHH
Q 016266 223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
+ .+ .++..+.+|||+++......+..........+..++.+.+ .+.+.++.+.+....+++.++++
T Consensus 192 ~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~ 258 (390)
T PRK03545 192 S---------GS----LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS 258 (390)
T ss_pred c---------ch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 1 01 1223356788877644332221111111111222222222 12334567888888999999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCcccc
Q 016266 302 LAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTA 381 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a 381 (392)
++.|+++||+++|+ +. .+..+..++... +....++ .+.++++.+++|++.+...+..++.+.+..|++++.+
T Consensus 259 ~~~g~l~dr~~~~~-~~-~~~~~~~~~~~~-l~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (390)
T PRK03545 259 VLFSRLGNRHPSGF-LL-IAIALLLVCLLL-LLPAANS-----EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVA 330 (390)
T ss_pred HHHHHHhhccchhH-HH-HHHHHHHHHHHH-HHHHhch-----HHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHH
Confidence 99999999998765 33 343333333222 1122222 3566678889999988877888888999999888888
Q ss_pred chhhh
Q 016266 382 NPTLI 386 (392)
Q Consensus 382 ~~~~~ 386 (392)
++.++
T Consensus 331 ~g~~~ 335 (390)
T PRK03545 331 MALFS 335 (390)
T ss_pred HHHHH
Confidence 88664
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=211.21 Aligned_cols=349 Identities=34% Similarity=0.478 Sum_probs=262.2
Q ss_pred CCcCccCcccccccccc---CccccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHH
Q 016266 5 DSRDEEAPLVADSLQVL---TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASL 81 (392)
Q Consensus 5 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~ 81 (392)
+-++++++..++....- .++...||+.++++++++.|.+|...+++|..++. ++|..+.+..|.....++.+.+.
T Consensus 3 ~~~~~~~~~~s~~~~~~~~r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~ 80 (390)
T KOG3097|consen 3 LVGAYPNYNESEEEERRYRRKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPL 80 (390)
T ss_pred ccccccCCCCCCcccchhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHH
Confidence 45677777766554111 12236789999999999999999999999999986 78888889999999999999999
Q ss_pred HHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC-CCccchhhhhHH
Q 016266 82 VVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK-LHEGTVIGSFNG 160 (392)
Q Consensus 82 l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~rg~~~g 160 (392)
+++++|.|++|+++...|..+...+..|.|++++++.+..|+|+++.|.+.++|++++.++|+.+.. +.....+.+..|
T Consensus 81 ~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg 160 (390)
T KOG3097|consen 81 LIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFG 160 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehh
Confidence 9999999999999999999999999999999999999999999999999999999999999887652 222333578999
Q ss_pred HHHHHHHHhhhhhhHhhhhhccC---C---C-------C--------C--CCCcch--------hHHHHHHHHHHHHHHH
Q 016266 161 EFWGMFASHQFVGNLITLAVLKD---D---K-------G--------G--STSGTT--------LLFIVFLGVITLGTIL 209 (392)
Q Consensus 161 ~~~~~~~~g~~~G~~i~~~~~~~---~---~-------~--------~--~~~wr~--------~~f~i~~~~~~~~~~~ 209 (392)
.+++++.+++..|+.++..+... . + . + ..+-+. ..=.++...++++.++
T Consensus 161 ~Ffii~~~~qv~gn~issli~~~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~ 240 (390)
T KOG3097|consen 161 EFFIIFQCAQVWGNLISSLIMTLFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLI 240 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHH
Confidence 99999999999998876544310 0 0 0 0 001100 0001233333333333
Q ss_pred HHhccCC---ccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccchh
Q 016266 210 MCFLRKE---EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV 286 (392)
Q Consensus 210 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~ 286 (392)
..+.-+. +.+++-+ +.+..+.+.-+++.++|+|+.++.|...+.|.++.|..++++..+..+.+|.+.+
T Consensus 241 ~~~~~~~l~r~~~~r~~--------~~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~i 312 (390)
T KOG3097|consen 241 MLFFLGALKRYGEKRLA--------SVSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRI 312 (390)
T ss_pred HHHHHHHHhhhhhhhhh--------cccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 2221111 1111111 1122334456678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHH
Q 016266 287 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL 366 (392)
Q Consensus 287 ~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~ 366 (392)
++++..++++..+.+.+.|-|+.++||-. +...|++....-+ .....|.+++. +.+.+++.+.+||++|+.+++..
T Consensus 313 gf~m~cfgv~~Av~S~~~g~L~~~~gr~~-~~v~gavv~l~li-~~~~~w~~~~~--~~~i~y~~aalwgv~d~vw~t~i 388 (390)
T KOG3097|consen 313 GFAMACFGVGDAVASSLFGLLGKWIGRPP-LLVLGAVVHLLLI-TILFFWAPNPQ--DSWIFYVAAALWGVGDAVWKTQI 388 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHH-HHHHhcccCCC--CceEEEeehhhcCccHHHHHhhc
Confidence 99999999999999999999999999764 5556776554332 23456877653 24678899999999999998775
Q ss_pred H
Q 016266 367 S 367 (392)
Q Consensus 367 ~ 367 (392)
+
T Consensus 389 n 389 (390)
T KOG3097|consen 389 N 389 (390)
T ss_pred C
Confidence 4
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=212.46 Aligned_cols=351 Identities=26% Similarity=0.384 Sum_probs=256.4
Q ss_pred CccccchhHHHHHHHHHHHHHHHHhHHHhHhhhc----c------CCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHH
Q 016266 22 TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVN----T------EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNA 91 (392)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~----~------~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~ 91 (392)
++++..+|+..++.++++++.+|.+-..+++.+. . +++.|..+.++.|..+.++++++|++.|+.|+|+.
T Consensus 3 ~~~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~ 82 (461)
T KOG3098|consen 3 PRRFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWA 82 (461)
T ss_pred cccchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHH
Confidence 4557789999999999999999998887776652 1 25677888999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhh
Q 016266 92 LILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQF 171 (392)
Q Consensus 92 l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~ 171 (392)
|+++..+|..+..+.+.+|-+.++.+..+.|+|.+..|..++.|+++++ +++++.+..++.|+...++.+
T Consensus 83 lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~s----------t~~tie~Nisi~Wai~~~~li 152 (461)
T KOG3098|consen 83 LVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNS----------TRETIERNISIFWAIGQSSLI 152 (461)
T ss_pred HHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcC----------ChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888899999999999999999999999998 567899999999999999999
Q ss_pred hhhHhhhhhccCCCC---CCCCcchhHH----------HHHHHHHHHHHHHH-HhccCCccccccccccccchhhhhHHH
Q 016266 172 VGNLITLAVLKDDKG---GSTSGTTLLF----------IVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVS 237 (392)
Q Consensus 172 ~G~~i~~~~~~~~~~---~~~~wr~~~f----------~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (392)
+|+++...+..+... ...+.+...+ .++.++.....+.. -..+.|.+....+ ++.. +.+.++
T Consensus 153 ~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~---~~~~-~~~~~~ 228 (461)
T KOG3098|consen 153 IGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNC---KSSS-ETSFSE 228 (461)
T ss_pred hhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhh---hhhc-cccHHH
Confidence 998887666554321 1122321111 11111111111111 1111111111000 0001 135677
Q ss_pred HHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhh-ccccccc---hhhHHHHHHhHHHHHHHhhhhhhccCC--
Q 016266 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVS---GVGGAMAVYGAFDAICSLAAGRLTTGL-- 311 (392)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~g~s---~~~~~~~~~gi~~~~g~~~~G~lsd~~-- 311 (392)
.++...+.+++++++.+.|.+++.|+..+++.+.|+..+. +...+.+ ..+.-....|++++++....+.++||+
T Consensus 229 ~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~ 308 (461)
T KOG3098|consen 229 LLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG 308 (461)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Confidence 7888889999999999999999999999999888886654 2123322 245556778888889888888888775
Q ss_pred -CCchhhHHHHHHHHHHHHHHHHhccccCCC---------ccc--hHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCcc
Q 016266 312 -PSITFIVSGGAIAQVVVFLWILINYSVTSG---------VLG--TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTV 379 (392)
Q Consensus 312 -g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~---------~~~--~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~ 379 (392)
|++. .+.++.+++.+..+++.+..+.+.+ ..+ .....++.+++|++|+.+++..+.++++.+|+++.
T Consensus 309 fg~~~-~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~ 387 (461)
T KOG3098|consen 309 FGRKP-TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRA 387 (461)
T ss_pred cccCc-chhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchH
Confidence 4544 5567777777665554433332221 011 24678888999999999999999999999999999
Q ss_pred ccchhhhh
Q 016266 380 TANPTLIR 387 (392)
Q Consensus 380 ~a~~~~~~ 387 (392)
++++.+.+
T Consensus 388 ~~fsi~kf 395 (461)
T KOG3098|consen 388 QAFSLFKF 395 (461)
T ss_pred HHHHHHHH
Confidence 99887653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=211.95 Aligned_cols=290 Identities=11% Similarity=0.071 Sum_probs=168.3
Q ss_pred HHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhh--------HHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSW--------YTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 69 ~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~--------~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
+....+++++.|+++||+|||+++..+.+++++.+.. .+++++ ..+++.|+++|+|.|..++...++++|+
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 3334488899999999999999999999999887765 355665 3588899999999999999999999998
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
. |+|+||++.++...+...|..++.++...+..... ....|||.. |.+.++..++...+...++|+
T Consensus 153 ~----------p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~-F~i~~~~~ll~~~~~~~~~e~ 221 (432)
T PRK10406 153 A----------VEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIP-FALGAVLAVVALWLRRQLDET 221 (432)
T ss_pred C----------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH-HHHHHHHHHHHHHHHhcCCCC
Confidence 7 88999999998877777777777665443332110 013689985 444333333321111112221
Q ss_pred ccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHh
Q 016266 217 EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYG 294 (392)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~g 294 (392)
++ +++.+ .++. . +..+.+++++.+..............+....+.|.+..+..| .++.+....+..
T Consensus 222 ~~---~~~~~--~~~~----~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~ 289 (432)
T PRK10406 222 SQ---QETRA--LKEA----G---SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAAL 289 (432)
T ss_pred ch---HHHhh--hccc----c---cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 11 11000 0000 1 122345677766544332222111111112233444333233 345677777777
Q ss_pred HHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhc
Q 016266 295 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF 374 (392)
Q Consensus 295 i~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~ 374 (392)
++..++.++.|+++||++||+.++ .+.++..+....+........+ ....+....+.+++.+...+..++++.|.+
T Consensus 290 ~~~~i~~~~~G~l~Dr~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f 365 (432)
T PRK10406 290 FVFMLIQPLIGALSDKIGRRTSML-CFGSLAALFTVPILSALQNVSS---PYAAFGLVMCALLIVSFYTSISGILKAEMF 365 (432)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHH-HHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 788899999999999999987554 3333222221111111111111 122222222222233344456778899999
Q ss_pred cC-Cccccchhh
Q 016266 375 KH-DTVTANPTL 385 (392)
Q Consensus 375 p~-~~~~a~~~~ 385 (392)
|+ .|+++++.-
T Consensus 366 p~~~r~t~~g~~ 377 (432)
T PRK10406 366 PAQVRALGVGLS 377 (432)
T ss_pred CCCccchhhhHH
Confidence 86 577888753
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=208.46 Aligned_cols=344 Identities=12% Similarity=0.051 Sum_probs=204.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.|+..+.+.+++.+.+......+...+.+.+|.+.+. ...+.++..+++++++.|++.||+|||+++..+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 34555666666666655555555555555544433332 23566667788899999999999999999999999888
Q ss_pred HHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 101 LFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 101 l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
+.... .++++++.+++.|+++|++.+..++....++.++. |+++||+++|++.....+|..+|+.++..
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF----------PAYFRARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665 47889999999999999999999998888888886 77899999999999999999999998876
Q ss_pred hccCCC-CCCCCcchhHHHHHHHHHHHH-HHHHHhccCCccccc---cccccc-------c-----chh-h-hhHHHHHH
Q 016266 180 VLKDDK-GGSTSGTTLLFIVFLGVITLG-TILMCFLRKEEDKGE---KETADA-------S-----VNF-Y-SYLVSLSK 240 (392)
Q Consensus 180 ~~~~~~-~~~~~wr~~~f~i~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------~-----~~~-~-~~~~~~~~ 240 (392)
+..... .+..|||.. |.+.++..++. .+..+++||++++.+ +++.+. + ..+ . .+.+...+
T Consensus 155 l~~~~~~~~~~gwr~~-f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T TIGR02332 155 ILALDGLMALKGWQWL-FLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQR 233 (412)
T ss_pred HHhCCCCCCccchhHH-HHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Confidence 653210 123589985 55555554433 333455666543211 100000 0 000 0 00000001
Q ss_pred HHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc-cccc--chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhh
Q 016266 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP-ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI 317 (392)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~-~~g~--s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~ 317 (392)
...+.++++.++.....++........+ ..+.|.+.++ ..+. ...+......+++..+|+++.|+++||+++|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~ 312 (412)
T TIGR02332 234 SMLREIFTPAIMLYTLAYFCLTNTLSAI-NIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH 312 (412)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence 2233344566665444333222222112 2233444433 2233 3567778899999999999999999999977743
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 318 VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 318 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
.....++..+++.+ .....+. ...+....+.+++.....+...+...+.+|+ +++.+.+.++.
T Consensus 313 ~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~ 376 (412)
T TIGR02332 313 TALPYLFAAAGWLL--ASATDHN-----LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA 376 (412)
T ss_pred HHHHHHHHHHHHHH--HHhcCCH-----HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence 33334344433221 1122221 2222222233333333333344555566764 56777776653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=212.85 Aligned_cols=303 Identities=12% Similarity=0.035 Sum_probs=180.1
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHH--------HHHHHHHHhhhHHHHHhhhhHHH
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYT--------MVPASLYLGFAASIIWVGEGTYL 136 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~--------l~~~r~l~Gig~g~~~~~~~~~~ 136 (392)
++.+..+.+++++.|+++||+|||+++.++.++++++++. .+++++.. +++.|+++|+|.|+.++...+++
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~ 143 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFV 143 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHH
Confidence 5566678899999999999999999999999999887775 47788763 78899999999999999999999
Q ss_pred HHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 016266 137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFL 213 (392)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~~f~i~~~~~~~~~~~~~~~ 213 (392)
+|++ |+|+||++.++...+..+|..+|+.+...+..... ...+|||.. |++..+..+++..+...+
T Consensus 144 ~e~~----------p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~-f~i~~~~~l~~~~~~~~~ 212 (490)
T PRK10642 144 AEYS----------PDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIP-FFIALPLGIIGLYLRHAL 212 (490)
T ss_pred HHhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHH-HHHHHHHHHHHHHHHHcC
Confidence 9987 78999999999888778888888766544322111 113689985 555443333333333344
Q ss_pred cCCccccc-cccccccchh--hhhHHHHHHHHHHhhccchhHHHHH-HHHhhhHHhhhhhcccchhhhcccccc--chhh
Q 016266 214 RKEEDKGE-KETADASVNF--YSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWAEFTKEIVTPALGV--SGVG 287 (392)
Q Consensus 214 ~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~g~--s~~~ 287 (392)
+|+++..+ +++.+.+..+ .+..+..+++..+ ++++.+.... ..+...... +....+.|.+.++..+. ...+
T Consensus 213 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~l~~~~g~s~~~~~ 289 (490)
T PRK10642 213 EETPAFQQHVDKLEQGDREGLQDGPKVSFKEIAT--KHWRSLLTCIGLVIATNVTY-YMLLTYMPSYLSHNLHYSEDHGV 289 (490)
T ss_pred CCChhHHHHHHhhhhhccccccccccCCHHHHHH--HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHH
Confidence 55322110 0000000000 0000001122111 1223222221 111111111 11122344444333343 3455
Q ss_pred HHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHH
Q 016266 288 GAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLS 367 (392)
Q Consensus 288 ~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~ 367 (392)
.......++..+++++.|+++||+|||+.+ ..+.+...+....++.....+. ...+++..++.|++.+.......
T Consensus 290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~g~~~ 364 (490)
T PRK10642 290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFV-ILGSVALFVLAIPAFILINSNV----IGLIFAGLLMLAVILNCFTGVMA 364 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999999998754 3454332222111111111111 23455556667777666677788
Q ss_pred HHHHhhccCC-ccccchh-hhh
Q 016266 368 ALLGILFKHD-TVTANPT-LIR 387 (392)
Q Consensus 368 a~~~~~~p~~-~~~a~~~-~~~ 387 (392)
+++.+.+|++ |+.+.+. |+.
T Consensus 365 ~~~~~~~p~~~Rg~~~g~~~~~ 386 (490)
T PRK10642 365 STLPAMFPTHIRYSALAAAFNI 386 (490)
T ss_pred HHHHHHCCCccchHHHHHHHHH
Confidence 8889999865 4557774 443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=201.60 Aligned_cols=327 Identities=9% Similarity=0.034 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHhHHHhHhhhccCCCchhH----HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hh
Q 016266 33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL 107 (392)
Q Consensus 33 l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~----~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~ 107 (392)
+.++....|.........++.+.++.+++.. ..+.++.+|+++.++.|.++||.++|+.+..|+++.++..+. .+
T Consensus 34 ~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf 113 (448)
T COG2271 34 IFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF 113 (448)
T ss_pred HHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh
Confidence 4455555555555555555655544333322 256778899999999999999999999999999998887776 47
Q ss_pred chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhh--hhhccCCC
Q 016266 108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT--LAVLKDDK 185 (392)
Q Consensus 108 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~--~~~~~~~~ 185 (392)
.++...+.+.-+++|..+|..||++...+++|+ ++||||+..+++..+-+.|..+-+++. ..+..+
T Consensus 114 s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf----------sr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~-- 181 (448)
T COG2271 114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF----------SRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH-- 181 (448)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc----------CccccCceEEEehhhhhcccchHHHHHHHHHHHhc--
Confidence 789998888999999999999999999999987 789999999999988888877766665 333332
Q ss_pred CCCCCcchhHHHHHHHHHH-HHHHHHHhccCCcccc--------cccccc--ccchhh--hhHHHHHHHHHHhhccchhH
Q 016266 186 GGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDKG--------EKETAD--ASVNFY--SYLVSLSKSITTLLADVRML 252 (392)
Q Consensus 186 ~~~~~wr~~~f~i~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ 252 (392)
.+||.. |+..+++.+ ++++..+..||++++. ++|..+ .+++++ -+.++.+.+ .+++||..|
T Consensus 182 ---~~w~~~-f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~--YVL~Nk~iW 255 (448)
T COG2271 182 ---GGWRAA-FYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVK--YVLKNKLIW 255 (448)
T ss_pred ---cchhHH-HHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHH--HHHcChHHH
Confidence 378886 555455544 4555666778754321 111111 111111 223343332 678999999
Q ss_pred HHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHHHHhhhhhhccCC--CCchhhHHHHHHHHHHH
Q 016266 253 LIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQVVV 328 (392)
Q Consensus 253 ~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~--g~r~~~~~~g~~~~~i~ 328 (392)
.+....++.-..-.- ..++.|.|..+ +++..+++.....+-.++++|++++|++|||+ |||.+.-++..++..++
T Consensus 256 ~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~ 334 (448)
T COG2271 256 LLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITAS 334 (448)
T ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 887665433222111 13455555544 34455788899999999999999999999996 57765544444444444
Q ss_pred HHHHHhcc-ccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchh
Q 016266 329 FLWILINY-SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPT 384 (392)
Q Consensus 329 ~~~~~~~~-~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~ 384 (392)
++ ..| .|+.+ ..+..++.+..|+...+-+...-....|+.|++. ++|.+.
T Consensus 335 ~~---~~w~~~~~~---~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf 386 (448)
T COG2271 335 LV---LYWLAPNGS---YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGF 386 (448)
T ss_pred HH---HHHcCCCcc---HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhch
Confidence 32 234 33321 4667778888999888888777777888888765 446554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=206.76 Aligned_cols=296 Identities=13% Similarity=0.077 Sum_probs=174.3
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhH--------HHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
.+....+++++.|+++||+|||+++.++..++++.+.. .+++++. .+++.|+++|++.|..++....++.|
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e 152 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE 152 (438)
T ss_pred HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 33445677889999999999999999999998887765 4777765 47889999999999999998999999
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
+. |+|+||+..+....+..+|..++..+...+..... ..+++||.. |.+.++..++...+....+|
T Consensus 153 ~~----------p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~-f~~~~~~~l~~~~l~~~~~e 221 (438)
T PRK09952 153 SA----------PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIP-FLFSIVLVLIALWVRNGMEE 221 (438)
T ss_pred hC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHH-HHHHHHHHHHHHHHHHhCCC
Confidence 86 78899999998888888888887665544432211 123689875 44443332221111111222
Q ss_pred CccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccc--hhhHHHHHH
Q 016266 216 EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVY 293 (392)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s--~~~~~~~~~ 293 (392)
+++..++.+++++.+++.+.. ...+++++.+.......++.....+....+.+.+.++..+.+ ....+..+.
T Consensus 222 s~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~ 295 (438)
T PRK09952 222 SAEFEQQQHEQAAAKKRIPVI------EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLV 295 (438)
T ss_pred ChhHHHHHhhcccccccCCHH------HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111000000000000000111 123456666554332221111111111223333433334433 233444566
Q ss_pred hHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 016266 294 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373 (392)
Q Consensus 294 gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~ 373 (392)
++...++.++.|+++||+|||+.+ ..+.++..++.+.++......+. ....++..++.|++.+...+..++++.|.
T Consensus 296 g~~~~i~~~~~g~l~Dr~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~e~ 371 (438)
T PRK09952 296 GGLSCLTIPCFAWLADRFGRRRVY-ITGALIGTLSAFPFFMALEAQSI---FWIVFFSIMLANIAHDMVVCVQQPMFTEM 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999998854 34554444432221111111111 23334455667888888888899999999
Q ss_pred ccCCc-cccchh
Q 016266 374 FKHDT-VTANPT 384 (392)
Q Consensus 374 ~p~~~-~~a~~~ 384 (392)
+|++. .++.+.
T Consensus 372 ~p~~~r~tg~g~ 383 (438)
T PRK09952 372 FGASYRYSGAGV 383 (438)
T ss_pred CCcchhHHHHhH
Confidence 99744 445554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=203.02 Aligned_cols=292 Identities=12% Similarity=0.022 Sum_probs=186.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..+.....+.+++++.|+++||+|||+++..+..+.++.... ..+++++.+++.|.+.|++.+..++....++.++.
T Consensus 43 ~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 120 (377)
T TIGR00890 43 WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWF-- 120 (377)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHc--
Confidence 456666777889999999999999999999999887776654 47889999999999999999988777666666653
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCccccc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGE 221 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~ 221 (392)
+|+||+++++...+.+.|..+++.+...+.. ..+||.. |.+.+++.++..+ ..+++++++++++
T Consensus 121 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (377)
T TIGR00890 121 ---------PDKRGLASGIIIGGYGLGSFILSPLITSVIN-----LEGVPAA-FIYMGIIFLLVIVLGAFLIGYPPGQLI 185 (377)
T ss_pred ---------CcccHHHHHHHHHhcchhHhHHHHHHHHHHh-----cccHHHH-HHHHHHHHHHHHHHHHHheecCchhcc
Confidence 4689999999988888887765544443332 2468874 5555555444333 3344554433211
Q ss_pred cccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHHH
Q 016266 222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
+++.+. ++ .+ ++..+.+++++++.+....+............+.+...+.+.+.++.+.+....+++..+++
T Consensus 186 ~~~~~~---~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (377)
T TIGR00890 186 KTNIEV---SV--KD---YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGR 257 (377)
T ss_pred ccCccc---ch--hh---hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 111000 00 01 12235677888776554433222221111122222211112333456778889999999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccc
Q 016266 302 LAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVT 380 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~ 380 (392)
++.|+++||++||+.+ ..+.+...++.+.. ...++.+ ....++..++.|++.+...+..++++.|.+|+ +++.
T Consensus 258 ~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (377)
T TIGR00890 258 PFLGALSDKIGRQKTM-SIVFGISAVGMAAM--LFIPMLN---DVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAA 331 (377)
T ss_pred HHHHHHHHHHhhhhhh-hHHHHHHHHHHHHH--HHcccch---hHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhh
Confidence 9999999999988754 45555555554332 2333211 13344555677888777778888999999975 4577
Q ss_pred cchhhh
Q 016266 381 ANPTLI 386 (392)
Q Consensus 381 a~~~~~ 386 (392)
+++.++
T Consensus 332 ~~g~~~ 337 (377)
T TIGR00890 332 NYGFLY 337 (377)
T ss_pred HhHHHH
Confidence 777654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-23 Score=198.32 Aligned_cols=308 Identities=15% Similarity=0.065 Sum_probs=201.8
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHH
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASI 127 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~ 127 (392)
.++++++.+........+.......+++++.|++.||+|||+++..+..+..+.... ...++++.+++.|++.|++.+.
T Consensus 30 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 109 (385)
T TIGR00710 30 EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASA 109 (385)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhH
Confidence 344444443333333455566667788999999999999999999998877766554 3678888889999999999999
Q ss_pred HHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 016266 128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
..+...+++.|+. |+++|++++|+......+|..+|+.++..+.++ .+||.. +.+..+..++..
T Consensus 110 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~ 173 (385)
T TIGR00710 110 GSVISQALVRDIY----------PGEELSRIYSILMPVLALAPAVAPLLGGYILVW-----LSWHAI-FAFLSLAGILLS 173 (385)
T ss_pred HHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHH-HHHHHHHHHHHH
Confidence 9888888888876 778999999999999999999999888776553 368774 444444444433
Q ss_pred HHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccc
Q 016266 208 ILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVS 284 (392)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s 284 (392)
+.. +..||++++++++ +. ++..++..+.+++|+++............ .+....+.|.+..+ +.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 242 (385)
T TIGR00710 174 ALIFFILPETLPYEARI-------QI---STYFETFLLLLKSKMFWGYALIYGASFGG-FFAFFSGAPFVYIDIMGVSPS 242 (385)
T ss_pred HHHHHhCCCCCCCcccC-------CH---HHHHHHHHHHHcCchhHHHHHHHHHHHHH-HHHHHHcChHHHHHHcCCCHH
Confidence 333 3344432211110 00 11122334567888877654332211111 11112223333332 23445
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhc-cccCCCccchHHHHHHHHHHhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN-YSVTSGVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
+.+.+....+++..+++++.|+++||+++|+.+ ..+.++..++.++.... ..+... ....++..++.|++.+...
T Consensus 243 ~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 318 (385)
T TIGR00710 243 VFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL-RMGLILFAVSAVLLEITAILGLGS---WAMIIGPMMFVGIGNSMIS 318 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999999988754 34555444443322111 111111 2345556678899999889
Q ss_pred hHHHHHHHhhccCCccccchhhhh
Q 016266 364 TQLSALLGILFKHDTVTANPTLIR 387 (392)
Q Consensus 364 ~~~~a~~~~~~p~~~~~a~~~~~~ 387 (392)
+...+...|.+|++++.+.+.++.
T Consensus 319 ~~~~~~~~~~~~~~~g~~~~~~~~ 342 (385)
T TIGR00710 319 SIAMAYALEDFPHVAGTASALFGT 342 (385)
T ss_pred HHHHHHHhccCcccchHHHHHHHH
Confidence 999999999999888888887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-23 Score=196.77 Aligned_cols=295 Identities=14% Similarity=0.059 Sum_probs=194.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhch-----hhHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP-----SWYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~-----~~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
.+.......+++++.|+++||+|||+++..+..+..+.... ...+ +++.+++.|+++|++.+...+...+++.|
T Consensus 40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 119 (365)
T TIGR00900 40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPD 119 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566778899999999999999999998776554433 2334 88888999999999999999998888888
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED 218 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~ 218 (392)
+. |+++|++++|+......+|..+|+.++..+.++ .+||.. +.+..+..++..+..+.++++++
T Consensus 120 ~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 120 LV----------PEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-----LGIKWA-IWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred cC----------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHH-HHHHHHHHHHHHHHHHhcccccC
Confidence 86 778999999999999999999999988877653 368774 44444444444343344444332
Q ss_pred ccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHH
Q 016266 219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAF 296 (392)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~ 296 (392)
++++++ +.+ ++..++..+...+.++||+++......+............+.|.+.++ +.+..+.+.+....+++
T Consensus 184 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (365)
T TIGR00900 184 AASEIQ-ALS---NAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLG 259 (365)
T ss_pred CCcccc-ccc---hhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 211111 000 001111112233456788777655433322222111111223333332 23345678888899999
Q ss_pred HHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC
Q 016266 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH 376 (392)
Q Consensus 297 ~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~ 376 (392)
..+++++.|++.||.+||+. +..+..+..++... ..+.++ + .+..++..++.|++.+...+...+++.|..|+
T Consensus 260 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (365)
T TIGR00900 260 ALLGALLLGLLGRYFKRMAL-MTGAIFVIGLAILV--VGLTPP-N---FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA 332 (365)
T ss_pred HHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHH--HHhhch-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999998764 34454444444332 223332 1 35667778899999999999999999999985
Q ss_pred -Cccccchhhh
Q 016266 377 -DTVTANPTLI 386 (392)
Q Consensus 377 -~~~~a~~~~~ 386 (392)
+++.+.+.++
T Consensus 333 ~~~g~~~~~~~ 343 (365)
T TIGR00900 333 ELLGRVFGAQF 343 (365)
T ss_pred HHHHHHHHHHH
Confidence 4577777665
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=203.44 Aligned_cols=318 Identities=14% Similarity=0.087 Sum_probs=205.9
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHH
Q 016266 48 QNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAAS 126 (392)
Q Consensus 48 ~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g 126 (392)
..+.++++.+.+...+..+.+...+++++++.|+++||+|||+++..+.+++.+.... ..+++++.+++.|+++|+|.+
T Consensus 30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~ 109 (495)
T PRK14995 30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAA 109 (495)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455555555444455566666777888999999999999999999999988876654 578999999999999999999
Q ss_pred HHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHH
Q 016266 127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG 206 (392)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~ 206 (392)
...+.....+.+.. .|+++|++++|++.....+|..+|+.++..+.++ .+||+. |++...+.++.
T Consensus 110 ~~~~~~~~~l~~~~---------~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-----~gwr~~-f~i~~~~~~~~ 174 (495)
T PRK14995 110 MIVPATLAGIRATF---------TEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-----FYWGSV-FLINVPIVLVV 174 (495)
T ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CChHHH-HHHHHHHHHHH
Confidence 98887666665553 2678999999999999999999999999888764 479885 55544444444
Q ss_pred HHHH-HhccCCcccccccccccc-------------------chhhhhH-----------------HHHHH-----HHHH
Q 016266 207 TILM-CFLRKEEDKGEKETADAS-------------------VNFYSYL-----------------VSLSK-----SITT 244 (392)
Q Consensus 207 ~~~~-~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-----------------~~~~~-----~~~~ 244 (392)
.++. +++++++++++++.+... .....+. ..+.+ ...+
T Consensus 175 ~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~ 254 (495)
T PRK14995 175 MGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMR 254 (495)
T ss_pred HHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHH
Confidence 4333 444543221111100000 0000000 00000 0125
Q ss_pred hhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHH
Q 016266 245 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA 322 (392)
Q Consensus 245 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~ 322 (392)
.+|++.+.......+..+..... ...+.+.+.+. +.+..+++..+..++++..+++++.|++.||+|+|+ .+..+.
T Consensus 255 lf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~-~~~~g~ 332 (495)
T PRK14995 255 LFTHRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL-VATGGM 332 (495)
T ss_pred HhCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-HHHHHH
Confidence 56777665443332222221111 11233333332 344557899999999999999999999999999876 445677
Q ss_pred HHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhh
Q 016266 323 IAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLI 386 (392)
Q Consensus 323 ~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~ 386 (392)
++..++.+.+. ......+ .+..++..++.|++.+...+...+...+..|++ ++.+.+.++
T Consensus 333 ~~~~~~~~~l~-~~~~~~~---~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~ 393 (495)
T PRK14995 333 ALSALSFYGLA-MTDFSTQ---QWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIET 393 (495)
T ss_pred HHHHHHHHHHH-HhcCCCc---hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHH
Confidence 66666543321 1222221 244566778899999999888888888888754 566777665
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=211.46 Aligned_cols=301 Identities=11% Similarity=-0.072 Sum_probs=185.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h-----hchhhHHHHHHHHHHhhhHHHHHhhhhHHHH
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N-----LFPSWYTMVPASLYLGFAASIIWVGEGTYLT 137 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~-----~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~ 137 (392)
..+.++..+++++++.|+++||+|||+++..+.++.++.... . .+++++.+++.|+++|++.+..++...++++
T Consensus 69 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 148 (467)
T PRK09556 69 IGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTIT 148 (467)
T ss_pred HHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 355667788899999999999999999998888776654432 1 3578999999999999999999999889998
Q ss_pred HHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHH-HHHHHHhccCC
Q 016266 138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKE 216 (392)
Q Consensus 138 ~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~-~~~~~~~~~~~ 216 (392)
++. |++|||+++|++..+.++|.++|+++...+..... ..+||.. |.+.+++.++ +++..++++++
T Consensus 149 ~~~----------~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~--~~~~~~~-f~~~g~~~~~~~i~~~~~~~~~ 215 (467)
T PRK09556 149 RWT----------PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF--DGHVIGM-FIFPSIIALIIGFIGLRYGSDS 215 (467)
T ss_pred HHc----------CccceeeeEEeeecccchhhhHHHHHHHHHHHhhc--cCcchhH-HHHHHHHHHHHHHHHHHhCCCC
Confidence 887 78899999999988889999998887655443211 1247653 4444444443 33333444543
Q ss_pred ccc-c-ccccc---cc---cc----hhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccccc-
Q 016266 217 EDK-G-EKETA---DA---SV----NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV- 283 (392)
Q Consensus 217 ~~~-~-~~~~~---~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~- 283 (392)
+++ . .++++ +. +. .++.+..+.++ .+.++|++++......++....... ...+.|.+.++..|.
T Consensus 216 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s 292 (467)
T PRK09556 216 PEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFV--EYVLKNPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFS 292 (467)
T ss_pred hhhcCCCChhhcccCccchhhhccccccCcHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCC
Confidence 221 1 00000 00 00 00001111111 1367888888766543322221111 123444444333444
Q ss_pred -chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 284 -SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 284 -s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
.+++.......++.++++++.|+++||+++|+..+ .+..+..++...+.....++ ....++..++.|++....
T Consensus 293 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~G~~~~~~ 366 (467)
T PRK09556 293 KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV-ACIALALIIFTLGVYQHATS-----EYMYLASLFALGFLVFGP 366 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH-HHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHhhH
Confidence 46777888889999999999999999999887543 23222222221111111122 234455666677654444
Q ss_pred hhHHHHHHHhhccC-Cccccchhhh
Q 016266 363 NTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 363 ~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.....+...|.+|+ ++++|.+..+
T Consensus 367 ~~~~~~~~~~~~p~~~~g~a~gi~~ 391 (467)
T PRK09556 367 QLLIGVAAVGFVPKKAIGVANGIKG 391 (467)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHH
Confidence 44445677799986 4577877664
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=202.04 Aligned_cols=299 Identities=10% Similarity=-0.011 Sum_probs=189.6
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHH
Q 016266 48 QNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAAS 126 (392)
Q Consensus 48 ~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g 126 (392)
..++++++.+.+...+..+..+..+++++++.|++.||+|||+++..+..++++.... .++++++.++..|+++|+|.+
T Consensus 33 p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~ 112 (393)
T PRK09705 33 PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIG 112 (393)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHH
Confidence 3455555544444444567777788899999999999999999999999999887775 478999999999999999999
Q ss_pred HHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHH
Q 016266 127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG 206 (392)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~ 206 (392)
..++....++.++. +++|++++|.+.++...|..+|+.++..+.++. .+||.. +.++.+..++.
T Consensus 113 ~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----~~w~~~-~~~~~~~~~~~ 176 (393)
T PRK09705 113 IIQAVMPSVIKRRF-----------QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----ETWYQT-LAWWALPAVVA 176 (393)
T ss_pred HHhhhhhHHHHHHc-----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHH-HHHHHHHHHHH
Confidence 98888777776653 478999999998888889899988887765542 368875 33333333333
Q ss_pred HHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccchh
Q 016266 207 TILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV 286 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~ 286 (392)
.+..+..+++++++ ++ ++ +.+ ..+.+++++.+.+.....+............++.+.+.+.+..++
T Consensus 177 ~~~~~~~~~~~~~~-~~-~~-----~~~-------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~a 242 (393)
T PRK09705 177 LFAWWWQSAREVAS-SH-KT-----TTT-------PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYS 242 (393)
T ss_pred HHHHHHHhcCCCcc-cc-CC-----CcC-------CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Confidence 32222222221111 11 00 000 113456676665443322222211111122233333333444567
Q ss_pred hHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHH
Q 016266 287 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL 366 (392)
Q Consensus 287 ~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~ 366 (392)
+....+++++.++|+++.|++.||+++|+.+ ..+..+..++... ..+.+.. .... ...+.|++.+...+..
T Consensus 243 g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~-~~~~~l~~~~~~~--~~~~~~~----~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 243 GSLLALMTLGQAAGALLMPAMARHQDRRKLL-MLALVLQLVGFCG--FIWLPLQ----LPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHH--HHHccch----HHHH--HHHHHHHhccchHHHH
Confidence 8889999999999999999999999988754 4555555554332 1222221 1222 2345677777777777
Q ss_pred HHHHHhhccC--Cccccchhh
Q 016266 367 SALLGILFKH--DTVTANPTL 385 (392)
Q Consensus 367 ~a~~~~~~p~--~~~~a~~~~ 385 (392)
.+...+.+++ +++.+++..
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~ 334 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFM 334 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 7777787753 345566543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=198.84 Aligned_cols=280 Identities=11% Similarity=0.053 Sum_probs=186.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+.......+++++.|++.||+|||+++..+.++..+.... ...++++.+++.|+++|++.+..++...+++.++.
T Consensus 61 ~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~--- 137 (394)
T PRK10213 61 VTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV--- 137 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc---
Confidence 44555566788999999999999999999999988776554 46789999999999999999999998888888886
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH-hccCCcccccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC-FLRKEEDKGEK 222 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~-~~~~~~~~~~~ 222 (392)
|+|+|++++++.....+.|..+|+.++..+.+. .+||.. |.+.+++.++..+... ..|+++ +++
T Consensus 138 -------~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-----~gw~~~-f~~~~~l~~~~~l~~~~~~p~~~--~~~ 202 (394)
T PRK10213 138 -------PPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-----IGWRNV-FNAAAVMGVLCIFWIIKSLPSLP--GEP 202 (394)
T ss_pred -------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCHHHH-HHHHHHHHHHHHHHHHHHCCCCC--ccc
Confidence 788999999999999999999999998877653 479875 4444443333222211 122211 110
Q ss_pred ccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc-cccccchhhHHHHHHhHHHHHHH
Q 016266 223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
+ . + .+ +..+.+++|+++......+............+.|.+.+ .+++.+..+.+...++++..+++
T Consensus 203 ~-----~-~----~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~ 269 (394)
T PRK10213 203 S-----H-Q----KQ---NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGT 269 (394)
T ss_pred c-----c-c----hh---HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 0 0 0 01 12356778887764433221111111111223344432 23444567888899999999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCcccc
Q 016266 302 LAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTA 381 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a 381 (392)
++.|++.||.+ |+.++ .+..+..++... +..+.++ .+...+..+++|++.+..++..++.+.+..|++.+.+
T Consensus 270 ~~~~~l~~r~~-~~~l~-~~~~~~~~~~~~-l~~~~~~-----~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
T PRK10213 270 SLSSFILKRSV-KLALA-GAPLVLAVSALV-LTLWGSD-----KIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKA 341 (394)
T ss_pred HHHHHHHhccc-hhHHH-HHHHHHHHHHHH-HHHHhhh-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHH
Confidence 99999999954 43333 333332222111 1223332 3566677888999999999999999999888765555
Q ss_pred ch
Q 016266 382 NP 383 (392)
Q Consensus 382 ~~ 383 (392)
.+
T Consensus 342 ~~ 343 (394)
T PRK10213 342 GS 343 (394)
T ss_pred HH
Confidence 44
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=197.66 Aligned_cols=332 Identities=13% Similarity=0.086 Sum_probs=193.4
Q ss_pred cchhHHHHHHHHHHHHHHHHh----HHHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHH
Q 016266 26 YTRDVHILSCAFLLIFLAYGA----AQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL 101 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~----~~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l 101 (392)
.++++....++.++....... ...+.++++.+++.-....+.+...+.+++++.|++.||+|||+++..+..++++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV 90 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 446666655565554444322 2223333333322222234555556678899999999999999999999988776
Q ss_pred HHHhh----h-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhh-hhhhH
Q 016266 102 FVAAN----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGNL 175 (392)
Q Consensus 102 ~~~~~----~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~-~~G~~ 175 (392)
..... . .+++..++..|+++|+|.+...+....++.++. |+++||+++|+..++.+.|. .+|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~~g~~~~g~~ 160 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT----------KQDNLSSAVGWFWAVYSIGIGVFGSY 160 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54321 2 357888888999999999887776666666654 78899999999998888886 57877
Q ss_pred hhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHH
Q 016266 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI 254 (392)
Q Consensus 176 i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 254 (392)
++..+.+. .||+.. ++.......++.++. ++.++++++++++ ++ .+ .++..++..+.+|||+++..
T Consensus 161 ~~~~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~~~~~~~~~~~~~ 227 (402)
T TIGR00897 161 YSSYAIPA-----FGEMNT-LWSALAFVLTGGVIALFSNKDIFTPQHMQ-TR---EK---FSELGKAATILFTNPNVLLG 227 (402)
T ss_pred HHHhcccc-----cchHHH-HHHHHHHHHHHHHHHHhccCCCCCccccc-CC---cc---hhhHHHHHHHHHcChhHHHH
Confidence 76655432 344332 122222222222222 3344432211111 00 01 11111223356788888765
Q ss_pred HHHHHhhhHHhhhhhcccchhhhcc-ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHH
Q 016266 255 IPLFAYSGLQQAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL 333 (392)
Q Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~ 333 (392)
....+...... +....+.|.+.++ +.+.++.+.+....+++..+++++.|+++||++||+.....+.+...++.+.+.
T Consensus 228 ~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~ 306 (402)
T TIGR00897 228 GMVRIINTIGL-FGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALY 306 (402)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 54332221111 1112233444322 233446677778889999999999999999999887543233332322211111
Q ss_pred h-c-cccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhh
Q 016266 334 I-N-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 334 ~-~-~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
. . ...++ .+..++..+++|++.+...+ ..+.+.+..|++++.+.+.++
T Consensus 307 ~~~~~~~~~----~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~ 356 (402)
T TIGR00897 307 YIPQHFGHS----FAVALIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLN 356 (402)
T ss_pred HHHHccCCc----HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHH
Confidence 1 1 11111 34556677888888877654 466778888888888988765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=200.80 Aligned_cols=345 Identities=12% Similarity=0.062 Sum_probs=207.3
Q ss_pred cccccCccccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCch----hHHHHHHHHHHhhhhhhHHHHHHhhchhHHH
Q 016266 17 SLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNAL 92 (392)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l 92 (392)
+|.+-+.++...-+..+.+.++..-........+.+.+.++.+.+ ....+.+...+.+++++.|++.||+|||+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l 94 (438)
T PRK10133 15 DKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 333333333444445555554444333333444444443333332 2334566667788999999999999999999
Q ss_pred HHhhhHHHHHHHh----hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH
Q 016266 93 ILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS 168 (392)
Q Consensus 93 ~~g~~~~~l~~~~----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~ 168 (392)
..+..++.+.... ..++++..++++|+++|+|.|..++....++.++. |+++|++.+++++...++
T Consensus 95 ~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~----------~~~~~~~~~s~~~~~~~~ 164 (438)
T PRK10133 95 ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSF 164 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------ChhhHHHHHHHHHHHHHH
Confidence 9999988876643 25789999999999999999999999888888764 566777788999999999
Q ss_pred hhhhhhHhhhhhc-cCCC------------CCC--------CCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccc
Q 016266 169 HQFVGNLITLAVL-KDDK------------GGS--------TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADA 227 (392)
Q Consensus 169 g~~~G~~i~~~~~-~~~~------------~~~--------~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (392)
|..+|+.++..+. .... ... .+||..++.+..+..++. ++..+.+.|+.+.+++ .+
T Consensus 165 G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~-~~~~~~~~p~~~~~~~-~~- 241 (438)
T PRK10133 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA-LLIMLTKFPALQSDNH-SD- 241 (438)
T ss_pred HHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCcccc-cc-
Confidence 9999998876543 1100 000 134432111222222221 1222222222111111 00
Q ss_pred cchhhhhHHHHHHHHHHhhccchhHHHHHHH-HhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHHHHhhh
Q 016266 228 SVNFYSYLVSLSKSITTLLADVRMLLIIPLF-AYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICSLAA 304 (392)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~g~~~~ 304 (392)
++..+.. ++..+.+++|+++...... .+.+.+.... ...++.+.++ +.+.+..++.+..+.++..+|+++.
T Consensus 242 --~~~~~~~---~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~ 315 (438)
T PRK10133 242 --AKQGSFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACW-SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTG 315 (438)
T ss_pred --ccccchh---hhHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 2223567888876543322 2222222211 2222222233 3444578889999999999999999
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchh
Q 016266 305 GRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPT 384 (392)
Q Consensus 305 G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~ 384 (392)
|++.||+++|+.+ ..+.++..+.+.+ ..+.++ ...+....++|++.+...|..++...+.+|++.+.+.+.
T Consensus 316 g~l~~r~g~~~~l-~~~~~~~~~~~~~--~~~~~~------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l 386 (438)
T PRK10133 316 TWLISRFAPHKVL-AAYALIAMALCLI--SAFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSF 386 (438)
T ss_pred HHHHHHcCHHHHH-HHHHHHHHHHHHH--HHHcCC------hHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhH
Confidence 9999999988754 4455444443322 223333 123455678999999999999999999999877777776
Q ss_pred hhhhh
Q 016266 385 LIRQI 389 (392)
Q Consensus 385 ~~~~~ 389 (392)
...|.
T Consensus 387 ~~~~~ 391 (438)
T PRK10133 387 IVMTI 391 (438)
T ss_pred HhHHh
Confidence 66554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=196.48 Aligned_cols=321 Identities=13% Similarity=0.083 Sum_probs=192.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhcc-CCCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
..+++++...+++...|......+.+...+.. +.+++. ...++....+++++++.|++.||+|+|+++.++.++.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34578888888888888888777665555433 333332 2345566677888899999999999999999999887
Q ss_pred HHHHHh-hhc-----hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhh
Q 016266 100 WLFVAA-NLF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 173 (392)
Q Consensus 100 ~l~~~~-~~~-----~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G 173 (392)
++.+.. .++ +++..+++.|++.|++ +..+++....+++++ |++|||+++|+.....+.|..++
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf----------p~~~rG~A~Gi~~g~G~~G~~l~ 179 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF----------PKAKQGSALGINGGLGNLGVSVM 179 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC----------CHhHhHHHHHHHHHHHhhHHHHH
Confidence 776654 233 7899999999999998 668888888888886 78899999999876666776665
Q ss_pred hHhhhhhc-----cCCC--------CCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHH
Q 016266 174 NLITLAVL-----KDDK--------GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240 (392)
Q Consensus 174 ~~i~~~~~-----~~~~--------~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392)
+++...+. .... .+..+||.. +++..++.++..++.++..+++++. + .+ .+
T Consensus 180 ~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~-~~~~~~~~iv~~i~~~~~~~~~~~~-~----------~~----~~ 243 (462)
T PRK15034 180 QLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANA-AWIWVPLLAIATIAAWSGMNDIASS-R----------AS----IA 243 (462)
T ss_pred HHHHHHHHHHHHHHHhccccccccccchHHHHHH-HHHHHHHHHHHHHHHHHhCCCcccc-c----------cC----HH
Confidence 55443322 1110 012346654 4444555455444444443322211 0 11 13
Q ss_pred HHHHhhccchhHHHHHHHHhh-hHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHH
Q 016266 241 SITTLLADVRMLLIIPLFAYS-GLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVS 319 (392)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~ 319 (392)
+..+.+|+|+.|.+...++.. |...++ +.+.|.+.++.++.........+..+...++++++|+++||+|+||.. .
T Consensus 244 ~~~~vlk~~~~Wllslly~~tFG~fvg~--s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl-~ 320 (462)
T PRK15034 244 DQLPVLQRLHLWLLSLLYLATFGSFIGF--SAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT-L 320 (462)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH-H
Confidence 344688999999877654321 111112 223333333333222222223344567888999999999999998754 4
Q ss_pred HHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC
Q 016266 320 GGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH 376 (392)
Q Consensus 320 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~ 376 (392)
++.+...++...++...+.+. ....+...+......++.|.-+...+.++.+.||+
T Consensus 321 ~~~i~~~i~~~~~~l~lp~~~-~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 321 INFIFMAIFSALLFLTLPGTG-SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence 555545444322222222211 11123333333333344444444567778888874
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=200.51 Aligned_cols=353 Identities=11% Similarity=0.021 Sum_probs=201.5
Q ss_pred cCccccccccccCccccchhHH--HHHHHHHHHHHHHHhHHHhHhhhccCCCchh----HHHHHHHHHHhhhhhhHHHHH
Q 016266 10 EAPLVADSLQVLTPKNYTRDVH--ILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVV 83 (392)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~v~~~~~g~l~ 83 (392)
++|+..|-+......++++..+ .+.++.++.+......+...+.+.++.+.+. ...+.....+.+++++.|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~ 82 (434)
T PRK11663 3 DAPLITDKHEIDARYRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVS 82 (434)
T ss_pred CCCCCCCHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4677777664444433333322 2233333333322233333344433333332 224455556778899999999
Q ss_pred HhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHH
Q 016266 84 RVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF 162 (392)
Q Consensus 84 dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~ 162 (392)
||+|||+++.++.++.++.... ..+++++.++..|++.|++.|..++...+++.+++ |+++||+++|++
T Consensus 83 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~----------~~~~rg~~~~~~ 152 (434)
T PRK11663 83 DRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY----------SRTERGGWWAIW 152 (434)
T ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC----------CHHHHHHHHHHH
Confidence 9999999999999888776654 46788998899999999999988888888888886 778999999999
Q ss_pred HHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHH-HHHHHhccCCcccc--cc----ccccccc-h----
Q 016266 163 WGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG-TILMCFLRKEEDKG--EK----ETADASV-N---- 230 (392)
Q Consensus 163 ~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~-~~~~~~~~~~~~~~--~~----~~~~~~~-~---- 230 (392)
..+..+|..+|+.+...+.+. .+||.. |.+.+++.++. ++..+.++|+++.. ++ ++++.+. .
T Consensus 153 ~~~~~~g~~~~~~~~~~l~~~-----~gw~~~-f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 226 (434)
T PRK11663 153 NTAHNVGGALIPLVVGAIALH-----YGWRYG-MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEG 226 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-----ccHHHH-HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccc
Confidence 999999999998887766543 479875 44444443332 23334556543211 00 0000000 0
Q ss_pred hhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccc--cccchhhHHHHHHhHHHHHHHhhhhhhc
Q 016266 231 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA--LGVSGVGGAMAVYGAFDAICSLAAGRLT 308 (392)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~gi~~~~g~~~~G~ls 308 (392)
++.+.++.++ .+.++|++++......+......... ..+.|.+..+. .+..+.+.....++++..+++++.|+++
T Consensus 227 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~ 303 (434)
T PRK11663 227 AGLSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAI-NDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGS 303 (434)
T ss_pred cCCChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0011111111 12567888776554333222211111 12333343333 3344677788899999999999999999
Q ss_pred cCC--CCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhh
Q 016266 309 TGL--PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTL 385 (392)
Q Consensus 309 d~~--g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~ 385 (392)
||+ ++|+.......+...+..... ....... .....+..+.+|++.....+.....+.|.+|+ +++.+.+.+
T Consensus 304 dr~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 378 (434)
T PRK11663 304 DKLFNGNRGPMNLIFAAGILLSVGSL-WLMPFAS----YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFV 378 (434)
T ss_pred HHhccCCccHHHHHHHHHHHHHHHHH-HHccccc----HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHH
Confidence 998 333332222111111111111 1122211 12333333445554333333445667888864 667777766
Q ss_pred h
Q 016266 386 I 386 (392)
Q Consensus 386 ~ 386 (392)
+
T Consensus 379 ~ 379 (434)
T PRK11663 379 G 379 (434)
T ss_pred H
Confidence 4
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=197.53 Aligned_cols=291 Identities=14% Similarity=0.041 Sum_probs=184.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+.......+++++.|++.||+|||+++..+.++..+.... ...++++.+++.|++.|++.+...+....++.|+.
T Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~--- 132 (406)
T PRK11551 56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV--- 132 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc---
Confidence 44455566778899999999999999999998877665544 46788998899999999999999888888888886
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCcccccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEK 222 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (392)
|+|+|+++++++......|..+++.++..+.+. .+||.. |.+..++.++..+ ...+++|+++..++
T Consensus 133 -------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (406)
T PRK11551 133 -------GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-----AAWRHI-FYVGGVGPLLLVPLLMRWLPESRAFAQA 199 (406)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----cCHHHH-HHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence 778999999999988899998888877655432 468774 4454444343333 23445654332111
Q ss_pred ccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhh-ccccccchhhHHHHHHhHHHHHHH
Q 016266 223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
+..+ .++++..+ ...+..++++.+.+....+......... ..+.|.+. +.+.+..+.+......+++.++++
T Consensus 200 ~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~ 272 (406)
T PRK11551 200 AGAG---KQRAPVLR---ALFGEGRATATLLLWISYFFTLIVLYFL-LNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGS 272 (406)
T ss_pred cCcc---hhhhhhHH---HHhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHH
Confidence 1000 00111111 1111111122222222111111111111 12223333 233444567888899999999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccc
Q 016266 302 LAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVT 380 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~ 380 (392)
++.|+++||+|+|+.+ ..+.+...++++. +...++ .+...+..++.|++.+..++..+++..|.+|+ +++.
T Consensus 273 ~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~ 344 (406)
T PRK11551 273 LLIGALMDRLRPRRVV-LLIYAGILASLAA--LAAAPS-----FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGT 344 (406)
T ss_pred HHHHHHHHHHhHHHHH-HHHHHHHHHHHHH--HHhcCc-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhh
Confidence 9999999999988744 3444444444322 223332 24556677788888888889999999999985 4566
Q ss_pred cchhhh
Q 016266 381 ANPTLI 386 (392)
Q Consensus 381 a~~~~~ 386 (392)
+.+.++
T Consensus 345 ~~g~~~ 350 (406)
T PRK11551 345 GVGAAV 350 (406)
T ss_pred hhhHHH
Confidence 777654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=205.49 Aligned_cols=297 Identities=13% Similarity=0.080 Sum_probs=171.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+.....+.+++++.|+++||+|||+++..+.+++++.... ..++++..+++.|+++|++.+... ....+++++.
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~--- 152 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMF--- 152 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhc---
Confidence 34455566788899999999999999999988887776654 467888888889999999987643 3345566665
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc----CCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc-CCcc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK----DDKGGSTSGTTLLFIVFLGVITLGTILMCFLR-KEED 218 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~----~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~-~~~~ 218 (392)
|+++||+++|+.....+.|..+|+.+...+.. .......+||.. |.+.+++.++..+..++++ ++++
T Consensus 153 -------~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~-f~i~g~l~l~~~l~~~~~~~~~p~ 224 (476)
T PLN00028 153 -------NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA-FFVPGLLHIIMGILVLTLGQDLPD 224 (476)
T ss_pred -------ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH-HHHHHHHHHHHHHHHHHHcCcCCC
Confidence 78899999999876666777776655433321 101112479885 5555555554333333333 3221
Q ss_pred ccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhh-hHHhhhhhcccchhhhcc--ccccchhhHHHHHHhH
Q 016266 219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGA 295 (392)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi 295 (392)
...++..+....++.+.. +...+.++++++|.+...+... +....+ ..+.|.+..+ +++.+.++.+..++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~l~~~~g~s~~~a~~~~~~~~~ 299 (476)
T PLN00028 225 GNYRELKKSGTMPKDSFS---KVLRYGVTNYRTWILALTYGYSFGVELTM--DNIIAEYFYDRFGLSLETAGAIAASFGL 299 (476)
T ss_pred CchhhHHhcCccccccHH---HHHHHHHcCchhHHHHHHHHHHHHHHHHH--HhHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111110000000111111 2233567888887665443221 111111 1222333322 3344567888899999
Q ss_pred HHHHHHhhhhhhccCCCCch------hhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHH
Q 016266 296 FDAICSLAAGRLTTGLPSIT------FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL 369 (392)
Q Consensus 296 ~~~~g~~~~G~lsd~~g~r~------~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~ 369 (392)
++.++++++|+++||++||+ ....+..++..++.. .+....+ .....+..++++++.+...+...++
T Consensus 300 ~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~--~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~ 372 (476)
T PLN00028 300 MNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI--WLGRANS-----LGAAIVVMILFSIFVQAACGATFGI 372 (476)
T ss_pred HHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH--Hhcccch-----HHHHHHHHHHHHHHHHHhhhhhccc
Confidence 99999999999999998652 121122222222211 1222222 2333344455555554445555666
Q ss_pred HHhhccCCccccchhh
Q 016266 370 LGILFKHDTVTANPTL 385 (392)
Q Consensus 370 ~~~~~p~~~~~a~~~~ 385 (392)
..+..|++++.+.+..
T Consensus 373 ~~~~~~~~~g~~~g~~ 388 (476)
T PLN00028 373 VPFVSRRSLGVISGLT 388 (476)
T ss_pred CcccChhhchhhhhhh
Confidence 6777777777777654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=195.39 Aligned_cols=340 Identities=11% Similarity=0.073 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhH-----hhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH
Q 016266 30 VHILSCAFLLIFLAYGAAQNLE-----TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA 104 (392)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~l~-----~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~ 104 (392)
.+...++++..+..+.....+. +.++.+........+.....+.+++++.|+++||+|||+++.++.++..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3445555565555554444333 33443333323334556667788899999999999999999999988877665
Q ss_pred h-hhch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 105 A-NLFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 105 ~-~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
. ...+ +++.+++.|+++|++.+. ++....+++++. |+++|++++++.....+.|..+|+.++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFF----------PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhc----------CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4 3567 888889999999999664 455567777775 77899999999887777777777766654433
Q ss_pred CC-----CCCCCCcchhHHHHHHHHHHH-HHHHHHhccCCccccccccccccch-hhhhHHHHHHHHHHhhccchhHHHH
Q 016266 183 DD-----KGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKGEKETADASVN-FYSYLVSLSKSITTLLADVRMLLII 255 (392)
Q Consensus 183 ~~-----~~~~~~wr~~~f~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (392)
.. +....+||+..++...++..+ ..+...+.++.++++++++...... +....++..++..+.+++++++...
T Consensus 152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T TIGR00886 152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILA 231 (366)
T ss_pred HHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHH
Confidence 11 011347887532433333332 2233334444322111111000000 0000011112344677888877655
Q ss_pred HHHHhh-hHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHH
Q 016266 256 PLFAYS-GLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI 332 (392)
Q Consensus 256 ~~~~~~-g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~ 332 (392)
...... +....+ ..+.+.+.++..+ ..+.+....+.+++.++++++.|+++||+|+|+... .+..+...+..++
T Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-~~~~~~~~~~~~~ 308 (366)
T TIGR00886 232 LLYSVTFGSFLGV--SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL-MSFLGVAMGAFLV 308 (366)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH-HHHHHHHHHHHHH
Confidence 433221 111111 1222333333334 446777888889999999999999999999876443 4444444433322
Q ss_pred HhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhh
Q 016266 333 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 333 ~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
.....++.+ .+..++...+.++..+...+..++...++.|++++.+.+.++
T Consensus 309 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~ 359 (366)
T TIGR00886 309 VLGLVSPLS---LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVG 359 (366)
T ss_pred HhcCCCcch---HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHH
Confidence 222222101 233333334444444555556778888889988888888654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=199.68 Aligned_cols=310 Identities=10% Similarity=0.056 Sum_probs=181.5
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHH
Q 016266 50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASII 128 (392)
Q Consensus 50 l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~ 128 (392)
++++++.++.......+.....+.+++++.|+++||+|||+++.++.+..++.... .++++++.+++.|+++|++.+..
T Consensus 44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~ 123 (426)
T PRK12307 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGE 123 (426)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Confidence 33444433333333455666677788999999999999999999999888776654 46788999999999999999999
Q ss_pred HhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016266 129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI 208 (392)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~ 208 (392)
++....++.++. |+|+|++++++...+..+|..+++.+...+.+. .+||.. |.+.... .+
T Consensus 124 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-----~~w~~~-f~i~~~~----~~ 183 (426)
T PRK12307 124 YACASTYAVESW----------PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-----YGWRAA-FFVGLLP----VL 183 (426)
T ss_pred HHHHHHHHHHhC----------CHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-----CCHHHH-HHHHHHH----HH
Confidence 888888888886 788999999999988888888888776655432 479875 3332221 11
Q ss_pred HHHhccC--Cccccc--cccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHh-hh-HHhhh-hhcccchhhhcccc
Q 016266 209 LMCFLRK--EEDKGE--KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAY-SG-LQQAF-VWAEFTKEIVTPAL 281 (392)
Q Consensus 209 ~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-~~~~~-~~~~~~~~~~~~~~ 281 (392)
+.+++++ +++++. ++.++.+..++...++...+..+.+++++++.....+.. .. ....+ ....+++...+.+.
T Consensus 184 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 263 (426)
T PRK12307 184 LVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGF 263 (426)
T ss_pred HHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1222221 111110 000000000001111111123355677766543322111 11 11111 11222222222233
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhh
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 361 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~ 361 (392)
+....+......+++.++++++.|+++||++||+. +..+.++..+..+.. ...+... .....+..+..+++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~ 337 (426)
T PRK12307 264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-FSIGLLMSFLFIFPL--FRIPQDN---YLLLGACLFGLMATNVG 337 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHH--HHHcccc---HHHHHHHHHHHHHhccc
Confidence 34466777888999999999999999999998874 445554444433221 2222211 11222222223333334
Q ss_pred hhhHHHHHHHhhccCC-ccccchhh
Q 016266 362 LNTQLSALLGILFKHD-TVTANPTL 385 (392)
Q Consensus 362 ~~~~~~a~~~~~~p~~-~~~a~~~~ 385 (392)
..+..++++.|.+|++ ++.+++..
T Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~ 362 (426)
T PRK12307 338 VGGLVPKFLYDYFPLEVRGLGTGLI 362 (426)
T ss_pred HhHHHHHHHHHhCcHHHHhhhhhHH
Confidence 4566778889999864 56677754
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=194.51 Aligned_cols=340 Identities=13% Similarity=0.040 Sum_probs=199.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccC----CCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE----GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.++.+..+.++.+...........+.+.+..+ ........+.......+++++.|.++||+|||+++.++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555566665555544444444444333 2222333455666778889999999999999999999988877
Q ss_pred HHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 101 LFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 101 l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
+.... .+.++++.+++.|++.|++.+..++....++.|+. |+++|++++|+...+...|..+|+.+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----------PKHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 46789999999999999999999998888888886 77899999999999999999999988877
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccch--------hhhhHHHHHHH----HHHhhc
Q 016266 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVN--------FYSYLVSLSKS----ITTLLA 247 (392)
Q Consensus 180 ~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~ 247 (392)
+....+ .+||.. +.+..+..++..+....++|+++..++++.+.+.. +++..++..++ ..+..+
T Consensus 159 l~~~~~---~~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (405)
T TIGR00891 159 VVPVWG---DGWRAL-FFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG 234 (405)
T ss_pred HHHhcC---ccHHHH-HHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhh
Confidence 665331 358874 44433333333222233444322111000000000 00000000000 001111
Q ss_pred cch--hHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHH
Q 016266 248 DVR--MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI 323 (392)
Q Consensus 248 ~~~--~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~ 323 (392)
.++ +..+.......+...... ..+.+.+..+..| ..+.+.+....+++..+++++.|+++||++||+.+ .++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~ 312 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPI-QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY-VCSLL 312 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh-HHHHH
Confidence 111 111111111111111111 1222333322233 45678888899999999999999999999998754 34444
Q ss_pred HHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhh
Q 016266 324 AQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 324 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
...+..... ....++ .+...+..++.|++.+...+..++++.|.+|+ +++.+++.++
T Consensus 313 ~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 370 (405)
T TIGR00891 313 AGQLLIIPV-FAIGAN-----VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTY 370 (405)
T ss_pred HHHHHHHHH-HHhCCc-----hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHH
Confidence 332221111 112222 23444454666777677777888999999985 4577777654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=193.09 Aligned_cols=302 Identities=9% Similarity=0.030 Sum_probs=179.9
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hchhhHHHHHHHHHHhhhHH
Q 016266 48 QNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAAS 126 (392)
Q Consensus 48 ~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~~~~~~l~~~r~l~Gig~g 126 (392)
..++++++.+.+.-....+.++..+.+++++.|+++||+|||+++..+........... ..+++..+++.|+++|+|.+
T Consensus 15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~ 94 (368)
T TIGR00903 15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQP 94 (368)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhH
Confidence 35555555443332234666777888999999999999999988765544443333222 33689999999999999998
Q ss_pred HHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHH
Q 016266 127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG 206 (392)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~ 206 (392)
.. .......+++. |+|||++++++...+..+|..++++++..+.++ .+||.. |.+.+++.++.
T Consensus 95 ~~-~~~~~~~~~~~----------~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----~gWr~~-f~~~~~l~~~~ 157 (368)
T TIGR00903 95 FL-LNAFAPAASQI----------REERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----GGLQLL-IIPIAAVAAAG 157 (368)
T ss_pred HH-HHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHH-HHHHHHHHHHH
Confidence 64 44445556665 789999999999999999999999888877653 479985 55545555443
Q ss_pred HH-HHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccc-
Q 016266 207 TI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS- 284 (392)
Q Consensus 207 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s- 284 (392)
.+ ..+++||+++.+++. . +.+ +..++..+.++||+++.+....++.......+ ..+.|.+.++ .+.+
T Consensus 158 ~~~~~~~lp~~p~~~~~~---~---~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~L~~-~g~s~ 226 (368)
T TIGR00903 158 IILVLAALPALPFQAAEG---F---GFK---DAVKEFGALAGRKDLWIIGAILGFGVALFDNL-AIWLEAALRP-AGLED 226 (368)
T ss_pred HHHHHHHcCCCCCCCCCC---c---chH---HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-CCCCh
Confidence 33 335566643322111 0 001 11123446788998887765443322221122 2233444432 2332
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCc---hhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSI---TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 361 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r---~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~ 361 (392)
..+....+..++..++ .++++||.+|| +.......++.++.... ..+..+ .....+...+.|++...
T Consensus 227 ~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~--~~~~~~-----~~~~~~~~~l~~~~~~~ 296 (368)
T TIGR00903 227 IAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLA--LAFELN-----RLALFAFIGIAGLLMLP 296 (368)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH--HHHccc-----cHHHHHHHHHHHHhhhh
Confidence 2444445555545554 47777776543 32222223333333221 222222 13334445556666666
Q ss_pred hhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 362 LNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 362 ~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
..+..+++..|.+|+ .++++.+..+.
T Consensus 297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~ 323 (368)
T TIGR00903 297 AYAIIMDWIGKFCDKELHGKAAGAIGF 323 (368)
T ss_pred hHHHHHHHHHHhcchhhcCcccchhhH
Confidence 667788999999986 66888887653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=197.18 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=168.5
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhH--------HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+++++.|++.||+|||++++.+..++++.... .+++++. .+++.|+++|++.+..++....+++|+.
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~--- 146 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA--- 146 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC---
Confidence 467899999999999999999999988877665 4667765 4688999999999999988888998886
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG 220 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
|+|+||+++++.....+.|..+|+.++..+..... ....|||.. |.+... . .+..+++++..++.
T Consensus 147 -------p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~-f~~~~~---~-~~~~~~~~~~~~e~ 214 (434)
T PRK15075 147 -------TPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIP-FLIGCL---I-VPFIFLIRRSLEET 214 (434)
T ss_pred -------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH-HHHHHH---H-HHHHHHHHHhcCCC
Confidence 88999999999888777777777776655432211 124689875 333211 1 12222333322211
Q ss_pred ccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHH
Q 016266 221 EKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDA 298 (392)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~ 298 (392)
++...+ .++.+.++..+ +..++++.+..............+....+.|.+.++ +.+..+.++...++++++.
T Consensus 215 ~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~ 288 (434)
T PRK15075 215 EEFLAR---KHRPSMREIFR---SLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNF 288 (434)
T ss_pred HHHHHh---hhccccccHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 110000 00011111111 223444444332221111111111112344554433 3333456777788899999
Q ss_pred HHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-C
Q 016266 299 ICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-D 377 (392)
Q Consensus 299 ~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~ 377 (392)
+++++.|+++||+|||+..+ .+..+..+.....+.....+++ .....+...+.|++.+...+..+++..|.+|+ .
T Consensus 289 ~~~~~~g~l~Dr~g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~ 364 (434)
T PRK15075 289 IWLPIGGALSDRIGRRPVLI-AFTVLAILTAYPALSWLVAAPS---FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV 364 (434)
T ss_pred HHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc
Confidence 99999999999999988544 3333222211111111112211 12233334455666677777777889999986 4
Q ss_pred ccccchh
Q 016266 378 TVTANPT 384 (392)
Q Consensus 378 ~~~a~~~ 384 (392)
++.+++.
T Consensus 365 rg~~~g~ 371 (434)
T PRK15075 365 RTAGFSL 371 (434)
T ss_pred cchheeH
Confidence 5667765
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=198.95 Aligned_cols=316 Identities=11% Similarity=0.074 Sum_probs=202.4
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHH
Q 016266 50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASII 128 (392)
Q Consensus 50 l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~ 128 (392)
+.++++.+.+...+..+.......++.++.|++.||+|||+++.++.+++.+.... ..++++..+++.|+++|++.+..
T Consensus 28 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 107 (485)
T TIGR00711 28 IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPL 107 (485)
T ss_pred HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhH
Confidence 33444433333334455666677788899999999999999999999888876664 46789999999999999999999
Q ss_pred HhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016266 129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI 208 (392)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~ 208 (392)
.+...+++.++. |+++||++++++......|..+|+.++..+.++ .+||+. |++...+.++..+
T Consensus 108 ~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~w~~~-f~~~~~~~~~~~~ 171 (485)
T TIGR00711 108 IPLSFSTLLNIY----------PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-----YHWRWI-FLINVPIGIIVVV 171 (485)
T ss_pred HHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-----cCceeh-hhhhhHHHHHHHH
Confidence 998889988886 788999999999999999999999888776543 468875 5454444444433
Q ss_pred HH-HhccCCccccccccc-------------------cccc-h--hhhhHH---------------HHHH-----HHHHh
Q 016266 209 LM-CFLRKEEDKGEKETA-------------------DASV-N--FYSYLV---------------SLSK-----SITTL 245 (392)
Q Consensus 209 ~~-~~~~~~~~~~~~~~~-------------------~~~~-~--~~~~~~---------------~~~~-----~~~~~ 245 (392)
+. +.+++++++++++.+ +.+. . +.+... .+.+ ...+.
T Consensus 172 ~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (485)
T TIGR00711 172 VAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRL 251 (485)
T ss_pred HHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHH
Confidence 33 344443221111100 0000 0 000000 0000 01245
Q ss_pred hccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHH
Q 016266 246 LADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI 323 (392)
Q Consensus 246 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~ 323 (392)
+++++++......+..+... +....+.|.+.++..| ..+.+......+++..+++++.|++.||++||+. +..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~g~~ 329 (485)
T TIGR00711 252 FKYRNFTIGCVYMSLLGLGL-YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL-VTIGLI 329 (485)
T ss_pred HcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHHHH
Confidence 67777765543332222211 1111233444433333 4578888899999999999999999999998874 456666
Q ss_pred HHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhcc-CCccccchhhh
Q 016266 324 AQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK-HDTVTANPTLI 386 (392)
Q Consensus 324 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p-~~~~~a~~~~~ 386 (392)
+..++..+......++.+ .+......++.|++.+...+.......+..| ++++.+.+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 390 (485)
T TIGR00711 330 LYAVGFYWRAFTFTPDTP---FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSN 390 (485)
T ss_pred HHHHHHHHHhccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHH
Confidence 666654432112223322 3445566778999998888777787778787 45567777654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=195.00 Aligned_cols=300 Identities=18% Similarity=0.192 Sum_probs=189.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 63 ~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
+..+.......+++++.|+++||+|||+++.++.++.++.... .++++.+.+++.|++.|++.+..++...+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~- 114 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWF- 114 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccc-
Confidence 3455566667788999999999999999999999888777333 34466668899999999999999999999988886
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcccc
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKG 220 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~ 220 (392)
|+++|++++++.....++|..+|+.++..+.+. .+||.. |++.+++.++..++. ++++++++++
T Consensus 115 ---------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~~~~~~-~~~~~~~~~~~~il~~~~~~~~~~~~ 179 (352)
T PF07690_consen 115 ---------PPEERGRAFGILSAGFSLGSILGPLLGGFLISY-----FGWRWA-FLISAILSLIAAILFILFLPEPPPPR 179 (352)
T ss_dssp ---------CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----CHHCCH-HHHHHHHHHHHHHHHHCCC---STTT
T ss_pred ---------hhhhhhhccccccchhhhhhhcccchhhhhhhc-----cccccc-cccccchhhhhhhhHhhhhhhccccc
Confidence 778999999999999999999999998877643 368875 556566655554432 3344333222
Q ss_pred ccccccccchhhhhHHHHHHH-HHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc---cchhhHHHHHHhHH
Q 016266 221 EKETADASVNFYSYLVSLSKS-ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG---VSGVGGAMAVYGAF 296 (392)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~~gi~ 296 (392)
+++.++++. ++.++..++ ..+..+++.+|......+..+...... ..+.+.+..+..+ ..+.+.+..+.+++
T Consensus 180 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
T PF07690_consen 180 ERESPKESE---SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGF-SFFLPLYLQEVLGFSGPSQAGLLFSIFGIV 255 (352)
T ss_dssp T--SSTTTT-----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHCCTHHHHHHHHHHHHHH
T ss_pred ccccccccc---cccccccccccccccccchhhhhhhhhhHHHHHHHHh-hcccchhhhhccCCCHHHHHHHHHHHHHHH
Confidence 111111000 000111111 223344555542222222221111111 2222333222233 34667778899999
Q ss_pred HHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhcc-
Q 016266 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK- 375 (392)
Q Consensus 297 ~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p- 375 (392)
..+++++.|+++||+++|+... .......+..+.. .......+ ....++..++.|++.+...+...+++.+.+|
T Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 330 (352)
T PF07690_consen 256 GIIGSLLAGRLSDRFGRRRRLL-IAILLLILGALGL-LLLPFSSS---PVWLIIALFLIGFGFGIVFPILFSLIQELVPP 330 (352)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHH-CCSHHHCH---HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT
T ss_pred HHHHHHHHHHHHHHcCcHHHHH-HHHHHHHHHHHHH-HHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999876543 3333333332221 11211111 2456667788999999999999999999997
Q ss_pred CCccccchhhhh
Q 016266 376 HDTVTANPTLIR 387 (392)
Q Consensus 376 ~~~~~a~~~~~~ 387 (392)
++++.+.+.++.
T Consensus 331 ~~~g~~~g~~~~ 342 (352)
T PF07690_consen 331 EYRGTAFGLFNS 342 (352)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455778877653
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=193.35 Aligned_cols=324 Identities=14% Similarity=-0.002 Sum_probs=196.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+++|-.+...+++++........+.+.+++.++.+.+. ...+.....+.+++++.|++.||+|||+++..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455555555555443333344444444433323222 23445556677889999999999999999999988777
Q ss_pred HHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 101 LFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 101 l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
+.... .+.++++.+++.|+++|++.+...+....++.++. |+++||++++........|..+++.+...
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 153 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY----------EGKQRGSRLLFTDSFFSMAGMIFPIIAAY 153 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc----------ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 46788888899999999999988877777777765 77889999998877778888888877655
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHH
Q 016266 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA 259 (392)
Q Consensus 180 ~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 259 (392)
+... ..+||.. |.+.+++.++..++.+..+.|+++++++ +. +++ .. +...+++++......+
T Consensus 154 l~~~----~~gw~~~-f~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~---~~~----~~----~~~~~~~~~~~~~~~~ 215 (394)
T PRK03699 154 LLAR----SIEWYWV-YACIGLVYVAIFILTLFSEFPALGKHAP--KA---DKP----VA----KEKWGIGVLFLAIAAL 215 (394)
T ss_pred HHhc----cccHHHH-HHHHHHHHHHHHHHHHhcCCccccccCc--cc---cCc----cc----cccCChHHHHHHHHHH
Confidence 5432 2479875 4444444443333333333222111111 00 000 00 1112344444333222
Q ss_pred hhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccc
Q 016266 260 YSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYS 337 (392)
Q Consensus 260 ~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~ 337 (392)
......... ..+.|.+.++ +++.++.+.+...+.++..+|+++.|+++||+++|+.+. ....+..+...+ ....
T Consensus 216 ~~~~~~~~~-~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~-~~~~~~~~~~~~--~~~~ 291 (394)
T PRK03699 216 LYILAQLTF-ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT-VLAGLALVLMYL--FVNT 291 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHH--HHHc
Confidence 111111111 2233444433 344457788888999999999999999999999887543 344333333222 2233
Q ss_pred cCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhh
Q 016266 338 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTL 385 (392)
Q Consensus 338 ~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~ 385 (392)
++. ....+..+++|++.+...+...+...+..|++++.+.+..
T Consensus 292 ~~~-----~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 334 (394)
T PRK03699 292 DDP-----SHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFI 334 (394)
T ss_pred CCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 332 3445566788988888888888888888887666555543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=194.13 Aligned_cols=325 Identities=16% Similarity=0.107 Sum_probs=199.0
Q ss_pred cccCccccchhHHHHHHHHHHHHHHHHhHHH-----hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHH
Q 016266 19 QVLTPKNYTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALI 93 (392)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~ 93 (392)
|.|.++++.+.+..+.++.++.+........ ++++++.+...-....+.....+.+++++.|+++||+||||++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~ 85 (392)
T PRK12382 6 QTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL 85 (392)
T ss_pred cCcCCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence 4566667777777777776666655443332 23334433322233456666677888999999999999999999
Q ss_pred HhhhHHHHHHHh----h-----hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHH
Q 016266 94 LGTTGYWLFVAA----N-----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWG 164 (392)
Q Consensus 94 ~g~~~~~l~~~~----~-----~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~ 164 (392)
.+.+...+.... . ..++++.+++.|+++|++.+...++..+++.++. |+|+|++++|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~a~~~~~~ 155 (392)
T PRK12382 86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV----------GPKHSGKVMSWNGM 155 (392)
T ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------CccccchhhhHHHH
Confidence 988765543221 1 1357788899999999999988887777777765 78999999999988
Q ss_pred HHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHH
Q 016266 165 MFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITT 244 (392)
Q Consensus 165 ~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (392)
+...|..+|+.++..+... .+||.. +.+.. ++.++...+.++.+++++++ + ++++.++. .+
T Consensus 156 ~~~~g~~~g~~~~~~l~~~-----~g~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~----~~ 216 (392)
T PRK12382 156 AMYGALAAGAPLGLLLHSH-----FGFAAL-ALTTM---VLPLLAWAFNGTVRKVPAHA-G-----ERPSLWSV----VG 216 (392)
T ss_pred HHHHHHHHHHHHHHHHHhc-----cChHHH-HHHHH---HHHHHHHHHHHhccCCCCCc-c-----cCchHHHH----HH
Confidence 8888999999888766543 367752 22222 22222222223211111111 0 01112221 12
Q ss_pred hhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHH
Q 016266 245 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIA 324 (392)
Q Consensus 245 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~ 324 (392)
.+..+...... .+...... ..+.+.+.++ .+.+..+.....++++.++++++.|++.||+|+||.+ ..+..+
T Consensus 217 ~~~~~~~~~~l-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~ 288 (392)
T PRK12382 217 LIWKPGLGLAL-----QGVGFAVI-GTFVSLYFAS-KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA-IVSLLV 288 (392)
T ss_pred HHHHhHHHHHH-----HHHHHhHH-HHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh-HHHHHH
Confidence 22222221111 11111111 1111222211 2444556667778888899999999999999988754 456655
Q ss_pred HHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhcc-CCccccchhhhh
Q 016266 325 QVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK-HDTVTANPTLIR 387 (392)
Q Consensus 325 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p-~~~~~a~~~~~~ 387 (392)
..++.+. ....++ .+..++..++.|++.+...+...+.+.|.+| ++++.+++.++.
T Consensus 289 ~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (392)
T PRK12382 289 ETVGLLL--LWLAPT-----AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAA 345 (392)
T ss_pred HHHHHHH--HHHccc-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6555443 223333 3456667788999988888888889999886 556778887653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=190.69 Aligned_cols=306 Identities=13% Similarity=0.072 Sum_probs=192.7
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHH
Q 016266 51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIW 129 (392)
Q Consensus 51 ~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~ 129 (392)
.++++.+........+.....+.+++++.|+++||+|||+++.++.....+.... ..+++++.++..|+++|++.+..+
T Consensus 40 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 119 (406)
T PRK15402 40 VEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIG 119 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHH
Confidence 3344433333333455666677788899999999999999999998877766554 467888888999999999999888
Q ss_pred hhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 016266 130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL 209 (392)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~ 209 (392)
+...+++.+.. |+++|++++++.......+..+|+.++..+.++ .+||.. +.+.+++.++..+.
T Consensus 120 ~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~~w~~~-~~~~~~~~~~~~~~ 183 (406)
T PRK15402 120 AVGYAAIQESF----------EEADAIKITALMANVALLAPLLGPLVGAALIHV-----LPWRGM-FVLFAALAALSFFG 183 (406)
T ss_pred HHHHHHHHHHh----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCccHH-HHHHHHHHHHHHHH
Confidence 87777777765 678889999988777778888898887766543 368875 55545554444333
Q ss_pred H-HhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccccc--chh
Q 016266 210 M-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGV 286 (392)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~--s~~ 286 (392)
. ...||++++.+++ .+.++..++..+.++||+++.......+.......+ ..+.|.+..+..+. .+.
T Consensus 184 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~g~~~~~~ 253 (406)
T PRK15402 184 LWRAMPETAGRVGEK---------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAW-IALSPVILISGEQLSSYEY 253 (406)
T ss_pred HHHhCCCCCcccccc---------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhCCCHHHH
Confidence 2 3344332211110 001111223345678888876554433222211111 11223333232333 456
Q ss_pred hHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcc-ccCCCccchHHHHHHHHHHhhhhhhhhhH
Q 016266 287 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY-SVTSGVLGTLYPLIMAALLGIGDGVLNTQ 365 (392)
Q Consensus 287 ~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~l~G~~~~~~~~~ 365 (392)
+.......++..+++++.|+++||+++|+. +.++.++..++..+..... ....+ ....++..+++|++.+...+.
T Consensus 254 g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~g~g~~~~~~~ 329 (406)
T PRK15402 254 GLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAALATVISSHA---YLWLTAGLSLYAFGIGLANAG 329 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHHccccc---HHHHHHHHHHHHHHHHHHhhh
Confidence 766677777889999999999999998875 4456655554433221111 11111 245567778899998887777
Q ss_pred HHHHHHhhccCCccccchhhh
Q 016266 366 LSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 366 ~~a~~~~~~p~~~~~a~~~~~ 386 (392)
.++......|++++.+.+.++
T Consensus 330 ~~~~~~~~~~~~~g~~~~~~~ 350 (406)
T PRK15402 330 LYRLTLFSSDVSKGTVSAAMG 350 (406)
T ss_pred HHHHHhhhccccccHHHHHHH
Confidence 777666656667777777654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=189.39 Aligned_cols=315 Identities=12% Similarity=0.043 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHH----HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV 103 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~----~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~ 103 (392)
+.+..+..+.+.......... .++++++.+........+.....+.+++++.|++.||+|||+++..+..+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 445555555554443333333 3444444333333344566677788999999999999999999999998887766
Q ss_pred Hh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 104 AA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 104 ~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.. ..+++++.+++.|+++|++.+...+....++.++. |+++|+++++.+..+..+|..+|+.++..+..
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII----------KPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------ChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 54 47889999999999999999988877777777765 67889999999988888998898888776654
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhh
Q 016266 183 DDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS 261 (392)
Q Consensus 183 ~~~~~~~~wr~~~f~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 261 (392)
. .+||.. |.+.+++.++..+. ...+|+++++ ++ .+.++ ..+.+++++.+.........
T Consensus 153 ~-----~gwr~~-f~~~~~~~~~~~~~~~~~lp~~~~~--~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~ 211 (382)
T PRK10091 153 E-----FSWRYT-FLLIAVFNIAVLASIYFWVPDIRDE--AK---------GGLRE----QFHFLRSPAPWLIFAATMFG 211 (382)
T ss_pred h-----ccHHHH-HHHHHHHHHHHHHHHHHhCCCCCcc--cc---------cCHHH----HHHHhcChHHHHHHHHHHHH
Confidence 2 468875 55545444433332 2334442211 11 00111 12456777766544332211
Q ss_pred hHHhhhhhcccchhhhc-cccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCC
Q 016266 262 GLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS 340 (392)
Q Consensus 262 g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~ 340 (392)
......+.+...+.+.+ .+.+.++.+++..+.+++..+++++.|++.||+++|+.+ ..+..+..++.+.. ....++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~-~~~~~~~~i~~~~~-~~~~~~- 288 (382)
T PRK10091 212 NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA-AVTDFIIVLALLML-FFFGGM- 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH-HHHHHHHHHHHHHH-HHHHhh-
Confidence 11111111222333322 234445788888999999999999999999999988754 45555555553322 112222
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccc
Q 016266 341 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVT 380 (392)
Q Consensus 341 ~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~ 380 (392)
.+...+..++.+++.....+.......+..++++..
T Consensus 289 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (382)
T PRK10091 289 ----KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELL 324 (382)
T ss_pred ----HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHH
Confidence 234444555566665555555554444444433433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=188.34 Aligned_cols=330 Identities=15% Similarity=0.097 Sum_probs=198.6
Q ss_pred ccccCccccchhHHHHHHHHHHHHHHHHhHHHhH----hhhccCCCch-----hHHHHHHHHHHhhhhhhHHHHHHhhch
Q 016266 18 LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLE----TTVNTEGNLG-----TISLGILYTSFTCFSLVASLVVRVLGS 88 (392)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~----~~l~~~~~~g-----~~~~~~~~~~~~v~~~~~g~l~dr~G~ 88 (392)
++++||+ ++...+.++.++...++.....+. ++++.+.+.. ....++......+++++.|+++||+||
T Consensus 7 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 83 (408)
T PRK09874 7 DTPINWK---RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGR 83 (408)
T ss_pred CCCCcHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence 4445553 455555556555544443333222 3333222111 122345555667888999999999999
Q ss_pred hHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHH
Q 016266 89 KNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA 167 (392)
Q Consensus 89 r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~ 167 (392)
|+++..+.....+.... ...++++.+++.|++.|++.+. .+....++.+.. |+++|++++|+......
T Consensus 84 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 152 (408)
T PRK09874 84 KIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQV----------PRNKSGWALGTLSTGGV 152 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhc----------CHhhhhHHHHHHHHHHH
Confidence 99999988777665544 3567888889999999998654 455555555554 77899999999988889
Q ss_pred HhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhh
Q 016266 168 SHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLL 246 (392)
Q Consensus 168 ~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (392)
.|..+|+.++..+.+. .+||.. |.+..++.++..+.. +++|++.++.+++ ++. ..++..+.+
T Consensus 153 ~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~ 215 (408)
T PRK09874 153 SGALLGPLAGGLLADS-----YGLRPV-FFITASVLFLCFLVTLFCIRENFQPVSKK-------EML----HMREVVTSL 215 (408)
T ss_pred HHHHHHHHHHHHHHHH-----hCHHHH-HHHHHHHHHHHHHHHHHHhccCcccccch-------hhh----HHHHHHHhC
Confidence 9999999888776543 368764 555555444444333 4455543211111 001 112334567
Q ss_pred ccchhHHHHHH-HHhhhHHhhhhhcccchhhhccccccc----hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHH
Q 016266 247 ADVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVTPALGVS----GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGG 321 (392)
Q Consensus 247 ~~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~g~s----~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g 321 (392)
++++++..... ............+.++....+...+.+ ..+.+..+.+++..++++..|+++||++||+.+ ..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~-~~~ 294 (408)
T PRK09874 216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL-ITA 294 (408)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH-HHH
Confidence 78876543221 111111111111122211111111112 234556677888999999999999999988754 455
Q ss_pred HHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhh
Q 016266 322 AIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 322 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.....++.+. ..+.++ .+..++..+++|++.+...+...+.+.+..|+ +++.+++.+.
T Consensus 295 ~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (408)
T PRK09874 295 LIFSVLLLIP--MSFVQT-----PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ 353 (408)
T ss_pred HHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence 5544444322 223333 35566777889999999999999999888875 4577777654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=187.67 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=192.8
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHH
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASI 127 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~ 127 (392)
.+.++++.+...-....+.......+++++.|+++||+|||+++..+..+..+.... ...+++..+++.|++.|++.+.
T Consensus 16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~ 95 (377)
T PRK11102 16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAA 95 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 334444433222223345555667788999999999999999999999887776554 3678888889999999999999
Q ss_pred HHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 016266 128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
..+...+++.++. |+++|++++++......+|..+|+.++..+.+. .+||.. |.+..++.++..
T Consensus 96 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~ 159 (377)
T PRK11102 96 ASVVINALMRDMF----------PKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-----FSWHAI-FWVLALAAILAA 159 (377)
T ss_pred HHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cChHHH-HHHHHHHHHHHH
Confidence 8888888888876 778999999999988999999999888766543 368774 555444444443
Q ss_pred HH-HHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc-cccccch
Q 016266 208 IL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSG 285 (392)
Q Consensus 208 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~s~ 285 (392)
+. .++++|++++++++ + .+.++..++..+.+++++.+.......+............+..+.+ .+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 231 (377)
T PRK11102 160 ALVFFFIPETLPKERRQ--P------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN 231 (377)
T ss_pred HHHHHhCCccCcccccC--C------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence 33 34455543211111 0 0111222333456778877654433222111111111111222221 2334457
Q ss_pred hhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHH-hccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 286 VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 286 ~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
.+.+....+++..+++++.|++.||+|+|+.+ ..+.++..+..+... ....+.. .+...+...+++.+.+...+
T Consensus 232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 306 (377)
T PRK11102 232 FGYYFALNIVFLFVMTIINSRFVRRVGALNML-RFGLWIQFIMGIWLVVSALLDLG----FWALVVGVAAFVGCVSMISS 306 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHhhH
Confidence 88888999999999999999999999988754 344443322211111 1111111 23344444455555555566
Q ss_pred HHHHHHHhhccCCccccchhhhh
Q 016266 365 QLSALLGILFKHDTVTANPTLIR 387 (392)
Q Consensus 365 ~~~a~~~~~~p~~~~~a~~~~~~ 387 (392)
...+...|..|++++.+.+.++.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~ 329 (377)
T PRK11102 307 NAMAVILDEFPHMAGTASSLAGT 329 (377)
T ss_pred HHHHHHhccccccchHHHHHHHH
Confidence 66677788888888777776653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-21 Score=186.10 Aligned_cols=307 Identities=14% Similarity=0.096 Sum_probs=191.7
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHH
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASI 127 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~ 127 (392)
.+.++++.+.+......++++..+++++++.|+++||+|||+++..+..++.+.... ..+++++.+++.|+++|++.+.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~ 120 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF 120 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455566665555666788888889999999999999999999999998888776654 4778999999999999999886
Q ss_pred HHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 016266 128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
..+....++.|+. |+++|+++++++.....+|..+|++++..+.++ .+||.. |++..++.+++.
T Consensus 121 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-----~gw~~~-f~~~~~~~~i~~ 184 (413)
T PRK15403 121 IATVGYVTVQEAF----------GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-----VHWKVL-FAIIAVMGLIAF 184 (413)
T ss_pred HHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHH-HHHHHHHHHHHH
Confidence 5555555555554 778899999999999999999999988776643 479875 666666655554
Q ss_pred HHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccc--cccc
Q 016266 208 ILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA--LGVS 284 (392)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--~g~s 284 (392)
+.. +.+||+++++ ++ + .+.++..++..+.++||+++............... ...+.|.+.++. .+..
T Consensus 185 ~~~~~~lp~~~~~~--~~---~----~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~ 254 (413)
T PRK15403 185 VGLLLAMPETVKRG--AV---P----FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTS 254 (413)
T ss_pred HHHHHhCCCCcccc--CC---C----CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHH
Confidence 433 3455532211 10 0 01112234455678999988765543332221111 122334444333 3444
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhc--cccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN--YSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
+.++.......+..+++.+.+++.+|..+++... .+..+..++.+..... ..++. +...++..+++++|.+..
T Consensus 255 ~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~ig~~l~~~~~~~~~~~----~~~~~~~~~l~~~G~~~~ 329 (413)
T PRK15403 255 QFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIW-RAVPIQLVGLALLIVGNLLWPHV----WLWSVLGTSLYAFGIGLI 329 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH-HHHHHHHHHHHHHHHHHHHcccc----HHHHHHHHHHHHHHHHHH
Confidence 6777777778888888888888765444443321 1221222221111111 12221 233556777788888887
Q ss_pred hhHHHHHHHhhccCCccccchhhh
Q 016266 363 NTQLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 363 ~~~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
.+...+..-...++.++++.+.++
T Consensus 330 ~p~~~~~al~~~~~~~G~a~a~~~ 353 (413)
T PRK15403 330 FPTLFRFTLFSNNLPKGTVSASLN 353 (413)
T ss_pred hHHHHHHHhccCCCCCcHHHHHHH
Confidence 777774332222334566666554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=193.20 Aligned_cols=306 Identities=12% Similarity=0.059 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h------------chhhHHHHHHHHHHhhhHHHHHh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L------------FPSWYTMVPASLYLGFAASIIWV 130 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~------------~~~~~~l~~~r~l~Gig~g~~~~ 130 (392)
..+.......+++++.|+++||+|||+++.++.+++.+..... . .+.+..+++.|+++|++.|..++
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM 139 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence 3556666778899999999999999999999998877655432 2 12245678999999999999999
Q ss_pred hhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchhHHHHHHHHHHHHH
Q 016266 131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
...++++|+. |+|+||+++|+...+..+|..++++++..+..... ....+||.. |++.++..++..
T Consensus 140 ~~~~~i~e~~----------~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~-f~~~~~~~~~~~ 208 (479)
T PRK10077 140 LSPMYIAEIA----------PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYM-FASEAIPALLFL 208 (479)
T ss_pred HHHHHHHhhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHH-HHHHHHHHHHHH
Confidence 9999999987 78899999999988888888888777655442211 123689885 555555555544
Q ss_pred HHHHhccCCccc----cccccccc---cchhhhhHHHHHHHHHHhhc-----cchhHHHHHHHHh-----hhHHhh--h-
Q 016266 208 ILMCFLRKEEDK----GEKETADA---SVNFYSYLVSLSKSITTLLA-----DVRMLLIIPLFAY-----SGLQQA--F- 267 (392)
Q Consensus 208 ~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-----~g~~~~--~- 267 (392)
+..++++|+++. .++++.+. +..+....++..++..+.++ .++.+........ ..+... +
T Consensus 209 ~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (479)
T PRK10077 209 MLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGIN 288 (479)
T ss_pred HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChh
Confidence 445666765321 11110000 00000000111111111111 1111111111111 111111 0
Q ss_pred hhcccchhhhcccccc--chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccch
Q 016266 268 VWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGT 345 (392)
Q Consensus 268 ~~~~~~~~~~~~~~g~--s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 345 (392)
....+.|.+.. ..|. ..........++..++++++.|+++||+|||+. +..+.++..++.+++......+.. .
T Consensus 289 ~~~~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-~i~~~~~~~v~~~~l~~~~~~~~~---~ 363 (479)
T PRK10077 289 VVLYYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGTAFYTQAP---G 363 (479)
T ss_pred HHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHhHHHHHHHHHHHHHHHhcCcc---c
Confidence 01122333322 2333 234555677888999999999999999998875 456676666654432111111211 1
Q ss_pred HHHHHHHHHHhhhhhh-hhhHHHHHHHhhccC-Cccccchhh
Q 016266 346 LYPLIMAALLGIGDGV-LNTQLSALLGILFKH-DTVTANPTL 385 (392)
Q Consensus 346 ~~~~i~~~l~G~~~~~-~~~~~~a~~~~~~p~-~~~~a~~~~ 385 (392)
.......++++.+.+. +.+..++++.|.+|+ +|+.+++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 405 (479)
T PRK10077 364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA 405 (479)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHH
Confidence 2333344455554443 446788999999985 567777754
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=187.57 Aligned_cols=297 Identities=15% Similarity=0.094 Sum_probs=182.5
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+.......+++++.|+++||+|||+++..+..+..+.... ...+++..+++.|++.|++.+..++...+++.++.
T Consensus 59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 134 (398)
T TIGR00895 59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA---- 134 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHc----
Confidence 3444456678899999999999999999998877765554 46788888889999999999999998888888886
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHH-HHHHHHhccCCccc---c
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDK---G 220 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~-~~~~~~~~~~~~~~---~ 220 (392)
|+++|++++|+......+|..+|+.+...+.+. .+|+.. +.+.+++..+ ..+...+++++++. +
T Consensus 135 ------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (398)
T TIGR00895 135 ------PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-----FGWRSL-FYVGGIAPLLLLLLLMRFLPESIDFLVSK 202 (398)
T ss_pred ------CHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-----ccceee-hhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence 778999999999999999999999888766543 368764 4444333333 33333455554221 1
Q ss_pred cccc---------------ccccchhhhhHHHHHHHHHHhhcc----chhHHHHHHHHhhhHHhhhhhcccchhhh-ccc
Q 016266 221 EKET---------------ADASVNFYSYLVSLSKSITTLLAD----VRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPA 280 (392)
Q Consensus 221 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~ 280 (392)
++++ .+.+..+++...+..++..+.+++ ++.+................ ..+.|.+. +.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g 281 (398)
T TIGR00895 203 RPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFL-TNWLPKLMVELG 281 (398)
T ss_pred CHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 0000 000000000000011122222222 22222211111111111111 12223222 123
Q ss_pred cccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhh
Q 016266 281 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 281 ~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
.+.++.+......+++.++++++.|+++||+++|+ ... +.....+....+ .....+ ....++..++.|++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~g~~~~ 353 (398)
T TIGR00895 282 FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-TAL-LLLLGAVFAVLV-GSTLFS-----PTLLLLLGAIAGFFVN 353 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHH-HHHHHHHHHHHH-HHHhhC-----HHHHHHHHHHHHHHHH
Confidence 34456788888999999999999999999999873 333 333232222221 111222 3556677788999999
Q ss_pred hhhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 361 VLNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
...+..++++.|.+|+ +++.+++.++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 381 (398)
T TIGR00895 354 GGQSGLYALMALFYPTAIRATGVGWAIG 381 (398)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 9999999999999985 45777776654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=186.38 Aligned_cols=317 Identities=17% Similarity=0.166 Sum_probs=194.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+++|+++.+.++.++.-........+.+.+.++.+.+. +..+.....+.+++++.|+++||+|||+++..+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776665555544444444433333332 23455555667888999999999999999999998887
Q ss_pred HHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 101 LFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 101 l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
+.... ...++++.+++.|+++|++.+..++...+.+.+.. ++++||+++|.+....+.|..+|+.++..
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----------TSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76554 46789999999999999999998887656555554 67899999999999999999999988776
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHH
Q 016266 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA 259 (392)
Q Consensus 180 ~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 259 (392)
+.+.. .|.. .+....+ ....+..++.+.++++. ++ + +..+ ..+.+++|+++......+
T Consensus 153 l~~~~-----~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~----~~~~-------~~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 153 VSTEL-----MSVL--PWVTGLV-LAAILPLLFTRILNQQA-EN--H----DSTS-------IWPMLKLRQARLGVNGCI 210 (381)
T ss_pred ccccc-----cchH--HHHHHHH-HHHHHHHHHhcccCCCC-CC--C----CCCC-------HHHHHHhcchHHHHHHHH
Confidence 64421 1111 1121111 11122222223222111 11 0 0111 123456776664333222
Q ss_pred hhhHHhhhhhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcccc
Q 016266 260 YSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV 338 (392)
Q Consensus 260 ~~g~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~ 338 (392)
..+........ +.|.+. +.+.+.+.++.....+.++.++++++.|++.||+++|+. +..+.....++.... . +
T Consensus 211 ~~~~~~~~~~~-~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-l~~~~~~~~~~~~~~---~-~ 284 (381)
T PRK03633 211 ISGIVLGSLYG-LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-LRVQVFVVILGSIAM---L-S 284 (381)
T ss_pred HHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-HHHHHHHHHHHHHHH---h-h
Confidence 22222111112 223333 233344567888888999999999999999999998874 345555555543321 1 2
Q ss_pred CCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhh
Q 016266 339 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTL 385 (392)
Q Consensus 339 ~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~ 385 (392)
. ........++|++.....|...+.+.|..|+++ ..+.+.+
T Consensus 285 ~------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 326 (381)
T PRK03633 285 Q------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL 326 (381)
T ss_pred h------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 223344566777777778888999999887544 4444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=184.61 Aligned_cols=289 Identities=12% Similarity=0.017 Sum_probs=184.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..++....+.+++++.|+++||+|||+++..+..+..+.... ...++++.+++.|+++|++.+...+...+++.++.
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-- 123 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRY-- 123 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--
Confidence 455666677889999999999999999999998877665544 46788888899999999998877776666666654
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccccc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK 222 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
|++++++..+........+..+|+.++..+.++ .+||.. |.+..++.++..+..++++++++++++
T Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (401)
T PRK11043 124 --------PAQKANRVFATIMPLVALSPALAPLLGAWLLNH-----FGWQAI-FATLFAITLLLILPTLRLKPSKKARKQ 189 (401)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChHHH-HHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence 677888888888877888888898888776543 468874 444444444444444444443221110
Q ss_pred ccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc-cccccchhhHHHHHHhHHHHHHH
Q 016266 223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
+ ++ + ++..+.+++++++...............+ ..+.|.+.+ .+.+.++.+.......++..+|+
T Consensus 190 ~------~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~ 255 (401)
T PRK11043 190 S------QD----A---LTFKQLLKSKTYLGNVLIFAACSAAFFAW-LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGG 255 (401)
T ss_pred c------hH----H---HHHHHHHcChhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 1 12335567777654332222111111111 112233332 23344467777788888999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHH-HhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccc
Q 016266 302 LAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVT 380 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~ 380 (392)
++.+++.||+++|+.. ..+.+...++.+.. .......++ ....++...++|++.+...+...+...+..|++++.
T Consensus 256 ~~~~~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 331 (401)
T PRK11043 256 YGCRAALQKWGGEQLL-PWLLVLFAVSVIAIWLASLLSHPS---LVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGK 331 (401)
T ss_pred HHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChH
Confidence 9999999999987643 23333332222111 111111111 234455567788888888888888888888988888
Q ss_pred cchhhh
Q 016266 381 ANPTLI 386 (392)
Q Consensus 381 a~~~~~ 386 (392)
+.+.++
T Consensus 332 ~~g~~~ 337 (401)
T PRK11043 332 AAALQN 337 (401)
T ss_pred HHHHHH
Confidence 888776
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=190.29 Aligned_cols=317 Identities=12% Similarity=0.033 Sum_probs=189.3
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHH
Q 016266 50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASII 128 (392)
Q Consensus 50 l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~ 128 (392)
+++.++.+........+.......+++++.|+++||+|||+++.++.++.++.... ...++++.+++.|++.|++.+..
T Consensus 20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 99 (399)
T TIGR00893 20 LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPF 99 (399)
T ss_pred HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 34444433222223345555666788899999999999999999998887776554 46779999999999999999999
Q ss_pred HhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016266 129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI 208 (392)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~ 208 (392)
++....++.|+. |+|+|++++|+......+|..+|+.++..+... .+||.. |.+.+++.++..+
T Consensus 100 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~ 163 (399)
T TIGR00893 100 FPGIILIVASWF----------PASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSWQWA-FIIEGVLGIIWGV 163 (399)
T ss_pred hhHHHHHHHHhC----------CHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCchHH-HHHHHHHHHHHHH
Confidence 999899998886 778999999999999999999999888776543 368874 4444444444333
Q ss_pred HH-HhccCCcccccc--cccccc-ch-------hhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhh
Q 016266 209 LM-CFLRKEEDKGEK--ETADAS-VN-------FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV 277 (392)
Q Consensus 209 ~~-~~~~~~~~~~~~--~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 277 (392)
.. +..++++++++. ++.+.. .+ +++..++..++..+.+++|+++......+......... ..+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 242 (399)
T TIGR00893 164 LWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFF-LTWFPTYL 242 (399)
T ss_pred HhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence 32 334443221110 000000 00 00000000112345677888776554433222222211 22233333
Q ss_pred ccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHH---HHHHHhccccCCCccchHHHHHHH
Q 016266 278 TPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVV---FLWILINYSVTSGVLGTLYPLIMA 352 (392)
Q Consensus 278 ~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~---~~~~~~~~~~~~~~~~~~~~~i~~ 352 (392)
.+..+ ..+.+.+....+++..+++++.|+++||++||+...........++ ............ .....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 318 (399)
T TIGR00893 243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN----IPYAALAL 318 (399)
T ss_pred HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch----hHHHHHHH
Confidence 33233 3467888888999999999999999999998852111111111111 001111111111 12222233
Q ss_pred HHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 353 ALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 353 ~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
.+.+.+.....+...+++.|.+|+ +++.+++.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (399)
T TIGR00893 319 VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINS 354 (399)
T ss_pred HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHH
Confidence 333333333788999999999985 45677776654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=189.37 Aligned_cols=299 Identities=12% Similarity=0.011 Sum_probs=182.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHH-HHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMV-PASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~-~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
..+.++..+.++.++.|+++||+|||++++.+.++..+..+. ..+++++.++ ..|+++|++.+..++....++.++.
T Consensus 59 ~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~- 137 (455)
T TIGR00892 59 ISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYF- 137 (455)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-
Confidence 345555566778899999999999999999998777665554 3667777665 4579999999887666666666653
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc--
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK-- 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~-- 219 (392)
+++|+++.|+..++..+|..+|+.+...+... .|||.. |.+.+++.++..+..++++++++.
T Consensus 138 ----------~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-----~gwr~~-f~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (455)
T TIGR00892 138 ----------YRRRPLANGLAMAGSPVFLSTLAPLNQYLFES-----FGWRGS-FLILGGLLLHCCVCGALMRPVGPSQR 201 (455)
T ss_pred ----------HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----hChHHH-HHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 47899999999988888888888877666543 479875 555555555444444444432111
Q ss_pred --ccc--ccc--cccchh--hhhHHHHHHHH--HHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccchhhHH
Q 016266 220 --GEK--ETA--DASVNF--YSYLVSLSKSI--TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGA 289 (392)
Q Consensus 220 --~~~--~~~--~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~ 289 (392)
+.+ +.. +....+ .....+..++. .+.+++|+++......+..+.........+++...+.+.+..+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~ 281 (455)
T TIGR00892 202 VSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFL 281 (455)
T ss_pred cccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHH
Confidence 000 000 000000 00001111111 25678888876554332222211111111222222223444567888
Q ss_pred HHHHhHHHHHHHhhhhhhccCC--CCchhhH-HHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHH
Q 016266 290 MAVYGAFDAICSLAAGRLTTGL--PSITFIV-SGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL 366 (392)
Q Consensus 290 ~~~~gi~~~~g~~~~G~lsd~~--g~r~~~~-~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~ 366 (392)
.++.+++.++++++.|+++||. ++|+... ..+.++..++.+ +....++ .+.+++..+++|++.+...+..
T Consensus 282 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l--l~~~~~~-----~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 282 LSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL--LCALAGD-----YTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH--HHHHhch-----HHHHHHHHHHHHHHhchHHHHH
Confidence 8999999999999999999974 2232222 122222222222 1222332 3556677888999999999999
Q ss_pred HHHHHhhccC-Cccccchhhh
Q 016266 367 SALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 367 ~a~~~~~~p~-~~~~a~~~~~ 386 (392)
++++.|.+|+ +++.+++.++
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~ 375 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVT 375 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHH
Confidence 9999999975 4577877765
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=187.34 Aligned_cols=319 Identities=14% Similarity=0.076 Sum_probs=191.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhH-----hhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLE-----TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~-----~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
|.++++..+.++.++.+........+. +.++.+...-....+.....+.+++++.|+++||+|||+++..+.+++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 455777777766666655544333222 222322222223355666677889999999999999999999998876
Q ss_pred HHHHHh----hhc-----hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhh
Q 016266 100 WLFVAA----NLF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ 170 (392)
Q Consensus 100 ~l~~~~----~~~-----~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~ 170 (392)
++.... ... .++..+++.|+++|++.+...+....++.++. |+|+|++++++.......|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~ 161 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV----------GALHTGRVISWNGIATYGAL 161 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc----------ChhhhccchhhhhhhhhHHH
Confidence 554332 122 24667889999999999998888777777765 78899999999888888888
Q ss_pred hhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccch
Q 016266 171 FVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVR 250 (392)
Q Consensus 171 ~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (392)
.+|+.++..+.+. .+||.. +.+..++ +++..++.++.++.+++++ ++.+.++.++ +.+++.
T Consensus 162 ~~g~~l~~~l~~~-----~g~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~- 222 (399)
T PRK05122 162 AIGAPLGVLLYHW-----GGLAGL-GLLIMLL---ALLGLLLARPRPAVPPVKG------ERLPFRRVLG---RVWPYG- 222 (399)
T ss_pred HHHHHHHHHHHHc-----ccHHHH-HHHHHHH---HHHHHHHHhcCCCCCCCCc------cchhHHHHHH---HHHHHH-
Confidence 9999888776653 468763 3332222 2222223332211111110 0111222111 111111
Q ss_pred hHHHHHHHHhhhHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHH
Q 016266 251 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL 330 (392)
Q Consensus 251 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~ 330 (392)
.......+..... ..+.+.+..+ .+.+..+.....++++.++++++.|++.||+++|+. +..+.++..++..
T Consensus 223 -----~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~ 294 (399)
T PRK05122 223 -----MGLALASIGFGTI-ATFITLYYAA-RGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLLVEILGLL 294 (399)
T ss_pred -----HHHHHHHHHHHHH-HHHHHHHHHH-cccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHH
Confidence 1111111111111 1111222211 233455666778889999999999999999998874 4455555555533
Q ss_pred HHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 331 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
. ....++ .+..++..++.|++.+...+...+...+.+|+ +++.+.+.++.
T Consensus 295 ~--~~~~~~-----~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (399)
T PRK05122 295 L--LWLAPS-----PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSV 345 (399)
T ss_pred H--HHHhcc-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 223333 24556677889999988888888888888874 55778887654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=189.98 Aligned_cols=289 Identities=11% Similarity=0.001 Sum_probs=185.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----h--hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----N--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~--~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
.+.....+.+++++.|+++||+|||+++..+..+.++.... . ..++++.+++.|+++|++.+...++..+++.+
T Consensus 58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 137 (417)
T PRK10489 58 VTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPA 137 (417)
T ss_pred HHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444556678899999999999999998887665543321 1 24677888889999999988877777777766
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED 218 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~ 218 (392)
+. |+++|+++.++.....++|..+|+.++..+... .+|++. +.+..+..++..++.+.++++++
T Consensus 138 ~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 201 (417)
T PRK10489 138 LV----------GRENLMQAGAITMLTVRLGSVISPALGGLLIAA-----GGVAWN-YGLAAAGTFITLLPLLRLPALPP 201 (417)
T ss_pred cc----------CHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-----HhhHHH-HHHHHHHHHHHHHHHHhCCCCCC
Confidence 64 778999999999888999999999988776543 246654 44444444444444444554322
Q ss_pred ccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHH
Q 016266 219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAF 296 (392)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~ 296 (392)
+++++ + .+.++.++ .....+++|.++..............+ ..+.|.+.++ +.+.+..+++....+++
T Consensus 202 ~~~~~--~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~g~~~~~~g~~~~~~~~g 271 (417)
T PRK10489 202 PPQPR--E---HPLRSLLA---GFRFLLASPVVGGIALLGGLLTMASAV--RVLYPALADEVWQMGAAQIGLLYAAVPLG 271 (417)
T ss_pred CCccc--c---cchHHHHH---HHHHHHcChHHHHHHHHHHHHHHHHhH--HHhhHHHHHhccCCChhHhHHHHHHHHHH
Confidence 11111 0 01111122 222356677665443322211111111 1223333333 33445678888999999
Q ss_pred HHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC
Q 016266 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH 376 (392)
Q Consensus 297 ~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~ 376 (392)
..+++++.|++.||.++++. +..+.++..++++. +...++ .....++.+++|++.+...+...+++.+..|+
T Consensus 272 ~~ig~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 343 (417)
T PRK10489 272 AALGALTSGWLAHSARPGLL-MLLSTLGSFLAVGL--FGLMPM-----WILAVLCLALFGYLSAISSLLQYTLLQTQTPD 343 (417)
T ss_pred HHHHHHHHHHhhhccCcchH-HHHHHHHHHHHHHH--HHccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 99999999999998665553 34555555555332 233333 34566777888998888888888999999986
Q ss_pred C-ccccchhhhh
Q 016266 377 D-TVTANPTLIR 387 (392)
Q Consensus 377 ~-~~~a~~~~~~ 387 (392)
+ ++.+++.++.
T Consensus 344 ~~~g~~~g~~~~ 355 (417)
T PRK10489 344 EMLGRINGLWTA 355 (417)
T ss_pred HHHHHHHHHHHH
Confidence 4 6888887754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=186.49 Aligned_cols=338 Identities=9% Similarity=-0.015 Sum_probs=205.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCch----hHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH
Q 016266 27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (392)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~ 102 (392)
.++++.+.++.++............+.+.++.+.+ .+..+.......+++++.|+++||+|||+++..+..++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34566666666655444433333333333332222 22344455566788899999999999999999988777765
Q ss_pred HHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 103 VAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 103 ~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
... ...++++.+++.|+++|++.+..++...+++.++. |+++|++++|+.....+.|..+|+.++..+.
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV----------PREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 554 46678888899999999999999888888777775 7789999999999888999999999887776
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHh-ccCCccc-cccccc-----------------cccchhhhh--------
Q 016266 182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCF-LRKEEDK-GEKETA-----------------DASVNFYSY-------- 234 (392)
Q Consensus 182 ~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~~-----------------~~~~~~~~~-------- 234 (392)
++ .+||+. |.+...+..++.+.... .++.+.+ .+.+.. +.+......
T Consensus 159 ~~-----~gw~~~-f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (471)
T PRK10504 159 EY-----ASWHWI-FLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVA 232 (471)
T ss_pred hh-----ccHHHH-HHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHH
Confidence 53 368875 44444444444433332 2322111 111100 000000000
Q ss_pred ----------HHHH----HHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHH
Q 016266 235 ----------LVSL----SKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDA 298 (392)
Q Consensus 235 ----------~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~ 298 (392)
.++. .+...+.+|||+++......++....... ...+.+.+.+...| ...++++.....++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 311 (471)
T PRK10504 233 VGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGM-LPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSM 311 (471)
T ss_pred HHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0000 00012567888877655443332222111 12223333332233 3467888888889899
Q ss_pred HHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-
Q 016266 299 ICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD- 377 (392)
Q Consensus 299 ~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~- 377 (392)
++.++.|+++||+|+|+.+ ..+.++..+...+. .+.+..+. .+...+..++.|++.+...+..+++..+..|++
T Consensus 312 ~~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 386 (471)
T PRK10504 312 GMKRIVVQVVNRFGYRRVL-VATTLGLALVSLLF--MLVALLGW--YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL 386 (471)
T ss_pred HHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHH--Hhcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh
Confidence 9999999999999988754 45665555443322 22221110 233445566788888888888899999999854
Q ss_pred ccccchhhh
Q 016266 378 TVTANPTLI 386 (392)
Q Consensus 378 ~~~a~~~~~ 386 (392)
++.+++.++
T Consensus 387 ~g~~~~~~~ 395 (471)
T PRK10504 387 ASSGNSLLS 395 (471)
T ss_pred ccchHHHHH
Confidence 455666554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=189.02 Aligned_cols=298 Identities=9% Similarity=-0.070 Sum_probs=172.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hc----hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~----~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
.+.....+.+++++.|+++||+|||+++.++.++.++..... +. .++..+++.|++.|++.+..++...+.+.++
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~ 148 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 148 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 455566677889999999999999999999988777655432 22 3677788899999999998888766777776
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhh-hhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHH-HHHHHhccCCc
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQF-VGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG-TILMCFLRKEE 217 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~-~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~-~~~~~~~~~~~ 217 (392)
+ |+++||+++|++..+..+|.. .++++....... .+||.. |.+.+++.++. ++..+++||++
T Consensus 149 ~----------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~gw~~~-f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 149 W----------SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-----NDWHAA-LYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred C----------ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHHHHccCCH
Confidence 5 778999999998877777753 454443322211 268875 55544444443 33445566643
Q ss_pred ccc---cccc--ccc------cchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccc
Q 016266 218 DKG---EKET--ADA------SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVS 284 (392)
Q Consensus 218 ~~~---~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s 284 (392)
++. ++++ ++. +..++.+.++.++ ...+||+++|.......+........ ..+.|.+.++ +++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~P~~l~~~~g~s~~ 289 (452)
T PRK11273 213 QSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFM--QYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALD 289 (452)
T ss_pred hhcCCCChhhhhhccccccccccCCCccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 321 0000 000 0000111222111 13568888876554433322221111 2344444433 34445
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCC--CCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~--g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
+++.+..+++++.++++++.|+++||+ +||+........+..++.+. +...+..+ .....+..++.|.+....
T Consensus 290 ~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~--~~~~~~~~---~~~~~~~~~~~g~~~~~~ 364 (452)
T PRK11273 290 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV--YWLNPAGN---PTVDMACMIVIGFLIYGP 364 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH--HHHhcccC---hHHHHHHHHHHHHHHHhH
Confidence 677778888999999999999999998 44432222222222222221 11222111 123334444455543333
Q ss_pred hhHHHHHHHhhccC-Cccccchhhh
Q 016266 363 NTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 363 ~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.....++..|.+|+ .++.+++.++
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~ 389 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTG 389 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHH
Confidence 33445567789986 4677888764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=182.07 Aligned_cols=304 Identities=14% Similarity=0.064 Sum_probs=185.6
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHH
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASI 127 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~ 127 (392)
.+.++++.+........+.....+.+++++.|+++||+|||+++..+..+..+.... ...+++..+++.|++.|++.+.
T Consensus 33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 112 (394)
T PRK11652 33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGV 112 (394)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhH
Confidence 344444444333333456666677889999999999999999999998877766554 3678888899999999999887
Q ss_pred HHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 016266 128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
..+....+..+.. ++++|+++.++...+...+..+|+.++..+.++ .+||.. |.+..+..++..
T Consensus 113 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~~~~-f~~~~~~~~~~~ 176 (394)
T PRK11652 113 GGVMARTLPRDLY----------EGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-----FGWRAC-YLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChHHH-HHHHHHHHHHHH
Confidence 7666555555543 667899999998888888888898887766543 468875 444444333322
Q ss_pred -HHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cc
Q 016266 208 -ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VS 284 (392)
Q Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s 284 (392)
+..+++||+++++ ++ +.+.++ +..+.++||+++......+........... +.+.+.++..| ..
T Consensus 177 ~~~~~~~~~~~~~~--~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 243 (394)
T PRK11652 177 FSMARWMPETRPAD--AR-------RTRVLA---SYRTLLSNRRFNCYLLMLIGTLAGIAVFEA-CSGVLMGAVLGLSSM 243 (394)
T ss_pred HHHHHhCCccCccc--cc-------hhHHHH---HHHHHHcChHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHcCCCHH
Confidence 2234445432211 10 011122 223456777766433222111111111111 11222222233 34
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
+.++......++..+++++.+++.||.+++........+...+... ...+....+ .+...+..+++|++.+...+
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 244 TVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMW--IPGWFGVMN---VWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccc---HHHHHHHHHHHHHHHHHHHH
Confidence 5677777788889999999999999987433211111122211111 111111111 24566677889999999999
Q ss_pred HHHHHHHhhccCCccccchhhh
Q 016266 365 QLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 365 ~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
...+...+.+|++++.+.+.++
T Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~ 340 (394)
T PRK11652 319 LATSGAMEPFPYLAGTAGALLG 340 (394)
T ss_pred HHHHHHHhhccccchHHHHHHH
Confidence 9999999999987777766554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=186.35 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=175.9
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhH--------HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+++++.|+++||+|||+++.++.+++.+.... ...+++. .+++.|+++|++.+..++...++++|+.
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~--- 125 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA--- 125 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC---
Confidence 467899999999999999999999888776554 3555543 4778999999999999888888888876
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG 220 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
|+++|+++.++...+...|..+|+.+...+..... ....+||.. +.+..++.+++.......+|+++.+
T Consensus 126 -------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (394)
T TIGR00883 126 -------PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIP-FLVSAVLVLIGLYLRRNLEETPVFE 197 (394)
T ss_pred -------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHH-HHHHHHHHHHHHHHHHhcCCChhHH
Confidence 78899999999988888898888877655432111 013578874 4443333333322223334332211
Q ss_pred ccccccccchhhhhHHHHHHHHHHhhccch--hHHHHHHHHhhhHHhhhhhcccchhhhcccc--ccchhhHHHHHHhHH
Q 016266 221 EKETADASVNFYSYLVSLSKSITTLLADVR--MLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL--GVSGVGGAMAVYGAF 296 (392)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~gi~ 296 (392)
+++++ ++.++.+ ..+.+++++ ++......+......... ..+.+.+.++.. +.++.+......+++
T Consensus 198 ~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 267 (394)
T TIGR00883 198 KAQEK--HKKKRGP-------IRETLTKHRKPFLLGLGLVIATTTTFYLI-TTYLPTYLTQTLGLSANSALLVLMLSLIL 267 (394)
T ss_pred HHHhc--cccccCC-------HHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 11100 0001111 123344444 433332222222211111 223333332323 345677788889999
Q ss_pred HHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC
Q 016266 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH 376 (392)
Q Consensus 297 ~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~ 376 (392)
..+++++.|+++||+|||+.++..+.+....+.... .....+.+ .+..++..++.|++.+...+..++.+.|.+|+
T Consensus 268 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 343 (394)
T TIGR00883 268 FFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLL-MALLDSGS---FTLFFFLVLGLALIGGMYTGPMGSFLPELFPT 343 (394)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHHhcCCc---hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc
Confidence 999999999999999988754433332222221111 11221111 24555666788888888899999999999986
Q ss_pred C-ccccchh
Q 016266 377 D-TVTANPT 384 (392)
Q Consensus 377 ~-~~~a~~~ 384 (392)
+ ++.+++.
T Consensus 344 ~~~~~~~~~ 352 (394)
T TIGR00883 344 EVRYTGASL 352 (394)
T ss_pred cceeeEeee
Confidence 4 5666665
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=182.06 Aligned_cols=291 Identities=13% Similarity=0.065 Sum_probs=180.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..+.+...+.+++++.|+++||+|||+++..+..++.+..+. ...++. +..|+++|++.+...|+..+++.|+.
T Consensus 43 ~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~-- 117 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELL-- 117 (393)
T ss_pred HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 345566677888999999999999999999999887765543 233443 66899999999999999999999986
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccccc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK 222 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
|+|+|+++.|+.....+.|..+|+.+++.+... .|+.. +.+...+.+++.+....++|+++++++
T Consensus 118 --------~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~------~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~~~ 182 (393)
T PRK11195 118 --------PGEKLVKANGWMEGSTIAAILLGTVLGGALADP------HAEAA-LAVCALIYLLAALFNLFIPRLGARRPG 182 (393)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 788999999999999999999999998877652 24443 333232223333333445553221111
Q ss_pred ccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHH-hhhHH--hhhhhcccchhhhccccccchhhHHHHHHhHHHHH
Q 016266 223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA-YSGLQ--QAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299 (392)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~--~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~ 299 (392)
.+. .+....++..++..+.+++|.+........ +.... ..+....+.+... +.+..+.|++....+++.++
T Consensus 183 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--g~s~~~~G~~~~~~~~g~i~ 256 (393)
T PRK11195 183 QSW----NPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL--GITLNQPAYLQAVVAIGIAV 256 (393)
T ss_pred cCC----CHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChhHHHHHHHHHHHHHHH
Confidence 100 000011111112234567776654322211 11111 1111112222211 23445789999999999999
Q ss_pred HHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-
Q 016266 300 CSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT- 378 (392)
Q Consensus 300 g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~- 378 (392)
++++.+++.||.++|+. +..+.... +.... +...++ .+...+..+++|++.+...+..++.+.+..|++.
T Consensus 257 g~~~~~~l~~~~~~~~~-~~~g~~~~-~~~~~--~~~~~~-----~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~ 327 (393)
T PRK11195 257 GAGAAARLVTLETVLRV-LPAGILMG-LVVLL--MALQHS-----LLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVG 327 (393)
T ss_pred HHHHHHHHhcCCcccch-HHHHHHHH-HHHHH--HHHHhH-----HHHHHHHHHHHHHhhhhhhhhHHHHHHhhCccccc
Confidence 99999999999887764 44554332 22211 222222 2445566778999999888888998887766543
Q ss_pred -cccch--hhhhhh
Q 016266 379 -VTANP--TLIRQI 389 (392)
Q Consensus 379 -~~a~~--~~~~~~ 389 (392)
+.+.+ +..+|+
T Consensus 328 ~g~~~a~~~~~~~~ 341 (393)
T PRK11195 328 AGHSIAVQNFNENL 341 (393)
T ss_pred chhHHHHHhHHHHH
Confidence 44543 444443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=185.93 Aligned_cols=316 Identities=14% Similarity=0.030 Sum_probs=187.6
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHH
Q 016266 50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASII 128 (392)
Q Consensus 50 l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~ 128 (392)
+++.++.+........+.......+++++.|+++||+|||+++.++..+..+.... ...++++.+++.|++.|++.+..
T Consensus 21 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 100 (379)
T TIGR00881 21 LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMG 100 (379)
T ss_pred HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 33444433322233345566677788999999999999999999999887776654 46788899999999999999999
Q ss_pred HhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhh-HhhhhhccCCCCCCCCcchhHHHHHHHHHHHH-
Q 016266 129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN-LITLAVLKDDKGGSTSGTTLLFIVFLGVITLG- 206 (392)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~-~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~- 206 (392)
++...+++.++. |+++|++++|+.......|..+|+ +++..+... .+||.. |.+.+++.++.
T Consensus 101 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~ 164 (379)
T TIGR00881 101 WPPCGRTVTKWF----------SRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWHWV-FIVPGIIAIIVS 164 (379)
T ss_pred CCchHHHHHHhc----------CHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCchhH-HHHHHHHHHHHH
Confidence 898888888886 778999999999888899998888 455444332 468774 44444444433
Q ss_pred HHHHHhccCCccccc--c-cc--ccc----cchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhh
Q 016266 207 TILMCFLRKEEDKGE--K-ET--ADA----SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV 277 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~--~-~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 277 (392)
++..++.++++++++ + ++ .+. +..+++..........+.+++|.++.+....+......... ..+.+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 243 (379)
T TIGR00881 165 LICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGI-LDWSPLYL 243 (379)
T ss_pred HHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 233344454322110 0 00 000 00000000000012234567887776554433222211111 12233333
Q ss_pred ccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCC-chhhHHHHH-HHHHHHHHHHHhccccCCCccchHHHHHHHH
Q 016266 278 TPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPS-ITFIVSGGA-IAQVVVFLWILINYSVTSGVLGTLYPLIMAA 353 (392)
Q Consensus 278 ~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~-r~~~~~~g~-~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 353 (392)
.+..+ ..+.+......+++..+++++.|++.||..+ |+..+.... ....++.. .....+..+ .....+..+
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~ 318 (379)
T TIGR00881 244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL--VYWLNPAAN---PLMDLICLF 318 (379)
T ss_pred HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH--HHhcCcchh---HHHHHHHHH
Confidence 33333 4567888899999999999999999998643 332221111 11122211 111222211 234455566
Q ss_pred HHhhhhhhhhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 354 LLGIGDGVLNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 354 l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
+.|+......+...++..|.+|+ +++.+.+.++.
T Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 353 (379)
T TIGR00881 319 ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGF 353 (379)
T ss_pred HHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 67776666666777888999975 45777777653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=198.26 Aligned_cols=143 Identities=12% Similarity=0.029 Sum_probs=110.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..++.+....++++++|+++||+|||++++++.++++++.+. .+++++..+++.|++.|++.++..+....+++++.
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~-- 284 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL-- 284 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 356666778899999999999999999999998887776654 46788999999999999999999999999999987
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC--------CCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--------GGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~--------~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
|+++||+.+++..+..++|.++++.++..+....+ ....+||.. +.+.++..++.+++.++++
T Consensus 285 --------p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l-~~i~~lp~ll~ll~~~~lP 355 (742)
T TIGR01299 285 --------AQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF-VIVCAFPCVFAIGALTFMP 355 (742)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHH-HHHHHHHHHHHHHHHHHcC
Confidence 88999999999988889998888877765543211 012468874 4444444444445556677
Q ss_pred CCc
Q 016266 215 KEE 217 (392)
Q Consensus 215 ~~~ 217 (392)
|++
T Consensus 356 ESP 358 (742)
T TIGR01299 356 ESP 358 (742)
T ss_pred CCH
Confidence 754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=190.02 Aligned_cols=290 Identities=14% Similarity=0.077 Sum_probs=190.4
Q ss_pred CCCcCccCccccc-cccccCccccchhHHHHHHHHHHHHHHHHhHH----HhHhhhccC-CCchhHHHHHHHHHHhhhhh
Q 016266 4 VDSRDEEAPLVAD-SLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTE-GNLGTISLGILYTSFTCFSL 77 (392)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~l~~~-~~~g~~~~~~~~~~~~v~~~ 77 (392)
.++.++.+|+.+. ..+..+++..++.++++.+.-++-+...+.+. .++..+|.+ .++|.+ .+.+..++.+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll-~~vf~v~~~i~sP 86 (493)
T KOG1330|consen 8 RTTTSSGNPLIELEGLDHLSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLL-QTVFIVVFMIASP 86 (493)
T ss_pred CCCccCCCcccccccccccccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccch-hHHHHHHHHHHHH
Confidence 4556688888663 33234666666666666666666665544433 566666655 445544 4556668889999
Q ss_pred hHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhh
Q 016266 78 VASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIG 156 (392)
Q Consensus 78 ~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg 156 (392)
++|+++|||+||+++.+|..+|.+.+++ .+...+++++++|.+.|+|.+...+...+.++|.+ |+.+|+
T Consensus 87 l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f----------~~~~Rs 156 (493)
T KOG1330|consen 87 LFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF----------PDDKRS 156 (493)
T ss_pred HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC----------cchhhh
Confidence 9999999999999999999999988775 46788999999999999999999999999999987 788999
Q ss_pred hhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH-HHHHhccCCccccccccccccchhhhhH
Q 016266 157 SFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDKGEKETADASVNFYSYL 235 (392)
Q Consensus 157 ~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (392)
+.+++++.+...|..+|.+.+..+..+. ..||+. |...++++++.. +..++++||++..+++.+..++ ..++.
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~----~~Wr~a-f~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-~~~~~ 230 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLT----FWWRWA-FRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-MVKPF 230 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCc----cceEEE-EEeehHHHHHHHHHHHhhccCcccccccccccCCc-CCCCc
Confidence 9999999999999888888887776554 248875 666677776544 4456778877643322111111 01112
Q ss_pred HHHHHHHHHhhccchhHHHHHHHH----hhhHHhhhhhcccchhhhc-cccccchhhHHHHHHhHHHHHHHhhhhhhccC
Q 016266 236 VSLSKSITTLLADVRMLLIIPLFA----YSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTG 310 (392)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~ 310 (392)
....|+++...|+|.+..-.+.+. .+|. ..++.+.+.++... .+.+.+...+...+.-+++.+|.+++|.++||
T Consensus 231 ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs-~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~ 309 (493)
T KOG1330|consen 231 TSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGS-LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK 309 (493)
T ss_pred cchHHHHHHHHccCceeeehHHHHHHHHhccc-cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHH
Confidence 223345545556555443322222 1221 12222222222111 11122233445577778889999999999998
Q ss_pred C
Q 016266 311 L 311 (392)
Q Consensus 311 ~ 311 (392)
+
T Consensus 310 ~ 310 (493)
T KOG1330|consen 310 L 310 (493)
T ss_pred H
Confidence 4
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=188.39 Aligned_cols=307 Identities=13% Similarity=0.057 Sum_probs=172.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h---chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~---~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
..+..+....+++++.|+++||+|||+++.++.+++.+..... . ..+++.+++.|+++|+|.+..++....+++++
T Consensus 76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (481)
T TIGR00879 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEI 155 (481)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHcc
Confidence 3566667778899999999999999999999998877655432 2 23445788899999999999999888888887
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhh---hhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT---LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~---~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
. |+++|+++++++......|..+|+.++ .... ...+||.. |.+..+..++..+..++++|+
T Consensus 156 ~----------~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~w~~~-f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 156 A----------PKALRGALTSLYQLAITFGILVAYGFGSGKVSLN-----NTLGWRIP-LGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred C----------ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC-----CCccHHHH-HHHHHHHHHHHHHHHhcCCCC
Confidence 6 788999999999988899999998887 2221 23579875 444444444444444556654
Q ss_pred ccc----cccccccc-------cchhhhhHHH------------------HHHHHHHhhcc--chhHHHHHHHHhhhHHh
Q 016266 217 EDK----GEKETADA-------SVNFYSYLVS------------------LSKSITTLLAD--VRMLLIIPLFAYSGLQQ 265 (392)
Q Consensus 217 ~~~----~~~~~~~~-------~~~~~~~~~~------------------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 265 (392)
++. +++++.+. ...+.....+ ..++..+..++ ++.........+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
T TIGR00879 220 PRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTG 299 (481)
T ss_pred hHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Confidence 221 00000000 0000000000 00111111111 11111111111110000
Q ss_pred hhhhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHh-ccccCCC--
Q 016266 266 AFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSG-- 341 (392)
Q Consensus 266 ~~~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~-~~~~~~~-- 341 (392)
......+.+.+. +.+.+....+....+.+++.++++++.|+++||++||+.+ ..+.++..++++++.. .+....+
T Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL-LIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 001122333332 2223334567777888899999999999999999988754 4555555555433211 0111110
Q ss_pred -ccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhhh
Q 016266 342 -VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLIR 387 (392)
Q Consensus 342 -~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~~ 387 (392)
...........++.+.......+...+++.|.+|+ +++.+.+.++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 426 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHH
Confidence 00012222222222223333456677888999986 45667775543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-20 Score=178.35 Aligned_cols=302 Identities=10% Similarity=0.020 Sum_probs=187.2
Q ss_pred HHHhHhhhccCCCchhHHHHHHHHH----HhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHH
Q 016266 47 AQNLETTVNTEGNLGTISLGILYTS----FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYL 121 (392)
Q Consensus 47 ~~~l~~~l~~~~~~g~~~~~~~~~~----~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~ 121 (392)
.+.+...+..+.+.+....+..... ..+.+++.|+++||+|||+++..+..+..+.... ...++++.++..|+++
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333333433444444444444433 3445688999999999999999999888776654 3567888888999999
Q ss_pred hhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHH
Q 016266 122 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLG 201 (392)
Q Consensus 122 Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~ 201 (392)
|++.+..++...+++.++. |+|+|++++|+.....+.|..+|+.++..+.. .+||.. |.+.++
T Consensus 110 g~~~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------~g~~~~-f~~~~~ 172 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLI----------RPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------YDFRLV-CATGAV 172 (400)
T ss_pred HHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHH-HHHHHH
Confidence 9999988888778777775 78899999999999999999999998887762 368764 444444
Q ss_pred HHHHHHHH-HHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccc
Q 016266 202 VITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA 280 (392)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 280 (392)
..++..++ .++++|+.+ . ++ .++.++ +..+.++||+++................ ..+.|.+.++.
T Consensus 173 ~~~~~~i~~~~~~~~~~~-~-~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~ 238 (400)
T PRK11646 173 LFVLAAAFNAWLLPAYKL-S-TV--------RTPVRE---GMTRVLRDKRFVTYVLTLTGYYMLAVQV-MLMLPIMVNDI 238 (400)
T ss_pred HHHHHHHHHHHhCCcccc-c-cc--------chhhHH---HHHHHHcCchHHHHHHHHHHHHHHHHHH-HHhhhhhHHhh
Confidence 43333332 233333211 1 00 001122 2235677888765433221111111111 12334433332
Q ss_pred -cccchhhHHHHHHhHHHHHHHhhhhhhccC-CCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhh
Q 016266 281 -LGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG 358 (392)
Q Consensus 281 -~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~-~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~ 358 (392)
.+..+.+.+.++.+++...+....+++.|| .+.++. +..+.++..++..+ +...++ .....+..+++|++
T Consensus 239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~--l~~~~~-----~~~~~~~~~l~~~g 310 (400)
T PRK11646 239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR-LMAGLLIMSLSMFP--IGMVSN-----LQQLFTLICLFYIG 310 (400)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHH--HHHhhh-----HHHHHHHHHHHHHH
Confidence 233466777777777666666666666654 554443 34555555555332 223333 24455566778888
Q ss_pred hhhhhhHHHHHHHhhcc-CCccccchhhhh
Q 016266 359 DGVLNTQLSALLGILFK-HDTVTANPTLIR 387 (392)
Q Consensus 359 ~~~~~~~~~a~~~~~~p-~~~~~a~~~~~~ 387 (392)
.+...+..++++.+..| ++++.+++.++.
T Consensus 311 ~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~ 340 (400)
T PRK11646 311 SIIAEPARETLSASLADARARGSYMGFSRL 340 (400)
T ss_pred HHHHHccHHHHHHhcCCcccchhhhhHHHH
Confidence 88888999999999997 566888887764
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=183.77 Aligned_cols=301 Identities=10% Similarity=-0.015 Sum_probs=175.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
..+.......+++++.|+++||+|||+++..+.++.++..... . .+++..+.+.|++.|++.+..++....++.+
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~ 145 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVH 145 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3555666777889999999999999999999888776655432 2 2456677888999999999888877777777
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH-HHHHhccCCc
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEE 217 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~-~~~~~~~~~~ 217 (392)
+. |+|+||+++|++....+.|..+++.+....... ..+||.. |.+.+++.++.. +..+++||++
T Consensus 146 ~~----------~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~~w~~~-f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 146 WW----------SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW----FNDWHAA-LYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred hc----------CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH----hhhhHHH-HHHHHHHHHHHHHHHHHhccCCH
Confidence 75 788999999999888888888887665433221 1368875 555555544433 3445566543
Q ss_pred ccc----ccc-cccc------cchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cc
Q 016266 218 DKG----EKE-TADA------SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VS 284 (392)
Q Consensus 218 ~~~----~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s 284 (392)
++. .++ +.+. +.+++.+.++.+. .+.++|++++.......+........ ..+.|.+.++..| ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~l~~~~g~s~~ 287 (438)
T TIGR00712 211 QSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFM--QYVLPNKLLWYIAIANVFVYLLRYGV-LDWSPTYLKEVKHFALD 287 (438)
T ss_pred HhcCCCCchhcccccccccccccccccchHHHHH--HHHccCchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHccCCChh
Confidence 211 000 0000 0000001111111 13678888876654332222111111 1233444433333 44
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcc-ccCCCccchHHHHHHHHHHhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY-SVTSGVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
+++.+..++++++++++++.|+++||+++++... .+..+..+..+.+...+ .+..+ .+...+..+..|++.....
T Consensus 288 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 363 (438)
T TIGR00712 288 KSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYWMNPAGN---PLVDMICMIVIGFLIYGPV 363 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHHccHH
Confidence 6777888899999999999999999996443222 23322211111111112 12111 1233333444555433323
Q ss_pred hHHHHHHHhhccC-Cccccchhhh
Q 016266 364 TQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 364 ~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
....+...|.+|+ +++++.+.++
T Consensus 364 ~~~~~~~~~~~~~~~~g~~~g~~~ 387 (438)
T TIGR00712 364 MLIGLHALELAPKKAAGTAAGFTG 387 (438)
T ss_pred HHHHHHHHHhcChhheeeehhhhc
Confidence 3334567788885 5678888775
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=177.06 Aligned_cols=252 Identities=12% Similarity=0.093 Sum_probs=162.7
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHH
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASI 127 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~ 127 (392)
.+.++++.+.....+..+.....+.+++++.|+++||+|||+.+..+.+++.+.... ...+++..+++.|+++|++.+.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~ 107 (392)
T PRK10473 28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGC 107 (392)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhH
Confidence 444444433322233345555566788899999999999999999998887776554 3667888888899999999999
Q ss_pred HHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 016266 128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
.++...+++.++. |+++|+++.++.......+..+|+.++..+... .+||.. +.+..++.++..
T Consensus 108 ~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-----~g~~~~-~~~~~~~~~i~~ 171 (392)
T PRK10473 108 CYVVAFAILRDTL----------DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-----FPWQSL-FYTMAAMGILVL 171 (392)
T ss_pred HHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cChHHH-HHHHHHHHHHHH
Confidence 8888888888876 778999999999888888888888887765432 468764 555454444433
Q ss_pred HH-HHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhh-hHHhhhhhcccchhhhccccc--c
Q 016266 208 IL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAFVWAEFTKEIVTPALG--V 283 (392)
Q Consensus 208 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~g--~ 283 (392)
++ .+.++|++++++++ + .+.. ++..+.++|++++......... .....+ ..+.+.+..+..| .
T Consensus 172 ~~~~~~~~~~~~~~~~~-------~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~ 238 (392)
T PRK10473 172 LLSLFILKETRPARAPA-------A-SSKP---RENSESLLNRFFLSRLVITTLSVTVILTF--VNTSPVLLMEQMGFSR 238 (392)
T ss_pred HHHHHHcCCCCCcccCC-------c-cchH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHcCCCH
Confidence 33 34455543221111 0 0001 1223456777765443322211 111111 1222333323334 3
Q ss_pred chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHH
Q 016266 284 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL 330 (392)
Q Consensus 284 s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~ 330 (392)
.+.+...+..+++.++++++.|++.||+|+|+. +..+.++..++.+
T Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~ 284 (392)
T PRK10473 239 GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL-MLTSQVLFLAAGI 284 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHH
Confidence 467788888999999999999999999998875 4456655555543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=181.53 Aligned_cols=340 Identities=13% Similarity=0.042 Sum_probs=191.1
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHhHHHhHhhhccC-CCchhHHHHHHHHHHhhhhhhHHHHHHhh-----chhHHH-
Q 016266 20 VLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGILYTSFTCFSLVASLVVRVL-----GSKNAL- 92 (392)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~~~~~~~~~~v~~~~~g~l~dr~-----G~r~~l- 92 (392)
|.||.+++|.+.++.+++..-.......+.+...+.++ .+.+.+..........+++++.|+++||+ |||+.+
T Consensus 5 ~l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~l 84 (491)
T PRK11010 5 YLRIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWL 84 (491)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHH
Confidence 56777777776666665544443333333333333322 23333222111222226789999999999 999974
Q ss_pred HHhhhHHHHHHHh-hh---chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH
Q 016266 93 ILGTTGYWLFVAA-NL---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS 168 (392)
Q Consensus 93 ~~g~~~~~l~~~~-~~---~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~ 168 (392)
..+.++.++.... .+ .++++.+.+.+++.|++.+...+...++.+|+. |+||||++.++...+..+
T Consensus 85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~----------~~~~rg~~~~i~~~g~~l 154 (491)
T PRK11010 85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL----------PAEERGAGAAISVLGYRL 154 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ChhhhHHHHHHHHHHHHH
Confidence 4555555444332 22 246777888999999999998888888888886 778999999999999999
Q ss_pred hhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhcc
Q 016266 169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLAD 248 (392)
Q Consensus 169 g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (392)
|.++|+.+...+..+ ..|||.. |.+.+++.++..+..+++||+++..+++ + ..+++..+ +..+.+++
T Consensus 155 G~llg~~l~~~l~~~----~~GWr~~-f~i~a~l~ll~~l~~~~~~e~~~~~~~~--~---~~~~~~~~---~l~~~~~~ 221 (491)
T PRK11010 155 AMLVSGGLALWLADR----YLGWQGM-YWLMAALLIPCIIATLLAPEPTDTIPVP--K---TLEQAVVA---PLRDFFGR 221 (491)
T ss_pred HHHHHHHHHHHHHhc----ccCHHHH-HHHHHHHHHHHHHHHHhcCCCccccccc--c---chhhhHHH---HHHHHHcC
Confidence 999998877766542 1479875 5555555555544445566643221111 0 00111112 22345566
Q ss_pred chhHHHHHHHHhhhHHhhhhhcccchhhhc-cccccchhhHHHH-HHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHH
Q 016266 249 VRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMA-VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV 326 (392)
Q Consensus 249 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~-~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~ 326 (392)
++.+....................++.+.+ .+++.++.+.+.. ...++.++|.+++|+++||+|+|+.++ ++.++..
T Consensus 222 ~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~-i~~~l~~ 300 (491)
T PRK11010 222 NNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM-IFGILQG 300 (491)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 666544332222222111111222333222 2344456777764 445789999999999999999887544 3343333
Q ss_pred HHHHHHH-hccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhhh
Q 016266 327 VVFLWIL-INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLIR 387 (392)
Q Consensus 327 i~~~~~~-~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~~ 387 (392)
+..+... +....++ ...+.+..++..++.+...+...++..++.+++ .+++++.++.
T Consensus 301 l~~l~~~~l~~~~~~----~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s 359 (491)
T PRK11010 301 VSNAGYWLLSITDKN----LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSA 359 (491)
T ss_pred HHHHHHHHHHhcccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3322111 1122211 223333444444444444455567777777653 3556665543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=183.15 Aligned_cols=341 Identities=13% Similarity=0.066 Sum_probs=189.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCch----hHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.++.+..+.++.++....+.....+.+.+..+.+.+ ....+.....+.+++++.|+++||+|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3445555566665555444444444444443332222 233455566677888999999999999999999988777
Q ss_pred HHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 101 LFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 101 l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
+.... .+.+++..+++.|++.|++.+..++....++.++. |+|+|++++++.....++|..+|+.+...
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----------PKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 46788999999999999999998888888888876 78899999999999899999999988876
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhh--------HHHHHHH------HHHh
Q 016266 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSY--------LVSLSKS------ITTL 245 (392)
Q Consensus 180 ~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~ 245 (392)
+.++ .+||.. |.+..+..++..+....++++++.+++++.+.+..+..+ ....... ....
T Consensus 167 l~~~-----~~w~~~-f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (496)
T PRK03893 167 VVPV-----WGWRAL-FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFC 240 (496)
T ss_pred Hhcc-----CCHHHH-HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 6543 478874 333222111111111122222111111000000000000 0000000 0000
Q ss_pred hcc--chhHHHH----------------------------HHHHhhhHHhhhhhcccchhhhccc--cccchhhHHHHHH
Q 016266 246 LAD--VRMLLII----------------------------PLFAYSGLQQAFVWAEFTKEIVTPA--LGVSGVGGAMAVY 293 (392)
Q Consensus 246 ~~~--~~~~~l~----------------------------~~~~~~g~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~ 293 (392)
+.. ++.+... ....+..+...+....+.|.+.++. .+..+++.+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~ 320 (496)
T PRK03893 241 FAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFS 320 (496)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 000 0000000 0000000000000112334444333 3445788889999
Q ss_pred hHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 016266 294 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373 (392)
Q Consensus 294 gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~ 373 (392)
+++.++++++.|+++||+|+|+.. ..+.++..+..+++ ...++.. .+...+..++.+.......+..++++.+.
T Consensus 321 ~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (496)
T PRK03893 321 GFGAAVGCCVGGFLGDWLGTRKAY-VCSLLISQLLIIPV--FAIGGAN---VWVLGLLLFFQQMLGQGISGLLPKLIGGY 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHH--hhccccH---HHHHHHHHHHHHHHhcccchhhHHHHHhh
Confidence 999999999999999999988754 34444443332221 1222211 12333333334443334456778889999
Q ss_pred ccC-Cccccchhhhh
Q 016266 374 FKH-DTVTANPTLIR 387 (392)
Q Consensus 374 ~p~-~~~~a~~~~~~ 387 (392)
+|+ +++.+++.++.
T Consensus 395 ~~~~~~g~~~~~~~~ 409 (496)
T PRK03893 395 FDTEQRAAGLGFTYN 409 (496)
T ss_pred CCHHHhhcccchhhh
Confidence 985 56778876543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=178.79 Aligned_cols=285 Identities=12% Similarity=0.084 Sum_probs=176.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
..+.....+.+++++.|++.||+|||+++.++.++.++.......+++..++..|++.|++.+...+....++.++
T Consensus 40 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~---- 115 (355)
T TIGR00896 40 LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLLPSLIKRD---- 115 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccchHHHHHh----
Confidence 3556666778889999999999999999999987766655443567788888999999999998777666666554
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKE 223 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (392)
.+++|++++|++..+.+.|..+|+.+...+.++.. .+||.. |....++.++.. ...+++.+++++++
T Consensus 116 -------~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~---~~w~~~-f~~~~~~~~~~~--~~~~~~~~~~~~~~ 182 (355)
T TIGR00896 116 -------FPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG---GHWQQA-LAWWALPALLAL--LAWIPQVRRRVAAN 182 (355)
T ss_pred -------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHH-HHHHHHHHHHHH--HHHhhhhccccCCC
Confidence 34689999999998888999998887766654321 237764 333333222221 12233221111111
Q ss_pred cccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhh-ccccccchhhHHHHHHhHHHHHHHh
Q 016266 224 TADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSL 302 (392)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~ 302 (392)
+. .+. +...+.+|||+++................ ..+.|.+. +.+.+.++.+.+.+.++++.+++++
T Consensus 183 ~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~ 250 (355)
T TIGR00896 183 QT----TTR-------LTPVRIWRSPLAWQVTVFFGLQSGLYYSL-IGWLPAILISHGASAATAGSLLALMQLAQAASAL 250 (355)
T ss_pred CC----CCC-------CCCchhhcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 01124567777765443322211111111 12233333 2234445778889999999999999
Q ss_pred hhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC--Cccc
Q 016266 303 AAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH--DTVT 380 (392)
Q Consensus 303 ~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~--~~~~ 380 (392)
+.|++.||+++|+..+..+.++..++.+. +.+.++. ... ...+++|++.+...+...+.+.+..++ +++.
T Consensus 251 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~ 322 (355)
T TIGR00896 251 LIPALARRVKDQRGIVAVLAVLQLVGLCG--LLFAPMH-----GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAA 322 (355)
T ss_pred hHHHHHhhhccchHHHHHHHHHHHHHHHH--HHHhhhh-----HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHH
Confidence 99999999965544444555555555432 2343332 121 245678999988888888888776653 2344
Q ss_pred cchhh
Q 016266 381 ANPTL 385 (392)
Q Consensus 381 a~~~~ 385 (392)
+.+..
T Consensus 323 ~~~~~ 327 (355)
T TIGR00896 323 LSAMA 327 (355)
T ss_pred HHHHH
Confidence 55543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=178.01 Aligned_cols=325 Identities=15% Similarity=0.102 Sum_probs=200.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHh-HhhhccCCCchhHH----HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNL-ETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~~g~~~----~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
+.+|+...+.++.++...++...... ...+.++.+.+... .+.......+++++.|+++||+|||+++.++.++.
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~ 83 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF 83 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence 34466666666666666665544433 23333333433332 33344456677899999999999999999998877
Q ss_pred HHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhh
Q 016266 100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL 178 (392)
Q Consensus 100 ~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~ 178 (392)
.+.... .+.++++.+++.|.+.|.+.+...+....+..+.. |+++|++++|+.....++|..+|+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNL----------SSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544 36778888788888888877766666666555554 6789999999999999999999999888
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHH
Q 016266 179 AVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL 257 (392)
Q Consensus 179 ~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (392)
.+.. .+|+.. |.+.+++.+++.+.. +++++++++++++ +++. ++..+.++||+++.....
T Consensus 154 ~l~~------~g~~~~-f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~ 214 (395)
T PRK10054 154 LLVM------QSINLP-FWLAAICSAFPLVFIQIWVQRSEKAIATE-------TGSV-----WSPSVLLQDKALLWFTCS 214 (395)
T ss_pred HHHH------hccCcH-HHHHHHHHHHHHHHHHHHHhccccccccc-------hhhh-----hhhhhhccCceehHHHHH
Confidence 7653 257764 555555555544333 3344332211111 0000 112356788888765543
Q ss_pred HHhhhHHhh-h--hhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHh
Q 016266 258 FAYSGLQQA-F--VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI 334 (392)
Q Consensus 258 ~~~~g~~~~-~--~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~ 334 (392)
.+....... + ....|.+...+.+.+....+.+....++.........|++.||.++|+. +..+..+..+++...
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-l~~~~~~~~~~~~~~-- 291 (395)
T PRK10054 215 GFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-MTAGTLCFVIGLVGF-- 291 (395)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-HHHHHHHHHHHHHHH--
Confidence 332221111 1 1122322221112222345666777777777778889999999988874 445665565554322
Q ss_pred ccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhh
Q 016266 335 NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTL 385 (392)
Q Consensus 335 ~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~ 385 (392)
....++ .+...+..+++|++.+...|..++.+.+..|++. +.+++.+
T Consensus 292 ~~~~~~----~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 339 (395)
T PRK10054 292 IFSGNS----LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ 339 (395)
T ss_pred HHcchH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence 222221 2445667789999998888888999999998644 5565543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=186.95 Aligned_cols=299 Identities=11% Similarity=-0.057 Sum_probs=178.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh---hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
.+.++..+.+++++.|++.||+|||+++..+.++.++..... ..+++..+++.|+++|++.+..++....+++++.
T Consensus 82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~- 160 (465)
T TIGR00894 82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWA- 160 (465)
T ss_pred HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcC-
Confidence 345556778889999999999999999999988877665442 2345777889999999999999999889988886
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccc-
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDK- 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~- 219 (392)
|+++||+++|+...+..+|..+|+.+...+.... .+||.. |.+.+++.++..++. .+.+|+++.
T Consensus 161 ---------~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~----~gw~~~-f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 161 ---------PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW----GGWPMI-FYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCee-hhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 7889999999999999999999998887665431 268875 555555544433333 334432221
Q ss_pred cccccccc--------cchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccc--ccchhhHH
Q 016266 220 GEKETADA--------SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL--GVSGVGGA 289 (392)
Q Consensus 220 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--g~s~~~~~ 289 (392)
+++++.+. +.+++.+.+ ....+.+++++++......+....... ....+.|.+..+.. +..+.++.
T Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~~l~~~~g~s~~~~g~~ 302 (465)
T TIGR00894 227 PCISKFEKKYINSSLQGQKGSTRQS---LPIKAIPKSLPVWAIWFAIFGHFWLYT-ILPTYLPTFISWVLRVSGKENGLL 302 (465)
T ss_pred CCCCHHHHHHHHhhcccccCCCCCC---CCHHHHhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcChHHhHHH
Confidence 11100000 000000000 112356778877766544332222111 11234444443333 34567888
Q ss_pred HHHHhHHHHHHHhhhhhhccCCCCchhh-------HHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 290 MAVYGAFDAICSLAAGRLTTGLPSITFI-------VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 290 ~~~~gi~~~~g~~~~G~lsd~~g~r~~~-------~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
.++..++..++.++.|+++||+++|+.. +..+......+..........+. .....++..+.+.+.+..
T Consensus 303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 378 (465)
T TIGR00894 303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA----FYLTIIILTLANAVSSGP 378 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHhhhh
Confidence 8888999999999999999987644211 11111111111111111121221 223333444555555555
Q ss_pred hhHHHHHHHhhccCCccccchhhh
Q 016266 363 NTQLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 363 ~~~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
.+.......|..|+..+.+.+..+
T Consensus 379 ~~~~~~~~~~~~~~~~g~~~g~~~ 402 (465)
T TIGR00894 379 LAGVLINSLDLAPRFLGFIKGITG 402 (465)
T ss_pred hhhhhhchhhcChhHHHHHHHHHH
Confidence 555556666777776666666543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-19 Score=174.07 Aligned_cols=288 Identities=11% Similarity=0.039 Sum_probs=184.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh----hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~----~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
.+..+..+.+++++.|++.||+|||+++.++..++++..... ..++++.++..|++.|+|.|...++...++.+..
T Consensus 44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~ 123 (410)
T TIGR00885 44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG 123 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence 455666778889999999999999999999998877665432 2467888899999999999999999888888876
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC---------------------CCCCcchhHHHHH
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---------------------GSTSGTTLLFIVF 199 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~---------------------~~~~wr~~~f~i~ 199 (392)
|+++|++++++.+...++|..+|+.++..+...... ...+||.+ |.+.
T Consensus 124 ----------~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-fl~~ 192 (410)
T TIGR00885 124 ----------PESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTP-YMII 192 (410)
T ss_pred ----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHH-HHHH
Confidence 778899999999999999999999887766432100 01358775 4444
Q ss_pred HHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHH-HHHhhhHHhhhhhcccchhhhc
Q 016266 200 LGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWAEFTKEIVT 278 (392)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~~~~~~~~~~~~~ 278 (392)
+++.++..++..+.+.|+.++ +++ + +.+.++. ..+.+|+|+++.... .+++.+.+...+ +.+.+...+
T Consensus 193 a~~~~~~~~~~~~~~~p~~~~-~~~-~-----~~~~~~~---~~~~~~~~~~~~~~l~~f~yvg~e~~~~-s~l~~y~~~ 261 (410)
T TIGR00885 193 GAVVLAVALLIMLTKMPALNH-SDA-K-----QISFSAS---LSRLARIRHYREGVIAQFFYVGVQIMCW-TFIIQYAVR 261 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCc-ccc-c-----cccchhh---HHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 444333322222333332111 110 0 0111111 124567777766433 444566554432 222222221
Q ss_pred cccccc--hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHh
Q 016266 279 PALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG 356 (392)
Q Consensus 279 ~~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G 356 (392)
...+.+ ..+.....+..+..+|++++|++.||+++|+.+ .+..+...+..++ ..+.++ .....+.++.|
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l-~i~~~~~~~~~ll--~~~~~~------~~~~~~l~~~g 332 (410)
T TIGR00885 262 LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL-MAYAIIGMALCLG--SIFAGG------HVGLYCLTLCS 332 (410)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHHHHH--HHHcCC------hHHHHHHHHHH
Confidence 112222 234445556677899999999999999988754 3445444444332 233333 23345556777
Q ss_pred hhhhhhhhHHHHHHHhhccCCccccch
Q 016266 357 IGDGVLNTQLSALLGILFKHDTVTANP 383 (392)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~p~~~~~a~~ 383 (392)
++.+...|..+++..+..+++..++.+
T Consensus 333 lf~s~~fp~i~sl~~~~~g~~~~~~s~ 359 (410)
T TIGR00885 333 AFMSLMFPTIYGIALKGLGQDTKYGAA 359 (410)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 888888899999999999877655433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=171.55 Aligned_cols=290 Identities=11% Similarity=0.087 Sum_probs=175.7
Q ss_pred hhhhHHHHHHhh-----chhHHH-HHhhhHHHHHHHh-hhc---hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 75 FSLVASLVVRVL-----GSKNAL-ILGTTGYWLFVAA-NLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 75 ~~~~~g~l~dr~-----G~r~~l-~~g~~~~~l~~~~-~~~---~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
.+++.|+++||+ ||||.+ +.+.+..++.... .+. .+...+...+++.+.+.+...++..++++|+.
T Consensus 37 ~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~---- 112 (356)
T TIGR00901 37 LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEIL---- 112 (356)
T ss_pred HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 388999999998 899985 4555555544332 233 34555666777888888888888888888886
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC---CCCCcchhHHHHHHHHHHHHHHHHHh-ccCCcccc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGVITLGTILMCF-LRKEEDKG 220 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~---~~~~wr~~~f~i~~~~~~~~~~~~~~-~~~~~~~~ 220 (392)
|+|+|+++.|+...+...|.++|+.++..+..+... ...+||.. |.+.++..++..+..++ .||+++.+
T Consensus 113 ------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~-f~i~ai~~l~~~~~~~~~~~e~~~~~ 185 (356)
T TIGR00901 113 ------SDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI-FFWTALLILPGLLVTLFLAKEPQEDA 185 (356)
T ss_pred ------CHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH-HHHHHHHHHHHHHHHHHhccCCCccc
Confidence 789999999999999999999999888766543310 12348875 56656555554444333 34432211
Q ss_pred ccccccccchhhhhHHHHHHHHHHhhccch---hHHHHHHHHhhhHHhhhhhcccchhhhccccccchhhHHHHHHh-HH
Q 016266 221 EKETADASVNFYSYLVSLSKSITTLLADVR---MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG-AF 296 (392)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~g-i~ 296 (392)
+++ + .+.++.++.++ +.+++++ .+.+....+..........+.+++...+.+.+.++.+.+....+ ++
T Consensus 186 -~~~-~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~ 257 (356)
T TIGR00901 186 -SVP-K---PLTQAVLKPIR---EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLG 257 (356)
T ss_pred -ccc-h---hHHHHHHHHHH---HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHH
Confidence 110 0 01111222222 3455554 44333222222221111112222222222334456677776666 56
Q ss_pred HHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCC-------CccchHHHHHHHHHHhhhhhhhhhHHHHH
Q 016266 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS-------GVLGTLYPLIMAALLGIGDGVLNTQLSAL 369 (392)
Q Consensus 297 ~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~i~~~l~G~~~~~~~~~~~a~ 369 (392)
.+++.+++|++.||+|+|+.++ .+.++..+...+.. ...++. + ..+....+.++.+++.+..++...++
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 333 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALL-LFGIVQALTNAGFV-WLASNGHHDGITFP--HLLMLFLTITLEAVTGGLGTVAFVAF 333 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHH-HHHhcCcccccccc--hHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7899999999999999887644 45555544433211 111110 1 12456666778899999999999999
Q ss_pred HHhhccCCc-cccchhhhh
Q 016266 370 LGILFKHDT-VTANPTLIR 387 (392)
Q Consensus 370 ~~~~~p~~~-~~a~~~~~~ 387 (392)
+.+.+|++. ++.++.+++
T Consensus 334 ~~~~~p~~~~g~~~g~~~~ 352 (356)
T TIGR00901 334 LSKLSNPKFGATQMALLSS 352 (356)
T ss_pred HHHhcCCCccHHHHHHHHH
Confidence 999998644 667887654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=173.86 Aligned_cols=321 Identities=10% Similarity=-0.020 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHH----HHHHHHHHhhhhhhHHHHHHhhchhHH----HHHhhhHHH
Q 016266 29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNA----LILGTTGYW 100 (392)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~----~~~~~~~~~v~~~~~g~l~dr~G~r~~----l~~g~~~~~ 100 (392)
....+++.++..+.++.......+.+..+.+.+... .++......+++++.|+++||+|||+. +..+..++.
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA 84 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 334466677777766655555445544443433333 344455566788999999999998543 333322222
Q ss_pred HHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhh
Q 016266 101 LFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180 (392)
Q Consensus 101 l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~ 180 (392)
+. ....+++++.+++.|+++|.+.+...+...++..+ ++++|++++|......++|.++|+.++..+
T Consensus 85 ~~-~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~------------~~~~~~~~~g~~~~~~slG~~~g~~l~g~l 151 (382)
T TIGR00902 85 AA-FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT------------WQKQFGLDYGKVRLIGSAAFIIGSALFGGL 151 (382)
T ss_pred HH-HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH------------HHHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 21 11246788888889999999988877776665433 236889999999888999999999988877
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHh
Q 016266 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAY 260 (392)
Q Consensus 181 ~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (392)
.++ .|||.. |.+...+..+. +..+.++++.+++++++ +. +.++ .++..+.+|||+++......++
T Consensus 152 ~~~-----~g~~~~-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~---~~~~----~~~~~~~l~~~~~~~~l~~~~l 216 (382)
T TIGR00902 152 IGM-----FDEQNI-LAILTAGLAFM-LIGFLIKPTIPPKDAIP-ED---ESQG----DSAFIALLKNPMNLRFLAAVCL 216 (382)
T ss_pred HHH-----cChhHH-HHHHHHHHHHH-HHHHHcCCCCCCCcccc-cc---cccc----chhHHHHHcChHHHHHHHHHHH
Confidence 654 478875 43333322222 22233333211111110 00 0000 1223467889988776544333
Q ss_pred hhHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCC
Q 016266 261 SGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS 340 (392)
Q Consensus 261 ~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~ 340 (392)
.........+..++.+.+.+.+.+.++.+..+..++++++.++.|++.||+|+|+. +.++.+...+.... ....++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~~~~~~--~~~~~~- 292 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACVGRWAI--IGAIEA- 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHHHHHHH--HHhHhh-
Confidence 22222222233333333223344568888888999999999999999999998875 45677777766443 334443
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhh
Q 016266 341 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 341 ~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.+.+++..++.|++.+...+....++.+. |+ +++.+++.|+
T Consensus 293 ----~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~ 334 (382)
T TIGR00902 293 ----FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN 334 (382)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence 36677788999999999999999999988 64 5566777775
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=196.88 Aligned_cols=300 Identities=15% Similarity=0.125 Sum_probs=189.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
.+++...+.++++++|+++||+|||++++++.++..+..+. ...++++.+++.|+++|++.+...++..++++++.
T Consensus 53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 132 (1146)
T PRK08633 53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELV 132 (1146)
T ss_pred HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhc
Confidence 45555667788999999999999999999887665443322 23467888999999999999999999889999886
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC----CCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD----KGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~----~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
|+++|++++|+...+..+|.++|++++..+.... .....+|++..+++.....++++++.+.+++.
T Consensus 133 ----------~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1146)
T PRK08633 133 ----------GKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKV 202 (1146)
T ss_pred ----------CcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 7889999999999999999999999988776531 00011233322222222222333333444543
Q ss_pred ccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cc-hhhHHHHHH
Q 016266 217 EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VS-GVGGAMAVY 293 (392)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s-~~~~~~~~~ 293 (392)
++...+...+. +....++..+.....++++.++...................+ +.+..+.+| .. ..+++.+..
T Consensus 203 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~g~~~~~~ 278 (1146)
T PRK08633 203 PAAAPEVFDKK---KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANF-PAYAKEVLGLDNTFQVQYLLAAS 278 (1146)
T ss_pred CCCCccccccc---ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhCCCcHHHHHHHHHHH
Confidence 22111110000 000111111223345667766654433222211111111222 233322233 34 668888999
Q ss_pred hHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 016266 294 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373 (392)
Q Consensus 294 gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~ 373 (392)
+++.++++++.|+++||+++++.+ .++.++.+++.++ +.+.++ .+..++..+++|++.++..+..++++.+.
T Consensus 279 ~ig~~~g~~~~g~l~~r~~~~~~~-~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 350 (1146)
T PRK08633 279 AIGIGIGSLLAGRLSGRHIELGLV-PLGALGLALSLFL--LPTAPS-----LASVLVLFFLFGFSAGLFIVPLNALIQFR 350 (1146)
T ss_pred HHHHHHHHHHHHHHhCCceEccch-hHHHHHHHHHHHH--HHHhhh-----HHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 999999999999999999887644 4555555555332 233333 35666777889999999999999999999
Q ss_pred ccC-Cccccchhhh
Q 016266 374 FKH-DTVTANPTLI 386 (392)
Q Consensus 374 ~p~-~~~~a~~~~~ 386 (392)
.|+ .++.+++.++
T Consensus 351 ~p~~~rg~~~~~~~ 364 (1146)
T PRK08633 351 APEKELGKVLAANN 364 (1146)
T ss_pred CCccchhhhhHHHH
Confidence 875 4577777654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=186.20 Aligned_cols=246 Identities=16% Similarity=0.129 Sum_probs=175.7
Q ss_pred hhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHh
Q 016266 52 TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWV 130 (392)
Q Consensus 52 ~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~ 130 (392)
++++...+.-+...++++..|++++++++.|.||++..+.+....++++++.+. ....|++.+++.|+++|+.++..||
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 333333333345578899999999999999999999999999999888887754 4678999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC-CCCCcchhHHHHHHHHHHH-HHH
Q 016266 131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG-GSTSGTTLLFIVFLGVITL-GTI 208 (392)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~-~~~~wr~~~f~i~~~~~~~-~~~ 208 (392)
+...++..|. .++|||+.+|++++..++|+++|+++++.+.++.+. +..|||+. |++.+++++. +++
T Consensus 154 ~~~~~lg~wy----------~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~-FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 154 GVVAILGNWY----------GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWL-FIIEGVITLVLGIV 222 (495)
T ss_pred HHHHHHHhhc----------ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceee-hhHHHHHHHHHHhe
Confidence 9999998887 668999999999999999999999999987653332 34689985 7776666664 444
Q ss_pred HHHhccCCccc----cccc------ccccc--chhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhh
Q 016266 209 LMCFLRKEEDK----GEKE------TADAS--VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI 276 (392)
Q Consensus 209 ~~~~~~~~~~~----~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 276 (392)
.++++|+.+.. +++| +.+++ ....++ ...+...+++++|++|...+..++........ ..+.|.+
T Consensus 223 ~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~-~~~lpl~ 299 (495)
T KOG2533|consen 223 VFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK--FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGF-SYWLPLY 299 (495)
T ss_pred EEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc--cCHHHHHHHHhchhHHHHHHHHHHHhhccccH-HHHHHHH
Confidence 55666653321 1111 00000 000011 12345668899999998887766554432212 2334444
Q ss_pred hccc--cccchhhHHHHHHhHHHHHHHhhhhhhccCC
Q 016266 277 VTPA--LGVSGVGGAMAVYGAFDAICSLAAGRLTTGL 311 (392)
Q Consensus 277 ~~~~--~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~ 311 (392)
.++. ++..++..+.+.+.++++++.+++|.++||+
T Consensus 300 l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 300 LKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 4332 3334677788899999999999999999994
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=173.28 Aligned_cols=278 Identities=14% Similarity=0.011 Sum_probs=168.3
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhh-hHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGT-TGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~-~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
...+.+++.|+++||+||||.+.... ....+.... ..+++++.+++.|+++|.+.+...+...++..++.
T Consensus 45 ~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~-------- 116 (375)
T TIGR00899 45 VGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHA-------- 116 (375)
T ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh--------
Confidence 34567788999999999998866544 443444333 46788888888999998887777776666666654
Q ss_pred CCccchhhhh--HHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccccccccc
Q 016266 149 LHEGTVIGSF--NGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETA 225 (392)
Q Consensus 149 ~~~~~~rg~~--~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 225 (392)
|+++|++. .+......+.|..+|+.++..+.+. .+||.. |.+.+++.++..+.. +++||++++++++
T Consensus 117 --~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 186 (375)
T TIGR00899 117 --DRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-----FGFTVM-FLTAALAFVLCGVLVWLFLPSYPRGAPGA-- 186 (375)
T ss_pred --hhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-----cccHHH-HHHHHHHHHHHHHHHHHhCCCcccCcccc--
Confidence 44455543 5777777788899998888776543 468874 555555544444433 3455533211111
Q ss_pred cccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHHHHhh
Q 016266 226 DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICSLA 303 (392)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~g~~~ 303 (392)
+ ++. +.+ +.+++++++.+....+........... +.+.+..+ +.+.++.+.+.....+...++.++
T Consensus 187 ~----~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 254 (375)
T TIGR00899 187 L----TRL----EVR---GLLASRDTRLLFVACTLMWGCNILYII-NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLL 254 (375)
T ss_pred c----Ccc----hhh---hhhcCcchHHHHHHHHHHHHHHHHHHh-hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000 111 245566665443322211111111111 22223222 233445677766666777888999
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccch
Q 016266 304 AGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANP 383 (392)
Q Consensus 304 ~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~ 383 (392)
.|++.||+|+|+.+ ..+.+...+.... ....++ .+..++..++.|++.+...+..+++..|..|++++.+++
T Consensus 255 ~g~l~~r~g~~~~~-~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (375)
T TIGR00899 255 AGYLIKRFGKRRLM-LLAALAGVAFYTG--LAADNS-----LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATT 326 (375)
T ss_pred HHHHHHHhcchhHH-HHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 99999999988754 3444443333221 122222 245556667888888888888889999999988888888
Q ss_pred hhh
Q 016266 384 TLI 386 (392)
Q Consensus 384 ~~~ 386 (392)
.++
T Consensus 327 ~~~ 329 (375)
T TIGR00899 327 LYT 329 (375)
T ss_pred HHH
Confidence 765
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=173.93 Aligned_cols=329 Identities=13% Similarity=0.099 Sum_probs=207.9
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHHH----HhhhhhhHHHHHHhhchhHHHHHhh
Q 016266 21 LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTS----FTCFSLVASLVVRVLGSKNALILGT 96 (392)
Q Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~----~~v~~~~~g~l~dr~G~r~~l~~g~ 96 (392)
.+++...+|++.-.+++...|..+...+.+...+..+.+++....+.+... -++.-++.|.+.||||.|++..++.
T Consensus 7 ~~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~ 86 (417)
T COG2223 7 RGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM 86 (417)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence 355567788888888888889998888888888776666665555444443 3445678999999999999999999
Q ss_pred hHHHHHHHh-h---hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhh
Q 016266 97 TGYWLFVAA-N---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV 172 (392)
Q Consensus 97 ~~~~l~~~~-~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~ 172 (392)
++..+-... . ..++++.+++.+.+.|++.+..-++ ..+++.+. |+|++|.++|++. ..++|..+
T Consensus 87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~-m~~~s~~f----------P~~~qG~AlGI~g-~GN~G~av 154 (417)
T COG2223 87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVG-MPNASFFF----------PKEKQGLALGIAG-AGNLGVAV 154 (417)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcc-cccccccC----------ChhhhhHHHHHhc-cccccHHH
Confidence 886654432 2 3466678999999999998776443 45555554 8899999999988 67777666
Q ss_pred hhHhhhhhccCCCCCCCC---cchhHHHHHHHHHHHHHHHH-HhccCCccccccccccccchhhhhHHHHHHHHHHhhcc
Q 016266 173 GNLITLAVLKDDKGGSTS---GTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLAD 248 (392)
Q Consensus 173 G~~i~~~~~~~~~~~~~~---wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (392)
..+++..+... .+ |+.. ..++.+..++..+.+ +..+|.++.+ ++.+ +.. ..+ ...+.+|
T Consensus 155 ~q~~~P~v~~~-----~g~~~w~~~-~~i~~~~l~v~~v~~~~~~~d~p~~r-~~~~-----~~~--~~~---~~~v~~~ 217 (417)
T COG2223 155 AQLVAPLVAVA-----FGFLAWRNV-AGIYVVALAIAAVLAWLGMNDVPEHR-ASVK-----PQL--PAQ---LKAVFSN 217 (417)
T ss_pred HHHHHHHHHHH-----HhhHHHHHH-HHHHHHHHHHHHHHHHHHhCCChhhh-cccc-----ccc--hhH---HHHHhcC
Confidence 66665555432 23 6654 455555555545444 4555533211 1100 000 022 2245678
Q ss_pred chhHHHHHHHHh-hhHHhhhhhcccchhhhccccccc--hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHH
Q 016266 249 VRMLLIIPLFAY-SGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ 325 (392)
Q Consensus 249 ~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~ 325 (392)
++.|.+...++. .|-..++ +.+.+.+.++.++.+ +++.....+...+.+.++++|+|+||+|.+|... .....+
T Consensus 218 ~~~W~lsllY~~tFG~Fvgf--s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~-~~f~~~ 294 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGF--SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL-AVFVGM 294 (417)
T ss_pred cchHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH-HHHHHH
Confidence 888887765442 2222222 233445554555654 5677888888899999999999999999887554 445555
Q ss_pred HHHHHHHHhccccCCC--ccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccch
Q 016266 326 VVVFLWILINYSVTSG--VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANP 383 (392)
Q Consensus 326 ~i~~~~~~~~~~~~~~--~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~ 383 (392)
+++... +...++.. ....+..+......+++.+.-+...+.++..++|++.+.+.+
T Consensus 295 ~~~~~~--l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G 352 (417)
T COG2223 295 ALAAAL--LSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTG 352 (417)
T ss_pred HHHHHH--HHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHH
Confidence 555433 23333110 001233333344444555555555778888888876665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=180.11 Aligned_cols=143 Identities=15% Similarity=0.030 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchh------hHHHHHHHHHHhhhHHHHHhhhhHHHH
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVGEGTYLT 137 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~ 137 (392)
.+.......+++++.|+++||+|||+++.++.+++.+.... ...++ +..+++.|+++|++.|...+....|++
T Consensus 62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 141 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS 141 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44555567788999999999999999999998887766553 33343 678889999999999999999999999
Q ss_pred HHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC------------------CCCCCcchhHHHHH
Q 016266 138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK------------------GGSTSGTTLLFIVF 199 (392)
Q Consensus 138 ~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~------------------~~~~~wr~~~f~i~ 199 (392)
|+. |+|+||+++++......+|..+|+.++..+..... ....+||.. +.+.
T Consensus 142 e~~----------p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~-~~~~ 210 (502)
T TIGR00887 142 EFA----------TKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL-IGFG 210 (502)
T ss_pred Hhc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH-HHHH
Confidence 997 88999999999998889999888887765432110 012479874 4444
Q ss_pred HHHHHHHHHHHHhccCCcc
Q 016266 200 LGVITLGTILMCFLRKEED 218 (392)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (392)
.+..++..+..+++||+++
T Consensus 211 ~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 4444444444466777643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=172.42 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=185.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+.......+++++.|+++||+|||+.+..+..+..+.... ...+++..+++.|++.|++.+..++....++.|+.
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--- 116 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF--- 116 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhC---
Confidence 44455556788899999999999999999999887776654 35688889999999999999999999888888886
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKE 223 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (392)
|+|+|++.+++.......|..+|+.++..+.+.. +||.. +.+..+..++..+...+++
T Consensus 117 -------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~--------- 174 (352)
T cd06174 117 -------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-----GWRWL-FLILAILGLLLALLLLFLL--------- 174 (352)
T ss_pred -------CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHH-HHHHHHHHHHHHHHHHHHH---------
Confidence 7789999999999999999999999888776542 47764 4444444444433332222
Q ss_pred cccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHHHH
Q 016266 224 TADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
|+++......+......... ..+.+.+..+ +.+..+.+......+++..+++
T Consensus 175 -------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 228 (352)
T cd06174 175 -------------------------RLLLLLALAFFLLSFGYYGL-LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA 228 (352)
T ss_pred -------------------------HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 12222221111111111111 1122222222 2344567888899999999999
Q ss_pred hhhhhhccCCCCch-hhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhcc-CCcc
Q 016266 302 LAAGRLTTGLPSIT-FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK-HDTV 379 (392)
Q Consensus 302 ~~~G~lsd~~g~r~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p-~~~~ 379 (392)
++.|++.||+++|+ .+ ..+..+..++.+. ....++ .+..++..++.|++.+...+..++++.|..| ++++
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T cd06174 229 LLGGLLSDRLGRRRLLL-LIGLLLAALGLLL--LALAPS-----LALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300 (352)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence 99999999999887 44 4566666665443 223333 3567788889999999999999999999998 5667
Q ss_pred ccchhhh
Q 016266 380 TANPTLI 386 (392)
Q Consensus 380 ~a~~~~~ 386 (392)
.+++.++
T Consensus 301 ~~~~~~~ 307 (352)
T cd06174 301 TASGLFN 307 (352)
T ss_pred HHHHHHH
Confidence 7777654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-19 Score=193.14 Aligned_cols=298 Identities=16% Similarity=0.077 Sum_probs=190.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhh---hHHHHHH-HhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGT---TGYWLFV-AANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~---~~~~l~~-~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
..+++...+.++++++|.++||+|||+++.... +...+.. .+...++++.+++.|+++|++.+..+++..+++.++
T Consensus 57 ~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~ 136 (1140)
T PRK06814 57 AGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDH 136 (1140)
T ss_pred HHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhh
Confidence 345566677889999999999999999864322 2222222 223447899999999999999999999999998888
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK 219 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~ 219 (392)
. |+++|++++|+..++.++|.++|+++++.+... .+|+.. |+...+..+++.++.++++++.+.
T Consensus 137 ~----------~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 137 L----------NKDELLGANALVEAGTFIAILLGTIIGGLATIS-----GNFVIL-VALLMGIAVLGWLASLFIPKTGNA 200 (1140)
T ss_pred c----------CccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHH-HHHHHHHHHHHHHHHhhCCCCCCC
Confidence 6 788999999999999999999999999888753 367763 333333333333344455543221
Q ss_pred cccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHH
Q 016266 220 GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFD 297 (392)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~ 297 (392)
..+...+ .....+.........+++.++..........+....... +.|.+..+.++ ....+.+.+.++++.
T Consensus 201 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~~~g~~~~~~~~g~ 274 (1140)
T PRK06814 201 APDLKID-----RNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLS-QLPLLAKETLGGDENVATLFLAVFSVGV 274 (1140)
T ss_pred CCCCeec-----cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 1111000 001111112233456777777665543333222222212 22333333333 456788899999999
Q ss_pred HHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhc-----------------cccCCCccchHHHHHHHHHHhhhhh
Q 016266 298 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN-----------------YSVTSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 298 ~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~-----------------~~~~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
++|+++.|+++|+..+++.+. .+.++..++.+.+.+. +...+ .+.+++..+++|++.+
T Consensus 275 ~ig~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~ 349 (1140)
T PRK06814 275 AVGSFLASKLSEGRITLLYVP-IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH----GWRILIDLFGLAAAGG 349 (1140)
T ss_pred HHHHHHHHHHhCCceeeeeeh-HHHHHHHHHHHHHHhcccccccccccccchhhhhcccc----cHHHHHHHHHHHHHHH
Confidence 999999999998877665433 3433333332211111 00011 3556677788999999
Q ss_pred hhhhHHHHHHHhhccC-Cccccchhhhhh
Q 016266 361 VLNTQLSALLGILFKH-DTVTANPTLIRQ 388 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~-~~~~a~~~~~~~ 388 (392)
..++..++++.+..|+ .++.++|.++..
T Consensus 350 ~~~~~~~~~~~~~~p~~~~G~v~g~~~~~ 378 (1140)
T PRK06814 350 LYIVPLFAALQAWANPAHRARVIAANNVL 378 (1140)
T ss_pred HhHHHHHHHHHhhCCcccceeeeHHHHHH
Confidence 9999999999999975 557888877653
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=184.42 Aligned_cols=295 Identities=14% Similarity=0.036 Sum_probs=185.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..++++..+.+++++.|+++||+|||+++.++.++..++.+. .++++++.+++.|++.|++.+...+....++.|+.
T Consensus 132 ~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~-- 209 (505)
T TIGR00898 132 TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL-- 209 (505)
T ss_pred HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheec--
Confidence 356667777889999999999999999999998887776654 47899999999999999999999998888888876
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc---
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK--- 219 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~--- 219 (392)
|+++|+++.++...+...|.+++++++..+. +||.. +.+.++..++..+..++++|+++.
T Consensus 210 --------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------~wr~~-~~~~~i~~~~~~~~~~~~~esp~~l~~ 272 (505)
T TIGR00898 210 --------PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------DWRWL-QLAVSLPTFLFFLLSWFVPESPRWLIS 272 (505)
T ss_pred --------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 7889999999988888888888887765542 38874 555555555555555666664321
Q ss_pred -ccccccc---------c--cchh-------hhhHHHHH--HHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc
Q 016266 220 -GEKETAD---------A--SVNF-------YSYLVSLS--KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT 278 (392)
Q Consensus 220 -~~~~~~~---------~--~~~~-------~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 278 (392)
.+.++.+ + +..+ +++..+.. ....+.+++|+++..........+...+. .+...+..
T Consensus 273 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 350 (505)
T TIGR00898 273 QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS--YYGLVLDL 350 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH--HHHHhccc
Confidence 0000000 0 0000 00000000 12235667777765443322111111111 11111111
Q ss_pred cccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhh
Q 016266 279 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG 358 (392)
Q Consensus 279 ~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~ 358 (392)
...+.+ ........++..+++.++.+++.||+|||+.+ .++.++..++.+.. .+.++.. .+...+..++.+++
T Consensus 351 ~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~-~~~~~~~~~~~l~~--~~~~~~~---~~~~~~~~~~~~~~ 423 (505)
T TIGR00898 351 GNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTM-AASLLLAGVALLLL--LFVPVDL---YFLRTALAVLGKFG 423 (505)
T ss_pred cccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHH--HHcCCCc---hHHHHHHHHHHHHH
Confidence 112222 22334566788899999999999999998754 45555555554332 2333321 13444555566677
Q ss_pred hhhhhhHHHHHHHhhccCC-ccccchhhh
Q 016266 359 DGVLNTQLSALLGILFKHD-TVTANPTLI 386 (392)
Q Consensus 359 ~~~~~~~~~a~~~~~~p~~-~~~a~~~~~ 386 (392)
.+...+..+++..|++|++ |+.+++..+
T Consensus 424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 452 (505)
T TIGR00898 424 ITSAFQMVYLYTAELYPTVVRNLGVGVCS 452 (505)
T ss_pred HHHHHHHHHHHhcccccHHHHhhhHhHHH
Confidence 7777788899999999864 566766554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-18 Score=162.14 Aligned_cols=295 Identities=14% Similarity=0.101 Sum_probs=194.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 63 ~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
...+.++.+|++++++.|.++||+|.|+++.++.+.+++..+. .++++...+.+.|++.|++.|+.+ +..+|+..|.
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf- 143 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLV- 143 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-
Confidence 3466777789999999999999999999999999999887776 477889999999999999999999 8889998886
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchh--HHHHHHHHHHHHHHHHHhccCCccc
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL--LFIVFLGVITLGTILMCFLRKEEDK 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~--~f~i~~~~~~~~~~~~~~~~~~~~~ 219 (392)
|++||+++.|+..++..+|.++|++++..+. .+|||.. +..+-.....++.++++++|.+++.
T Consensus 144 ---------P~kER~ratsi~~sg~~vG~~Ia~~L~qll~------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 144 ---------PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV------TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 8899999999999999999999988887733 2468762 2234444445666777888755431
Q ss_pred ----ccc--------c-ccc--c-c--ch--hh----hhHHHHHHHHHHhhccchhHHHHH--HHHhhhHHhhh--h---
Q 016266 220 ----GEK--------E-TAD--A-S--VN--FY----SYLVSLSKSITTLLADVRMLLIIP--LFAYSGLQQAF--V--- 268 (392)
Q Consensus 220 ----~~~--------~-~~~--~-~--~~--~~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~~--~--- 268 (392)
+++ + ++. . . .. .+ ...+...++.....+|++.+...+ .+..+|..+.. .
T Consensus 209 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~L 288 (511)
T TIGR00806 209 LFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTL 288 (511)
T ss_pred hhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 110 0 000 0 0 00 00 011222334455667777654332 22234443221 1
Q ss_pred hcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCch-hhHHHHHHHHHHHHHHHHhccccCCCccchHH
Q 016266 269 WAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT-FIVSGGAIAQVVVFLWILINYSVTSGVLGTLY 347 (392)
Q Consensus 269 ~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 347 (392)
+....|. ..+.-|.+-++.-+.+.+.++..|++..+..+-. ..+.+...+.... ++++.+.++ .+.
T Consensus 289 W~~v~~~------~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gl--l~~m~~t~~-----Iw~ 355 (511)
T TIGR00806 289 WGTLDES------LNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGL--VFWMSQSHD-----IWV 355 (511)
T ss_pred HHHcCCC------ccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH--hhhhhcccc-----hHH
Confidence 1111111 0113455556666677888999999866553211 1222222333322 223456665 588
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhhhh
Q 016266 348 PLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTLIR 387 (392)
Q Consensus 348 ~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~~~ 387 (392)
.++..++++.......|...+-++....+++ +-.+|.+++
T Consensus 356 ~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtf 396 (511)
T TIGR00806 356 LYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTF 396 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHH
Confidence 9999999999999999999988887776555 778887654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=170.70 Aligned_cols=286 Identities=11% Similarity=-0.037 Sum_probs=176.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchh----HHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSK----NALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r----~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
.++......+++++.|++.||+||| +.+.++..+..+ ......++++.+++.|.+.|++.+..++...++..++
T Consensus 45 ~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~- 122 (382)
T PRK11128 45 LGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW- 122 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-
Confidence 3444445567789999999999984 333333222211 1122457888888899999999888888766655544
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccc
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG 220 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
+++|++++|......++|..+|++++..+..+ .|||.. |++.++..++..+..++.++++++.
T Consensus 123 -----------~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
T PRK11128 123 -----------QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-----FGEQAI-LWILTAGVASMLLGQLLRPTIMPQG 185 (382)
T ss_pred -----------HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-----cChhHH-HHHHHHHHHHHHHHHHccCCCCCcc
Confidence 24678888888778889999999999887654 368875 4444443333333223333322111
Q ss_pred ccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHH
Q 016266 221 EKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIC 300 (392)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g 300 (392)
+++ + + .++.. ++..+.+|||+++......+..+..........++...+.+.+..+.+.+..+..++.++.
T Consensus 186 ~~~--~-~---~~~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 256 (382)
T PRK11128 186 ESR--Q-Q---ESAGW---PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLI 256 (382)
T ss_pred ccc--c-c---ccccc---chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHH
Confidence 111 0 0 00001 1233577888887655433322222111112222222222333446788888888899999
Q ss_pred HhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccc
Q 016266 301 SLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVT 380 (392)
Q Consensus 301 ~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~ 380 (392)
.++.|++.||+++|+. +..+.+...+..+. ..+.++ .+..++..+++|++.+...+....++.+..+++.+.
T Consensus 257 ~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 328 (382)
T PRK11128 257 FAFSNRLFRRWSARDL-LLLSAICGVVRWGL--MGSTTA-----LPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIR 328 (382)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHHH--HHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHH
Confidence 9999999999998875 44566666655432 234433 356777888999999988999999888876666666
Q ss_pred cchhhh
Q 016266 381 ANPTLI 386 (392)
Q Consensus 381 a~~~~~ 386 (392)
+++.++
T Consensus 329 ~~~~~~ 334 (382)
T PRK11128 329 LQALYS 334 (382)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=168.53 Aligned_cols=329 Identities=13% Similarity=0.074 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHH-HhHhhhccCCCchhH----HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQ-NLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~g~~----~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~ 102 (392)
++.+.+.+..++.+.++.... .+...+.++.+.+.. ..+.......+++++.|+++||+|||+++.++..+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 455555556666655544322 233333333333332 345555667788999999999999999998876654433
Q ss_pred HHhh----hchhhH-HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhh
Q 016266 103 VAAN----LFPSWY-TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177 (392)
Q Consensus 103 ~~~~----~~~~~~-~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~ 177 (392)
.... ..+.+. .......+.++..+..+........++.++ .++++|+.+|......++|..+|+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~i~~~~~ 161 (420)
T PRK09528 90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER--------VSRRSGFEYGRARMWGSLGWALCAFIA 161 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH--------HHhhccccchhhHHhhhHHHHHHHHHH
Confidence 2211 111111 011112233333333333322223333321 134678888887777888999999887
Q ss_pred hhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHH
Q 016266 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL 257 (392)
Q Consensus 178 ~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (392)
+.+.. .+|+.. |.+.+++.++..++.++.+++++++++++++.+.+++ +...++..+.+|||+++.+...
T Consensus 162 g~l~~------~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~l~ 231 (420)
T PRK09528 162 GILFN------INPQIN-FWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS---AVSLKDALALLKLPKFWFLVLY 231 (420)
T ss_pred HHHHh------cCchHh-HHHHHHHHHHHHHHHhcccccccchhhhccchhcccc---cccHHHHHHHccCCCeEeehHH
Confidence 76643 246653 5555555444444444444433222111000000000 1122344567788887654432
Q ss_pred HHhhhHHhh-h--hhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHH
Q 016266 258 FAYSGLQQA-F--VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL 333 (392)
Q Consensus 258 ~~~~g~~~~-~--~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~ 333 (392)
......... + ..+.|...+. +.+.+.+..+++.++..++..++.++.|+++||+|+|+.+ ..+.++..+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~l~~~~~~l-- 308 (420)
T PRK09528 232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL-LLAGTIMAVRIIG-- 308 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-HHHHHHHHHHHHH--
Confidence 221111111 1 1112211111 1223334678888888999999999999999999999854 4555555555432
Q ss_pred hccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccc
Q 016266 334 INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTAN 382 (392)
Q Consensus 334 ~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~ 382 (392)
..+.++ .+.+++..++.|++.+...+...+++.+.+|++. +++.
T Consensus 309 ~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~ 353 (420)
T PRK09528 309 SGFATG-----PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIY 353 (420)
T ss_pred HHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeee
Confidence 234444 2455666778888888877788889999998654 4443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=162.18 Aligned_cols=327 Identities=14% Similarity=0.105 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhh-hccCCCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~ 102 (392)
++.+.+....++++.++.......+. +.++.+... ...++......+++++.|+++||+|||+.+..+...+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 34556666666666665444333222 222223332 2345555666788899999999999999998877655433
Q ss_pred HHhh----hch-----hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhh
Q 016266 103 VAAN----LFP-----SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 173 (392)
Q Consensus 103 ~~~~----~~~-----~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G 173 (392)
.... ..+ .+...++.|++.|++.+...+....+..+.. +++++.+|......++|..+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~g~~~g 149 (396)
T TIGR00882 82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS------------RNSNFEYGKARMFGCVGWALC 149 (396)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh------------hhcccccchhhhhcccHHHHH
Confidence 2211 111 2233455678888877766666555544331 234556666666678888888
Q ss_pred hHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHH
Q 016266 174 NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL 253 (392)
Q Consensus 174 ~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (392)
+.++..+.. .+||.. |++.+++.++..++.+..+++++++++++++.+.+++ +++.++..+.+|||+++.
T Consensus 150 ~~~~g~l~~------~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 219 (396)
T TIGR00882 150 ASIAGILFS------IDPQIV-FWLGSGFALILMLLLMFAKPKAPSSATVANALGANAS---AFSLKLALELFRQRKFWM 219 (396)
T ss_pred HHHHhhhhc------cCchHH-HHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccC---CCCHHHHHHHHcCCcHHH
Confidence 888776543 368764 5555555554443333333322211111000000000 011233456788988765
Q ss_pred HHHHHHhhhHHhh---hhhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHH
Q 016266 254 IIPLFAYSGLQQA---FVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF 329 (392)
Q Consensus 254 l~~~~~~~g~~~~---~~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~ 329 (392)
+.+..+....... ...+.|.+.+. ..+.+.+..+.+..+..+...++.+..|++.||+|+|+.+ .++.++..+..
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l-~~~~~l~~l~~ 298 (396)
T TIGR00882 220 FVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL-LIAGTIMSVRI 298 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHH
Confidence 5443222111111 11122222222 1123334567788888888999999999999999998854 45665555553
Q ss_pred HHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchh
Q 016266 330 LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPT 384 (392)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~ 384 (392)
.. ..+.++ .+.+++..++.|++..........+..+..|++. +++.+.
T Consensus 299 ~~--~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~ 347 (396)
T TIGR00882 299 IG--SSFATT-----ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLI 347 (396)
T ss_pred HH--HHhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehH
Confidence 32 233333 2455666778888876666666667777776544 334443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-17 Score=159.68 Aligned_cols=274 Identities=14% Similarity=0.057 Sum_probs=148.3
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHh-hhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 72 FTCFSLVASLVVRVLGSKNALILG-TTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g-~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
+..+++..++ .||+||||.+++. .+...+.... .++++++.++..+.+.|...+...+...++..++.
T Consensus 65 ~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 134 (393)
T PRK15011 65 ILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHA--------- 134 (393)
T ss_pred HHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---------
Confidence 3344555566 9999999886544 4433333332 35677777665655555444555666666555543
Q ss_pred Cccchh--hhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccccccccc
Q 016266 150 HEGTVI--GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETAD 226 (392)
Q Consensus 150 ~~~~~r--g~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (392)
++++| +...++..++.++|..+|+.++..+.++ .|||.. |.+.++..++..+. .+++||.+++++++..
T Consensus 135 -~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-----~gw~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 206 (393)
T PRK15011 135 -DKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-----FSFTVM-YLSAAVAFIVCGVMVWLFLPSMRKELPLATG- 206 (393)
T ss_pred -hhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----cChHHH-HHHHHHHHHHHHHHHHhhcCccCCCCccccc-
Confidence 22333 4555777778889999999998877653 479874 55555544443333 3445554322111100
Q ss_pred ccchhhhhHHHHHHHHHHhhccch-hHHHHH-HHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHh
Q 016266 227 ASVNFYSYLVSLSKSITTLLADVR-MLLIIP-LFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSL 302 (392)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~ 302 (392)
+ .+.. .++++ .+.... .....+....+ ..+.|.+.++..+ .++.+.+.....++.+++.+
T Consensus 207 ----~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~ 270 (393)
T PRK15011 207 ----T----LEAP------RRNRRDTLLLFVICTLMWGTNSLY--IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTML 270 (393)
T ss_pred ----c----cccc------ccccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 11222 121111 11111111111 1223333333333 34667777777777888999
Q ss_pred hhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccc
Q 016266 303 AAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTAN 382 (392)
Q Consensus 303 ~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~ 382 (392)
+.|+++||+++|+.+ ..+.+...+.+.. ....++ .+..++..++.+++.+...+..++...|.+|++++.+.
T Consensus 271 ~~G~l~dr~g~~~~~-~~~~~~~~~~~~~--~~~~~~-----~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~ 342 (393)
T PRK15011 271 IAGYFAKRLGKRFLM-RVAAVAGVCFYAG--MLMAHS-----PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSAT 342 (393)
T ss_pred HHHHHHHHhChHHHH-HHHHHHHHHHHHH--HHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHH
Confidence 999999999988743 3444433333221 122222 23334444445555555555566778899998888888
Q ss_pred hhhhh
Q 016266 383 PTLIR 387 (392)
Q Consensus 383 ~~~~~ 387 (392)
+.++.
T Consensus 343 ~~~~~ 347 (393)
T PRK15011 343 TLYTN 347 (393)
T ss_pred HHHHH
Confidence 87643
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=166.90 Aligned_cols=331 Identities=13% Similarity=0.086 Sum_probs=208.0
Q ss_pred hHHHHHHHHHHHHHHHH---hHH----HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHH
Q 016266 29 DVHILSCAFLLIFLAYG---AAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL 101 (392)
Q Consensus 29 ~~~~l~~~~~~~~~~~~---~~~----~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l 101 (392)
-|+++..+++.....+. +.+ .+++..+.+.+...+..++...++.++.++.+.+.||+|.|.+.++|.++.++
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 34555555555544442 233 33444444444445567777778888899999999999999999999999888
Q ss_pred HHHh-hhchhhH-HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 102 FVAA-NLFPSWY-TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 102 ~~~~-~~~~~~~-~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
.... .++++.+ +++...++.|+|.|..+.++...+..+ ++|+|+++.|+..++.++|..+=+.+...
T Consensus 124 g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-----------F~kkR~lA~Gia~~GsG~G~~~~~~l~~~ 192 (509)
T KOG2504|consen 124 GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTY-----------FEKKRALATGIAVSGTGVGTVVFPPLLKY 192 (509)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhH-----------hHHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence 6654 5777765 566779999999999999988877766 56899999999877777666555555444
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccc------------------------c-cccccccch----
Q 016266 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG------------------------E-KETADASVN---- 230 (392)
Q Consensus 180 ~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~---- 230 (392)
+... .|||.. +.++..+.+-.++....+|+...+. + .++++...+
T Consensus 193 l~~~-----~G~r~~-~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (509)
T KOG2504|consen 193 LLSK-----YGWRGA-LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLS 266 (509)
T ss_pred HHHH-----hCcHHH-HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCccccc
Confidence 4432 479886 4455555444444556666621110 0 000000000
Q ss_pred -------hhhhH---HHHHHH---HHHhhccchhHHHHHHHHh--hhHHhhhhhcccchhhh-ccccccchhhHHHHHHh
Q 016266 231 -------FYSYL---VSLSKS---ITTLLADVRMLLIIPLFAY--SGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYG 294 (392)
Q Consensus 231 -------~~~~~---~~~~~~---~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~g 294 (392)
.++.. ..+... ..+.++|+.++.+.....+ .++...+ .+.+.+. +..+..++.++++++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~---~~l~~~~~~~g~~~~~aa~l~Siig 343 (509)
T KOG2504|consen 267 NLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPF---VYLPSYAKSLGLSSNDAAFLLSIIG 343 (509)
T ss_pred chhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCChhhhHHHHHHHH
Confidence 00000 011111 1467888888766543322 2222221 2233333 23344457899999999
Q ss_pred HHHHHHHhhhhhhccCCCCch-hhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 016266 295 AFDAICSLAAGRLTTGLPSIT-FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373 (392)
Q Consensus 295 i~~~~g~~~~G~lsd~~g~r~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~ 373 (392)
+.+.+|+++.|++.|+...++ .+..++.+...++.. .+....+ ++.++...+++|++.+.+....+.++.|+
T Consensus 344 i~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~--~~p~~~~-----~~~l~~~~~~fG~~~g~~~~l~~~i~~~~ 416 (509)
T KOG2504|consen 344 VSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL--FLPFATT-----YVGLIVFSILFGFCVGSFSSLTPVILVDL 416 (509)
T ss_pred HhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH--HHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987433 333333443443321 1223322 46788888999999999999888899999
Q ss_pred ccCCc-cccchhhh
Q 016266 374 FKHDT-VTANPTLI 386 (392)
Q Consensus 374 ~p~~~-~~a~~~~~ 386 (392)
.+.++ ..|+++..
T Consensus 417 ~g~~~l~~a~Gl~l 430 (509)
T KOG2504|consen 417 VGLEKLSNAYGLLL 430 (509)
T ss_pred cChhhcchHHHHHH
Confidence 98655 66777654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-17 Score=159.34 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=171.1
Q ss_pred CCCchhHHHHHHHHH--HhhhhhhHHHHHHhh-----chhH-HHHHhhhHHHHHHHh-hhc---hhhHHHHHHHHHHhhh
Q 016266 57 EGNLGTISLGILYTS--FTCFSLVASLVVRVL-----GSKN-ALILGTTGYWLFVAA-NLF---PSWYTMVPASLYLGFA 124 (392)
Q Consensus 57 ~~~~g~~~~~~~~~~--~~v~~~~~g~l~dr~-----G~r~-~l~~g~~~~~l~~~~-~~~---~~~~~l~~~r~l~Gig 124 (392)
+.+......+.+... ..+.+++.|+++||+ |||| .+..+..+.++.... .+. .+++.+++..++.+..
T Consensus 28 ~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~ 107 (402)
T PRK11902 28 VEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL 107 (402)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 344444444433322 247789999999999 8876 566666665544333 233 3466677777888888
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHH
Q 016266 125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT 204 (392)
Q Consensus 125 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~ 204 (392)
.+...++..+++.++. |+|||+++.++...+.+.|..+|+.+...+.... .|||.. |++.+++.+
T Consensus 108 ~~~~~~~~~al~~~~~----------~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~----~gw~~~-f~i~a~~~l 172 (402)
T PRK11902 108 SASQDIVFDAYSTDVL----------HPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV----LGWGNT-YLLMAGLML 172 (402)
T ss_pred HHHHHHHHHHHHHHhc----------ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc----cCHHHH-HHHHHHHHH
Confidence 8888888888888886 7788999999998888889888888776665421 379875 555555444
Q ss_pred HHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc-ccccc
Q 016266 205 LGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGV 283 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~g~ 283 (392)
+..+..+.++|++++++++ + ...++.+ ++..+.++||+++..............+......+.+.+ .+.+.
T Consensus 173 ~~~l~~~~~~e~~~~~~~~--~---~~~~~~~---~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~ 244 (402)
T PRK11902 173 AGALTTLWAPEPEVPARPP--R---SLGEAVV---GPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSA 244 (402)
T ss_pred HHHHHHHhcCCCccccccc--c---hhHHHHH---HHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH
Confidence 4333334455543321111 0 0011112 233457788887765443222222111111112222221 23334
Q ss_pred chhhHHHHHHhH-HHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHH-HhccccCCCccchHHHHHHH----HHHhh
Q 016266 284 SGVGGAMAVYGA-FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMA----ALLGI 357 (392)
Q Consensus 284 s~~~~~~~~~gi-~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~----~l~G~ 357 (392)
++.+.+....++ +.+++.++.|++.||+++|+.+. .+.++..+..+.. .....+++ .+..++.. +..|+
T Consensus 245 ~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~-~~~~~~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~g~ 319 (402)
T PRK11902 245 GEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM-LFGVLQAVSNLGYWVLAVTPKH----LWTMALAIGIENLCGGM 319 (402)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHHHHH
Confidence 467777655554 58899999999999999887543 4444333332211 11222222 23333332 45677
Q ss_pred hhhhhhhHHHHHHHhhccC
Q 016266 358 GDGVLNTQLSALLGILFKH 376 (392)
Q Consensus 358 ~~~~~~~~~~a~~~~~~p~ 376 (392)
+.+...+...+++.+.+|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~ 338 (402)
T PRK11902 320 GTAAFVALLMALCNRSFSA 338 (402)
T ss_pred HHHHHHHHHHHhcCCCCcH
Confidence 7777788888888888874
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=162.32 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=168.1
Q ss_pred CchhHHHHHHHHHHhhhh----hhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hchhhHHHHHHHHHHhhhHHHHHhhhh
Q 016266 59 NLGTISLGILYTSFTCFS----LVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEG 133 (392)
Q Consensus 59 ~~g~~~~~~~~~~~~v~~----~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~ 133 (392)
+..+...++.+++.++.| ++.|++.||+|+|..+++|..+....++.+ +..++..++++|.+||+|.+..+++..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 334556777777777654 678999999999999999999888877764 788999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 016266 134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL 213 (392)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~ 213 (392)
+.+++.. ++++|||+++|+.....++|..+|+.+++.+.+.. |-+ ..|.+.+++.++-..+.+++
T Consensus 182 amlAd~f---------~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-----Gk~-aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 182 AMLADVF---------PEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-----GKS-APFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHc---------ccchhhhHHHHHHHHHHhccceecCCcccchHhhc-----CCc-CcHHHHHHHHHHHHHHHHhe
Confidence 9888876 46788999999999999999999999999887754 233 34777777777655555555
Q ss_pred cCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc-cc-hhhHHHH
Q 016266 214 RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VS-GVGGAMA 291 (392)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g-~s-~~~~~~~ 291 (392)
-++.+.++++. .+. ..+++.+++|..+........++...++.-+.++. +..+.+. .. +.|.+..
T Consensus 247 i~p~~~~~~~~-----~~~-------~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlsl-wm~e~m~~p~w~~G~~fL 313 (464)
T KOG3764|consen 247 IEPTEMDPDST-----EQG-------TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSL-WMLETMFTPGWEVGLAFL 313 (464)
T ss_pred eCccccCcccc-----ccC-------ccHHHHHhCchHhhhhcchhhccchHHHhCcccHH-HHHHhccCCCcceeeeec
Confidence 44422221110 011 12446788888877665555566666665333321 1212222 22 4566667
Q ss_pred HHhHHHHHHHhhhhhhccCCCCchhhHHHHH
Q 016266 292 VYGAFDAICSLAAGRLTTGLPSITFIVSGGA 322 (392)
Q Consensus 292 ~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~ 322 (392)
...+...+|..+.|.|.||++..+.+...+.
T Consensus 314 p~~~~y~ig~~lfg~la~k~~~~~wl~~~~g 344 (464)
T KOG3764|consen 314 PASLSYAIGTNLFGKLADKYPHLRWLLSLGG 344 (464)
T ss_pred ccccchhccCchHHHHHHhcCchhHHHHHHH
Confidence 7788889999999999999995444443333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-17 Score=162.63 Aligned_cols=351 Identities=11% Similarity=0.033 Sum_probs=194.6
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHh-HHHhHhhh----ccCCCchhHHHHHHHHHHhhhhhhHHHHHHh-hchhHHHH
Q 016266 20 VLTPKNYTRDVHILSCAFLLIFLAYGA-AQNLETTV----NTEGNLGTISLGILYTSFTCFSLVASLVVRV-LGSKNALI 93 (392)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~~l----~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr-~G~r~~l~ 93 (392)
|.+.++.+|.++.+....+..-.+|+. ...+...+ +.+.....+..+.+.....+..++.|+++|| +||||++.
T Consensus 6 ~~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~ 85 (489)
T PRK10207 6 PMGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV 85 (489)
T ss_pred CcchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH
Confidence 344445566666655555555444433 33333333 3222222233344444445566789999999 99999999
Q ss_pred HhhhHHHHHHHh-hhchh-hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccc--hhhhhHHHHHHHHHHh
Q 016266 94 LGTTGYWLFVAA-NLFPS-WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGT--VIGSFNGEFWGMFASH 169 (392)
Q Consensus 94 ~g~~~~~l~~~~-~~~~~-~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~rg~~~g~~~~~~~~g 169 (392)
++.+++.+.... .+.++ ...+++.|+++|+|.|...+...+.+++.. |++ +|++++++++.+.++|
T Consensus 86 ~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~----------p~~~~~~~~~~~~~~~~~nig 155 (489)
T PRK10207 86 LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCY----------PPKDPRLDGAFTLFYMSINIG 155 (489)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhc----------CCCchhhhcchhHHHHHHHHH
Confidence 999998886654 34444 334557899999999999988888888876 333 5688999999999999
Q ss_pred hhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccc--cc-c--cccccc---------------
Q 016266 170 QFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG--EK-E--TADASV--------------- 229 (392)
Q Consensus 170 ~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~-~--~~~~~~--------------- 229 (392)
..+|+.++..+.++ .|||.. |.+..+..+++++...+.++..++. ++ + .+....
T Consensus 156 ~~~g~~l~g~l~~~-----~gw~~~-F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~ 229 (489)
T PRK10207 156 SLISLSLAPVIADK-----FGYSVT-YNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCA 229 (489)
T ss_pred HHHHHHHHHHHHHh-----hChHHH-HHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 99999988887664 368874 5444333333333333334321111 00 0 000000
Q ss_pred --hhhhhHHHH------------H-H---HHHHhhccchhHHHHHHH----HhhhHHhh-hhhcccchhhhc-cccccc-
Q 016266 230 --NFYSYLVSL------------S-K---SITTLLADVRMLLIIPLF----AYSGLQQA-FVWAEFTKEIVT-PALGVS- 284 (392)
Q Consensus 230 --~~~~~~~~~------------~-~---~~~~~~~~~~~~~l~~~~----~~~g~~~~-~~~~~~~~~~~~-~~~g~s- 284 (392)
.+..+.... + . +..+..|+|.+....... ++....+. +..+.+.+...+ +..|..
T Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i 309 (489)
T PRK10207 230 WLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI 309 (489)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE
Confidence 000000000 0 0 001223333322211110 11111111 111222221111 111222
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchh------hHHHHHHHHHHHHHHHH---hccccCCCccchHHHHHHHHHH
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITF------IVSGGAIAQVVVFLWIL---INYSVTSGVLGTLYPLIMAALL 355 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~------~~~~g~~~~~i~~~~~~---~~~~~~~~~~~~~~~~i~~~l~ 355 (392)
....+..+..+..++.+++.|++.||+++|+. .+.+|.++..++++... ..........+.++.....++.
T Consensus 310 ~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~ 389 (489)
T PRK10207 310 NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQ 389 (489)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHH
Confidence 22344455556677888899999999988752 23467666665543210 0111111111245666788899
Q ss_pred hhhhhhhhhHHHHHHHhhccCCc-cccchhhh
Q 016266 356 GIGDGVLNTQLSALLGILFKHDT-VTANPTLI 386 (392)
Q Consensus 356 G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~~ 386 (392)
|+|.+...+...+.+.+..|++. +.+++.++
T Consensus 390 g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~ 421 (489)
T PRK10207 390 SLGELFISALGLAMIAALVPQHLMGFILGMWF 421 (489)
T ss_pred HHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence 99999999999999999998654 55666543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=163.98 Aligned_cols=233 Identities=13% Similarity=0.092 Sum_probs=161.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh---hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
.+.++..+.+++++.|++.||+|.|+++..+.++.++.++.. ...+++.+++.|++||++.|..+++...+.+.|+
T Consensus 79 ~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~- 157 (466)
T KOG2532|consen 79 FSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA- 157 (466)
T ss_pred HHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeEC-
Confidence 455555677889999999999999999999999888777653 3345567789999999999999999999988887
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCccc-
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDK- 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~- 219 (392)
|++||+++.++..++..+|.+++-.+++.+-+. ..||+.. |.++++++++-.+ ..++.+|.+.+
T Consensus 158 ---------P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s----~~GW~si-fY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 158 ---------PPNERSTFIAILTAGSQLGTIITMPVSGLLCES----SLGWPSI-FYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc----CCCCchH-HHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 899999999999998989988888777777654 3689886 6666666655333 34555553321
Q ss_pred cc---cccccccchhh-hhHHH-HHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccc--cccchhhHHHHH
Q 016266 220 GE---KETADASVNFY-SYLVS-LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA--LGVSGVGGAMAV 292 (392)
Q Consensus 220 ~~---~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~ 292 (392)
+. +|....+..+. ...++ ..-..++.++++.+|.+....+ +.....+..-.|.|.|..+- ++.++.|+..++
T Consensus 224 ~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f-~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sal 302 (466)
T KOG2532|consen 224 PNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAF-GGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSAL 302 (466)
T ss_pred CCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHH
Confidence 11 11100000000 00000 0012346788888887766543 32222222345566666543 455688999999
Q ss_pred HhHHHHHHHhhhhhhccCCCC
Q 016266 293 YGAFDAICSLAAGRLTTGLPS 313 (392)
Q Consensus 293 ~gi~~~~g~~~~G~lsd~~g~ 313 (392)
..+...+.++++|+++||+-+
T Consensus 303 P~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 303 PFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998754
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-16 Score=155.18 Aligned_cols=328 Identities=10% Similarity=-0.019 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHhH-HHhHhhhccCCCchhHH----HHHHHHHHhhhhhhHHHHHHhhch-hHHHHHhhhHHHHHHHh-
Q 016266 33 LSCAFLLIFLAYGAA-QNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVAA- 105 (392)
Q Consensus 33 l~~~~~~~~~~~~~~-~~l~~~l~~~~~~g~~~----~~~~~~~~~v~~~~~g~l~dr~G~-r~~l~~g~~~~~l~~~~- 105 (392)
++.-.++.|..+... +.+...+.++.+.+... .++......+++++.|.++||+|+ |+++.++.++.++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 333444445555443 23333333333333333 445555667888999999999965 77777777666554433
Q ss_pred hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC
Q 016266 106 NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185 (392)
Q Consensus 106 ~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~ 185 (392)
.+.++++.++..|++.|++.++..+...+.......+... |...+..|.+.+| .+|..+|+.++..+...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~--~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-- 156 (418)
T TIGR00889 87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGL--DVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-- 156 (418)
T ss_pred HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCC--CchhcCCCeeeeh------hHHHHHHHHHHHHhccc--
Confidence 3567788888899999998776666544433222111000 1112224556666 35566666666544211
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHh
Q 016266 186 GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ 265 (392)
Q Consensus 186 ~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 265 (392)
..|+. +.+.+++.++..++.++++|+++.+ +++ +.+.++ ..+ .+..+.+|+|+++.+....+..+...
T Consensus 157 ---~~~~~--f~~~~~~~~~~~~~~~~~~e~~~~~-~~~-~~~~~~--~~~---~~~~~~~k~~~~~~~~~~~~~~~~~~ 224 (418)
T TIGR00889 157 ---LSNIQ--LYITAGSSALLGVFALTLPDIPVAK-STA-KMSIKV--MLG---LDAFILFKNKRMAIFFFFSMLLGAPL 224 (418)
T ss_pred ---chhHH--HHHHHHHHHHHHHHHhcCCCCCCCc-ccc-ccCHHH--Hhh---hhHHHHhcCCCeeeHHHHHHHHHhHH
Confidence 12432 4454554444444445555542211 110 000000 001 12235678898776554444333222
Q ss_pred hhhhcccchhhhccc--------cccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccc
Q 016266 266 AFVWAEFTKEIVTPA--------LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYS 337 (392)
Q Consensus 266 ~~~~~~~~~~~~~~~--------~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~ 337 (392)
......+++...+.+ .+.+..+....+..+..+++.++.|+++||+|+|+. +..+.++..++.... ...
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~~~~v~~~l~--~~~ 301 (418)
T TIGR00889 225 QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLVAWALRFGFF--AYG 301 (418)
T ss_pred HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHH--HHc
Confidence 222122222221111 223566888899999999999999999999999885 456666666654322 222
Q ss_pred cCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhhh
Q 016266 338 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 338 ~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.... ...+.+++..++.|++.+...+....++.|.+|+ +++.+++.++
T Consensus 302 ~~~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 302 DPEY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred Ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 1110 0023456677889999988888889999999984 5677888775
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=169.04 Aligned_cols=252 Identities=15% Similarity=0.054 Sum_probs=156.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hch----------------------------------
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP---------------------------------- 109 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~~---------------------------------- 109 (392)
.+.+...++++.++.+++.||+|||+.+.++.+++++..+.. +.+
T Consensus 74 ~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 153 (633)
T TIGR00805 74 NGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQAL 153 (633)
T ss_pred eehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCc
Confidence 455666778889999999999999999999998887766532 110
Q ss_pred -----------------hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhh
Q 016266 110 -----------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV 172 (392)
Q Consensus 110 -----------------~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~ 172 (392)
.+..++++|+++|+|.++.++...+|+.|+. |+++|++++|++.++..+|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~----------~~~~~~~~~~i~~~~~~iG~~l 223 (633)
T TIGR00805 154 RPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA----------KSKNSPLYIGILESIAVFGPAF 223 (633)
T ss_pred cccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC----------CccccHHHHHHHHHHHHhhhHH
Confidence 2456778999999999999999999999986 7899999999999999999999
Q ss_pred hhHhhhhhccCCC-------------CCCCC----cchhHHHHHHHHHHHHHHHHHhccCCcccc---cc-c--cccc-c
Q 016266 173 GNLITLAVLKDDK-------------GGSTS----GTTLLFIVFLGVITLGTILMCFLRKEEDKG---EK-E--TADA-S 228 (392)
Q Consensus 173 G~~i~~~~~~~~~-------------~~~~~----wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~-~--~~~~-~ 228 (392)
|+++++.+.+... ..... ||. .|.+.+++.++..+..++++++.++. .+ + +.+. +
T Consensus 224 G~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl-~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~ 302 (633)
T TIGR00805 224 GYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI-GFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLE 302 (633)
T ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhccc
Confidence 9998877664321 00111 433 24454555444333344454432211 00 0 0000 0
Q ss_pred ---chh-h---hhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhH-HHH
Q 016266 229 ---VNF-Y---SYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGA-FDA 298 (392)
Q Consensus 229 ---~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi-~~~ 298 (392)
... . ...++..+...++++||.++...............+ ..+.|.+.++.++ .++++.+.....+ +.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~-~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~ 381 (633)
T TIGR00805 303 KSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGY-ITFLPKYLENQYGISSAEANFLIGVVNLPAAG 381 (633)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHH
Confidence 000 0 011222334557889998877655433221111111 2234444433344 4567777766665 568
Q ss_pred HHHhhhhhhccCCCCch-hhHHHHHHHHHHH
Q 016266 299 ICSLAAGRLTTGLPSIT-FIVSGGAIAQVVV 328 (392)
Q Consensus 299 ~g~~~~G~lsd~~g~r~-~~~~~g~~~~~i~ 328 (392)
+|.+++|+++||++.+. ..+..+.++..++
T Consensus 382 vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 382 LGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 99999999999998432 2333444444444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=154.18 Aligned_cols=302 Identities=17% Similarity=0.101 Sum_probs=180.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
.+++.....+++++.++++||+|||..+.++.++..+.... ...++++.++..|++.|+..|.......-|+.|.+
T Consensus 66 vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~s 145 (485)
T KOG0569|consen 66 VSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEIS 145 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 45666666788899999999999999999888765544332 25688999999999999999999999999999998
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc-
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK- 219 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~- 219 (392)
|.+.||........+..+|..+|..++..-.-. ....|+.. +....+.+++..+...+++|.++.
T Consensus 146 ----------P~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG---t~~~W~~l-~~~~~i~~~~~l~~l~~~PESPk~L 211 (485)
T KOG0569|consen 146 ----------PKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG---TEDLWPYL-LAFPLIPALLQLALLPFLPESPKYL 211 (485)
T ss_pred ----------hhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC---CCcchHHH-HHHHHHHHHHHHHHHhcCCCCcchH
Confidence 889999988888888888888887665432211 12357653 444444445555555677776541
Q ss_pred ----ccccccc------------ccc----hhhhhHHH----HHHHHHHhhccchhHHHHHHHHhhhHHhhh--hh--cc
Q 016266 220 ----GEKETAD------------ASV----NFYSYLVS----LSKSITTLLADVRMLLIIPLFAYSGLQQAF--VW--AE 271 (392)
Q Consensus 220 ----~~~~~~~------------~~~----~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~--~~--~~ 271 (392)
.++++.+ .+. .+....++ +.....+.++|++.+.-....+...+.+.+ .. ..
T Consensus 212 l~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~ 291 (485)
T KOG0569|consen 212 LIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFF 291 (485)
T ss_pred HHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHH
Confidence 1111100 000 00000000 001244667776665432221111111111 10 12
Q ss_pred cchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhc-cccCC--CccchH-
Q 016266 272 FTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN-YSVTS--GVLGTL- 346 (392)
Q Consensus 272 ~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~-~~~~~--~~~~~~- 346 (392)
|...+. +.++....+-++....++.+.+.++++..+.||.|||. +++.+..+..++.+++... ...+. ++ ..
T Consensus 292 Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp-Lll~~~~~~~~~~~~~~~~~~l~~~~~~~--~~y 368 (485)
T KOG0569|consen 292 YSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP-LLLISLSLMAVALLLMSIALFLSNSFGSW--LSY 368 (485)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHH
Confidence 222222 23344446778889999999999999999999999886 4555655555443332111 11111 11 11
Q ss_pred HHHHHHHHHhhhhhhh-hhHHHHHHHhhccC-Cccccch
Q 016266 347 YPLIMAALLGIGDGVL-NTQLSALLGILFKH-DTVTANP 383 (392)
Q Consensus 347 ~~~i~~~l~G~~~~~~-~~~~~a~~~~~~p~-~~~~a~~ 383 (392)
..+++.+++.++.+.. .|..+=+.+|++|. .|..|++
T Consensus 369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 2234444555544433 56677778899975 4555554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=156.72 Aligned_cols=292 Identities=13% Similarity=0.053 Sum_probs=169.2
Q ss_pred HHHHhhhhhhHHHHHHh----hchhHH-HHHhhhHHHHHHHh-hhchh------hHHHHHHHHHHhhhHHHHHhhhhHHH
Q 016266 69 YTSFTCFSLVASLVVRV----LGSKNA-LILGTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVGEGTYL 136 (392)
Q Consensus 69 ~~~~~v~~~~~g~l~dr----~G~r~~-l~~g~~~~~l~~~~-~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~ 136 (392)
....++.+++.|+++|| +||||. ++.+...+.+.... ...++ ...++..+++.+++.+...++..++.
T Consensus 45 ~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 124 (437)
T TIGR00792 45 RILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLV 124 (437)
T ss_pred HHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCc
Confidence 34457889999999998 677554 55666666554443 23332 34556677888888877666655555
Q ss_pred HHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC--CCCCCcchhHHHHHHHHHHHHHHHH-Hhc
Q 016266 137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILM-CFL 213 (392)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~--~~~~~wr~~~f~i~~~~~~~~~~~~-~~~ 213 (392)
.+.. .+++||++..++.......|..+++.+...+..... ....+||.. +.+.+++.++..+.. +..
T Consensus 125 ~~~~---------~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~-~~i~~~l~~~~~~~~~~~~ 194 (437)
T TIGR00792 125 PAIT---------LDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMF-ALVLALIGVVSLIICFFGT 194 (437)
T ss_pred cccc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 5554 256899999998777777777666555443332111 123578764 444444444433322 344
Q ss_pred cCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc-cchhhHHHHH
Q 016266 214 RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VSGVGGAMAV 292 (392)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~ 292 (392)
||++++.+++ . +++.+.++.++ +.++||+++.+....+......... ..+.+.+.+...+ ....+.+...
T Consensus 195 ~e~~~~~~~~-~----~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 265 (437)
T TIGR00792 195 KERYSEIPKN-I----EKKLSLKQIFK---ALFKNDQLLILCLAYLFYNLAFNIK-NGVQVYYFTYVLGDPELFSYMGSI 265 (437)
T ss_pred EecCCCCCcc-c----ccCCCHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHH-cchhheeEeeecCChHHHHHHHHH
Confidence 5433211111 0 01112333332 4578888776554433222211111 1122222222233 2345566677
Q ss_pred HhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHh
Q 016266 293 YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGI 372 (392)
Q Consensus 293 ~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~ 372 (392)
..++.+++.++.|+++||+|+|+.. ..+.++..++.+.. .+.+++ .+..++..++.|++.+..++..+++++|
T Consensus 266 ~~i~~ii~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (437)
T TIGR00792 266 AIVAGLIGVLLFPRLVKKFGRKILF-AGGILLMVLGYLIF--FFAGSN----LPLILVLIILAGFGQNFVTGLVWALVAD 338 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHH--HHcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999988754 46666666554432 232221 3455666778899999889999999999
Q ss_pred hcc-------C-Cccccchhhh
Q 016266 373 LFK-------H-DTVTANPTLI 386 (392)
Q Consensus 373 ~~p-------~-~~~~a~~~~~ 386 (392)
..| + +++.+++.++
T Consensus 339 ~~~~~~~~~~~~~~G~~~~~~~ 360 (437)
T TIGR00792 339 TVDYGEWKTGVRAEGLVYSVRT 360 (437)
T ss_pred hhhhhhhhcCccchHHHHHHHH
Confidence 865 2 2345666554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-16 Score=143.95 Aligned_cols=304 Identities=13% Similarity=0.148 Sum_probs=200.1
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh----hchhhHHHHHHHHHHhhh
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFA 124 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~----~~~~~~~l~~~r~l~Gig 124 (392)
++++.++.+..........++..|.++++++|.+.||+|+|+.+++|..++.++.... ...+|..++..-++.|.|
T Consensus 38 ~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~G 117 (422)
T COG0738 38 HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASG 117 (422)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 4444444333222333556778889999999999999999999999999998766653 345788888888999999
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC-----C---------CCCCC
Q 016266 125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-----K---------GGSTS 190 (392)
Q Consensus 125 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~-----~---------~~~~~ 190 (392)
.+..-++.+.|++... ++++..+.+++.+..+++|.++||+++..+.... . .....
T Consensus 118 i~~LetaaNp~v~~lg----------~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~ 187 (422)
T COG0738 118 IGLLETAANPYVTLLG----------KPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASS 187 (422)
T ss_pred hHHHHhccchHHHHhC----------CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 9999999999999987 5556778899999999999999999876655420 0 00012
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHH-HHHHhhhHHhhhhh
Q 016266 191 GTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII-PLFAYSGLQQAFVW 269 (392)
Q Consensus 191 wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~~~~ 269 (392)
++.+ |...+...++-.+.....|.|+.+..++ ++. +.++. ...+.+++|+.+.-. -.++|.|.+....
T Consensus 188 v~~p-Yl~~~~~lvll~v~~~~~k~p~~~~~~~-~~~---~~~~~-----~~~~l~~~~~~~~gvl~~FlYVG~Eva~g- 256 (422)
T COG0738 188 VQFP-YLILAGLLVLLAVLILLSKLPDLQVAAP-SLG---ASGSA-----GLSSLFQNKHLRLGVLAIFLYVGAEVAIG- 256 (422)
T ss_pred hhhH-HHHHHHHHHHHHHHHHhccCCcCCcccc-ccc---ccccc-----hHHHHHhChHHHHHHHHHHHHHhHHHHHH-
Confidence 4443 4444443333233334445443322111 111 11110 123567788876543 4566888886653
Q ss_pred cccchhhhcccccc--chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHH
Q 016266 270 AEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY 347 (392)
Q Consensus 270 ~~~~~~~~~~~~g~--s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 347 (392)
.+.+.+..+..|. .+.++..+.+..+.++||+++-++..|+...|.+. +.++...+.++. .....+ ..
T Consensus 257 -sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~La-f~a~~~ill~~~--~~l~~g------~v 326 (422)
T COG0738 257 -SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLA-FYALIAILLLLA--VALIGG------VV 326 (422)
T ss_pred -HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHH--HHHhcC------hH
Confidence 3344444333443 46788899999999999999988888998777554 333323222111 233433 34
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccch
Q 016266 348 PLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANP 383 (392)
Q Consensus 348 ~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~ 383 (392)
.+...++.|+.++..+|+++++-.+..|++.+.+.+
T Consensus 327 ~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~ 362 (422)
T COG0738 327 ALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSG 362 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccCccccccce
Confidence 455567889999999999999999999866655544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=136.46 Aligned_cols=141 Identities=37% Similarity=0.715 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhHHHhHhhh----cc------CCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH
Q 016266 33 LSCAFLLIFLAYGAAQNLETTV----NT------EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (392)
Q Consensus 33 l~~~~~~~~~~~~~~~~l~~~l----~~------~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~ 102 (392)
++++++++|++|++.+++++.+ +. ++++|..+.++.|.+++++++++|.+.+++|+|+.+++|.+++.++
T Consensus 1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y 80 (156)
T PF05978_consen 1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY 80 (156)
T ss_pred CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4689999999999998887765 22 3578999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 103 VAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 103 ~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.++++.++.+.++++.++.|+|.+..|++++.|+++++ ++++|++..|++|...+.+.++|+++...+.+
T Consensus 81 ~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s----------~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 81 IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS----------TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC----------CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987 66899999999999999999999999887765
Q ss_pred C
Q 016266 183 D 183 (392)
Q Consensus 183 ~ 183 (392)
.
T Consensus 151 ~ 151 (156)
T PF05978_consen 151 G 151 (156)
T ss_pred C
Confidence 4
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=157.29 Aligned_cols=297 Identities=15% Similarity=0.101 Sum_probs=171.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..+.......++++++|+++|++|||++++++.+.+.++.+. ..++|+..++++|+++|+|.|........|++|++
T Consensus 94 ~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia-- 171 (513)
T KOG0254|consen 94 LTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA-- 171 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC--
Confidence 345566666788999999999999999999999999887775 57889999999999999999999999999999998
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc---
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK--- 219 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~--- 219 (392)
|++.||...+........|..+|.+++....+. ..+||.. +.+..+..++-.+..++++|+++.
T Consensus 172 --------p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~----~~~Wr~~-~~~~~i~~~~~~~~~~~~pesp~~L~~ 238 (513)
T KOG0254|consen 172 --------PAHIRGTLVSLYQLFITIGILLGYCINYGTSKV----YAGWRIP-LGLALIPAVILALGMLFLPESPRWLIE 238 (513)
T ss_pred --------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC----CccHHHH-HHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 788999999999888888888886665544321 1479864 444444444433345566654431
Q ss_pred -cccccccc------c---ch---hhhhHH-HHHHH--------HHHhhccchhHH-HHHHHHhhhHHh--h-hhhcccc
Q 016266 220 -GEKETADA------S---VN---FYSYLV-SLSKS--------ITTLLADVRMLL-IIPLFAYSGLQQ--A-FVWAEFT 273 (392)
Q Consensus 220 -~~~~~~~~------~---~~---~~~~~~-~~~~~--------~~~~~~~~~~~~-l~~~~~~~g~~~--~-~~~~~~~ 273 (392)
.+.++.+. . .. +....+ +...+ .++.+..|+... .........+++ + .....|.
T Consensus 239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~ 318 (513)
T KOG0254|consen 239 KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYS 318 (513)
T ss_pred cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeeh
Confidence 11100000 0 00 000000 00000 011111122221 111111111111 1 1112344
Q ss_pred hhhhccccccchh-hHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcc--ccC----CCccchH
Q 016266 274 KEIVTPALGVSGV-GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY--SVT----SGVLGTL 346 (392)
Q Consensus 274 ~~~~~~~~g~s~~-~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~--~~~----~~~~~~~ 346 (392)
+.+.+. .|.+.. .....+.++.+.++..+...+.||+|||+. ++.+...+.++.+++.... ... .... .+
T Consensus 319 ~~if~~-~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~-~~ 395 (513)
T KOG0254|consen 319 TTIFKS-AGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL-LLFGAAGMSICLVILAVVGVFALYYPNSSKGA-GW 395 (513)
T ss_pred HHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHhHHHHHHHHHHHHHHHHHhccCCCcccch-hH
Confidence 443322 233322 445677888889999999999999998874 5567766666655432111 111 1000 12
Q ss_pred HHHHHH-HHHhhhhhhhhhHHHHHHHhhccCCc
Q 016266 347 YPLIMA-ALLGIGDGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 347 ~~~i~~-~l~G~~~~~~~~~~~a~~~~~~p~~~ 378 (392)
..++.. +.......+..+..+.+.+|.+|.+.
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~ 428 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL 428 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCcHhH
Confidence 222222 22222333344555568899999543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=150.54 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=76.7
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhc------hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLF------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~------~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+++++++.|++.||+|||+++.++.++++++... .++ ++++.+++.|++.|+|.+...+.....+.+++
T Consensus 73 ~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F--- 149 (591)
T PTZ00207 73 AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF--- 149 (591)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 34567778999999999999999999988776553 233 57888999999999999998888777777663
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhH
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL 175 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~ 175 (392)
|++||++.|+.....++|..+.+.
T Consensus 150 --------p~~RG~a~Gi~~~~~gLGsaI~~~ 173 (591)
T PTZ00207 150 --------PSNRGAVVAIMKTFTGLGSAILGS 173 (591)
T ss_pred --------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999988988865333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=145.71 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=183.7
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--h----hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~----~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
-..+.++++|.++||+.|||+++.+-++..+.... . -..+.+.+++.-++.|++.+...|+..+.+.+.-
T Consensus 57 P~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV---- 132 (524)
T PF05977_consen 57 PILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELV---- 132 (524)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34567889999999999999999888765432221 1 1246677888889999999999999999888875
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccccccc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKET 224 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (392)
|+++...+.++.....+.+.++||.+++.+.... |-.. .|.+-++..++.+......|++.++++ .
T Consensus 133 ------~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~-----G~~~-~f~inalsfl~~i~~l~~~~~~~~~~~-~- 198 (524)
T PF05977_consen 133 ------PKEDLPAANALNSISFNIARIIGPALGGILVAFF-----GAAA-AFLINALSFLISILALLRWKPPPPPSS-L- 198 (524)
T ss_pred ------cHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHccccccccc-c-
Confidence 7788999999988888999999999888776532 1122 244433333333323333343222111 1
Q ss_pred ccccchhhhhHHHHHHHHHHhh-ccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHH
Q 016266 225 ADASVNFYSYLVSLSKSITTLL-ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~ 301 (392)
++++..+.+++-.+.. ++|.+..........++.....+. ..|.+..+.++ ....|++++.+|+|.++|+
T Consensus 199 ------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~a-LlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga 271 (524)
T PF05977_consen 199 ------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWA-LLPLFARDVLGGGASGYGLLLAAFGVGAILGA 271 (524)
T ss_pred ------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHH-hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 0112233334444443 345544433322222222222222 23343333333 4567899999999999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccc
Q 016266 302 LAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVT 380 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~ 380 (392)
++.+++.+|+++++. +..+.+..+++++. +...++ .+..++..++.|++....++..++.+-+..|++ ++.
T Consensus 272 l~~~~l~~~~~~~~l-v~~~~~~~a~~~~~--lal~~~-----~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GR 343 (524)
T PF05977_consen 272 LLLPRLRRRLSSRRL-VLLASLLFALALLL--LALSPS-----FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGR 343 (524)
T ss_pred HHHHHhhcccCcchh-hHHHHHHHHHHHHH--HhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhH
Confidence 999999999987764 44566666555432 234443 356677778899999999999999999989865 577
Q ss_pred cchhhhh
Q 016266 381 ANPTLIR 387 (392)
Q Consensus 381 a~~~~~~ 387 (392)
++|.|+.
T Consensus 344 v~si~~~ 350 (524)
T PF05977_consen 344 VFSIYQM 350 (524)
T ss_pred HHHHHHH
Confidence 8888764
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-14 Score=144.93 Aligned_cols=347 Identities=10% Similarity=0.031 Sum_probs=189.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhH-HHhHhhhccC--CCchhHH----HHHHHHHHhhhhhhHHHHHHh-hchhHHHHHhhh
Q 016266 26 YTRDVHILSCAFLLIFLAYGAA-QNLETTVNTE--GNLGTIS----LGILYTSFTCFSLVASLVVRV-LGSKNALILGTT 97 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~-~~l~~~l~~~--~~~g~~~----~~~~~~~~~v~~~~~g~l~dr-~G~r~~l~~g~~ 97 (392)
+.+.+..+....++.-.+|... ..+...+..+ .+.+... .+.+.....+++++.|+++|| +|||+++.++.+
T Consensus 8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~ 87 (475)
T TIGR00924 8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI 87 (475)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence 3445555555555544444333 3333333332 2333322 344444556788899999999 899999999999
Q ss_pred HHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHh
Q 016266 98 GYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176 (392)
Q Consensus 98 ~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i 176 (392)
++++.... ...+++..++..|.+.|+|.|...+...++++++.++. ++++|++++++++.+.+.|..+|+.+
T Consensus 88 ~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~-------~~~~r~~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 88 VLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERG-------DMPRRDGGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCC-------CcccccceehhHHHHHHHHHHHHHHH
Confidence 88776554 35667777788999999999998888888888876210 11358899999999999999999998
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccc--cc-cccccchhhhhH------------------
Q 016266 177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGE--KE-TADASVNFYSYL------------------ 235 (392)
Q Consensus 177 ~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~------------------ 235 (392)
...+.++ .+|+.. |.+.++..+++.+..++.++..++.+ ++ .++.+.......
T Consensus 161 ~g~l~~~-----~g~~~~-f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (475)
T TIGR00924 161 AGVIAEN-----YGYHVG-FNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMH 234 (475)
T ss_pred HHHHHHh-----cChHHH-HHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877543 368764 44444444444444444443221110 00 000000000000
Q ss_pred ---HH-H-------------H---HH--HHHhhccchhHHHHHHHHhh-hHHhhhh-----hcccchhhhcccc-ccc-h
Q 016266 236 ---VS-L-------------S---KS--ITTLLADVRMLLIIPLFAYS-GLQQAFV-----WAEFTKEIVTPAL-GVS-G 285 (392)
Q Consensus 236 ---~~-~-------------~---~~--~~~~~~~~~~~~l~~~~~~~-g~~~~~~-----~~~~~~~~~~~~~-g~s-~ 285 (392)
.. . . ++ ..+.-++ |...+.+.+... -+...+. .+.+.....+... +.+ .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip 313 (475)
T TIGR00924 235 HVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARN-KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVP 313 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHh-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEEC
Confidence 00 0 0 00 0000011 111111111111 0111110 0111111111111 111 2
Q ss_pred hhHHHHHHhHHHHHHHhhhh----hhccC-CCCchhh-HHHHHHHHHHHHHHHHhc--cccCCCccchHHHHHHHHHHhh
Q 016266 286 VGGAMAVYGAFDAICSLAAG----RLTTG-LPSITFI-VSGGAIAQVVVFLWILIN--YSVTSGVLGTLYPLIMAALLGI 357 (392)
Q Consensus 286 ~~~~~~~~gi~~~~g~~~~G----~lsd~-~g~r~~~-~~~g~~~~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~l~G~ 357 (392)
.+.+.++.++..++..++.. ++.|| .+.+... +.+|.++..++++...+. ...+....+.+++.+..+++|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 56667777777777776644 56665 2222211 246777776665432110 1111001125678888899999
Q ss_pred hhhhhhhHHHHHHHhhccCC-ccccchhhh
Q 016266 358 GDGVLNTQLSALLGILFKHD-TVTANPTLI 386 (392)
Q Consensus 358 ~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~ 386 (392)
|.....|..++++.+..|++ |+..++.+.
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~ 423 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWF 423 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999864 677777664
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=132.68 Aligned_cols=295 Identities=13% Similarity=0.090 Sum_probs=197.6
Q ss_pred HhHHHhHhhhccCCCchhHHHHHH----HHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHH
Q 016266 45 GAAQNLETTVNTEGNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120 (392)
Q Consensus 45 ~~~~~l~~~l~~~~~~g~~~~~~~----~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l 120 (392)
.+.+.+.+++..+.+++....++. ..+++..+++++++.+|+|.++.+..+.++.++....-...+...++..-.+
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l 108 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLL 108 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345566666666666665554443 3467788899999999999999999999888877775333355666777888
Q ss_pred HhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHH
Q 016266 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFL 200 (392)
Q Consensus 121 ~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~ 200 (392)
.|.|.+..-+...+.+-+. .||+-|..+|.|..+.+.|..+++.+...+.++. .+||..+.+. +
T Consensus 109 ~G~gIav~nVLLPslIK~~-----------Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~----~gW~~aL~~W-A 172 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRD-----------FPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----GGWRGALGFW-A 172 (395)
T ss_pred HHhhHHHHHHhhhHHHHhh-----------cccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----ccHHHHHHHH-H
Confidence 8988887655555554443 5789999999999999999999988887777654 3698753332 3
Q ss_pred HHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHh---hhhhcccchhhh
Q 016266 201 GVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ---AFVWAEFTKEIV 277 (392)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~ 277 (392)
...+++++ ..++...+++..... .+. ++-.+.++||.-|.+... .|++. ....+++++.+.
T Consensus 173 l~allAl~--~WlPq~~r~~~~~~~----~~~-------~~~~~vw~~~~aW~vtLf---mGlqS~~~Y~~~~WLP~ili 236 (395)
T COG2807 173 LLALLALL--IWLPQALREQAASIA----TKL-------VSVRKVWRSPLAWQVTLF---MGLQSLLYYIVIGWLPAILI 236 (395)
T ss_pred HHHHHHHH--HHhhhcccccccccc----ccc-------ccccccccCchhHHHHHH---HHhhHHHHHHHHHHHHHHHH
Confidence 33344333 233432221111100 000 111257889988876543 44432 122356677777
Q ss_pred ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhh
Q 016266 278 TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357 (392)
Q Consensus 278 ~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~ 357 (392)
+++++..++|.+.....+..++.+++.-.+.+|...++++......++.++++-+ .+.|.+. +... ++++|+
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~--~~~P~~~----~~lw--~~llG~ 308 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL--LLAPGQL----PILW--ALLLGL 308 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH--HHhhhhH----HHHH--HHHHhC
Confidence 7777777899999999999999999999998875544445555556666665543 3545431 2222 589999
Q ss_pred hhhhhhhHHHHHHHhhccCCcc
Q 016266 358 GDGVLNTQLSALLGILFKHDTV 379 (392)
Q Consensus 358 ~~~~~~~~~~a~~~~~~p~~~~ 379 (392)
+.+..++...+++.+..+|.++
T Consensus 309 G~G~~F~laL~li~~rs~~a~~ 330 (395)
T COG2807 309 GQGGAFPLALTLILLRSSDAAI 330 (395)
T ss_pred ccchHHHHHHHHHHhhcCChHH
Confidence 9999999999999998876443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-14 Score=136.56 Aligned_cols=308 Identities=11% Similarity=-0.008 Sum_probs=156.9
Q ss_pred HhHhhhccCCCchhHHHHHHH--HHHhhhhhhHHHH-----HHhhchhHHHHHhhhHH-H--HHHHhhh--chh-hHHHH
Q 016266 49 NLETTVNTEGNLGTISLGILY--TSFTCFSLVASLV-----VRVLGSKNALILGTTGY-W--LFVAANL--FPS-WYTMV 115 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~--~~~~v~~~~~g~l-----~dr~G~r~~l~~g~~~~-~--l~~~~~~--~~~-~~~l~ 115 (392)
...+.+-.+.+.+....+.+. ....+..++.+++ .||+||||.+++...+. . +...... ..+ ...++
T Consensus 22 p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (390)
T TIGR02718 22 DALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAV 101 (390)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 333344344455555555542 2223445445444 56679999986666332 2 2222212 222 22223
Q ss_pred HHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhH
Q 016266 116 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL 195 (392)
Q Consensus 116 ~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~ 195 (392)
..-.+.++..+...+..-++..+.. ++++++...+....+..+|..+|+.....+.++ .|||..
T Consensus 102 ~~~~~~~~~~a~~d~~~d~~~~~~~----------~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-----~gw~~~- 165 (390)
T TIGR02718 102 GLLACASLASATQDIATDGMAAEHF----------NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-----FGQRPA- 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----------CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHHH-
Confidence 2333334444444333333333322 556667777777666677777777665555543 478874
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchh
Q 016266 196 FIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE 275 (392)
Q Consensus 196 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 275 (392)
|.+.+++.++..+..++++|++++++++ +++ ..++..+.+|+|+++......+..........+..++.
T Consensus 166 f~~~a~l~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (390)
T TIGR02718 166 FLLVACVPLASLVCVLWLKDRAVASPEA-------PLA----RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLY 234 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCcccc-------chh----hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666665555444444554432211111 000 11233467788877655443332222111122223333
Q ss_pred hhccccccchhhHHHHHHhH-HHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHh-cc-ccCCCccchHHHHHHH
Q 016266 276 IVTPALGVSGVGGAMAVYGA-FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NY-SVTSGVLGTLYPLIMA 352 (392)
Q Consensus 276 ~~~~~~g~s~~~~~~~~~gi-~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~i~~ 352 (392)
+.+.+++.++++.+....++ ...++.++.|++.||+|+|+.+. .+.++..+.....+. .. ...+. ....+...
T Consensus 235 l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 310 (390)
T TIGR02718 235 LVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI-LGVGLAGSLALLWFAQAAFWLAPG---IAVAWSCS 310 (390)
T ss_pred HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHcccCCc---HHHHHHHH
Confidence 33334445677887777764 56677899999999999887543 444433222111111 11 11110 12334444
Q ss_pred HHHhhhhhhhhhHHHHHHHhhccC--Cccccchhhhh
Q 016266 353 ALLGIGDGVLNTQLSALLGILFKH--DTVTANPTLIR 387 (392)
Q Consensus 353 ~l~G~~~~~~~~~~~a~~~~~~p~--~~~~a~~~~~~ 387 (392)
++.+++.+...+..++...+..++ +++++++.++.
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQS 347 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 555667777777788887777754 45667776653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-15 Score=137.40 Aligned_cols=296 Identities=15% Similarity=0.056 Sum_probs=172.3
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++++..|.++||+|||.++.++++...++... ..+.|+..++++|++.|+..|-.-+. -++++|..
T Consensus 80 lQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~--------- 149 (451)
T KOG2615|consen 80 LQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVI-RAIISDVV--------- 149 (451)
T ss_pred HHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH-HHHHHhhc---------
Confidence 44567778899999999999999999887776554 47788877788899999999876443 56777775
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHH-HHHHHHH-HH-H-HHHHhccCCccccccc-c
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFI-VFLGVIT-LG-T-ILMCFLRKEEDKGEKE-T 224 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~-i~~~~~~-~~-~-~~~~~~~~~~~~~~~~-~ 224 (392)
+||+|++.++.+..++++|.++||.+++.+.+.... ..+.+.+. .+.++.. .+ + ...++++|+.+.++++ +
T Consensus 150 -sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~---~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~ 225 (451)
T KOG2615|consen 150 -SEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI---SGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDE 225 (451)
T ss_pred -ChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh---hccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhccc
Confidence 789999999999999999999999999888762211 11222122 1111111 11 1 1236677764422111 1
Q ss_pred ccccchhhhhHHH--HHH--HHHHhhccchhHHHHHHHHhhhH---Hhhhhh---cccchhhhcccccc--chhhHHHHH
Q 016266 225 ADASVNFYSYLVS--LSK--SITTLLADVRMLLIIPLFAYSGL---QQAFVW---AEFTKEIVTPALGV--SGVGGAMAV 292 (392)
Q Consensus 225 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~g~---~~~~~~---~~~~~~~~~~~~g~--s~~~~~~~~ 292 (392)
.....+..++-.+ .+. .-...++|++..-.+......+. ...++. ..+...+....+|. .+.|.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~ 305 (451)
T KOG2615|consen 226 HSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLST 305 (451)
T ss_pred ccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeeh
Confidence 0000000000000 001 11123445443321111100111 111111 11122222233444 467888877
Q ss_pred HhHHHHHHHhhhhhhccCCC-CchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 016266 293 YGAFDAICSLAAGRLTTGLP-SITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLG 371 (392)
Q Consensus 293 ~gi~~~~g~~~~G~lsd~~g-~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~ 371 (392)
-|+...+......+..||.. ..+..+..+..+..-.++ ++.+.+. +..+++...+..++.+...|.+..++.
T Consensus 306 tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~l--lls~~~~-----~~~l~~~s~l~sf~~A~~vt~Lt~Lv~ 378 (451)
T KOG2615|consen 306 TGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFL--LLSLART-----PVVLYLGSTLKSFSTASVVTCLTSLVH 378 (451)
T ss_pred hhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH--HHhcccc-----chhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777776666666666643 122222233332222222 2345554 257888889999999999999999999
Q ss_pred hhcc-CCccccchhhhh
Q 016266 372 ILFK-HDTVTANPTLIR 387 (392)
Q Consensus 372 ~~~p-~~~~~a~~~~~~ 387 (392)
...| ++|+++.+..++
T Consensus 379 ~~~~~~qrG~~~Gi~~S 395 (451)
T KOG2615|consen 379 KYGPQSQRGTLNGIFRS 395 (451)
T ss_pred hcCCcccchHHHHHHHH
Confidence 9997 677888887764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=143.24 Aligned_cols=297 Identities=11% Similarity=0.063 Sum_probs=170.5
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+......++++++.|+++|.||||+.++.+.++..++.+. ..++|...+++..++.|+|.|...... ..++|..
T Consensus 85 ~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~-~~isEl~---- 159 (599)
T PF06609_consen 85 TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAA-LAISELV---- 159 (599)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHH-HHHHHhc----
Confidence 3344456788899999999999999999999998887764 578999999999999999988765542 3356664
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH-HHhccCCcccc-cc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKG-EK 222 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~-~~~~~~~~~~~-~~ 222 (392)
|.|.|+...++.....-.....|+.++..+.. ..+||+. |.+..+...+++++ +++.++|++.+ +.
T Consensus 160 ------p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-----~~~WRw~-~~~~~i~~~i~~vl~~~fY~PP~~~~~~~ 227 (599)
T PF06609_consen 160 ------PNKWRGLGLAIASIPFIITTWISPLIAQLFAA-----HSGWRWI-FYIFIIWSGIALVLIFFFYFPPPRAQLHG 227 (599)
T ss_pred ------ccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-----CCCcchH-HHHHHHHHHHHHHHHHHHhCCCchhhhcc
Confidence 77888776665443332222344445443332 2379985 55556655555543 34445443211 00
Q ss_pred cc-ccccch---------------------------hhhhH---------------------HHHH---HH---HHHhhc
Q 016266 223 ET-ADASVN---------------------------FYSYL---------------------VSLS---KS---ITTLLA 247 (392)
Q Consensus 223 ~~-~~~~~~---------------------------~~~~~---------------------~~~~---~~---~~~~~~ 247 (392)
++ ++.+.- .+.+| .|.+ ++ ..+.+|
T Consensus 228 ~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~ 307 (599)
T PF06609_consen 228 RKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFK 307 (599)
T ss_pred ccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhc
Confidence 00 000000 00000 1111 11 236677
Q ss_pred cchhHHH-HHHHHhhhHHhhhhhcccchh---hh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHH
Q 016266 248 DVRMLLI-IPLFAYSGLQQAFVWAEFTKE---IV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA 322 (392)
Q Consensus 248 ~~~~~~l-~~~~~~~g~~~~~~~~~~~~~---~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~ 322 (392)
|+|.+.. ....+..|.........|+.. .. ++..+....++....++.+..+|.++.|.+..++++-|..++++.
T Consensus 308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~ 387 (599)
T PF06609_consen 308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGS 387 (599)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHH
Confidence 7553322 222222332211111122221 11 122222346677778888899999999999998888777777777
Q ss_pred HHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchh
Q 016266 323 IAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPT 384 (392)
Q Consensus 323 ~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~ 384 (392)
+++.+.+.+. ....++.. ...+...++-|++.+...........-..|++. +.|.++
T Consensus 388 ~~~ta~~Gam-a~~~~~n~----~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL 445 (599)
T PF06609_consen 388 VLMTAFCGAM-AAVRPDNK----NAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGL 445 (599)
T ss_pred HHHHHHHHHH-HHccCCCc----chHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHH
Confidence 7666554332 23333321 334556667788877777666666666667543 555553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=137.96 Aligned_cols=297 Identities=12% Similarity=0.061 Sum_probs=161.6
Q ss_pred hhhhhHHHHHHh-hchhHHHHHhhhHHHHHHHh-hhc-hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCC
Q 016266 74 CFSLVASLVVRV-LGSKNALILGTTGYWLFVAA-NLF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150 (392)
Q Consensus 74 v~~~~~g~l~dr-~G~r~~l~~g~~~~~l~~~~-~~~-~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 150 (392)
...++.|+++|| +|||+++.++.+++.+.... .++ +++..+++.|+++|+|.|...+...++++++.++
T Consensus 72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~-------- 143 (500)
T PRK09584 72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK-------- 143 (500)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC--------
Confidence 334688999999 59999999999887765443 243 3455667789999999998888877888887621
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc----cCCccccccc-cc
Q 016266 151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL----RKEEDKGEKE-TA 225 (392)
Q Consensus 151 ~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~----~~~~~~~~~~-~~ 225 (392)
++++|+.++++++.+.++|..+|+.++..+.++ .|||.. |.+..+...++.+..++. ++..++++++ .+
T Consensus 144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-----~g~~~~-F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PRK09584 144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-----YGWSVA-FALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPIN 217 (500)
T ss_pred CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-----hCHHHH-HHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccc
Confidence 223456688888889999999999998877653 368874 545444444444333222 2211111000 00
Q ss_pred cccch-----------------hhhhHHH------------H-HHHHHH--hhccchhHHHHHHHHhh-hHHhhhh-hcc
Q 016266 226 DASVN-----------------FYSYLVS------------L-SKSITT--LLADVRMLLIIPLFAYS-GLQQAFV-WAE 271 (392)
Q Consensus 226 ~~~~~-----------------~~~~~~~------------~-~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~~~-~~~ 271 (392)
..... ++++..+ . .++..+ ...++|.+...+.+... -+...+. .+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~ 297 (500)
T PRK09584 218 YRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPT 297 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0000000 0 000000 01112222222211111 0111110 011
Q ss_pred cchh----hhccc-cccc-hhhHHHHHHhHHHHHHHhhh----hhhccCCCCchhhHHHHHHHHHHHHHHHHhccc--cC
Q 016266 272 FTKE----IVTPA-LGVS-GVGGAMAVYGAFDAICSLAA----GRLTTGLPSITFIVSGGAIAQVVVFLWILINYS--VT 339 (392)
Q Consensus 272 ~~~~----~~~~~-~g~s-~~~~~~~~~gi~~~~g~~~~----G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~--~~ 339 (392)
+... ..+.. .|.. ..+.+.++.++..++..++. +++.||.+.++ .+.+|.++..++++.+...-. .+
T Consensus 298 ~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~-~~~~G~~l~~l~f~~l~~~~~~~~~ 376 (500)
T PRK09584 298 SLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPH-KFAIGMVLCSGAFLVLPLGAKFAND 376 (500)
T ss_pred HHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1010 00001 1222 23444455555555555554 77777766544 345778777777654211111 11
Q ss_pred CCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-Cccccchhh
Q 016266 340 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTVTANPTL 385 (392)
Q Consensus 340 ~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~~~~a~~~~ 385 (392)
....+.++.....+++|++.....|...+++.+..|+ .|+.++|.+
T Consensus 377 ~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~ 423 (500)
T PRK09584 377 AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW 423 (500)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1111235677888999999999999999999999986 446677754
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-14 Score=139.87 Aligned_cols=277 Identities=9% Similarity=-0.060 Sum_probs=157.0
Q ss_pred HHhhhhhhHHHHHHh----hchhHHHH-HhhhHHHHHHHh-hhchh------hHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 71 SFTCFSLVASLVVRV----LGSKNALI-LGTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr----~G~r~~l~-~g~~~~~l~~~~-~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
..++..|+.|.++|| +||||.++ .+.+..++.... ...|+ ....++..++.+.+.+...++..+..+|
T Consensus 57 ~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~ 136 (444)
T PRK09669 57 LDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGA 136 (444)
T ss_pred HHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHH
Confidence 346788999999999 78766554 555555554432 23332 3344556667777776666666777777
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC--CCCCcchhHHHHHHHHHHHHHHHH-HhccC
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GSTSGTTLLFIVFLGVITLGTILM-CFLRK 215 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~--~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~ 215 (392)
+.+ +++||++..++.......|..+++.+...+...... ...+|+.. +.+.+++..+..+.. +..||
T Consensus 137 ~t~---------~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~-~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 137 ITN---------DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA-MMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred hcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH-HHHHHHHHHHHHHHHhCCeEE
Confidence 763 568899988888777778777776654433322211 12456653 444444443333222 23344
Q ss_pred CccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccc-hhhHHHHHHh
Q 016266 216 EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS-GVGGAMAVYG 294 (392)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~g 294 (392)
+.+++ ++ ++.+.++ +..+.+|||+++.+....+......... +....++.+...+.. ..+.+.....
T Consensus 207 ~~~~~--~~------~~~~~~~---~~~~~~~n~~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~ 274 (444)
T PRK09669 207 RYTPE--VD------NSSSVWK---DLKLLLGNSQWRIMFIFNVVLLTAVVTR-GGATLYYVNYVLLRPDLATLFLVTGM 274 (444)
T ss_pred ecCCC--Cc------CCCCHHH---HHHHHhCCchHHHHHHHHHHHHHHHHHH-hhhhheeeeeecCCHHHHHHHHHHHH
Confidence 32111 10 0112232 3335678988877654433222211111 111112222222322 2334445566
Q ss_pred HHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhc
Q 016266 295 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF 374 (392)
Q Consensus 295 i~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~ 374 (392)
+..+++.++.++++||+|+|+.. ..+.+...++.+.. ....+++ .+.+++..+++|++.+...+..+++++|..
T Consensus 275 i~~ii~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~i~g~~~~~~~~~~~am~ad~~ 348 (444)
T PRK09669 275 IAGLFGALLSERLLGKFDRVRAF-KWTIVAFVILSALI-FFIPPSN----VWLIFALNILFNFIQNLTTPLQWSMFSDVV 348 (444)
T ss_pred HHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHH-HHhCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77888899999999999988754 34554444332221 2222322 355677778899999999999999999988
Q ss_pred c
Q 016266 375 K 375 (392)
Q Consensus 375 p 375 (392)
+
T Consensus 349 d 349 (444)
T PRK09669 349 D 349 (444)
T ss_pred h
Confidence 5
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=144.39 Aligned_cols=297 Identities=11% Similarity=0.028 Sum_probs=172.9
Q ss_pred ccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhh
Q 016266 55 NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEG 133 (392)
Q Consensus 55 ~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~ 133 (392)
..+........++++....+++++.|+++||+|||++++.+.++..++... .+++|+..+++.|+++|++.++......
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~ 193 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF 193 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence 334455566678888899999999999999999999999999998887765 5899999999999999999999999988
Q ss_pred HHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 016266 134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL 213 (392)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~ 213 (392)
.+++|+. ++|+|+.+..+ ....-.++.+++.....+.+ +||+. +++..+...+.++..++.
T Consensus 194 ~~~~E~~----------~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~Wr~~-~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 194 GLVAEIV----------SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DWRWL-FWIISIPSGLFLLLWFLP 254 (521)
T ss_pred hhheeec----------CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hHHHH-HHHHHHHHHHHHHHHHcc
Confidence 9888886 78999999998 55666666666666665543 59885 444444444444443333
Q ss_pred cCCccc----cccccc-c--cc--------chhhhhHHHH-HH------------HHHHhhccchhHHHHHHHHhhhHHh
Q 016266 214 RKEEDK----GEKETA-D--AS--------VNFYSYLVSL-SK------------SITTLLADVRMLLIIPLFAYSGLQQ 265 (392)
Q Consensus 214 ~~~~~~----~~~~~~-~--~~--------~~~~~~~~~~-~~------------~~~~~~~~~~~~~l~~~~~~~g~~~ 265 (392)
+|.++- .+.++. + ++ .......... .+ .....++.+++........+..+..
T Consensus 255 ~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 334 (521)
T KOG0255|consen 255 PESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF 334 (521)
T ss_pred CcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH
Confidence 354321 111100 0 00 0000000000 00 0123334443322222111111111
Q ss_pred hhhhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccch
Q 016266 266 AFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGT 345 (392)
Q Consensus 266 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 345 (392)
.. ..+...+....+|.+ ........+.....+....+.+.|+.|||.. ...+.++..+++++. .+.+.... .
T Consensus 335 ~~--~y~gl~~~~~~lg~~-~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~-~~~~~~~~~~~~~~~--~~~~~~~~--~ 406 (521)
T KOG0255|consen 335 SL--VYYGLSLNVSGLGGN-IYLNFTLSGLVELPAYFRNGLLLPEFGRRPP-LFLSLFLAGIGLLLF--GWLPDDLG--G 406 (521)
T ss_pred hH--HHHhhhhhhhhcCch-HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHH--HHhhccch--h
Confidence 11 111111111222322 2223344555777888888999999988764 445666666665432 34443210 0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc
Q 016266 346 LYPLIMAALLGIGDGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 346 ~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~ 378 (392)
+...+...+-.++.+......+.+..|++|+..
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~ 439 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV 439 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 123333333333444444455889999999644
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-18 Score=172.53 Aligned_cols=141 Identities=17% Similarity=0.164 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhch---hhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP---SWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~---~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
..+..+....+++++.|.++||+|||+++.++..++.++.+. .+++ +++.+.+.|+++|++.|...+....|+.|.
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~ 130 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEI 130 (451)
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355666677789999999999999999999999988877665 4677 899999999999999999999999999998
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE 217 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~ 217 (392)
. |+|+||+...+.......|..++..++....... +..+||.. +....+..++..+..++++|.+
T Consensus 131 ~----------~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~Wr~~-~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 131 A----------PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS--DNWGWRIL-LIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred c----------cccccccccccccccccccccccccccccccccc--cccccccc-cccccccccccccccccccccc
Confidence 7 8899999999888777777777777665543221 12468874 3333333333333345666654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-13 Score=126.64 Aligned_cols=346 Identities=15% Similarity=0.035 Sum_probs=189.2
Q ss_pred ccchhHHHHHHHHHHHHHH------HHhHHHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhH
Q 016266 25 NYTRDVHILSCAFLLIFLA------YGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTG 98 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~------~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~ 98 (392)
...++|+++.+..+.-++. |..++|....+-.+.+...+..-++..++....+.+-++.||+|-|....++...
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~l 118 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVL 118 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHH
Confidence 4566776655544444332 3344444333322222223333333334445566677999999999999999988
Q ss_pred HHHHHHh-hh--c----hhhH--HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHh
Q 016266 99 YWLFVAA-NL--F----PSWY--TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASH 169 (392)
Q Consensus 99 ~~l~~~~-~~--~----~~~~--~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g 169 (392)
-++.... .. . +.+. .......+.+.++..+...-....+.|+ +++||..+..+-..+..+|
T Consensus 119 n~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF----------~~~qra~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 119 NGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF----------PPDQRAIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC----------CcchhhhhhhHHHhcchHH
Confidence 7776553 21 2 2333 5556677777777665554445555554 8899999999888888899
Q ss_pred hhhhhHhhhhhccCC-CCCCCCcch-hHHHHHHHHHHHHHHHHHhccCC-ccccccccccccchhhhhHHHHHHHHHHhh
Q 016266 170 QFVGNLITLAVLKDD-KGGSTSGTT-LLFIVFLGVITLGTILMCFLRKE-EDKGEKETADASVNFYSYLVSLSKSITTLL 246 (392)
Q Consensus 170 ~~~G~~i~~~~~~~~-~~~~~~wr~-~~f~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (392)
..+|.+++..+.++. +..+..|-. +++....++..+.+++..+.+++ ++.+........ ++.++. +...+.+
T Consensus 189 vavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~--~~~~f~---~si~~~~ 263 (480)
T KOG2563|consen 189 VAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL--QDASFP---KSIKSCF 263 (480)
T ss_pred HHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh--hcCcHH---HHHHHHH
Confidence 999999888877655 222334522 12333333333333333333332 221111100000 011222 4556889
Q ss_pred ccchhHHHHHHHHhhhHHhhh-hhcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHH
Q 016266 247 ADVRMLLIIPLFAYSGLQQAF-VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ 325 (392)
Q Consensus 247 ~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~ 325 (392)
+|+++.++...+. .++.... +.+.....+.-++++...+|++....-+++++|+.+.|.+.||.++.|...++.....
T Consensus 264 ~n~~F~il~~~yg-i~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~ 342 (480)
T KOG2563|consen 264 KNRQFIILAICYG-IGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFA 342 (480)
T ss_pred cCccHHHHHHHHh-hhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 9999877654322 1111111 1111111111112222367888888888899999999999999876553333322222
Q ss_pred HHHHHHH-HhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh-ccCCccccch--hhhhhhh
Q 016266 326 VVVFLWI-LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL-FKHDTVTANP--TLIRQIF 390 (392)
Q Consensus 326 ~i~~~~~-~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~-~p~~~~~a~~--~~~~~~~ 390 (392)
.++...+ .+...+.. .++++....++|++.....|.-..+-.|. ||...++..| +..-|+|
T Consensus 343 ~v~~~~l~~~t~~~~~----~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f 407 (480)
T KOG2563|consen 343 LVGTLMLLTCTLFLGD----SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIF 407 (480)
T ss_pred HHHHHHHHHhhccCCc----eEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHH
Confidence 2221111 11111221 35677888889999888888777776665 5755555444 3344544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-12 Score=131.03 Aligned_cols=282 Identities=12% Similarity=0.079 Sum_probs=150.9
Q ss_pred hhhhhhHHHHHH----hhchhHHH-HHhhhHHHHHHHh-hhchh------hHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 73 TCFSLVASLVVR----VLGSKNAL-ILGTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 73 ~v~~~~~g~l~d----r~G~r~~l-~~g~~~~~l~~~~-~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
++..|+.|.++| |+||||.+ +.+....++.... ...|+ +..+++..++.+++.+...++..+..++..
T Consensus 56 ai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt 135 (473)
T PRK10429 56 AINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLT 135 (473)
T ss_pred HHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhC
Confidence 567889999999 66995554 5565555554333 22221 223445566777777777777777777776
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC--CCCCCcchhHHHHHHHHHHHHHHHH-HhccCCc
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE 217 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~--~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~ 217 (392)
+ +++||.+..++-....+.|..+++.+...+....+ ....+|+.. ..+.+++.++..+.. +..||+.
T Consensus 136 ~---------~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~i~~~~~~~~~~~~~~~~~e~~ 205 (473)
T PRK10429 136 L---------DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMF-TLVLIAFFIVSTIITLRNVHEVY 205 (473)
T ss_pred C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH-HHHHHHHHHHHHHHHHcCceecC
Confidence 3 57899998887555556565554443332222111 111234432 233333333322222 2244432
Q ss_pred cccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccccc-chhhHHHHHHhHH
Q 016266 218 DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV-SGVGGAMAVYGAF 296 (392)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~~gi~ 296 (392)
++..++. +..++.+.++.++ ..++||.++.+....+......... ..+.+++.+...+. +..+.+....+++
T Consensus 206 ~~~~~~~---~~~~~~~~~~~~~---~~~~n~~~~~ll~~~~~~~~~~~~~-~~~~~y~~~y~~~~~~~~~~~~~~~~i~ 278 (473)
T PRK10429 206 SSDNQVS---AEGSHLTLKDIVA---LIYKNDQLSCLLGMALAYNIASNII-NGFAIYYFTYVIGDADLFPYYLSYAGAA 278 (473)
T ss_pred Ccccccc---ccccCCCHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHH-hhheeeEEEEECCCHHHHHHHHHHHHHH
Confidence 1111010 0011123343332 3457877766554333222211111 11222222222222 3345556667788
Q ss_pred HHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhc-cccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhcc
Q 016266 297 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK 375 (392)
Q Consensus 297 ~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p 375 (392)
.+++.++.++++||+|+|+.. ..+.++..++.+..+.. ..+..+ .+.+++..++.|++.+..++..++++.|..+
T Consensus 279 ~ii~~~~~~~l~~r~gkk~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~g~~~~~~~~~~~am~ad~id 354 (473)
T PRK10429 279 NLVTLILFPRLVKSLSRRILW-AGASIFPVLSCGVLLLMGLAAPHN---ALLIVIAGILLNIGTALFWVLQVIMVADTVD 354 (473)
T ss_pred HHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHHHHhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999998854 34555444343322111 112211 3456667788999999999999999999965
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=140.92 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=165.6
Q ss_pred hhhhhhHHHHHH----hhchhHHHHH-hhhHHHHHHHhh-hc-h-h------hHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 73 TCFSLVASLVVR----VLGSKNALIL-GTTGYWLFVAAN-LF-P-S------WYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 73 ~v~~~~~g~l~d----r~G~r~~l~~-g~~~~~l~~~~~-~~-~-~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
++..|+.|.++| |+||||.+++ |....++..... .. | + ...+.+.-++..++......+..++..|
T Consensus 51 ai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~ 130 (428)
T PF13347_consen 51 AITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPE 130 (428)
T ss_pred hhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcc
Confidence 567789999999 8998888654 555555554443 23 3 1 1233455566677777776666666666
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCC--CCcchhHHHHHHHHHHHHHHHH-HhccC
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGS--TSGTTLLFIVFLGVITLGTILM-CFLRK 215 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~--~~wr~~~f~i~~~~~~~~~~~~-~~~~~ 215 (392)
..+ +++||.+..++-......|..+...+...+....+.+. .+|+.. ..+.+++..+..++. +..||
T Consensus 131 lt~---------~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~-~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 131 LTP---------DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM-ALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ccc---------cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH-HHHHHHHHHHHhhhhhheeee
Confidence 652 46799998888766666666555555444443332221 256653 334344433333322 34455
Q ss_pred CccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccccc-chhhHHHHHHh
Q 016266 216 EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV-SGVGGAMAVYG 294 (392)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~~g 294 (392)
++++.+++ .++.+.++. ....++||+++.+....++..+..... ..+.+++.+..++. ...+.......
T Consensus 201 ~~~~~~~~------~~~~~~~~~---~~~~~~nr~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~vl~~~~~~~~~~~~~~ 270 (428)
T PF13347_consen 201 RSVEVTEQ------EKKISLRDS---LRSLFRNRPFRILLLAFFLQWLAFALM-NTFLPYYFTYVLGNEGLISIFMLIFF 270 (428)
T ss_pred cccccccc------ccccccccc---hhhhcccchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhcCchhhHHHHHHHH
Confidence 21111111 111222332 235677888876665544333222221 11122222222333 34566667788
Q ss_pred HHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhc
Q 016266 295 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF 374 (392)
Q Consensus 295 i~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~ 374 (392)
++.+++.++.++++||+|+|+.. ..+.++.+++.++.. ...+++ .+..++..++.|++.+..++..+++++|+.
T Consensus 271 ~~~~v~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~~~-~~~~~~----~~~~~i~~~l~gi~~~~~~~~~~a~~ad~i 344 (428)
T PF13347_consen 271 VASIVGSPLWGRLSKRFGKKKVY-IIGLLLAALGFLLLF-FLGPGS----PWLVLILFILAGIGYGAFFVIPWAMLADVI 344 (428)
T ss_pred HHHHHHHHHHHHHHHHccceeeh-hhhHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHhHhhhcccccccccccccch
Confidence 88999999999999999999854 567776766655432 222122 477888899999999999999999999998
Q ss_pred cC
Q 016266 375 KH 376 (392)
Q Consensus 375 p~ 376 (392)
+.
T Consensus 345 d~ 346 (428)
T PF13347_consen 345 DY 346 (428)
T ss_pred hh
Confidence 73
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-12 Score=125.12 Aligned_cols=309 Identities=12% Similarity=0.060 Sum_probs=160.8
Q ss_pred HHhhhhhhHHHHHH----hhchhHHHHHhhhHHH-HHHHh-hhchhhH-----------------HHHHHHHHHhhhHHH
Q 016266 71 SFTCFSLVASLVVR----VLGSKNALILGTTGYW-LFVAA-NLFPSWY-----------------TMVPASLYLGFAASI 127 (392)
Q Consensus 71 ~~~v~~~~~g~l~d----r~G~r~~l~~g~~~~~-l~~~~-~~~~~~~-----------------~l~~~r~l~Gig~g~ 127 (392)
...+.+++.|.++| |+||||.++++..+.. +.... ..+++.. ..+..=.+..++...
T Consensus 51 ~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~ 130 (477)
T TIGR01301 51 SGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNM 130 (477)
T ss_pred HHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999 5999999987644332 22222 2333321 111111222334444
Q ss_pred HHhhhhHHHHHHhhhhhhhcCCCccchh--hhhHHHHHHHHHHhhhhhhHhhhhhccC-----CC--C-CC--CCcchhH
Q 016266 128 IWVGEGTYLTAAALSHASNHKLHEGTVI--GSFNGEFWGMFASHQFVGNLITLAVLKD-----DK--G-GS--TSGTTLL 195 (392)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r--g~~~g~~~~~~~~g~~~G~~i~~~~~~~-----~~--~-~~--~~wr~~~ 195 (392)
..++..++++|.. |+++| +.+.++.....++|..+|+.+++..... .. . +. .+-|. .
T Consensus 131 ~~~p~rALiaDl~----------p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (477)
T TIGR01301 131 LQGPCRAFLADLT----------GGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKS-C 199 (477)
T ss_pred HHHHHHHhccccc----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHH-H
Confidence 4445555555554 65543 6889988888899999999888754211 00 0 00 12233 3
Q ss_pred HHHHHHHHHHHHHHH-HhccCCcccccccc--ccccchhhhhHHHHHHHHHHhhcc--chhHHHHHHHH--hhhHH-hhh
Q 016266 196 FIVFLGVITLGTILM-CFLRKEEDKGEKET--ADASVNFYSYLVSLSKSITTLLAD--VRMLLIIPLFA--YSGLQ-QAF 267 (392)
Q Consensus 196 f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~--~~g~~-~~~ 267 (392)
|.+.+++.++..++. +.+||++....++. ++.+..++....+.+++.++.+|+ |.++.++...+ +.|+. ..+
T Consensus 200 F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~ 279 (477)
T TIGR01301 200 FLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFIL 279 (477)
T ss_pred HHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444433 45666432111110 000000111111223444444433 34455444322 22322 111
Q ss_pred hhcccc-hhhhc-c---ccccch----hhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHh-cc-
Q 016266 268 VWAEFT-KEIVT-P---ALGVSG----VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NY- 336 (392)
Q Consensus 268 ~~~~~~-~~~~~-~---~~g~s~----~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~-~~- 336 (392)
+.++|. ..+.. + +...++ -.+.+..+.+.+.+.+++.-++.+|+|+||..-.++.++.++++...++ ..
T Consensus 280 y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~ 359 (477)
T TIGR01301 280 FDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYV 359 (477)
T ss_pred hccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 112221 11111 0 000111 2344566777777888888999999986554544566666666544321 11
Q ss_pred ccC--C---------Cccc-hHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC---Cccccchhhhhhhh
Q 016266 337 SVT--S---------GVLG-TLYPLIMAALLGIGDGVLNTQLSALLGILFKH---DTVTANPTLIRQIF 390 (392)
Q Consensus 337 ~~~--~---------~~~~-~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~---~~~~a~~~~~~~~~ 390 (392)
..+ + +..+ -+..++...+.|+..+..++.-++++++..|+ +.+.-+|.+|..|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~ 428 (477)
T TIGR01301 360 AKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIV 428 (477)
T ss_pred hhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHH
Confidence 110 0 0000 14566777899999999999999999999983 33678888888765
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-13 Score=126.08 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=156.2
Q ss_pred chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCC
Q 016266 108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG 187 (392)
Q Consensus 108 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~ 187 (392)
..++..++++-++.|.|.+..-++.+.|+++.. ++|++++.+++.++.+++|..+||++...+.......
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~----------~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~ 76 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILG----------PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGD 76 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHC----------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcc
Confidence 467888888999999999999999999999987 6778999999999999999999999988665321100
Q ss_pred -----------CCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHH
Q 016266 188 -----------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP 256 (392)
Q Consensus 188 -----------~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (392)
..+|+.+ |.+.+.+..+..+...+.+.|+.++ ++.++.+. ++. . +..+.+++|++++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~-yl~ia~~~~~~~i~~~~~~~p~~~~-~~~~~~~~-~~~---~---~~~~~~~~~~~~l~~~ 147 (310)
T TIGR01272 77 LSMQVATANAEAAKVHTP-YLLLAGALAVLAIIFAFLPLPELQE-ADVARVSS-GDT---T---QKTSAFQFTHLVLGAL 147 (310)
T ss_pred hhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCCCc-cccccccc-ccc---c---chhhHHhhHHHHHHHH
Confidence 0246654 4433333333222223333322111 11100000 000 0 0113455666655332
Q ss_pred -HHHhhhHHhhhhhcccchhhhc----cccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHH
Q 016266 257 -LFAYSGLQQAFVWAEFTKEIVT----PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW 331 (392)
Q Consensus 257 -~~~~~g~~~~~~~~~~~~~~~~----~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~ 331 (392)
.+++.|.+.+.. + +.+.|.. .+++.++.+...+.+..+.++|+++.+++.||+++||.+ .++.++..++.++
T Consensus 148 ~~f~yvg~e~~~~-~-w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l-~~~~~l~~~~~~l 224 (310)
T TIGR01272 148 GIFVYVGAEVSAG-S-FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL-AFNAFLAVLLSIG 224 (310)
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHH
Confidence 344566665542 2 2222222 134455778888999999999999999999999988754 4555555554332
Q ss_pred HHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhh
Q 016266 332 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTL 385 (392)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~ 385 (392)
. ...+. .......++.|++.+...|...+...+.+|++.+++.+..
T Consensus 225 ~--~~~~~------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~ 270 (310)
T TIGR01272 225 A--ALTHG------YVAMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL 270 (310)
T ss_pred H--HHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 1 12222 1223355588999999999999999999988776666653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-11 Score=120.55 Aligned_cols=314 Identities=15% Similarity=0.112 Sum_probs=164.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHH-HHHhh--hch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAAN--LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l-~~~~~--~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
++-....++..|+.|.++|+-|+||-++......+. .+... ..+ +++...+.-++.-++.+...+...+++.+.++
T Consensus 77 sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~ 156 (477)
T PF11700_consen 77 SISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLAR 156 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 334444566778899999999988888776655443 33332 223 34443334444445555555666778888774
Q ss_pred hhhhhcCC----------------CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCC---CCCcchhHHHHHHHH
Q 016266 142 SHASNHKL----------------HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG---STSGTTLLFIVFLGV 202 (392)
Q Consensus 142 ~~~~~~~~----------------~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~---~~~wr~~~f~i~~~~ 202 (392)
...+..+. ..+.+|++..|.-++...+|..+--++...+....+.. ...-|.. +.+.++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~-~~~~a~w 235 (477)
T PF11700_consen 157 PEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA-FLIVALW 235 (477)
T ss_pred CChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH-HHHHHHH
Confidence 21110000 00001288888777666677666555554443322211 1122432 2222222
Q ss_pred H-HHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHH-hh-hHHhhhhhcccchhhhcc
Q 016266 203 I-TLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA-YS-GLQQAFVWAEFTKEIVTP 279 (392)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-g~~~~~~~~~~~~~~~~~ 279 (392)
. +.+...++.+|++++++..+..+ ..-..++++..+...+..|+|++.......+ +. |..... .+...+.++
T Consensus 236 w~vfsiP~~~~~~~~~~~~~~~~~~--~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~---~~~~i~a~~ 310 (477)
T PF11700_consen 236 WLVFSIPLFLWLPDRPGPRPLPSGS--SYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTII---SFAGIYATE 310 (477)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcch--hHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 1 23444556677654421111000 0011223322222223344555544333322 22 222111 111223333
Q ss_pred ccccc--hhhHHHHHHhHHHHHHHhhhhhhccCCCCc--hhhHHHHHHHHHHHHHHHHh-ccccCCCccchHHHHHHHHH
Q 016266 280 ALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSI--TFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAAL 354 (392)
Q Consensus 280 ~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r--~~~~~~g~~~~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~l 354 (392)
.+|.+ +...+..+..+.+++|++++|++.||+|.| +.++ ++.....+..+..++ .++.....-+.+.+++.+++
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~-~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~ 389 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL-ISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL 389 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH-HHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence 34544 556667888899999999999999999987 5443 344333222121111 01110000013678999999
Q ss_pred HhhhhhhhhhHHHHHHHhhccCCc-cccchhhh
Q 016266 355 LGIGDGVLNTQLSALLGILFKHDT-VTANPTLI 386 (392)
Q Consensus 355 ~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~~ 386 (392)
+|++.|..++..-++.+++.|+++ ++-+|+|.
T Consensus 390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~ 422 (477)
T PF11700_consen 390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYA 422 (477)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 999999999999999999999766 44777765
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-14 Score=135.44 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=102.9
Q ss_pred cchhHHHHHHHHHHHHH-HHHh--HHHhHhhh-----ccCCCch-------hHHHHHHHHHHhhhhhhHHHHHHhhchhH
Q 016266 26 YTRDVHILSCAFLLIFL-AYGA--AQNLETTV-----NTEGNLG-------TISLGILYTSFTCFSLVASLVVRVLGSKN 90 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~-~~~~--~~~l~~~l-----~~~~~~g-------~~~~~~~~~~~~v~~~~~g~l~dr~G~r~ 90 (392)
.||++..+.++.+..++ +|+. ++.+.+.+ +.++.-| ....++-+..-.++|++.|++.||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 67888777777665543 4532 22222222 2221111 11233344455689999999999999999
Q ss_pred HHHHhhhHHHHHHHh-hh---chh----hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHH
Q 016266 91 ALILGTTGYWLFVAA-NL---FPS----WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF 162 (392)
Q Consensus 91 ~l~~g~~~~~l~~~~-~~---~~~----~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~ 162 (392)
++...++++.+++++ .. .++ ...+...|+++|+|.|+-+|.+.+..+|.+ ..++||...+.+
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~a----------n~~~RGa~iaav 185 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESA----------NKKTRGAFIAAV 185 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhh----------hhccccceeEEE
Confidence 999999988877753 22 111 357788999999999999999999888887 567999999988
Q ss_pred HHHHHHhhhhhhHhhhhhc
Q 016266 163 WGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 163 ~~~~~~g~~~G~~i~~~~~ 181 (392)
.+....|...|.+++..+.
T Consensus 186 Fa~Qg~GilaG~ivt~Iv~ 204 (538)
T KOG0252|consen 186 FAMQGFGILAGGIVALIVS 204 (538)
T ss_pred EEecchhHhhccHHHHHHH
Confidence 8888888888887765554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-12 Score=123.74 Aligned_cols=271 Identities=9% Similarity=0.008 Sum_probs=150.2
Q ss_pred hhhhhhHHHHHHh----hchhHHHHH-hhhHHHHHHHhh-hchh------hHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 73 TCFSLVASLVVRV----LGSKNALIL-GTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 73 ~v~~~~~g~l~dr----~G~r~~l~~-g~~~~~l~~~~~-~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
++..|+.|.++|| +||||.+++ +.+.+++..... ..|+ ...+.+.-++..++.....++-.+..++..
T Consensus 59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt 138 (460)
T PRK11462 59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVIT 138 (460)
T ss_pred HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhc
Confidence 6778999999996 798888765 445555544432 2332 223445566778888877777777778876
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC--CCCCCcchhHHHHHHHHHHHHHHHHH-hccCCc
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILMC-FLRKEE 217 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~--~~~~~wr~~~f~i~~~~~~~~~~~~~-~~~~~~ 217 (392)
+ ++|||++..++.......|..+++.+...+....+ ....+|+.. ..+++++.++...+.+ ..||+.
T Consensus 139 ~---------d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~-~~i~~ii~~i~~~i~~~~~kE~~ 208 (460)
T PRK11462 139 N---------DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG-IAVLSVVAFMMLAFCFFTTKERV 208 (460)
T ss_pred C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH-HHHHHHHHHHHHHHHHhcceecc
Confidence 3 67899999998887777777777666544333221 112345442 3333333333222222 223321
Q ss_pred cccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhh---hhhcccchhhhccccccc-hhhHHHHHH
Q 016266 218 DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQA---FVWAEFTKEIVTPALGVS-GVGGAMAVY 293 (392)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---~~~~~~~~~~~~~~~g~s-~~~~~~~~~ 293 (392)
++ ++ ++.+.++.++ ..++||.++.+....+....... .....|..++ .+.. ..+.++..+
T Consensus 209 ~~--~~-------~~~~~~~~l~---~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~----~g~~~~~~~~l~~~ 272 (460)
T PRK11462 209 EA--PP-------TTTSMREDLR---DIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI----LGTPEVFVAFLTTY 272 (460)
T ss_pred CC--Cc-------cCCCHHHHHH---HHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh----cCChHHHHHHHHHH
Confidence 11 11 1112333333 45678777655433222111111 1111222221 2222 234456788
Q ss_pred hHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 016266 294 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373 (392)
Q Consensus 294 gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~ 373 (392)
+++++++.+++++++||+++|+... .+.....+..+++ ...+..+ ....++..+++|++.+...+..+++++|.
T Consensus 273 ~i~~iig~~l~~~l~~r~gkk~~~~-~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~l~g~~~~~~~~l~~~m~ad~ 346 (460)
T PRK11462 273 CVGNLIGSALAKPLTDWKCKVTIFW-WTNALLAVISLAM-FFVPMQA----SITMFVFIFVIGVLHQLVTPIQWVMMSDT 346 (460)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHH-HHhchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999887543 2322222221221 1222221 12344555677888888888888888887
Q ss_pred cc
Q 016266 374 FK 375 (392)
Q Consensus 374 ~p 375 (392)
.+
T Consensus 347 ~d 348 (460)
T PRK11462 347 VD 348 (460)
T ss_pred Hh
Confidence 65
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=121.70 Aligned_cols=298 Identities=11% Similarity=0.034 Sum_probs=172.8
Q ss_pred hhhhHHHHHHhhc-----hhHHHHHhhhHHH-HHHHh-hhchhhH-HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 75 FSLVASLVVRVLG-----SKNALILGTTGYW-LFVAA-NLFPSWY-TMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 75 ~~~~~g~l~dr~G-----~r~~l~~g~~~~~-l~~~~-~~~~~~~-~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
..++.|+++||++ ||+.++++.++.+ +.... ...++.. ......++.+++.+...++.-++..|..++
T Consensus 76 ~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~---- 151 (468)
T TIGR00788 76 LKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRE---- 151 (468)
T ss_pred HHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhc----
Confidence 3567999999998 7777777776552 22221 1234433 333478899999999888888888887631
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc-ccccccc
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED-KGEKETA 225 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 225 (392)
+++.++...++.+.....|..+|+.+++.+.+. .+|+.. |.+.+.+.++..+..++++|++. ..++..+
T Consensus 152 ----~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-----~~~~~~-f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~ 221 (468)
T TIGR00788 152 ----SPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-----TLTRIL-FLITAALLLLQLFVSNLSKERRAFVRPRIGT 221 (468)
T ss_pred ----CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-----cCcchH-HHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 333444455566666678888988888776643 368774 55555555554444456666431 1111000
Q ss_pred c-------ccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhh-hHHhhhhhcccchhhhccccccchhhHHHHHHhHHH
Q 016266 226 D-------ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297 (392)
Q Consensus 226 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~ 297 (392)
+ .........++.+++..+.+++|+.+......++. -.......+.|.......+.+.+.+|.+....+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~ 301 (468)
T TIGR00788 222 YLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGS 301 (468)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHH
Confidence 0 00000012234455666777888776533222211 010111111111000112344567899999999999
Q ss_pred HHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHh---ccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhc
Q 016266 298 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI---NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF 374 (392)
Q Consensus 298 ~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~---~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~ 374 (392)
+++..+.+++.+|++.|+. +.++.++..++...... .|......-..+......++.+++.+.......+++.+..
T Consensus 302 i~g~~~~~~~~~~~~~r~~-l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 380 (468)
T TIGR00788 302 LCGVGGYDRFLKTFPYRLL-FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLC 380 (468)
T ss_pred HHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhC
Confidence 9999999999999998874 45666666655321100 1110000000124455567888888888889999999999
Q ss_pred cCCc-cccchhhhh
Q 016266 375 KHDT-VTANPTLIR 387 (392)
Q Consensus 375 p~~~-~~a~~~~~~ 387 (392)
|++. ++.++.+++
T Consensus 381 p~~~egt~~al~~s 394 (468)
T TIGR00788 381 PSGCESSVFALLAS 394 (468)
T ss_pred CCCceehHHHHHHH
Confidence 8655 667776654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-11 Score=120.67 Aligned_cols=271 Identities=14% Similarity=0.015 Sum_probs=139.9
Q ss_pred HHhhhhhhHHHHHHhh----chhHHH-HHhhhHHHHHHHh-hh-----chh--hHHHHHHHHHHhhhHHHHHhhhhHHHH
Q 016266 71 SFTCFSLVASLVVRVL----GSKNAL-ILGTTGYWLFVAA-NL-----FPS--WYTMVPASLYLGFAASIIWVGEGTYLT 137 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~----G~r~~l-~~g~~~~~l~~~~-~~-----~~~--~~~l~~~r~l~Gig~g~~~~~~~~~~~ 137 (392)
..++..++.|.++||. ||||.+ ..+.+...+.... .. .++ ....+..-++.+++.+...++..+...
T Consensus 56 ~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 135 (448)
T PRK09848 56 FDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLAT 135 (448)
T ss_pred HHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhh
Confidence 4467789999999996 777765 4454433322221 11 111 222333456677778777776666555
Q ss_pred HHhhhhhhhcCCCccchhhhhHHHHHHHHH-----HhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH-
Q 016266 138 AAALSHASNHKLHEGTVIGSFNGEFWGMFA-----SHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC- 211 (392)
Q Consensus 138 ~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~-----~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~- 211 (392)
+..+ +++||.+..++-..+.+ .+..+++++........ ..+|.. ...++.+++.+..+
T Consensus 136 ~~~~---------~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~---~~~~~~----~~~~~~v~~~~~~~~ 199 (448)
T PRK09848 136 AMTQ---------QPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM---VSVYHF----WTIVLAIAGMVLYFI 199 (448)
T ss_pred hhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch---hhhHHH----HHHHHHHHHHHHHHH
Confidence 5542 56788887665432222 33334444433211000 001111 11222233332221
Q ss_pred h---ccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccc-hhh
Q 016266 212 F---LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS-GVG 287 (392)
Q Consensus 212 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s-~~~ 287 (392)
. .||+.+ +++ ++++.++. ..+.+|||+++......+......... ....+.+.++.++.+ ..+
T Consensus 200 ~~~~~~e~~~--~~~-------~~~~~~~~---~~~l~~n~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 266 (448)
T PRK09848 200 CFKSTRENVV--RIV-------AQPSLKIS---LQTLKRNRPLFMLCIGALCVLISTFAV-SASSLFYVRYVLNDTGLFT 266 (448)
T ss_pred HHcCcEeccC--CCc-------cCCCHHHH---HHHHhCCchHHHHHHHHHHHHHHHHHH-hhhheeeEeeecCChHHHH
Confidence 1 222211 111 11122322 235678998876554333221111111 112233333334433 223
Q ss_pred -HHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHH
Q 016266 288 -GAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL 366 (392)
Q Consensus 288 -~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~ 366 (392)
.......++.+++.++.+++.||+|+|+.+ .++.++..++.+.. .+.+..+ .+..++..++.|++.+...+..
T Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~-~~g~~~~~i~~~~~--~~~~~~~---~~~~~~~~~l~g~G~~~~~~~~ 340 (448)
T PRK09848 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTF-LIGALLGTCGYLLF--FWVSVWS---LPVALVALAIASIGQGVTMTVM 340 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHH--HHcCchh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566788999999999999988754 46776666664432 2333221 3455566778899999999999
Q ss_pred HHHHHhhccC
Q 016266 367 SALLGILFKH 376 (392)
Q Consensus 367 ~a~~~~~~p~ 376 (392)
+++..|..|.
T Consensus 341 ~al~~~~~~~ 350 (448)
T PRK09848 341 WALEADTVEY 350 (448)
T ss_pred HHHHHHhhhh
Confidence 9999998864
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-14 Score=125.96 Aligned_cols=316 Identities=14% Similarity=0.182 Sum_probs=176.9
Q ss_pred HHHHHhHHHhHhhhccCCCchhHHHHHHHHHHh----hhhhhHHHHHHh-hchhHHHHH-hhhH---HHHHHHhhhchhh
Q 016266 41 FLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRV-LGSKNALIL-GTTG---YWLFVAANLFPSW 111 (392)
Q Consensus 41 ~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~----v~~~~~g~l~dr-~G~r~~l~~-g~~~---~~l~~~~~~~~~~ 111 (392)
|..|+..+.+|.+.+.+.+..+...+..|..|. +.+++.|++.|| +|-|..-++ +.+. -.++.+....+.+
T Consensus 57 yfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aF 136 (459)
T KOG4686|consen 57 YFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAF 136 (459)
T ss_pred eeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 555677888888887776665544555666554 567889999875 555544322 2222 2344555577899
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC--CCC
Q 016266 112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GST 189 (392)
Q Consensus 112 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~--~~~ 189 (392)
++++..|++-|+|.-..-+++++|...|+ ..||.+.++|+..+..-+|..+--.+...+....+. ++.
T Consensus 137 w~M~~GRF~FGIGgESlAVaQN~yav~wF----------KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ 206 (459)
T KOG4686|consen 137 WTMLAGRFLFGIGGESLAVAQNKYAVYWF----------KGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGV 206 (459)
T ss_pred HHHHhhheeeccCchhhhhhhcceeEEEe----------cCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccc
Confidence 99999999999999888899999988776 578999999998777777765533333333221100 001
Q ss_pred Ccchh-HHHHHHHHHH-HHHHHHH---hccCCcc-ccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhh-
Q 016266 190 SGTTL-LFIVFLGVIT-LGTILMC---FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG- 262 (392)
Q Consensus 190 ~wr~~-~f~i~~~~~~-~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 262 (392)
+-... +..++..... ...+.+. ...++.+ .-..+ +.+..+.++.. + .+.+ .|.+|.+..+.+.-.
T Consensus 207 ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e--~g~~Ge~pkLt----d-v~~f-~ppfw~~~iicv~yyv 278 (459)
T KOG4686|consen 207 GHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLE--EGFLGEEPKLT----D-VNTF-YPPFWVLVIICVLYYV 278 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh--cCcccCCcccc----c-cccc-CccHHHHHHHHHHHHH
Confidence 10000 0111111111 1111111 1122111 00011 11111111111 1 1222 356776654322111
Q ss_pred HHhhhhhcccchhhhccccccc--hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCC
Q 016266 263 LQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS 340 (392)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~ 340 (392)
....|+ ...|.+.++.+|.| .++.+.+.....+.+.+++.|.++||.|++...+..+.++...+ .. .+.++
T Consensus 279 a~fPFi--~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~-H~-~l~Ft--- 351 (459)
T KOG4686|consen 279 AWFPFI--TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG-HS-GLFFT--- 351 (459)
T ss_pred HHHHHh--hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH-hh-hHHhh---
Confidence 111111 12355556666765 35556655555578899999999999997754433333333222 11 12232
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhh
Q 016266 341 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTL 385 (392)
Q Consensus 341 ~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~ 385 (392)
++-.++...+.|+..+..-..++.+++.+.|++. ++|++.-
T Consensus 352 ----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~ 393 (459)
T KOG4686|consen 352 ----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFI 393 (459)
T ss_pred ----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHH
Confidence 2456778888999999888888999999998644 8888853
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-10 Score=111.88 Aligned_cols=324 Identities=18% Similarity=0.091 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHHHH----hhhhhhHHHHHHhhc-hhHHHHHhhhHHHHHHHh-hhch
Q 016266 36 AFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF----TCFSLVASLVVRVLG-SKNALILGTTGYWLFVAA-NLFP 109 (392)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~----~v~~~~~g~l~dr~G-~r~~l~~g~~~~~l~~~~-~~~~ 109 (392)
-.++.|..+.......+.+-++.+.+....++.+... .+++++.|.++||.+ +||.+.+..++-++.... ...+
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~ 89 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444443333343334445545555544433 456788999999986 567776655544433322 2455
Q ss_pred hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHh-hhhhccCCCCCC
Q 016266 110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI-TLAVLKDDKGGS 188 (392)
Q Consensus 110 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i-~~~~~~~~~~~~ 188 (392)
+++.++..-++..+...+..+..-++..++.+ ++++-+|-.-.-.++|-+++... ...+....+
T Consensus 90 ~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~------------~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~--- 154 (400)
T PF03825_consen 90 SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG------------DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLG--- 154 (400)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc------------cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhc---
Confidence 66666655566666655555544444433331 22222232222234554444332 111111111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhh
Q 016266 189 TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFV 268 (392)
Q Consensus 189 ~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 268 (392)
.+.....+.+..+..++.....+.+++.+++++++++ .+ +...++..+++|||+++......+..+.....+
T Consensus 155 ~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~----~~----~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~ 226 (400)
T PF03825_consen 155 ISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKES----VK----KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAY 226 (400)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCC----cc----cccchHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 1111112333333333222223445554321111110 01 011124457889999876655544455444433
Q ss_pred hcccchhhhccccc---cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccch
Q 016266 269 WAEFTKEIVTPALG---VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGT 345 (392)
Q Consensus 269 ~~~~~~~~~~~~~g---~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 345 (392)
++....++. +.| .+.++.+.++..+++++.=.+.+++.+|+|.|+. +.++.+..++=..+ ..+.+++.....
T Consensus 227 ~~f~~~yl~--~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-l~~a~~~~~vR~~l--~a~~~~~~~~~~ 301 (400)
T PF03825_consen 227 YTFFSIYLQ--ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-LLLALVAYAVRWLL--YAYFSDPWPFIV 301 (400)
T ss_pred HHHHHHHHH--HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHH--HHHhcCCcHHHH
Confidence 332222222 233 2356666677778888888899999999998864 45677666655432 233322210000
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhhhh
Q 016266 346 LYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTLIR 387 (392)
Q Consensus 346 ~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~~~ 387 (392)
+...+...+-|++.+........++.+..|++. +++++.|..
T Consensus 302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~ 344 (400)
T PF03825_consen 302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSA 344 (400)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 112223457999999999999999999998644 778888763
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-10 Score=113.49 Aligned_cols=307 Identities=8% Similarity=-0.027 Sum_probs=159.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHhh-chhHHHHHhhhHHHHHHHh-hhch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAA-NLFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~-G~r~~l~~g~~~~~l~~~~-~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
.+.+.....+++++.|+++||+ ||||++.++.++..+.... ...+ +...++..-.+.++|.|...+...++++|..+
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp 130 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYE 130 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCC
Confidence 3444444456788999999999 9999999999887665433 2211 11222333334445666666666777888762
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcccc-
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG- 220 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~- 220 (392)
. ++++|+.++++++...++|..+++.+...+.+. .||+.. |.+.++..+++++..++.++..++.
T Consensus 131 ~--------~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-----~Gw~~~-F~iaaigm~l~li~~~~~~~~l~~~~ 196 (493)
T PRK15462 131 P--------TDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-----YSWAMG-FGLAAVGMIAGLVIFLCGNRHFTHTR 196 (493)
T ss_pred C--------CCccccceehHHHHHHHHHHHHHHHHHHHHHhh-----hChHHH-HHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 0 123799999999999999999999988877543 368774 4444444444444443333221110
Q ss_pred ccccccccchhhh--------------------hHHHHH----------------HHHH-Hhh--cc-chhHHHHHHHH-
Q 016266 221 EKETADASVNFYS--------------------YLVSLS----------------KSIT-TLL--AD-VRMLLIIPLFA- 259 (392)
Q Consensus 221 ~~~~~~~~~~~~~--------------------~~~~~~----------------~~~~-~~~--~~-~~~~~l~~~~~- 259 (392)
..+.++.++++.. ...+.. .... +.. .+ +|++...+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~ 276 (493)
T PRK15462 197 GVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF 276 (493)
T ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHH
Confidence 0000000000000 000000 0000 001 01 23332222221
Q ss_pred ----hhhHHhhhh-hcccchhhhccc-cccc-hhhHHHHHHhHHHHHHHhhhhhhccCCCC--ch---h-hHHHHHHHHH
Q 016266 260 ----YSGLQQAFV-WAEFTKEIVTPA-LGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPS--IT---F-IVSGGAIAQV 326 (392)
Q Consensus 260 ----~~g~~~~~~-~~~~~~~~~~~~-~g~s-~~~~~~~~~gi~~~~g~~~~G~lsd~~g~--r~---~-~~~~g~~~~~ 326 (392)
+..+++... .+.|.....+.+ .|.+ ......++..+..++.+++.+++=.|..| |. + -+.+|.++..
T Consensus 277 ~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g 356 (493)
T PRK15462 277 SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMS 356 (493)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 111222211 112222211111 2222 24555666677677777776666333321 11 1 1346777777
Q ss_pred HHHHHHHh-cc-ccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhh
Q 016266 327 VVFLWILI-NY-SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTL 385 (392)
Q Consensus 327 i~~~~~~~-~~-~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~ 385 (392)
++++.+.+ .. .......+.+++++..+++++|.-+..|.-.+.++++.|++- +.-++.+
T Consensus 357 ~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w 418 (493)
T PRK15462 357 AGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIY 418 (493)
T ss_pred HHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHH
Confidence 77543211 11 111111124567788889999999999999999999999643 4455543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-11 Score=113.68 Aligned_cols=325 Identities=11% Similarity=0.114 Sum_probs=166.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHh-HhhhccCCCchhHHHHHHHHHHh----hhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNL-ETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~~g~~~~~~~~~~~~----v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
++.++.+.++.-+++.|.++...... +.-+++..+++....++.+.+.+ +.+++.|.+.||+|.||-++....+.
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL 83 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence 44567778888888777777654433 33333334555555666655443 56788899999999777655443322
Q ss_pred HH----HHHhhh----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhh
Q 016266 100 WL----FVAANL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQF 171 (392)
Q Consensus 100 ~l----~~~~~~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~ 171 (392)
.+ +..-.+ ..|... .-++.|+..+..+.+.........+|++...+ .+=-|.|.-| ++|.+
T Consensus 84 ~~l~~pff~~v~~pll~~n~~l---g~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~--feYG~~R~wG------Sig~a 152 (412)
T PF01306_consen 84 LLLFGPFFIYVFGPLLQSNFWL---GAIIGGIYLGLVFNAGVPLSEAYAERVSRRNG--FEYGRARMWG------SIGFA 152 (412)
T ss_dssp HHTCHHHHHHTHHHHHHTT-HH---HHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHS--S-HHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccchHHHHHHHHHHHHhc--CCcchHHHHh------hHHHH
Confidence 21 111111 223221 22333333333333333333334433332222 1112344444 56666
Q ss_pred hhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchh
Q 016266 172 VGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRM 251 (392)
Q Consensus 172 ~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (392)
++..+++.+.... ....|++..+.+++..++.+..|++.+++.+.. +.+..+++ +...++..+.+|+|++
T Consensus 153 i~s~~~G~L~~i~-------p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 153 IASLLAGILFNIN-------PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-DALGAKKD--KVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-TTSSS--------HHHHHHHTTSHHH
T ss_pred HHHHHhheeeeeC-------ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-cccccCCC--CCcHHHHHHHhcchhH
Confidence 6666665554311 122355444443333333344443222111110 00000111 1234667789999999
Q ss_pred HHHHHHHHhhh-HHhhhh--hcccchhh-hccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHH
Q 016266 252 LLIIPLFAYSG-LQQAFV--WAEFTKEI-VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVV 327 (392)
Q Consensus 252 ~~l~~~~~~~g-~~~~~~--~~~~~~~~-~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i 327 (392)
|.+........ ....+- .+.|...+ .+.+.|.+..|++.++--+.+++.=.+..++.+|+|.|+.+++. ...+.+
T Consensus 223 w~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla-g~i~~i 301 (412)
T PF01306_consen 223 WFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA-GVIMAI 301 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH-HHHHHH
Confidence 87654332111 111111 12222222 22334445678888888888888888999999999999876544 434444
Q ss_pred HHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc
Q 016266 328 VFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~ 378 (392)
=.. ...+.++ .+.+.+.-.+-|+-.........-++++.+|++-
T Consensus 302 Ri~--~~~~~~~-----~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl 345 (412)
T PF01306_consen 302 RII--GSGFATN-----PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL 345 (412)
T ss_dssp HHH--HHHT--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHH--HHhhhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH
Confidence 422 2345555 3677778889999999999999999999998655
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.5e-11 Score=114.69 Aligned_cols=279 Identities=12% Similarity=0.071 Sum_probs=164.9
Q ss_pred hhhhhhHHHHHHh----hchhHHHHH-hhhHHHHHHHh-hhchh------hHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 73 TCFSLVASLVVRV----LGSKNALIL-GTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 73 ~v~~~~~g~l~dr----~G~r~~l~~-g~~~~~l~~~~-~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
++.-|+.|.++|| +||||.+++ +.+.+++.... ...|+ ....++..++.+++......+-.+..+++.
T Consensus 62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT 141 (467)
T COG2211 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT 141 (467)
T ss_pred HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence 5677899999885 787777654 44666665544 34442 334455678889988888777777777776
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCC--CCCcchhHHHHHHHHHHHHHHHH-HhccCCc
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG--STSGTTLLFIVFLGVITLGTILM-CFLRKEE 217 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~--~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~ 217 (392)
+ +++||.+..++-+.....|..+-..+...+....+++ ..||+.+ .+++++++++..+.. +-+||+.
T Consensus 142 ~---------d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~-~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 142 Q---------DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGT-ALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhccc
Confidence 4 6789999998877666766555444443333333222 3466543 233333333332222 2345543
Q ss_pred cccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccccc--hhhHHHHHHhH
Q 016266 218 DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGA 295 (392)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~s--~~~~~~~~~gi 295 (392)
.+..+.++ ..+.++++. ....++|+.++.+..+.++........ +....++.+..+|.. ...........
T Consensus 212 ~~~~~~~~----~~~~~~~~~---~~~~~~Nrp~~~~l~~~l~~~~~~~i~-~s~~~yy~~y~lg~~~l~~~~~~~~~~~ 283 (467)
T COG2211 212 VETQPTKT----GVKLKLKDS---FLLIFKNRPLLLLLLMNLLLFIAFNIR-GSIMVYYVTYVLGDPELFAYLLLLASGA 283 (467)
T ss_pred CccccCcc----cccccHHHH---HHHHHccchHHHHHHHHHHHHHHHHHH-hhhhheeEEEEcCChHHHHHHHHHHHHH
Confidence 32211110 011222322 224678888877666444332211111 111112222223432 34455666777
Q ss_pred HHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhcc
Q 016266 296 FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK 375 (392)
Q Consensus 296 ~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p 375 (392)
+.+++.++..++++|+|+|+. ...+.++.+++.+.. +.+++++ .+..++..++.+++.+..++..+++++|..+
T Consensus 284 ~~l~~~~~~p~L~~~~gkk~~-~~~~~~~~~i~~~~~-~f~~~~~----~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD 357 (467)
T COG2211 284 GLLIGLILWPRLVKKFGKKKL-FLIGLLLLAVGYLLL-YFTPAGS----VVLIVVALIIAGVGTGIANPLPWAMVADTVD 357 (467)
T ss_pred HHHHHHHhHHHHHHHhchHHH-HHHHHHHHHHHHHHH-HhhcCcc----hHHHHHHHHHHHHHhhccccccHHHhcchhh
Confidence 777779999999999999985 456777777776543 2233232 3567777789999999999999999999864
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-10 Score=104.82 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=90.4
Q ss_pred HHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH-hhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 67 ~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~-~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
..+..+.+++-..|.++|++|||+...+....-++... +...||+..++..|.+.|+|.|+ .|...+.-.+.-
T Consensus 121 ~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~l----- 194 (528)
T KOG0253|consen 121 SVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFL----- 194 (528)
T ss_pred HHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhc-----
Confidence 34445668888999999999999999988877665443 46889999999999999999988 343333222332
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE 217 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~ 217 (392)
|..+|+.-+-.. +-+..|++....++.++... +|||+.++.....+++.+ ...+.++|.+
T Consensus 195 -----p~~~r~~~~V~~-~~waig~v~ea~law~vm~~-----~gwr~~l~~~~~pl~~~a-~f~~w~~ESp 254 (528)
T KOG0253|consen 195 -----PSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-----FGWRYLLFTSSTPLMFAA-RFLVWVYESP 254 (528)
T ss_pred -----cCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHhHHHHHH-HHHhhcccCc
Confidence 666777655444 55688888888888777654 479885454443333332 3334455543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-08 Score=92.89 Aligned_cols=233 Identities=14% Similarity=0.065 Sum_probs=126.5
Q ss_pred CCchhHHHHHHHH----HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhh-h
Q 016266 58 GNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVG-E 132 (392)
Q Consensus 58 ~~~g~~~~~~~~~----~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~-~ 132 (392)
.+...-.++..|. +..+...+.|.++||+|||+..++-++++.+..+....+++..+++.|++.|++.+..+.+ .
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444334444433 3345667889999999999999999998888777767799999999999999999998886 4
Q ss_pred hHHHHHHhhhhhhhcCCCccchhhhhHHHHH-HHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~-~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
.=++.|+.++ ++ |++..+.-++... ...+.-.+..++++..+.+..+ .|-.. .|.....+.+++.++..
T Consensus 144 sW~V~Eh~~~-----g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---~g~va-PF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 144 SWMVHEHNKR-----GF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG---FGPVA-PFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHc-----CC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---CCCcc-hHHHHHHHHHHHHHHHH
Confidence 4455565432 22 3333333332111 1112222333344433333221 12222 35554444444433322
Q ss_pred hccCCccccccccccccchhhhhHHHHHHHHHH-hhccchhHHHHHHHHh-hhHHhhhhhcccchhhhccccccchhhHH
Q 016266 212 FLRKEEDKGEKETADASVNFYSYLVSLSKSITT-LLADVRMLLIIPLFAY-SGLQQAFVWAEFTKEIVTPALGVSGVGGA 289 (392)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~s~~~~~ 289 (392)
...++++...++ ..+.++.+++..+ .++|||.+.+...-.+ =+....|+ -.++|.+..++- .-.-|.+
T Consensus 214 ~~W~ENyg~~~~--------~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FV-flWtPaL~~~~~-~~P~GlI 283 (354)
T PF05631_consen 214 KTWPENYGDTSS--------SSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFV-FLWTPALDPDDE-ELPLGLI 283 (354)
T ss_pred hcccccCCCccc--------ccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhe-eeeeceecCCCC-CCCchHH
Confidence 222221111111 1112223333333 4568998877654322 22223332 234454432111 1236888
Q ss_pred HHHHhHHHHHHHhhhhhhccC
Q 016266 290 MAVYGAFDAICSLAAGRLTTG 310 (392)
Q Consensus 290 ~~~~gi~~~~g~~~~G~lsd~ 310 (392)
.+.+-++.++|+.+..++..+
T Consensus 284 FssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 284 FSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 888889999999999876544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-09 Score=98.08 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=158.0
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHhhhHHHH-HHHh--hhch--hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 72 FTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAA--NLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l-~~~~--~~~~--~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
.++..++.|.++|+.|+||-..-......+ +.++ ...+ .++..+..-++..++.....+...+++.+..
T Consensus 71 ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~------ 144 (438)
T COG2270 71 IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLT------ 144 (438)
T ss_pred HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhc------
Confidence 356678899999999988887665554433 2222 2334 4556666778888887777777777777765
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhh--hhhcc-----------CCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLIT--LAVLK-----------DDKGGSTSGTTLLFIVFLGVITLGTILMCFL 213 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~--~~~~~-----------~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~ 213 (392)
++++-|+..+.-|....+|+.+-.++. ..... ...+.+..-|.+.-+...-..+.++.+.+.+
T Consensus 145 ----~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v 220 (438)
T COG2270 145 ----TKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNV 220 (438)
T ss_pred ----CccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcc
Confidence 444555555555544444444433321 11110 0000112223321111111112233444555
Q ss_pred cCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHH--HHHhhhHHhhh-hhcccchhhhccccccc--hhhH
Q 016266 214 RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP--LFAYSGLQQAF-VWAEFTKEIVTPALGVS--GVGG 288 (392)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~~-~~~~~~~~~~~~~~g~s--~~~~ 288 (392)
+++++...++ +..-..++++...+..+..+++....... +++..|..... ..+.|.. ..+|.+ +...
T Consensus 221 ~~~~~~~~~~----~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~----~~~gls~~~lll 292 (438)
T COG2270 221 HDAEKISSPP----PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA----ADLGLSSTELLL 292 (438)
T ss_pred cccccccccc----hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH----HHcCccHHHHHH
Confidence 5544321011 00011233332222233444444433222 22223433222 1223322 234444 5566
Q ss_pred HHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHH
Q 016266 289 AMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSA 368 (392)
Q Consensus 289 ~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a 368 (392)
+....++.+++|+++.|+|.||+|.|+.+ .++.++..+..+. ......+ ..++++..+.|++.|..+...=+
T Consensus 293 ~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-~~~lvi~~~~~~~--~~~~~~~-----~~f~i~gll~g~s~G~~qA~SRS 364 (438)
T COG2270 293 IGIALSVVAALGAIIAGFLDERFGSKPVL-MIGLVILSIAALY--LIFLEGE-----LDFWILGLLVGTSLGGAQASSRS 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceee-hHHHHHHHHHHHH--HHHcccc-----HHHHHHHHHHHHhcchHHHHHHH
Confidence 66788889999999999999999988654 4555544443222 2222221 56788889999999999999999
Q ss_pred HHHhhccCCccc-cchhhh
Q 016266 369 LLGILFKHDTVT-ANPTLI 386 (392)
Q Consensus 369 ~~~~~~p~~~~~-a~~~~~ 386 (392)
+.+++.|++++. .+++|+
T Consensus 365 y~~~lvp~~k~~~fFglya 383 (438)
T COG2270 365 YLARLVPKGKEGRFFGLYA 383 (438)
T ss_pred HHHHhCCCccccceeehhh
Confidence 999999987754 888886
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=113.84 Aligned_cols=128 Identities=12% Similarity=0.032 Sum_probs=98.3
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++++++|+++||+|||++++++.++.+++.+. .+.++...+++.+++.|++.++.++....+++++.
T Consensus 607 ~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~--------- 677 (742)
T TIGR01299 607 AVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY--------- 677 (742)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 34567889999999999999999988877766554 35566666777888999988888998888999886
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
|.++||+++|+..+...+|.++|+.+...+.... ....+.+.+++.+++.++.+++||
T Consensus 678 -Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-------~~~pf~i~a~~lll~~ll~~~LPE 735 (742)
T TIGR01299 678 -PSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-------KAAPILFASAALACGGLLALKLPD 735 (742)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8889999999999999999999998877654321 223355666666666665566654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=105.35 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=96.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+.+.....++.++.|++.||+|+|+.+..+..+..+.... ...++...++..+++.|++.+..++.......+..
T Consensus 256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~---- 331 (399)
T PRK05122 256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV---- 331 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence 3344445567889999999999999998887766554443 34566666777889999999988776655555543
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
|+++||+++|++......|..+++.+.+.+.++ .||+.. +.+.+++.+++.+..++++++
T Consensus 332 ------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 332 ------PPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----FGYPSI-FLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence 788999999999988888988888777666543 256653 555555556665555555543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=89.45 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=95.3
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCC
Q 016266 72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 150 (392)
..+++++.|++.||+|||+.+..+.....+.... ...++++.+...+++.|++.+...+....++.|..
T Consensus 11 ~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------- 80 (141)
T TIGR00880 11 QLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY---------- 80 (141)
T ss_pred HHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC----------
Confidence 4467788999999999999999888776655443 35577888888999999999998888888888876
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 151 ~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
|+++|++.+++.......|..+|+.+...+.+. .+|+.. +.+.....+++.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-----LGWRAP-FLFLAILALAAFILLA 135 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-----cchHHH-HHHHHHHHHHHHHHHh
Confidence 778999999999999999999999888776543 357664 5555554444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-08 Score=93.33 Aligned_cols=275 Identities=16% Similarity=0.096 Sum_probs=155.8
Q ss_pred hhhhhhHHHHHHhhc-----hhHHHHHhhhHH-HHHH-Hh-----hhch--------hhH---HHHHHHHHHhhhHHHHH
Q 016266 73 TCFSLVASLVVRVLG-----SKNALILGTTGY-WLFV-AA-----NLFP--------SWY---TMVPASLYLGFAASIIW 129 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G-----~r~~l~~g~~~~-~l~~-~~-----~~~~--------~~~---~l~~~r~l~Gig~g~~~ 129 (392)
+...+..|+.+|+.+ ||..+++..... +... +. .... .+. .....-.+.|+|.+..-
T Consensus 28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~ 107 (403)
T PF03209_consen 28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG 107 (403)
T ss_pred HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence 345677899999999 888887665432 2211 11 1122 222 22233455676666555
Q ss_pred hhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 016266 130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL 209 (392)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~ 209 (392)
++-.+.++|.. |||+|+++.++.|.+...|.+++.++.+.+.+... -.+. ..+.....++..++
T Consensus 108 T~~lALl~D~~----------~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s-----~~rL-~~v~~~~a~i~~~l 171 (403)
T PF03209_consen 108 TSFLALLADLA----------PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS-----PERL-IQVIQGVALIALLL 171 (403)
T ss_pred HHHHHHHHhcC----------CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC-----HHHH-HHHHHHHHHHHHHH
Confidence 55555555554 89999999999999999999999988777665432 1121 22222222222222
Q ss_pred ----HHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcc--cchhhhcc--cc
Q 016266 210 ----MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAE--FTKEIVTP--AL 281 (392)
Q Consensus 210 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~--~~~~~~~~--~~ 281 (392)
.+-..++++...++ +..+++++++..+ +.+.+|+...++...+ .+. .++...+ ..|+ ..+ ++
T Consensus 172 ~~ia~wg~E~r~~~~~~~----~~~~~~~f~~a~~---~~~~~~~a~~f~~fl~-l~t-~a~~~QD~iLEPy-gg~Vfgm 241 (403)
T PF03209_consen 172 NLIALWGQEPRRSRRAAA----AERPRPPFREAWR---QVWASPQARRFFVFLF-LGT-LAFFMQDVILEPY-GGEVFGM 241 (403)
T ss_pred HHHHHHhcccCCcccccC----CCCCCccHHHHHH---HHHhCCChhHHHHHHH-HHH-HHHHhhHHHcCCc-hhHHcCC
Confidence 12222221111101 1112334444443 4456776654433221 211 1221111 1222 112 23
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhcc-CCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhh
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTT-GLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd-~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
.+++.--+....+.+..+|-.+.|++.. |.++++ ....|+...++++.++.+.-...+ .+.+....+++|++.|
T Consensus 242 sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-~a~~G~~~~~~~f~lii~a~~~~~----~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 242 SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-TAALGCLLGALAFALIILAGPLGS----PWLFRPGVFLLGLGNG 316 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHhhh
Confidence 3445666778888888888888888866 455554 455788777777654322222222 3678888899999999
Q ss_pred hhhhHHHHHHHhhccCCc
Q 016266 361 VLNTQLSALLGILFKHDT 378 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~~~ 378 (392)
.+....-+..-|+.++++
T Consensus 317 ~f~vgals~mM~lt~~~~ 334 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGR 334 (403)
T ss_pred HHHHHHHHHHHhCCCCcc
Confidence 999888888888886544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=105.49 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=97.7
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hh-ch---hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL-FP---SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~-~~---~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
...++.++.|++.||+|+|+++.++.++.++.... .. .+ ++..+++.+++.|++.+...+....+++++.
T Consensus 263 ~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~----- 337 (418)
T TIGR00889 263 SEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV----- 337 (418)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 34466788999999999999999999877665432 22 22 2355677899999999988888788888876
Q ss_pred hcCCCccchhhhhHHHHH-HHHHHhhhhhhHhhhhhccCCCC-CCCCcchhHHHHHHHHHHHHHH-HHHhccCC
Q 016266 146 NHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKG-GSTSGTTLLFIVFLGVITLGTI-LMCFLRKE 216 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~-~~~~~g~~~G~~i~~~~~~~~~~-~~~~wr~~~f~i~~~~~~~~~~-~~~~~~~~ 216 (392)
|+++||+++|+.. ...++|..+|+.+++.+.++.+. +..||+.. |.+.+++.++..+ ..+++||+
T Consensus 338 -----p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~-f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 338 -----PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTM-WLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred -----CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCc
Confidence 7889999999986 56788999999998877765421 12468764 5555555554444 34566665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-09 Score=101.85 Aligned_cols=133 Identities=17% Similarity=0.033 Sum_probs=89.7
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+.......++.++.|++.||+|||+.+..+.+...+.... ...++...+....++.|++.+...+...++..+..
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 337 (406)
T PRK11551 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY---- 337 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc----
Confidence 3333445677889999999999999988766554443332 24455555666778888877766666666666664
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL 213 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~ 213 (392)
|+++||+.+|+......+|..+|+.+.+.+.++. ++....+.+...+.+++.++.+.+
T Consensus 338 ------p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 338 ------PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-----RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ------chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----CchHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999888776542 222333444444444444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=98.82 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=89.1
Q ss_pred HHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
....++.++.|+++||+|||+.+..+.....+.... ...+++..++..+.+.+++.+...+....+..|..
T Consensus 263 ~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~-------- 334 (393)
T PRK15011 263 GLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM-------- 334 (393)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 334456789999999999999887766544333222 23456666677888888877776665556666653
Q ss_pred CCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 149 ~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
| ++||++++++......|..+|+.+++.+.++ .+|+.. +.+..++.+++.+..+++||
T Consensus 335 --p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 335 --P-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----WNYHAV-FWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred --C-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHH-HHHHHHHHHHHHHHHHhhcC
Confidence 4 5799999998888889999999988877653 357653 45555555555555555554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=99.37 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=93.3
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...+++++.|++.||+|+|+.+..+..+..+.... ...++...+++..++.|++.+...+.....+.+..
T Consensus 261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------- 331 (392)
T PRK12382 261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV--------- 331 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---------
Confidence 34567789999999999999998887766554443 34566666777889999998887776666655554
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
|+++||+++|++......|..+|+.+.+.+.++. ||+.. |.+.+++.+++.+..+
T Consensus 332 -~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 332 -PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-----GYPSV-FLAGAISAVLGIIVTI 386 (392)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHH-HHHHHHHHHHHHHHHH
Confidence 7889999999999989999999998888776543 57664 5555555555555443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=100.10 Aligned_cols=143 Identities=17% Similarity=0.064 Sum_probs=90.8
Q ss_pred HHHHHHHhhhhhhHHHHHHhhch-hHHHHHhhhHHHHHHHhh-----hch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 66 GILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVAAN-----LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~-r~~l~~g~~~~~l~~~~~-----~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
+..-...+++++..|.-..|.|. |+.++.|.++..+..+.. ..+ .-+.++.+|++.|+|.|...+ .-+|+++
T Consensus 78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~ 156 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV-LRAYIAD 156 (488)
T ss_pred HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH-HHHHHHh
Confidence 33434455667778888888885 888888887765544432 233 457888999999999876533 4667777
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCC-----CCc--chhHHHHHHHHHHHHHHH-H
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGS-----TSG--TTLLFIVFLGVITLGTIL-M 210 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~-----~~w--r~~~f~i~~~~~~~~~~~-~ 210 (392)
.+ ..++|-++++....+..+|.++|+.+...+......+. ..| -+..-++..++.++..++ .
T Consensus 157 ~s----------~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 157 AS----------TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred cc----------CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 65 45788888888877778888888877665544332110 111 111234555555655554 3
Q ss_pred HhccCCccc
Q 016266 211 CFLRKEEDK 219 (392)
Q Consensus 211 ~~~~~~~~~ 219 (392)
++++|..++
T Consensus 227 ~~f~E~~~~ 235 (488)
T KOG2325|consen 227 FFFKEVYRG 235 (488)
T ss_pred hheeecccC
Confidence 567775543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-07 Score=92.46 Aligned_cols=128 Identities=8% Similarity=0.002 Sum_probs=94.9
Q ss_pred hhhhhHHHHHHhh-chhHHHHHhhhHHHHHHHhh-hc--hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 74 CFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 74 v~~~~~g~l~dr~-G~r~~l~~g~~~~~l~~~~~-~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
+..++.|+++||+ |+|+++.+|.+++.++.... .. .....++++=++.++|.|.+-+...+.+.+..++
T Consensus 76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~------- 148 (498)
T COG3104 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK------- 148 (498)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCC-------
Confidence 4568899999995 99999999999988876643 33 3466667777888899999999888888888643
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
.+.+|-..+++++++.+.|+.+++++...+.+.. ||.. .|-..++-+..+++.+...|+
T Consensus 149 -~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-----g~~~-gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 149 -DDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-----GWHV-GFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred -CCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-----CHHH-HHHHHHHHHHHHHHHHHHccc
Confidence 2234777788888888999999998887776543 4543 355555555667666655554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-08 Score=93.55 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=88.4
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCc
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE 151 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (392)
..+.++.|++.||+|||+++.++.++..+.... ...++.+.++..+++.|++.+...+....+..+..
T Consensus 249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~----------- 317 (375)
T TIGR00899 249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM----------- 317 (375)
T ss_pred HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence 345678999999999999988876654443332 24466666677889999998887776666666653
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 152 ~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
|++|++++|++.....+|..+|+.+.+.+.+.. +|+.. +.+.+++.+++.+...+++
T Consensus 318 ~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 318 PGRAGAATTLYTNTGRVGWIIAGSVGGILAERW-----SYHAV-YWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchhH-HHHHHHHHHHHHHHHheec
Confidence 356789999998888899999998888776542 46553 5555555555555544444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-08 Score=97.24 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=83.1
Q ss_pred HHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH---hh-hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA---AN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~---~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
....++.++.|+++||+|||+++..+.++..+... .. ..++...+++.+++.|++.+........++.+.+
T Consensus 297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~----- 371 (490)
T PRK10642 297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF----- 371 (490)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 34456778899999999999999888764432221 11 2345666777889988877766666666666665
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED 218 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~ 218 (392)
|++.||+++|+.+.....+..+++.+...+.... .+|+.+ ++...+..+++.+..++++|+++
T Consensus 372 -----p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----~~~~~~-~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 372 -----PTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----QNLMMP-AYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred -----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHH-HHHHHHHHHHHHHHHHHhccccC
Confidence 8899999999754444444455665554443321 135543 33334444455555556676543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.1e-08 Score=91.81 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=96.9
Q ss_pred HHHhhhhhhHHHHHHhhchhH-HHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhc
Q 016266 70 TSFTCFSLVASLVVRVLGSKN-ALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH 147 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~-~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~ 147 (392)
....++.++.+++.||+|||+ .+..+..+..+.... ...+++..++...++.|++.+..++....++.+..
T Consensus 222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------- 294 (352)
T cd06174 222 LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA------- 294 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhc-------
Confidence 344567788999999999999 888888777665554 35566777788899999999999998888888775
Q ss_pred CCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 148 ~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
|+++||+.+|+.......|..+++.+...+.+. .+|+.. +.+.+++.+++.+..
T Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-----~~~~~~-~~~~~~~~~i~~i~~ 348 (352)
T cd06174 295 ---PPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-----GGYGGV-FLILAALALLAALLL 348 (352)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcchH-HHHHHHHHHHHHHHh
Confidence 778999999999999999999999988877653 356653 555555555554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-08 Score=92.75 Aligned_cols=120 Identities=7% Similarity=0.032 Sum_probs=91.4
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCc
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE 151 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (392)
.+..++.+++.||+|+|+.+.++.+...+.... ...++.+.++..++++|++.+..+++...|+.+. |
T Consensus 254 i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-----------~ 322 (382)
T TIGR00902 254 IIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-----------P 322 (382)
T ss_pred HHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------C
Confidence 345577889999999999999998887765544 3678888888899999999999999987777653 6
Q ss_pred cchhhhhHHHHH-HHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 152 GTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 152 ~~~rg~~~g~~~-~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
+++|++..+++. .....|..+|+.+++.+.++. +. . .|.+.+++.+++.++.
T Consensus 323 ~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-----g~-~-~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 323 GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-----GA-G-TFVFMAIIAAAAFFLI 375 (382)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH-H-HHHHHHHHHHHHHHHH
Confidence 678899999875 456788999999998887653 33 2 3556666655554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-08 Score=96.02 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=92.3
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCc
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE 151 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (392)
.++.+..|++.||+|||+.+..+..+..+.... ...++.+.+++.+++.|++.+...+...+++.+.. |
T Consensus 272 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~ 341 (408)
T PRK09874 272 LLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS----------S 341 (408)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC----------C
Confidence 355677899999999999998887765554443 34566677778899999999988887766665543 6
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 152 ~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
+++||+.+|+......+|..+|+.+++.+.+. .+|+.. |.+.+++.+++.+..+.
T Consensus 342 ~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-----~g~~~~-f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 342 NQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-----YGFRAV-FLVTAGVVLFNAVYSWN 396 (408)
T ss_pred cccceeeehHHHHHHHHHHHhhHHHHHHHHhh-----cchhHH-HHHHHHHHHHHHHHHHH
Confidence 78899999999988999999999998877653 356664 66666666665554433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-08 Score=95.94 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=93.1
Q ss_pred HHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhc
Q 016266 69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH 147 (392)
Q Consensus 69 ~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~ 147 (392)
.....++.++.|++.||+|+|+.+..+..+.++.... .+.++.+.++..+++.|++.+...+...+++.+..
T Consensus 272 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~------- 344 (420)
T PRK09528 272 VFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF------- 344 (420)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 3345677889999999999999998888777665443 35677787888899999998887777677777665
Q ss_pred CCCccchhhhhHHH-HHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccC
Q 016266 148 KLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRK 215 (392)
Q Consensus 148 ~~~~~~~rg~~~g~-~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~ 215 (392)
|++.|+...+. +.....+|..+|+.+.+.+.+. .||+.. |.+.+++.+++.++. ..+|+
T Consensus 345 ---~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-----~G~~~~-f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 345 ---DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-----IGFQGT-YLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred ---CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-----hCchHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 67778877654 4555678888888887777653 357764 555555555444433 34444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=94.37 Aligned_cols=123 Identities=12% Similarity=-0.055 Sum_probs=85.6
Q ss_pred HHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchh--hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPS--WYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 67 ~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~--~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.......+++++.|++.||+|||+.+.++..+..+.... ...++ ...++...++.|++.+...+....++.|..
T Consensus 248 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~--- 324 (377)
T TIGR00890 248 ISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF--- 324 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh---
Confidence 333344567889999999999999998887766554443 23332 223445567788887776666566666665
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHH
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL 205 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~ 205 (392)
|+++||++.|++.....+|..+|+.+.+.+.++ .||+.. |.+.+++.++
T Consensus 325 -------~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~-f~~~~~~~~~ 373 (377)
T TIGR00890 325 -------GPANSAANYGFLYTAKAVAGIFGGLIASHALTE-----IGFEYT-FIVTGAFALT 373 (377)
T ss_pred -------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-----hchhhH-HHHHHHHHHH
Confidence 788999999999999999999999888777653 357653 4444444333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=91.09 Aligned_cols=124 Identities=14% Similarity=-0.022 Sum_probs=82.5
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHH--HhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFV--AANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~--~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
...+++++.|++.||+|||+... +..+..+.. .....++...+++..++.|++.+...+....++.+.
T Consensus 253 ~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~--------- 322 (390)
T PRK03545 253 AGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKL--------- 322 (390)
T ss_pred HHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHh---------
Confidence 44567788999999999887543 333332222 122445666667788888988766555444444443
Q ss_pred CCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 149 ~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
.+++||+++|++.....+|..+|+++++.+.++. +++.. +.+..++.+++.+....
T Consensus 323 --~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-----g~~~~-~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 323 --APDATDVAMALFSGIFNIGIGAGALLGNQVSLHL-----GLSSI-GYVGAALALAALVWSIL 378 (390)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ChhHH-HHHHHHHHHHHHHHHHH
Confidence 3468899999998888999999999988877543 56653 55555555665555433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-07 Score=91.05 Aligned_cols=282 Identities=17% Similarity=0.157 Sum_probs=158.5
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhH--HHHHhhhhHHHHHHhhhhhhhcCCCc
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAA--SIIWVGEGTYLTAAALSHASNHKLHE 151 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (392)
+..+..|.++||+|||..+.+...+..+.........|+.++ +.|+.. +..+....+|+++.. .
T Consensus 77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a~vadis----------~ 142 (463)
T KOG2816|consen 77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFAYVADIS----------S 142 (463)
T ss_pred HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhhheeecc----------c
Confidence 567888999999999999999988777666554334455544 444433 233445666777765 5
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCccccccc-ccccc-
Q 016266 152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKE-TADAS- 228 (392)
Q Consensus 152 ~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~- 228 (392)
+++|...+|+.......+..+|+.++....+..+ - ...+.+..+..+++.+.. ++++|+.+++.++ .+..+
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-----~-a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~ 216 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-----I-ALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL 216 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-----c-hHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc
Confidence 6799999999988888888899888887765431 2 223555555555555543 5566654433222 11000
Q ss_pred ---chhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhc--cccccchhhHHHHHHhHHHHHHHhh
Q 016266 229 ---VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAICSLA 303 (392)
Q Consensus 229 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~g~s~~~~~~~~~gi~~~~g~~~ 303 (392)
........+.++...+.-.+|..+.+.+..++.-.....-.....+.+.. -+.+.++.+...+..++...++.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~ 296 (463)
T KOG2816|consen 217 TPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLL 296 (463)
T ss_pred CCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111222222232234444444433322221111000101112211 2345566777777777778888887
Q ss_pred hh-hhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhc-cCCcccc
Q 016266 304 AG-RLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF-KHDTVTA 381 (392)
Q Consensus 304 ~G-~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~-p~~~~~a 381 (392)
.. .++..+|.|+ ++..|.....+...+. .+.++. |..+.....- .......+..-+..+... +++++.+
T Consensus 297 ~~~~l~~~l~~~~-~i~lGl~~~~~~~~~~--af~~~~-----w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v 367 (463)
T KOG2816|consen 297 LLPLLSSILGEKR-LISLGLLSEFLQLLLF--AFATET-----WMMFAAGVVV-ALAGIVFPAIRAFASILVSPEEQGKV 367 (463)
T ss_pred HHHHHHHHHhhhh-HhhHHHHHHHHHHHHH--HHhccc-----hhhhHHHHHH-HhhcchhHHHHhHHHhhcccccccch
Confidence 66 7788888877 5667888787775543 333332 4444444333 333555667777777766 4555656
Q ss_pred chh
Q 016266 382 NPT 384 (392)
Q Consensus 382 ~~~ 384 (392)
+++
T Consensus 368 ~~~ 370 (463)
T KOG2816|consen 368 FGI 370 (463)
T ss_pred hhH
Confidence 553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=89.72 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+.+.....++.+..|++.||+|||+.+.....+..+.... ...++...+....++.|++.+..++...++..+..
T Consensus 247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--- 323 (394)
T PRK03699 247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT--- 323 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 34444556788899999999999999988766554433222 23455555555678888888777776555554432
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI 208 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~ 208 (392)
++++++..|.......+|..+|+.+.+.+.+.. |++.. +++..++.+++.+
T Consensus 324 --------~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-----g~~~~-~~~~~~~~~~~~~ 374 (394)
T PRK03699 324 --------KVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-----GLQAA-LLTANGLYAVVFV 374 (394)
T ss_pred --------cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-----Cchhh-hhhhHHHHHHHHH
Confidence 345677788877778889999998887776542 45553 4444444444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-07 Score=91.83 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=77.8
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++.++.+++.||.++|+.+..+..+.++.... ...+++....+..++.|++.+...+...+++.+..
T Consensus 271 g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------- 341 (417)
T PRK10489 271 GAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQT--------- 341 (417)
T ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------
Confidence 34456778889999988888888877665554443 35667766667778888888776666566666654
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
|+++||+++|++.....+|..+|+.+.+.+.+.
T Consensus 342 -p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 342 -PDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM 374 (417)
T ss_pred -CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence 778899999999888899999999988877654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-07 Score=88.64 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=81.1
Q ss_pred HHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 67 ~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
.......+++++.|++.||+|+|+++..+.....+...... +.. ..+....+.|++.....+.....+.+..
T Consensus 243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~------ 314 (381)
T PRK03633 243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQA-AMAPALFILGAAGFTLYPVAMAWACEKV------ 314 (381)
T ss_pred HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhH-HHHHHHHHHHHHHHhHHHHHHHHHHccC------
Confidence 33344557788899999999999999888776655443322 222 2334567778877666676666555543
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHH
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL 205 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~ 205 (392)
|+++++.+.+.+....++|..+|+.+++.+.++. +++.. |.+.+.+.++
T Consensus 315 ----~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-----g~~~~-f~~~~~~~l~ 363 (381)
T PRK03633 315 ----EHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-----SDNLL-FIMIASVSFI 363 (381)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CccHH-HHHHHHHHHH
Confidence 6667777788777788899999999988877643 45543 4444444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=93.38 Aligned_cols=174 Identities=13% Similarity=0.022 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHhhh-ccCCCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHH-
Q 016266 30 VHILSCAFLLIFLAYGAAQNLETTV-NTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV- 103 (392)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~- 103 (392)
++.+.+..++.+..+.......+.+ .++.+.+. ...+.......++.++.|+++||+|||+.+..+..+..+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 4444555555444443333333322 22223222 22334444566888999999999999988766543332221
Q ss_pred -Hh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH-hhhhhhHhhhhh
Q 016266 104 -AA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAV 180 (392)
Q Consensus 104 -~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~-g~~~G~~i~~~~ 180 (392)
.. ...++...+.+.+++.|+.........+....+.. |+++||.+.|+......+ |..+++.+.+.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----------p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i 409 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV----------PKKAIGVANGIKGTFAYLFGDSFAKVGLGMI 409 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence 11 12345555556777777644332222223344443 888999999998766665 657777766665
Q ss_pred ccC-CC------CCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 181 LKD-DK------GGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 181 ~~~-~~------~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
... .+ ....+|+.. |.+..++.+++.+..++++
T Consensus 410 ~~~~~~g~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 410 ADPTKNGTPIFGYTLTGWAGT-FAALDIAAIGCICLMAIVA 449 (467)
T ss_pred hcccccccccccccccChHHH-HHHHHHHHHHHHHHHHHHH
Confidence 541 00 002457664 5555666666665555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-07 Score=89.09 Aligned_cols=176 Identities=14% Similarity=0.135 Sum_probs=120.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhcc-CCCchhHHHHH----HHHHHhhhhhhHHHHHHhhchh--HHHHHhhh
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISLGI----LYTSFTCFSLVASLVVRVLGSK--NALILGTT 97 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~g~~~~~~----~~~~~~v~~~~~g~l~dr~G~r--~~l~~g~~ 97 (392)
++.++....-+++++.-.+..++..+...+.. +.+.+...+.. ...+-.+++++.|++.||+|.| +++..+..
T Consensus 278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 56778888878888776666665555444433 23333322221 2223356788999999999999 88888887
Q ss_pred HHHHHHH-hhh--------chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH
Q 016266 98 GYWLFVA-ANL--------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS 168 (392)
Q Consensus 98 ~~~l~~~-~~~--------~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~ 168 (392)
++.+..+ +.+ .++.+.+.+..++.|+..|+..+.+-++.++.. |+++.+..+|++....-.
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li----------P~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI----------PPGREAEFFGLYAITGKA 427 (477)
T ss_pred HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHH
Confidence 7644322 223 345556777889999999999999999999987 888899999999998999
Q ss_pred hhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 169 g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
+..+||++-+.+.+..+ +-|.. +....++.+++.++...++.
T Consensus 428 ss~lGPll~g~i~~~tg----~~r~g-~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 428 SSWLGPLLFGLITDATG----SQRYG-FLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHHHHhC----CchhH-HHHHHHHHHHHHHHHhhccc
Confidence 99999998777766542 13443 33334444555555554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-07 Score=87.96 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=84.8
Q ss_pred HHHHHHhhhhhhHHHHHHhhchhHHHH-HhhhHHHHHHHh-h-----hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 67 ILYTSFTCFSLVASLVVRVLGSKNALI-LGTTGYWLFVAA-N-----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 67 ~~~~~~~v~~~~~g~l~dr~G~r~~l~-~g~~~~~l~~~~-~-----~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
.......++.+..|+++||+|||+.+. .+.+...+.... . ..++....++..++.|++.+...+. .....+.
T Consensus 265 ~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~ 343 (402)
T TIGR00897 265 TFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL 343 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 333455678899999999999998764 332222222111 1 1235555666788888888765433 3333332
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
+|++||+++|+......+|..+|+.+...+.+. .|++.. +++.+++.+++.++..++|
T Consensus 344 -----------~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-----~g~~~~-~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 344 -----------APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-----FGAIGV-VWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred -----------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHH-HHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999888777654 246553 5666666666666656655
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.2e-07 Score=86.24 Aligned_cols=108 Identities=7% Similarity=-0.059 Sum_probs=71.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh--hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~--~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
+.+.....++.++.+++.||+|||+.+..+..+..+..... ..++...+. -.+.|++.+...+.......+..
T Consensus 247 ~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~--- 321 (393)
T PRK09705 247 ALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHS--- 321 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhc---
Confidence 33334456778899999999999999888876554443322 222222222 24567777766665444333332
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
+|+++||+.+|+.......+..+|+.+.+.+....
T Consensus 322 ------~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 322 ------VQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24678999999988888888888998887776643
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-05 Score=73.94 Aligned_cols=292 Identities=16% Similarity=0.104 Sum_probs=164.2
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHhhhHHHHHH-HhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCC
Q 016266 72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFV-AANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~-~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 150 (392)
+.+..++...+.|..|.|++++++.+...+.. +..+.++...+-+.-+.-|++.+...+ -.+|+ .. . .
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~eva-y~sYi---ys------~-v 122 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVA-YYSYI---YS------V-V 122 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH-HHHHh---ee------e-c
Confidence 34456778899999999999999998765433 334667888778888999988876422 23333 21 1 2
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc----ccc----
Q 016266 151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GEK---- 222 (392)
Q Consensus 151 ~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~----~~~---- 222 (392)
|+++--++.+...++...|-.+|.+++-.+.... +.+.+.. ..+......++.++.+++|.+++. +..
T Consensus 123 ~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~---~~sy~~L-~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~ 198 (412)
T PF01770_consen 123 DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG---GVSYFQL-NYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQ 198 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHH-HHHHHHHHHHHHHHHHHcCCCCcccceeccCcccc
Confidence 5555567788777777788788877777665422 1223332 334444445666677777764321 000
Q ss_pred -----ccc------ccc-------chhhhh----HHHHHHHHHHhhccchhHHHHHH--HHhhhHHhh--hhhcccchhh
Q 016266 223 -----ETA------DAS-------VNFYSY----LVSLSKSITTLLADVRMLLIIPL--FAYSGLQQA--FVWAEFTKEI 276 (392)
Q Consensus 223 -----~~~------~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~--~~~~~~~~~~ 276 (392)
+.+ +.+ ...... ++...++..+..+||+++...+- +..+|..+. +.-..+. ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~-~v 277 (412)
T PF01770_consen 199 DANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWD-TV 277 (412)
T ss_pred ccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHH-hc
Confidence 000 000 000111 12223455566678877654432 223443321 1111111 11
Q ss_pred hccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHH--HHHHHHHHHHHhccccCCCccchHHHHHHHHH
Q 016266 277 VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA--IAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 354 (392)
Q Consensus 277 ~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~--~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l 354 (392)
..++-....-|.+-++..+.+.++++..|++..+.++-.-+ .++. .+.+.+ +++..+..+ .+..++..++
T Consensus 278 ~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l-~l~~~S~l~a~~--L~lm~~t~~-----Iwv~Y~~yIi 349 (412)
T PF01770_consen 278 PPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGEL-ALGVFSLLQAGL--LFLMSFTGN-----IWVCYAGYII 349 (412)
T ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHH-HHHHHHHHHHHH--HHHHHHhhH-----HHHHHHHHHH
Confidence 01111112346777777788888999999996655543222 2222 222322 223445554 5788999999
Q ss_pred HhhhhhhhhhHHHHHHHhhcc-CCccccchhhhh
Q 016266 355 LGIGDGVLNTQLSALLGILFK-HDTVTANPTLIR 387 (392)
Q Consensus 355 ~G~~~~~~~~~~~a~~~~~~p-~~~~~a~~~~~~ 387 (392)
++...-...|....-++.... ++-+-.++.+++
T Consensus 350 f~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 350 FRSLYMFLITIASFQIAKNLSEERYALVFGINTF 383 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhccccceeeeeeeHHH
Confidence 988888777777777776665 444777776553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-07 Score=89.75 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=72.1
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hh---chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~---~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
++.++.|++.||+|+|+++..+..+..+.... .. .++...+...-++.|++.+...+....+..+..
T Consensus 312 ~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------- 382 (471)
T PRK10504 312 GMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL--------- 382 (471)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 44577899999999999999888766554332 12 123333344557788888887777677666654
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
|+++||.++|+......+|..+|+.+.+.+..
T Consensus 383 -~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 383 -PDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred -CHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999998888999998887765543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-07 Score=88.25 Aligned_cols=129 Identities=11% Similarity=0.008 Sum_probs=80.7
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh---h-c-hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhc
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---L-F-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH 147 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~---~-~-~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~ 147 (392)
.++.++.|+++||+|||+++..+.++..+..... . . ++...++...++.|++.+..++....+++|..
T Consensus 300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~------- 372 (438)
T PRK09952 300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF------- 372 (438)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
Confidence 4566789999999999999887765443322211 1 2 23334444556667887777777777888876
Q ss_pred CCCccchhhhhHHHHHHH-HHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 148 KLHEGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 148 ~~~~~~~rg~~~g~~~~~-~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
|.+.|+...|+.+.. ..+|..++|.+...+.+... .+|+.. +....++.+++.+..+.+|+
T Consensus 373 ---p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---~~~~~~-~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 373 ---GASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---GSWHSV-AIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred ---CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---CCchHH-HHHHHHHHHHHHHHHHHccc
Confidence 778898888875433 34667777777666654221 136543 44445555566555555665
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-09 Score=107.75 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC-C----
Q 016266 111 WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-K---- 185 (392)
Q Consensus 111 ~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~-~---- 185 (392)
+..++.+.++.|+|.++.++...+|+.|+. ++|+-+...|++++...+|+.+|-++++..+..+ +
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv----------~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~ 210 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNV----------SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKV 210 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeecccc----------ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccc
Confidence 356778899999999999999999999986 6778899999999999999999988887665421 1
Q ss_pred --------CCCCCc---chhHHHHHHHHHHHHHHHHHhccCCcccc----c-cc-----ccc---ccchhh-------hh
Q 016266 186 --------GGSTSG---TTLLFIVFLGVITLGTILMCFLRKEEDKG----E-KE-----TAD---ASVNFY-------SY 234 (392)
Q Consensus 186 --------~~~~~w---r~~~f~i~~~~~~~~~~~~~~~~~~~~~~----~-~~-----~~~---~~~~~~-------~~ 234 (392)
+.+..| +|.-|++.+.+.++..+.++++|++.+.. + ++ ..+ .+..+. ..
T Consensus 211 ~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (539)
T PF03137_consen 211 PPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKS 290 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhh
Confidence 011112 23335555555554444445555432221 0 00 000 000000 11
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccccc--chhhHHHHH-HhHHHHHHHhhhhhhccCC
Q 016266 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAV-YGAFDAICSLAAGRLTTGL 311 (392)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~-~gi~~~~g~~~~G~lsd~~ 311 (392)
.++-.+..+++++||.+....+....-.....-+ ..|.|-|.+..++. +.++.+... .--+.++|.+++|.+.+|+
T Consensus 291 ~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~-~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~ 369 (539)
T PF03137_consen 291 IKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF-ATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF 369 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence 2222344557778887766554332211111111 23444444444554 344444322 2225678899999999997
Q ss_pred C
Q 016266 312 P 312 (392)
Q Consensus 312 g 312 (392)
.
T Consensus 370 k 370 (539)
T PF03137_consen 370 K 370 (539)
T ss_dssp -
T ss_pred c
Confidence 5
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-07 Score=89.71 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=85.4
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhh--HHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSW--YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~--~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
..+.++.+++.||+|||+++.++.++.++..+. ...++. ...+..-++.+++.+..++....+.+|..
T Consensus 369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------- 439 (505)
T TIGR00898 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY--------- 439 (505)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 456778899999999999999988776655443 233322 33344456666777777777677777765
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
|++.|+.++|+......+|.++|+.+.. +... ++.. .+.+++++.+++.+..++++|+
T Consensus 440 -p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~------~~~~-~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 440 -PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK------WLFL-PLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred -cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH------HHhh-HHHHHHHHHHHHHHHHHcCcCC
Confidence 7889999999998888899999988776 3221 1222 3555666666655555666654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.4e-07 Score=80.35 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=84.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHH----HHhhhhHHHHHHh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASI----IWVGEGTYLTAAA 140 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~----~~~~~~~~~~~~~ 140 (392)
.+..|...++..++.|.++||+|++..++.+..+..+..=+.+.-+...=+.+-.++|+..+. .||.... .
T Consensus 306 ~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~----~- 380 (459)
T KOG4686|consen 306 LSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVAS----L- 380 (459)
T ss_pred hhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhh----h-
Confidence 456667777888999999999999999988876544322221111222112344666666544 4444322 2
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
.|+++.|.++|+.++..++|..+-+++++.+..+. ++..|-..+|.+...+++..+.+.+.+.+
T Consensus 381 ---------vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~--g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 381 ---------VPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD--GSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred ---------CCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC--CchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 38889999999999999999999999988877643 23445554343333333333333344444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-06 Score=85.28 Aligned_cols=130 Identities=11% Similarity=0.048 Sum_probs=82.1
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----hh-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NL-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
...++.++.|+++||+|+|+.+.++.++..+.... .. .++...+...-+++.+..|...++..++..+..
T Consensus 271 ~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~----- 345 (491)
T PRK11010 271 ATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLC----- 345 (491)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 44577899999999999999887766544332221 12 234444443445544444444444455555554
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
+++.+++.+|+..+..++|..+++.+.+.+.+. .||+. .|.+..++.+.+.++...+|++
T Consensus 346 -----~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-----~G~~~-~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 346 -----NKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-----HGWPT-FYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 667788999988888888887776666666553 35765 4666666666666666556653
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-06 Score=83.32 Aligned_cols=103 Identities=6% Similarity=-0.004 Sum_probs=77.3
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...+..++.|++.||+|+|+++..+.++..+.... ...++++.+++..++.|++.+...+....++.+.
T Consensus 252 ~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~---------- 321 (382)
T PRK11128 252 AEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR---------- 321 (382)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
Confidence 33455678899999999999999888776665443 3567777778889999999988878777666553
Q ss_pred CccchhhhhHHHHH-HHHHHhhhhhhHhhhhhccCC
Q 016266 150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 150 ~~~~~rg~~~g~~~-~~~~~g~~~G~~i~~~~~~~~ 184 (392)
+++++++..+.+. .....|..+|+.+++.+.++.
T Consensus 322 -~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 322 -PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred -CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556788888775 445667788888888877643
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=85.43 Aligned_cols=177 Identities=12% Similarity=0.129 Sum_probs=119.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhcc-CCCchhHHHHHH----HHHHhhhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISLGIL----YTSFTCFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~g~~~~~~~----~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
+..+|++..-++.++.-.+.+++..+...+.. +.++++..+..+ ..+-..++++.|+|.||+|.|+++..+.+++
T Consensus 249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~ 328 (438)
T COG2270 249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL 328 (438)
T ss_pred hcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence 44558888777877776666555555544443 344443332221 1233467899999999999999999999887
Q ss_pred HHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhh
Q 016266 100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL 178 (392)
Q Consensus 100 ~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~ 178 (392)
.+.... .+...-..+.+...+.|...|+.++.+-+|.++.. |++|-++++|++....-.+..+|++.-+
T Consensus 329 ~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv----------p~~k~~~fFglyaltgra~S~~gp~lv~ 398 (438)
T COG2270 329 SIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV----------PKGKEGRFFGLYALTGRAASFLGPFLVA 398 (438)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC----------CCccccceeehhhhhhhHHHHHHHHHHH
Confidence 665443 33333334455789999999999999999999987 8888999999999888899999998776
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 179 AVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 179 ~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
.+.+..+ +-|.- +....++..++.+..+.++++
T Consensus 399 v~t~iTg----~~r~g-~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 399 VITQITG----SSRAG-VLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHhc----chhhH-HHHHHHHHHhhHhhEEeecCC
Confidence 6655332 12432 223333444555554555544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-07 Score=87.04 Aligned_cols=108 Identities=15% Similarity=-0.024 Sum_probs=75.6
Q ss_pred HHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHH---Hhhh--chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV---AANL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 67 ~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~---~~~~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
.......++.++.|++.||+|||+.+..+..+..+.. .... .++...++...++.|++.+..++....++.|..
T Consensus 263 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 341 (394)
T TIGR00883 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELF- 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhC-
Confidence 3334455677899999999999998876554433222 1111 245556666778889888888888778887775
Q ss_pred hhhhhcCCCccchhhhhHHHH-HHHHHHhhhhhhHhhhhhccCC
Q 016266 142 SHASNHKLHEGTVIGSFNGEF-WGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~-~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
|+++|++++|+. ..+...|..+|+.+.+.+.++.
T Consensus 342 ---------p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~ 376 (394)
T TIGR00883 342 ---------PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT 376 (394)
T ss_pred ---------CccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence 778999999974 4445677788888887776543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-06 Score=82.44 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=74.6
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHH--HH------HhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNA--LI------LGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~--l~------~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
......++.++.|++.||+|||+. .. .+..+.++.... ...++....+..-.+.+.+.+ ..+...+++.+
T Consensus 260 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 338 (399)
T TIGR00893 260 PGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISD 338 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHh
Confidence 333445678899999999999961 11 111111111111 112333443333344444444 56666777777
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCC-cchhHHHHHHHHHHHHHHH
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTS-GTTLLFIVFLGVITLGTIL 209 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~-wr~~~f~i~~~~~~~~~~~ 209 (392)
.. |+++||+++|+......+|..+|+.+.+.+.+.. + |+.. +.+.+++.+++.+.
T Consensus 339 ~~----------~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-----g~~~~~-~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 339 NA----------PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-----GSFAGA-LMVVAALALIGALS 394 (399)
T ss_pred hc----------ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----CchhHH-HHHHHHHHHHHHHH
Confidence 65 7889999999999989999999998887776532 3 5543 44444444444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.5e-07 Score=86.09 Aligned_cols=104 Identities=13% Similarity=-0.000 Sum_probs=73.7
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+.......++.++.|++.||+|||+.+.............. ..++....+...++.|++.+...+...+++.+..
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 367 (398)
T TIGR00895 292 ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY---- 367 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 33334456778899999999999955443332222222222 2345555666778999999888888777777765
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
|+++||+++|+......+|..+|+.+.+.
T Consensus 368 ------~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 368 ------PTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 78899999999988888888888887654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-07 Score=89.41 Aligned_cols=122 Identities=9% Similarity=-0.011 Sum_probs=82.1
Q ss_pred HHhhhhhhHHHHHHh--hchhHHHHHhh--hHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 71 SFTCFSLVASLVVRV--LGSKNALILGT--TGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr--~G~r~~l~~g~--~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
...+++++.|.+.|| +++|+...++. +..++.... ...++++.+++.+++.|++.+..++...+.+.+..
T Consensus 288 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~----- 362 (455)
T TIGR00892 288 VDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV----- 362 (455)
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh-----
Confidence 334566778999997 44454443332 222222222 34567777788899999999888888777777765
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT 207 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~ 207 (392)
|++++|+.+|++.+..++|.++|+.+.+.+....+ +|+.. |.+.+++.+++.
T Consensus 363 -----~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g----~~~~~-f~~~~~~~li~~ 414 (455)
T TIGR00892 363 -----GAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK----NYKYI-FYASGSIVVSAG 414 (455)
T ss_pred -----hHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC----CcchH-HHHhhHHHHHHH
Confidence 77899999999999999999999988877665321 36553 444444444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.6e-07 Score=87.06 Aligned_cols=110 Identities=10% Similarity=-0.113 Sum_probs=78.6
Q ss_pred HHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhc
Q 016266 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH 147 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~ 147 (392)
....++.++.+++.||+|+|+++..+..+..+..... + .++...+++..++.|++.+...+...+++++..+.. .
T Consensus 268 i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~ 344 (437)
T TIGR00792 268 VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYG---E 344 (437)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---h
Confidence 3445667889999999999999998887665544332 2 235555566778889998888877777777765311 0
Q ss_pred CCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 148 ~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
...+++++|.++|+......+|..+|+.+.+.+..
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01134567999999998899999999888776654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-07 Score=87.49 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=78.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh----h--ch------hhHHHHHHHHHHhhhHHHHH-hhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----L--FP------SWYTMVPASLYLGFAASIIW-VGE 132 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~----~--~~------~~~~l~~~r~l~Gig~g~~~-~~~ 132 (392)
........++.++.|++.||+|||+.+..+..+..+..... . .+ ++..+... .+.+.+.+..+ +..
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 404 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI-LLFIAFFAMGWGPVP 404 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHH-HHHHHHHHccccCee
Confidence 33444456778899999999999999988876554433221 1 11 22222222 22222222222 333
Q ss_pred hHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
..+..+.. |+++||+++|+......+|..+++.+...+..+ .+|+.. |.+.+++.+++.+..++
T Consensus 405 ~~~~~~~~----------p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-----~~~~~~-f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 405 WVIVSEIF----------PLSLRPKGISIAVAANWLANFIVGFLFPTMLES-----IGVGGV-FIFFGGLNVLGLIFVYF 468 (481)
T ss_pred hhhhhccC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccce-ehhHHHHHHHHHHHHhe
Confidence 44445554 788999999999998999999988877666543 245543 55555555555554433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-06 Score=74.58 Aligned_cols=285 Identities=14% Similarity=0.086 Sum_probs=148.4
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhhhchhhHHHHHHHHHHhhhHHHHHhh-hhHHHHHHhhhhhhhcCCCcc
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVG-EGTYLTAAALSHASNHKLHEG 152 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 152 (392)
....+.|.++||-|||+..+.-++.|.++.+.-.+|.|..+++.|++-|++.+..+.+ ..=+++|+-
T Consensus 87 LFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn------------ 154 (454)
T KOG4332|consen 87 LFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN------------ 154 (454)
T ss_pred HHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh------------
Confidence 3456788999999999998887777777666667889999999999999999998876 344555543
Q ss_pred chhhhhHHHHHHHH--------HHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCcc-ccccc
Q 016266 153 TVIGSFNGEFWGMF--------ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED-KGEKE 223 (392)
Q Consensus 153 ~~rg~~~g~~~~~~--------~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 223 (392)
++||.---+...-+ .+=.++.++.+-.+..... .|--. .|-..+.+ +++-.++.++.-.+ ..++.
T Consensus 155 ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s---lGPVA-PFdAAacf--LaigmAvil~~W~ENygdps 228 (454)
T KOG4332|consen 155 EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS---LGPVA-PFDAAACF--LAIGMAVILSSWSENYGDPS 228 (454)
T ss_pred hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc---cCCCC-chHHHHHH--HHHHHHHHHhhhhhccCChh
Confidence 23332221211111 1112223333333322211 22212 13222222 22222333443211 11111
Q ss_pred cccccchhhhhHHHHHHHHHHh-hccchhHHHHHHH-HhhhHHhhhhhcccchhhhccccccchhhHHHHHHhHHHHHHH
Q 016266 224 TADASVNFYSYLVSLSKSITTL-LADVRMLLIIPLF-AYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~ 301 (392)
+++++..+++...+. ..|.|..++.-+- ++=+....|. -.++|.+--++-+ ---|++.+-+-++.++|+
T Consensus 229 -------~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFV-FLWTPaLspn~e~-iPhGfiFatFMlASmLGS 299 (454)
T KOG4332|consen 229 -------ENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFV-FLWTPALSPNDEE-IPHGFIFATFMLASMLGS 299 (454)
T ss_pred -------hhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheee-eeecccCCCCccc-CCchhHHHHHHHHHHHhh
Confidence 123334444443333 4567766554221 1222222221 1122332100000 124777888888899999
Q ss_pred hhhhhhccCCCCc-hhhHHHHHHHHHHHHHHHHhcc--ccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccC-C
Q 016266 302 LAAGRLTTGLPSI-TFIVSGGAIAQVVVFLWILINY--SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-D 377 (392)
Q Consensus 302 ~~~G~lsd~~g~r-~~~~~~g~~~~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~-~ 377 (392)
-+..|+..|-..| .....+.+....+.+.+..+.. .|+. .++..-++..+++-.+-|.++|.+.-+=.+..|+ .
T Consensus 300 Sla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~k--es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea 377 (454)
T KOG4332|consen 300 SLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSK--ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA 377 (454)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCc--CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH
Confidence 9988886653322 2233333333333322211122 2322 2234557777788888999999999999999985 4
Q ss_pred ccccchhhhh
Q 016266 378 TVTANPTLIR 387 (392)
Q Consensus 378 ~~~a~~~~~~ 387 (392)
+++.+.+++.
T Consensus 378 rstimNfFRv 387 (454)
T KOG4332|consen 378 RSTIMNFFRV 387 (454)
T ss_pred Hhhhhhheec
Confidence 4666666543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-06 Score=82.79 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=79.9
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
...++.++.+++.||+|||+.+..+..+.++.... ...+ +.+.+++..++.|++.+...+...+++.+..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------- 330 (365)
T TIGR00900 259 GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRV-------- 330 (365)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 44566788899999999999998876655544333 2334 3666777889999999988888777777775
Q ss_pred CCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 149 ~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
|+++||++.|+......++..+|+.+.+.+.+
T Consensus 331 --~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 331 --PAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999988776654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-06 Score=81.12 Aligned_cols=130 Identities=15% Similarity=0.245 Sum_probs=89.3
Q ss_pred hhhHHHHHHhhchhHHHHHhhhHHHH-HHHh-hhchhhHH----HHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 76 SLVASLVVRVLGSKNALILGTTGYWL-FVAA-NLFPSWYT----MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 76 ~~~~g~l~dr~G~r~~l~~g~~~~~l-~~~~-~~~~~~~~----l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
-++.+++.+|+|.|+++.++.+.+.+ +..- ...++.+. .+...+++|+.-+..+++...|+.+..
T Consensus 260 f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~--------- 330 (400)
T PF03825_consen 260 FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA--------- 330 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC---------
Confidence 35689999999999999999988876 3332 23244332 233356799999999999999998887
Q ss_pred CccchhhhhHHHHHHH-HHHhhhhhhHhhhhhccCCCC-CCCCcchhHHHHHHHHHHHHHHHH-HhccCC
Q 016266 150 HEGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDKG-GSTSGTTLLFIVFLGVITLGTILM-CFLRKE 216 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~-~~~g~~~G~~i~~~~~~~~~~-~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~ 216 (392)
|++.|+++-|++.+. ..+|..+|+.+++.+.++.+. +.+.|.. ++.+.+++.++..++. +++||+
T Consensus 331 -p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~-~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 331 -PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA-VFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred -CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHHHHHHHHHHHhhccCC
Confidence 889999999988654 578999999999888775432 1223332 3444444444443333 445554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.5e-06 Score=80.12 Aligned_cols=127 Identities=10% Similarity=0.067 Sum_probs=85.6
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHH-HHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCcc
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLF-VAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG 152 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~-~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (392)
..-.+++++.+|+|.|+.++++..+.++= ..+.+.++.+.+.+.+.+.|+..+....+...|+++.. |+
T Consensus 274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f----------d~ 343 (412)
T PF01306_consen 274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHF----------DK 343 (412)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------G
T ss_pred HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CH
Confidence 34467899999999999999999888774 34467899999999999999999999999999999987 44
Q ss_pred chhhhhHHHH-HHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCC
Q 016266 153 TVIGSFNGEF-WGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKE 216 (392)
Q Consensus 153 ~~rg~~~g~~-~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~ 216 (392)
|..++...+. ..+.+.|..+.+.+++.+.++. |.+.+ |++.+.+.+...++. +.++++
T Consensus 344 rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-----G~~~t-ylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 344 RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-----GFQHT-YLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHS--S
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-----CcHHH-HHHHHHHHHHHHHHheeeecCC
Confidence 5555555542 3445666666666666655432 34444 656665555444444 445543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-05 Score=79.68 Aligned_cols=295 Identities=15% Similarity=0.097 Sum_probs=155.9
Q ss_pred hhhhhHHHHHHhhc----hhHH-HHHhhhHHHHHHHh-hh----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 74 CFSLVASLVVRVLG----SKNA-LILGTTGYWLFVAA-NL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 74 v~~~~~g~l~dr~G----~r~~-l~~g~~~~~l~~~~-~~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
...++.|.++|-+- |||. ++++.++..++... .. ..+.....+.-.+..+|.+...+..-+...|..++
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~- 117 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARR- 117 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-
Confidence 45689999999983 4444 55565544332221 11 23444444455777788888888888888888876
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccc-c
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGE-K 222 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~ 222 (392)
+|++||...+..+.....|.++|..+++.+.+.. +.+.. |.+...+..+..+..+++.++.++.+ .
T Consensus 118 -------~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-----~~~~~-f~i~~~~~~l~~~~~~~~~~e~~~~~~~ 184 (433)
T PF03092_consen 118 -------EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-----GPQGV-FLISAALPLLMLIVALFLLEERKVRPAD 184 (433)
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-----CCeEE-ehHHHHHHHHHHHHHHHhhhhccccccc
Confidence 4455999999989889999999988887766543 23332 44555444444444444443211111 1
Q ss_pred cc---cccc-chhhhhHHHHHHHHHHhhccchhHHHHH-HHHhhhHHhhhhhc-ccchhhhccc-----cccchhhHHHH
Q 016266 223 ET---ADAS-VNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWA-EFTKEIVTPA-----LGVSGVGGAMA 291 (392)
Q Consensus 223 ~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~~~~~-~~~~~~~~~~-----~g~s~~~~~~~ 291 (392)
+. .+.+ .......++..++.++.++.+..+.... ..++.........+ .+ .+.++. ++.+..+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~f--y~~~~~~~gp~fs~~f~~~~~~ 262 (433)
T PF03092_consen 185 EVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSF--YFQTDALGGPHFSPSFYGTLSI 262 (433)
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEE--EEEeccccccccCHHHHHHHHH
Confidence 10 0000 0111125666777788888877765433 22222221111101 11 011111 22234566667
Q ss_pred HHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcccc-CCCc-c-chHHHHHHHHHHhhhhhhhhhHHHH
Q 016266 292 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV-TSGV-L-GTLYPLIMAALLGIGDGVLNTQLSA 368 (392)
Q Consensus 292 ~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~-~~~~-~-~~~~~~i~~~l~G~~~~~~~~~~~a 368 (392)
+..++.++|..+..+...+..-|+.+ ....++..+..+.-+..... |.+. + +.+..+.-.++..+......-+...
T Consensus 263 vg~~~~l~g~~~y~~~~~~~~~R~~~-~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lv 341 (433)
T PF03092_consen 263 VGSIASLLGILLYRKYFSNWSWRRIF-VVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLV 341 (433)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHH
Confidence 77777888888776665555666643 33333333221110001110 1000 0 0122233445566666666666778
Q ss_pred HHHhhccCCccc-cchhh
Q 016266 369 LLGILFKHDTVT-ANPTL 385 (392)
Q Consensus 369 ~~~~~~p~~~~~-a~~~~ 385 (392)
+.+++.|+..|. .++++
T Consensus 342 l~a~lcP~G~Egt~yall 359 (433)
T PF03092_consen 342 LAARLCPKGSEGTVYALL 359 (433)
T ss_pred HHHHHCCCCchHHHHHHH
Confidence 889999876644 55544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=86.25 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC-C-----
Q 016266 113 TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-G----- 186 (392)
Q Consensus 113 ~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~-~----- 186 (392)
.++.+.++.|+|..+.++...+|+.|.. .+|+-...+|+.+.+..+|+++|-+++++.++.+. .
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnv----------k~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNV----------KKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccc----------cccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence 5667899999999999999999999986 45678899999999999999999999887765321 1
Q ss_pred ----CCCCc---chhHHHHHHHHHHHHHHHHHhccCCcccccc-----c----ccccc-chhh----hhHHHHHHHHHHh
Q 016266 187 ----GSTSG---TTLLFIVFLGVITLGTILMCFLRKEEDKGEK-----E----TADAS-VNFY----SYLVSLSKSITTL 245 (392)
Q Consensus 187 ----~~~~w---r~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~-~~~~----~~~~~~~~~~~~~ 245 (392)
....| +|.-|.+.+.+.++..+.++++++..+...+ + +++.+ .++. ++.++-.+..++.
T Consensus 309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~l 388 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRL 388 (735)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHH
Confidence 11122 2333555555555555555667654332110 0 00100 0111 1233444556788
Q ss_pred hccchhHHHHHHHHhhhHH-hhhhhcccchhhhccccccc--hhhHHHHHHh-HHHHHHHhhhhhhccCCC
Q 016266 246 LADVRMLLIIPLFAYSGLQ-QAFVWAEFTKEIVTPALGVS--GVGGAMAVYG-AFDAICSLAAGRLTTGLP 312 (392)
Q Consensus 246 ~~~~~~~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~g~s--~~~~~~~~~g-i~~~~g~~~~G~lsd~~g 312 (392)
++||-+....+...+--.. .++ ..|.|-|....+|.+ .+..++...+ -+..+|-+++|++.+|+.
T Consensus 389 l~N~if~~~~l~~~~~~~~~~G~--~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 389 LSNPIFMLVVLASVIESLAITGY--ITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred hcCchHHHHHHHHHHHHHHHhhH--HHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 8998776554432211111 112 234455554445654 4554443322 245677788999999874
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-06 Score=80.46 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=82.1
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++.++.|++.||+|+|+.+.++..++++.... ...++.+.++..++++|++.+........+..+..
T Consensus 266 ~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------- 336 (396)
T TIGR00882 266 LNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF--------- 336 (396)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 34456688899999999999999988877765544 35677777788899999987665444444444332
Q ss_pred CccchhhhhHHH-HHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 016266 150 HEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL 209 (392)
Q Consensus 150 ~~~~~rg~~~g~-~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~ 209 (392)
+++.++...+. +..+..+|..+|+++.+.+.+.. |++.. |.+.+++..+..++
T Consensus 337 -~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-----G~~~~-f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 337 -DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-----GFQGA-YLVLGCIVLLFTLI 390 (396)
T ss_pred -CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-----ccHHH-HHHHHHHHHHHHHH
Confidence 44455554444 45667888889988887776532 56553 55555555554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=83.92 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=65.3
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh--hc----------hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LF----------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~--~~----------~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
.++.+++|++.||+|||+.+..+.++..+..... .. ++.+.++...++.+++.+..++...+++.+.+
T Consensus 259 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 338 (356)
T TIGR00901 259 ILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS 338 (356)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3567889999999999999888887665443321 11 34456667788999999999999999999887
Q ss_pred hhhhhhcCCCccchhhhhHHHHHHHH
Q 016266 141 LSHASNHKLHEGTVIGSFNGEFWGMF 166 (392)
Q Consensus 141 ~~~~~~~~~~~~~~rg~~~g~~~~~~ 166 (392)
|+|+||+.+|++.+..
T Consensus 339 ----------p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 339 ----------NPKFGATQMALLSSLS 354 (356)
T ss_pred ----------CCCccHHHHHHHHHHH
Confidence 8999999999876543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=88.37 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=72.9
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hh-c---hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL-F---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~-~---~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
++.+++++++||+|||+.++++..+.++.... .. . ++...+...-....++.....+....+.+|..
T Consensus 350 ~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~-------- 421 (502)
T TIGR00887 350 PGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF-------- 421 (502)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC--------
Confidence 35677899999999999998887665443321 11 1 11111111111111111111222334455554
Q ss_pred CCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC--C---CCCcchhHHHHHHHHHHHHHHHHHhccCC
Q 016266 149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--G---STSGTTLLFIVFLGVITLGTILMCFLRKE 216 (392)
Q Consensus 149 ~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~--~---~~~wr~~~f~i~~~~~~~~~~~~~~~~~~ 216 (392)
|.+.|+++.|+......++..+++.+...+...... + ..+... .+.+++++.+++.+..++++|+
T Consensus 422 --p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~i~~~~lpEt 491 (502)
T TIGR00887 422 --PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH-VLEIFALFMFLGILFTLLIPET 491 (502)
T ss_pred --chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH-HHHHHHHHHHHHHHHheEeccC
Confidence 888999999999888888888888776655442110 0 122222 3566666666655544555553
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=84.49 Aligned_cols=107 Identities=13% Similarity=-0.051 Sum_probs=76.0
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hc--hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
.++.++.+++.||+|+|+++.++.++..+..... +. ++++.++...++.|+|.+...+...+..++..+.... +
T Consensus 278 ~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~---~ 354 (448)
T PRK09848 278 VASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY---L 354 (448)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---h
Confidence 4567889999999999999999987665543332 22 3455556667889999999888877777776531100 0
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
...+++|..+|.+.....+|+.+|+.+...+..
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122356999999988888999999887766543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.7e-06 Score=81.32 Aligned_cols=128 Identities=14% Similarity=-0.032 Sum_probs=67.1
Q ss_pred HhhhhhhHHHHHHhh--chhHHH-HHhhhHHHHHHHhh-h--chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 72 FTCFSLVASLVVRVL--GSKNAL-ILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~--G~r~~l-~~g~~~~~l~~~~~-~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
..++.++.|+++||+ |||+.. .....+..+..... . ..+....+..-.+.|.+..........+..+..
T Consensus 302 ~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----- 376 (452)
T PRK11273 302 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELA----- 376 (452)
T ss_pred HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc-----
Confidence 345678899999999 555432 22222222222211 1 223333333334444433222222223333443
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhh-hhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQF-VGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~-~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
|+++||+++|+.......|.. +|+.+.+.+..+ .||+.. |.+..+..+++++....+..
T Consensus 377 -----p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 377 -----PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-----FGWDGG-FMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred -----ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-----hcchHH-HHHHHHHHHHHHHHHHHHhc
Confidence 788999999998776666654 467776666543 346553 55555555666555544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-06 Score=83.88 Aligned_cols=106 Identities=8% Similarity=-0.073 Sum_probs=69.4
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h-h-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N-L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~-~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
......+++++.|++.||+|||+++..+..+..+.... . . .+++..+....++.+.......+....++.+..
T Consensus 320 ~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 395 (496)
T PRK03893 320 SGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF---- 395 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC----
Confidence 33344567889999999999999988877654443322 1 1 233333333344443332222334445555554
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
|+++||+.+|++.....+|..+|+.+.+.+.++
T Consensus 396 ------~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 396 ------DTEQRAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred ------CHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 778999999999888899999999988877654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-06 Score=82.39 Aligned_cols=115 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhc--hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
..+......++.++.++++||+|+|+++..+..++.+..+. .+. ++.+.+++.-++.|++.+..++.....++|..+
T Consensus 266 ~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id 345 (428)
T PF13347_consen 266 MLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVID 345 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchh
Confidence 33444455567788999999999999999999988776654 333 488888888999999999999988888888875
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.....+ .+++.|..+|........++.+++.+...+..
T Consensus 346 ~~e~~t---g~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 346 YDEWKT---GRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hHHHhc---CCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 432221 13446888888888888888888877665554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.4e-06 Score=80.93 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=48.2
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--h-h--chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~-~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
...+++++.|+++||+|||+++.++..+..+.... . . .++....+..-.+.+...+........+.+|..
T Consensus 291 ~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f----- 365 (432)
T PRK10406 291 VFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMF----- 365 (432)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 44566788899999999999887765543222211 1 1 122222221112222223333333445666765
Q ss_pred hcCCCccchhhhhHHHHHHH
Q 016266 146 NHKLHEGTVIGSFNGEFWGM 165 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~ 165 (392)
|+|.||.++|+.+..
T Consensus 366 -----p~~~r~t~~g~~~~~ 380 (432)
T PRK10406 366 -----PAQVRALGVGLSYAV 380 (432)
T ss_pred -----CCCccchhhhHHHHH
Confidence 888999999987643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=78.08 Aligned_cols=101 Identities=8% Similarity=-0.038 Sum_probs=71.8
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h-----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~-----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
...++.++.+++.||+|+|+.+.++.++..+..... . .+++..++..-++.|+|.+...+.........
T Consensus 263 ~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~----- 337 (406)
T PRK15402 263 ALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS----- 337 (406)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-----
Confidence 445677889999999999999988876554433321 1 23455556677889999888766544433221
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
++++||+..+........|+.+|+.+...+..
T Consensus 338 ------~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 338 ------SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred ------ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45799999999988888888888888776644
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=79.61 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=69.5
Q ss_pred HHHHHHHhhhhhhHHHHHHhh--chhHHH-HHhhhHHHHHH---HhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 66 GILYTSFTCFSLVASLVVRVL--GSKNAL-ILGTTGYWLFV---AANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~--G~r~~l-~~g~~~~~l~~---~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
+.+.....++.++.|++.||+ ++|+.. ........+.. ......+........+..|++..........+..+.
T Consensus 286 ~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 365 (434)
T PRK11663 286 SMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAEC 365 (434)
T ss_pred HHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 344445567889999999999 333332 22111111111 111112333333333334433221111122333343
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
. |+++||+.+|+......+|..+|+.+.+.+.++ .||+.. |...+++.+++.+..
T Consensus 366 ~----------~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-----~g~~~~-f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 366 S----------HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-----WHWTGF-FVVISIAAGISALLL 420 (434)
T ss_pred c----------cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-----cccHHH-HHHHHHHHHHHHHHH
Confidence 3 678999999999999999999999887776653 357654 555555555544433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=78.29 Aligned_cols=118 Identities=15% Similarity=-0.017 Sum_probs=75.1
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h------hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N------LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~------~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
++.++.|++.||+|+|+.+..+..+....... . ..++...++..-++.+++.+...+...++..+..
T Consensus 259 ~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 332 (390)
T TIGR02718 259 LGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFA------ 332 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 45678899999999999998876554221111 1 1223333344445556666666666555555543
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHH
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG 206 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~ 206 (392)
.+++++|+.++...+..++|..+|+.+++.+.++. |++. .|....++.+++
T Consensus 333 ---~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-----G~~~-~f~~~~~~~l~a 383 (390)
T TIGR02718 333 ---GDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-----GYAG-GFLSGTVLAVLA 383 (390)
T ss_pred ---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccHH-HHHHHHHHHHHH
Confidence 13478999999999999999999999988776543 4444 244444443443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=82.86 Aligned_cols=106 Identities=9% Similarity=-0.050 Sum_probs=76.0
Q ss_pred HHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 69 ~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
.....++.++.|++.||+|||+.+.++.....+.... ...++...+.....+.|+..+..++....++.+..
T Consensus 284 ~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 357 (405)
T TIGR00891 284 NIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYF------ 357 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhC------
Confidence 3344577889999999999999998887654332221 23345555555556667666666666566666665
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
|+++||+++|+.......|..+|+.+.+.+.++.
T Consensus 358 ----~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 391 (405)
T TIGR00891 358 ----PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL 391 (405)
T ss_pred ----CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999998888999999999888776643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.9e-06 Score=82.55 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=76.0
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh---h--chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~---~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
......++.+++|++.||+|||+.+..+..+..+..... . ..++..++..-++.|+|.+...+.......+.
T Consensus 300 ~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~--- 376 (485)
T TIGR00711 300 VGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSG--- 376 (485)
T ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 333455678899999999999999988877665544321 1 23445555567889999988776654444333
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.|+++||.+.|+......+|..+|+.+...+..
T Consensus 377 -------~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 377 -------LPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred -------CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 277899999999998889999998887766543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=80.71 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=77.2
Q ss_pred HHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh--h-chh-h-HHHHHHHHHHhhhHHHHH-hhhhHHHHHHhhhh
Q 016266 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L-FPS-W-YTMVPASLYLGFAASIIW-VGEGTYLTAAALSH 143 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~--~-~~~-~-~~l~~~r~l~Gig~g~~~-~~~~~~~~~~~~~~ 143 (392)
....++.++.++++||+|||+.++.+.++..+..... . .++ . ......-++.+.+.+..+ +....+++|..
T Consensus 317 ~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--- 393 (479)
T PRK10077 317 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF--- 393 (479)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhC---
Confidence 3445778899999999999999999888766543321 1 111 1 122223333444443333 34456666665
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc-CCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~-~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
|+++||+++|+......+|..+|+.+...+.. .......+|+.. |.+++++.+++.++.+
T Consensus 394 -------p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 394 -------PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFS-YWIYGCMGVLAALFMW 454 (479)
T ss_pred -------ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccH-HHHHHHHHHHHHHHHH
Confidence 78899999999888888888887655443321 000112456543 5555555555444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.3e-06 Score=79.43 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=70.6
Q ss_pred hHHHHH-HhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchh
Q 016266 78 VASLVV-RVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI 155 (392)
Q Consensus 78 ~~g~l~-dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 155 (392)
..+++. ||++.|+.+..+..+.++.... ...+++..++...++.|++.+...+...+++.+.. |+++|
T Consensus 262 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~----------p~~~~ 331 (400)
T PRK11646 262 PIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLA----------DARAR 331 (400)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcC----------Ccccc
Confidence 344544 5577677777766655554433 24566666666778888888877777667666665 78999
Q ss_pred hhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 156 GSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 156 g~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
|+.+|+......+|..+|+.+++.+.++.
T Consensus 332 g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 332 GSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred hhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999988887653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=80.24 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=85.6
Q ss_pred CCchhHHHHHHHHHHhhhhh----hHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhh
Q 016266 58 GNLGTISLGILYTSFTCFSL----VASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGE 132 (392)
Q Consensus 58 ~~~g~~~~~~~~~~~~v~~~----~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~ 132 (392)
.+.+....+++.++++++.+ +.+++.+|+++++.+..+.+++++..+. .+.++.+..++.-++.|++.....+..
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~ 328 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSL 328 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666554 4556778888888888888777766554 467787777777788888887766665
Q ss_pred hHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
.+.+-+. .|++.|||.++++.+....+..+|.++.+.+.++.
T Consensus 329 ~t~~Q~~----------~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~ 370 (524)
T PF05977_consen 329 NTLVQLS----------VPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF 370 (524)
T ss_pred HHHHHHh----------CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554444 38899999999999999988999999888877653
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=76.38 Aligned_cols=110 Identities=9% Similarity=0.015 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHhh-chhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~-G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
.+.......+++++.|++.||+ +||+.+..+..+..++... ...++..... .-++.|++.+...+...+.+.+..
T Consensus 238 ~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~-- 314 (355)
T TIGR00896 238 LALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRS-- 314 (355)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhc--
Confidence 3444455667889999999999 5666666666555544332 2222222222 347789999888876555544332
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
.+++++|..+|+......++..+|+.+.+.+.++.
T Consensus 315 -------~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 315 -------RQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred -------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14567789899887777788888988887776654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=75.34 Aligned_cols=149 Identities=15% Similarity=0.027 Sum_probs=95.5
Q ss_pred hHHHhHhhhccCCCchhHHHHHHHHHHh----hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h-hchhhHHHHHHHH
Q 016266 46 AAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N-LFPSWYTMVPASL 119 (392)
Q Consensus 46 ~~~~l~~~l~~~~~~g~~~~~~~~~~~~----v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~-~~~~~~~l~~~r~ 119 (392)
....+.+.+.+..+.+....+.....|+ +++.+.|++.|| +.|+++.....+..+.... . ..++....++.-+
T Consensus 230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~ 308 (394)
T COG2814 230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLF 308 (394)
T ss_pred hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555555555545555555554 567889999999 9999998887666554433 2 3444444444545
Q ss_pred HHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHH
Q 016266 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVF 199 (392)
Q Consensus 120 l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~ 199 (392)
+.|++.++ ....+..+.++ ..|+.++.+.++..+.+++|..+|..+++.+.++. |+..+ .++.
T Consensus 309 ~wg~a~~~---~~~~~~~~~a~--------~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-----g~~~~-~~~~ 371 (394)
T COG2814 309 LWGFAFSP---ALQGLQTRLAR--------LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-----GYAAT-GWVG 371 (394)
T ss_pred HHHHHhhh---hhhHHHHHhcc--------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHH-HHHH
Confidence 56665554 34455555553 14678999999999999999999999999888753 45443 4444
Q ss_pred HHHHHHHHHHHHh
Q 016266 200 LGVITLGTILMCF 212 (392)
Q Consensus 200 ~~~~~~~~~~~~~ 212 (392)
+++.+++.++.+.
T Consensus 372 a~l~~~a~~~~~~ 384 (394)
T COG2814 372 AALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-05 Score=75.26 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=74.3
Q ss_pred hhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCcc
Q 016266 75 FSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG 152 (392)
Q Consensus 75 ~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (392)
.+++.|.+.||+++|+.+..+..+..+..... . .++.+.+++..++.|+|.+...+....++.+.. |+
T Consensus 260 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~----------p~ 329 (395)
T PRK10054 260 LQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA----------PP 329 (395)
T ss_pred ehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------Cc
Confidence 45677899999999999988877666554432 2 356666667889999999887777777776665 77
Q ss_pred chhhhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 153 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 153 ~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
+.||++++... ....|..+|+.+++.+.++.
T Consensus 330 ~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 330 GMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred ccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 88999888653 44578889998888887654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=76.85 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=64.1
Q ss_pred HHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh--hchhhHHHHHHHHHHhhhH--HHHHhhhhHHHHHHhhhhhh
Q 016266 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LFPSWYTMVPASLYLGFAA--SIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~--~~~~~~~l~~~r~l~Gig~--g~~~~~~~~~~~~~~~~~~~ 145 (392)
....+++++.|++.||+|||+.+..+.++..+..... ..++....+ .-++.|++. ....+....++.+..
T Consensus 277 ~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 350 (426)
T PRK12307 277 FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL-GACLFGLMATNVGVGGLVPKFLYDYF----- 350 (426)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHH-HHHHHHHHHhcccHhHHHHHHHHHhC-----
Confidence 3445677889999999999999888876544433221 111211111 223333322 111222334444443
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
|+++||+++|+......+|..+|+.+.+.+..+
T Consensus 351 -----p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 351 -----PLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred -----cHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 888999999998888888999999888777654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-05 Score=75.79 Aligned_cols=102 Identities=15% Similarity=0.014 Sum_probs=61.5
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH---hh--hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVA---AN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~---~~--~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
..++.++.|+++||+|||+++..+..+..+... .. ..+++..+....++.|++.+...+....+..|..
T Consensus 287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~------ 360 (434)
T PRK15075 287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVM------ 360 (434)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHC------
Confidence 346678899999999999998776543222111 11 1233333333345556666665555556666665
Q ss_pred cCCCccchhhhhHHHHHHHHH-HhhhhhhHhhhhhccC
Q 016266 147 HKLHEGTVIGSFNGEFWGMFA-SHQFVGNLITLAVLKD 183 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~-~g~~~G~~i~~~~~~~ 183 (392)
|+++||..+|+...... .+..+++.+...+.++
T Consensus 361 ----p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 361 ----PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred ----CCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 88899999997543332 3345566666655554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-05 Score=74.98 Aligned_cols=105 Identities=10% Similarity=-0.072 Sum_probs=63.8
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
......++.++.|++.||+|+|+.+..+..+..+..+. ...++....+...++.+++.....+.......+..
T Consensus 244 ~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----- 318 (382)
T PRK10091 244 VGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNA----- 318 (382)
T ss_pred HHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-----
Confidence 33344577889999999999999998887665554332 22344444444555666665544443222222221
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
++++.++...+ .....+|..+|+.+++.+.+.
T Consensus 319 ----~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 319 ----KGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred ----CcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHc
Confidence 24455555433 456788999999988877654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=81.09 Aligned_cols=133 Identities=11% Similarity=-0.060 Sum_probs=66.9
Q ss_pred HHHHHHhhhhhhHHHHHHhhchhH-------HHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 016266 67 ILYTSFTCFSLVASLVVRVLGSKN-------ALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTA 138 (392)
Q Consensus 67 ~~~~~~~v~~~~~g~l~dr~G~r~-------~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~ 138 (392)
+...+..++.++.|+++||+|||+ ...+...+.++.... ...++....+..-++.+++.+........+..+
T Consensus 296 ~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 375 (476)
T PLN00028 296 SFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPF 375 (476)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcc
Confidence 344455678899999999999762 222222221121111 123344333333445555443322222222222
Q ss_pred HhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCc
Q 016266 139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE 217 (392)
Q Consensus 139 ~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~ 217 (392)
. .+++||...|+......+|+.+++ .+.... +..+|+.. |.+.+++.+++.+..++++.+.
T Consensus 376 ~-----------~~~~~g~~~g~~~~~g~lg~~i~~----~l~~~~--~~~~y~~~-f~~~~~~~~i~~~~~~~~~~~~ 436 (476)
T PLN00028 376 V-----------SRRSLGVISGLTGAGGNVGAVLTQ----LLFFTG--SSYSTETG-ISLMGVMIIACTLPVAFIHFPQ 436 (476)
T ss_pred c-----------ChhhchhhhhhhhccccHHHHHHH----HHHHhc--CCccHhhH-HHHHHHHHHHHHHHHHheeccc
Confidence 2 456899999987544444444443 332211 12346554 5566666677776666666543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-05 Score=73.21 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=62.4
Q ss_pred HHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h-----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~-----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
....++.++.|++.||+|+|+.+..+..+..+..... . .+++..++....+.|++.+...+....+..+.
T Consensus 253 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---- 328 (385)
T TIGR00710 253 IAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALED---- 328 (385)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 3445678899999999999999888766554433221 1 12344445556778888887777655544433
Q ss_pred hhhcCCCccchhhhhHHHHHHHHH-HhhhhhhHhh
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFA-SHQFVGNLIT 177 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~-~g~~~G~~i~ 177 (392)
.|++||++.++...... .|...+++++
T Consensus 329 -------~~~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 329 -------FPHVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred -------CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999998765543 3445555444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.2e-06 Score=77.84 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=70.9
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-h---chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~---~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
......++.++.|++.||+|+|+..........+..... . .++....+..-++.|++.+...+....+..+..
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 328 (352)
T PF07690_consen 252 FGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELV--- 328 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 333344567889999999999888877776655544432 2 234455555778899988888777777666654
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhh
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGN 174 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~ 174 (392)
|+++||++.|+.....++|..+||
T Consensus 329 -------~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 329 -------PPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp -------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 789999999999888888887775
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.25 E-value=5e-06 Score=83.22 Aligned_cols=98 Identities=10% Similarity=0.115 Sum_probs=74.8
Q ss_pred cccchhhHHHHHHhHHHHHHHhhhhhhccC-CCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhh
Q 016266 281 LGVSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 359 (392)
Q Consensus 281 ~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~-~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~ 359 (392)
++..+++.+...+.++..++++++|+++|| +|||+.+ .++.++..++.++ +...++ ...+++...+.|++.
T Consensus 45 ~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l-~~~~~~~~~g~~~--~~~~~~-----~~~~~~~~~l~g~g~ 116 (475)
T TIGR00924 45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM-VLGGIVLMLGHFM--LAMSIY-----PDLIFYGLGTIAVGS 116 (475)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH-HHHHHHHHHHHHH--HHhccc-----HhHHHHHHHHHHhcc
Confidence 334578899999999999999999999999 8998854 5677777766543 234433 245666677899999
Q ss_pred hhhhhHHHHHHHhhccCC----ccccchhhh
Q 016266 360 GVLNTQLSALLGILFKHD----TVTANPTLI 386 (392)
Q Consensus 360 ~~~~~~~~a~~~~~~p~~----~~~a~~~~~ 386 (392)
+...+..+++++|.+|++ ++.+++.+.
T Consensus 117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~ 147 (475)
T TIGR00924 117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFY 147 (475)
T ss_pred ccccCCHHHHHHHhcCCCCcccccceehhHH
Confidence 999999999999999753 566777544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=78.96 Aligned_cols=101 Identities=16% Similarity=0.018 Sum_probs=74.6
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--h--hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~--~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
...++.++.|++.||+|+|+.+..+.++..+.... . ..++.......-++.|+|.|...+.......+..
T Consensus 307 ~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~------ 380 (495)
T PRK14995 307 ASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAA------ 380 (495)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC------
Confidence 34567789999999999999988887766544332 1 2234445566778999999987776555555443
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
|++++|.+.++.....++|..+|..+...+.
T Consensus 381 ----~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 381 ----PPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred ----CHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999998888999988887766553
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.5e-05 Score=73.39 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=66.4
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----hh-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NL-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
..++.++.|++.||+|+|+.+..+..+..+.... .. .++.+.+++.-.++++..+..............+
T Consensus 259 ~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----- 333 (402)
T PRK11902 259 TIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCN----- 333 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 4467788999999999999987776654433221 12 2344444444444333333333333333333332
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
+..|+++ .+.+.+..+++...++.+++.+.++ .||+. +|.+...+.+++.++....+
T Consensus 334 -~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~-----~G~~~-~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 334 -RSFSATQ----YALLSALASVGRVYVGPTSGYLVEA-----YGWPG-FYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred -CCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----hChHH-HHHHHHHHHHHHHHHHHHHh
Confidence 1123333 3444444456666555566665543 46765 35555555555544443333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.9e-05 Score=72.28 Aligned_cols=100 Identities=13% Similarity=0.013 Sum_probs=63.9
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-----h-hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-----N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-----~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
...++.++.+++.||+|+|+.+........+.... . ..+++..++..-.+.|++.+...+....+..+.
T Consensus 250 ~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 324 (401)
T PRK11043 250 AFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRP----- 324 (401)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 34456677889999999999775554443332211 1 134455455556777888888777655544433
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
.+++||++.|++......+...++.+.+.+.
T Consensus 325 ------~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 325 ------FPQATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred ------CcccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3468999999988766666666666655543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.8e-05 Score=71.86 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH---h-h-hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA---A-N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~---~-~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
...++.++.|++.||+|||+.+.++..+..+... . . ...+.+.....-.+.+.+.+........++.+.
T Consensus 242 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 315 (377)
T PRK11102 242 FLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDE------ 315 (377)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcc------
Confidence 4456778899999999999999888765332211 1 1 122333333333333333333333322322221
Q ss_pred hcCCCccchhhhhHHHHHHH-HHHhhhhhhHhh
Q 016266 146 NHKLHEGTVIGSFNGEFWGM-FASHQFVGNLIT 177 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~-~~~g~~~G~~i~ 177 (392)
.|++||.+.++.... ...|+.+|++++
T Consensus 316 -----~~~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 316 -----FPHMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred -----ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999876443 345555665553
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.6e-05 Score=75.56 Aligned_cols=107 Identities=7% Similarity=0.004 Sum_probs=74.2
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH-hh-h-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVA-AN-L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~-~~-~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
.++.++.+++.||+|+|+.+..+..+..+... .. . .++...+++..++.|++.+...+...+.++|..+.. +. .
T Consensus 278 ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~-e~--~ 354 (444)
T PRK09669 278 LFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYE-EK--R 354 (444)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh--h
Confidence 35567889999999999999888765543222 22 2 245556677778999999999888888888876421 00 0
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.-+++.|..+|.......+|..+|+.+++.+..
T Consensus 355 ~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 355 SGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred cCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012334677787777778888898888776654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.4e-05 Score=72.43 Aligned_cols=108 Identities=12% Similarity=-0.105 Sum_probs=65.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhH---HHHHHHhh-h--chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTG---YWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~---~~l~~~~~-~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
+.......++.++.|++.||.++|+........ ..+..... . ..+....+...++.|+......+....+..+.
T Consensus 259 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (379)
T TIGR00881 259 TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASEL 338 (379)
T ss_pred HHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 333344557788899999987433322222111 11111111 1 23444444556666765544444444555555
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
. |+++||++.|++.....+|..+|+.+.+.+.++
T Consensus 339 ~----------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 339 A----------PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred c----------CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 4 788999999999988999999999888777654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=80.69 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=68.7
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhccCC-CCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhh
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~-g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
+.++++.+...+.+...++.+++|+++||+ ||||.+ .+|.++..++.++ +...+.. ....++...+.+++.+
T Consensus 43 s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i-liG~il~~lg~ll--l~~~~~~----~~~~~l~l~li~iG~G 115 (493)
T PRK15462 43 DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV-MLGALLMAIGHVV--LGASEIH----PSFLYLSLAIIVCGYG 115 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH-HHHHHHHHHHHHH--HHHhhcc----hhHHHHHHHHHHHhcc
Confidence 344677788888888999999999999999 998854 5677777666432 2222211 1234444455666777
Q ss_pred hhhhHHHHHHHhhccC---Cccccchhhh
Q 016266 361 VLNTQLSALLGILFKH---DTVTANPTLI 386 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~---~~~~a~~~~~ 386 (392)
...+..+++++|.||+ +|+++++.+.
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y 144 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMY 144 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHH
Confidence 7788889999999985 3677777654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.7e-06 Score=80.33 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=76.4
Q ss_pred cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 283 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 283 ~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
.++.+.+.+.+.++..+++++.|+++||+|||+.+ ..+.++..++.+. ..+.++ ...+++.-++.|++.+..
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~-~~~~~~~~~~~~~--~~~~~~-----~~~l~~~r~l~G~~~~~~ 113 (412)
T TIGR02332 42 ATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI-AGIMVLWGIASTA--TMFATG-----PESLYLLRILVGIAEAGF 113 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH-HHHHHHHHHHHHH--HHHhcC-----HHHHHHHHHHHHHHHhhH
Confidence 45788899999999999999999999999999854 5666666665443 234444 356778888999999999
Q ss_pred hhHHHHHHHhhccC-Cccccchhhh
Q 016266 363 NTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 363 ~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.+...+++.|.+|+ +|+.+.+.++
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~ 138 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFM 138 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99999999999985 5778888775
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=80.73 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred hhccccccc--hhhHHHHHHhHHHHHHHhhhhhhccC-CCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHH
Q 016266 276 IVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA 352 (392)
Q Consensus 276 ~~~~~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~-~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 352 (392)
|.++++|.+ ++..+...+.....+..+++|+++|| +||||.+ ..+.++..++.+.+ ...++. ...+++..
T Consensus 40 yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~-~~g~~~~~~g~~~~--~~~~~~----~~ll~~~~ 112 (489)
T PRK10207 40 FFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI-VLGAIVLAIGYFMT--GMSLLK----PDLIFIAL 112 (489)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH-HHHHHHHHHHHHHH--HHhccc----hhHHHHHH
Confidence 333445543 45666677777777778899999999 9999854 57777777765432 233332 13455667
Q ss_pred HHHhhhhhhhhhHHHHHHHhhccCCc---cccchhh
Q 016266 353 ALLGIGDGVLNTQLSALLGILFKHDT---VTANPTL 385 (392)
Q Consensus 353 ~l~G~~~~~~~~~~~a~~~~~~p~~~---~~a~~~~ 385 (392)
++.|++.+...+...++++|.||+++ +.+++.+
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~ 148 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLF 148 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHH
Confidence 78899999999999999999997543 4455544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=72.87 Aligned_cols=75 Identities=9% Similarity=-0.002 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhHhhhcc-CC-CchhHH-HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHH
Q 016266 29 DVHILSCAFLLIFLAYGAAQNLETTVNT-EG-NLGTIS-LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV 103 (392)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~-~~g~~~-~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~ 103 (392)
+.+.+++..++.|..|......-+.+.. +. +..... ..+......+..++.|+++||+|+|+++.++.+...+..
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS 330 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3455666666666666554432222211 11 111111 111123345677999999999999999998887655544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-05 Score=83.76 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=77.3
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...+++++.|++.||+++|+++.++.++.++.... ...++...+++..++.|++.+...+...+++.+..
T Consensus 281 g~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------- 351 (1146)
T PRK08633 281 GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA--------- 351 (1146)
T ss_pred HHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC---------
Confidence 44567788999999999999988887766654443 34556666677789999999988887777776664
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
|+++||+++|+......+|..+++.++..+.
T Consensus 352 -p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 352 -PEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred -CccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999988888888877776665543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00019 Score=65.10 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=69.1
Q ss_pred HhHhhhccC-CCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH----h--h-hc-hhhHHHHHHHH
Q 016266 49 NLETTVNTE-GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA----A--N-LF-PSWYTMVPASL 119 (392)
Q Consensus 49 ~l~~~l~~~-~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~----~--~-~~-~~~~~l~~~r~ 119 (392)
.+.+.++.+ +++..++...-.+.+ ..++.|.+.|++|+|.++.+|.+...++-. . . .. ++++.+...-.
T Consensus 27 ~Lk~~l~~sq~~l~~l~~~~~~G~~--~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~ 104 (250)
T PF06813_consen 27 QLKSRLGYSQSQLNTLSTAGDIGSY--FGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF 104 (250)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence 444444433 333333333333322 358899999999999999998875433221 1 1 22 46677777777
Q ss_pred HHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhh
Q 016266 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN 174 (392)
Q Consensus 120 l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~ 174 (392)
+.|.+.+...++......++ .|++||.+.|+.-....++..+=.
T Consensus 105 l~~~s~~~~~ta~lvt~~~N-----------FP~~RG~vvgilk~~~GLSaai~t 148 (250)
T PF06813_consen 105 LGGNSSCWFNTASLVTCVRN-----------FPRSRGTVVGILKGFFGLSAAIFT 148 (250)
T ss_pred HHcccHHHhhhHHHHHHHHh-----------CccccCceehhhhHHHHhHHHHHH
Confidence 77777666555544433344 356899999998777776654433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00022 Score=67.20 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..+.+...+.++.++.+++.||+|+|+++.++..+..+..... ..++....+ .=.+.|++.+..+|...+...+..
T Consensus 183 ~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~-- 259 (310)
T TIGR01272 183 FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALNAL-- 259 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 3566666778899999999999999999888776655544332 223332222 335789999999998766555542
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
+++.+.+.++. ....+|..++|.+.+.+.+
T Consensus 260 ---------~~~~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 260 ---------GRHTSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred ---------hhhhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 33456666664 4455777777776555544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-05 Score=72.54 Aligned_cols=169 Identities=12% Similarity=0.015 Sum_probs=95.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHhHhhhc-cCCCchh----HHHHHHHHHHhhhhhhHHHHHHhh--chhHHHHHhhhH
Q 016266 26 YTRDVHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGT----ISLGILYTSFTCFSLVASLVVRVL--GSKNALILGTTG 98 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~--G~r~~l~~g~~~ 98 (392)
+.|.++.++++.+++|.....+..-.+.+- +.++.+. +..+.+=..-..+.+++|+++||+ |||..+.+...+
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 446778888999999988776654444432 2244443 334444444456789999999997 566666544433
Q ss_pred -HHHHHHhh-hch--hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH-hhhhh
Q 016266 99 -YWLFVAAN-LFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVG 173 (392)
Q Consensus 99 -~~l~~~~~-~~~--~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~-g~~~G 173 (392)
..++.+.. ..| |+....++-...|+..-+---..+....|. .|.|--|.+.|+......+ |...+
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~----------~pK~AaGtA~Gf~Glf~Yl~Ga~~a 399 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEF----------VPKKAAGTATGFVGLFAYLIGAALA 399 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhcc----------ccHhhccchhchhhhHHHHhhHHhc
Confidence 33333332 333 445555566666765533212223333333 3777789999987654444 44444
Q ss_pred hHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 174 NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 174 ~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
+...+.+.+ .+||... |+++.+.++++.++.
T Consensus 400 ~~~~g~i~d-----~~gW~g~-Fi~~~~~a~l~~lll 430 (448)
T COG2271 400 GLPLGYIAD-----TWGWDGG-FIVLSIAALLAILLL 430 (448)
T ss_pred CCcceeeEe-----cCCCcch-HHHHHHHHHHHHHHH
Confidence 433333322 2578663 666666556555544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=77.10 Aligned_cols=126 Identities=14% Similarity=0.044 Sum_probs=84.0
Q ss_pred HHHHHHHHhhhHHhhhhhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHH
Q 016266 252 LLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL 330 (392)
Q Consensus 252 ~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~ 330 (392)
..+...++..|+......+ ..|.+. +.+.+..+.+.+.+.+.++..+++++.|++.||+|+|+. +..+.++.+++.+
T Consensus 6 ~~~~~~f~~~G~~~~~~~~-l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-~~~g~~l~~~g~~ 83 (410)
T TIGR00885 6 ALITSLFALWGFANDITNP-MVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-ILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHH
Confidence 3444444445554443322 223332 122344578999999999999999999999999999885 4567777776654
Q ss_pred HHHhcccc-CCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchh
Q 016266 331 WILINYSV-TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPT 384 (392)
Q Consensus 331 ~~~~~~~~-~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~ 384 (392)
+. .... .++ ++.+++..++.|++.+..++..++++.++.|+++ +.+.+.
T Consensus 84 l~--~~~~~~~~---~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (410)
T TIGR00885 84 LF--WPAAEIMN---YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNL 134 (410)
T ss_pred HH--HHHHhhcc---HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHH
Confidence 32 1111 111 4667778889999999999999999999887544 434443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00017 Score=70.27 Aligned_cols=100 Identities=14% Similarity=-0.037 Sum_probs=68.9
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...+++++.+++.||+++|+++..+.. .++.... ...++++..+..-++.|++.+...+...+.+.+..
T Consensus 253 g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~--------- 322 (393)
T PRK11195 253 GIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRG--------- 322 (393)
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhC---------
Confidence 345667888899999999988877753 2322222 23456665566667889988887766666554432
Q ss_pred Cccch-hhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 150 HEGTV-IGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 150 ~~~~~-rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
|+++ +|++.++.....+++..+|..+...+.
T Consensus 323 -~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 323 -HVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred -cccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4443 799999998888999888887776553
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0038 Score=61.95 Aligned_cols=280 Identities=11% Similarity=0.079 Sum_probs=132.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCC-CchhHHHHH----HHHHHh-hhhhhHHHHHHhhchhHHHHHhhhH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEG-NLGTISLGI----LYTSFT-CFSLVASLVVRVLGSKNALILGTTG 98 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~g~~~~~~----~~~~~~-v~~~~~g~l~dr~G~r~~l~~g~~~ 98 (392)
+.++.++.+++-++++...|..+-.+.+.+..+. +.|...... .....+ +..+..+++++|++|++.+-+-...
T Consensus 4 ~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~ 83 (472)
T TIGR00769 4 HELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP 83 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence 4456777888888888888888888877765432 122111111 111122 2256789999999999998776665
Q ss_pred HHHHHHhh---hchhhH-----------------------------HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhh
Q 016266 99 YWLFVAAN---LFPSWY-----------------------------TMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146 (392)
Q Consensus 99 ~~l~~~~~---~~~~~~-----------------------------~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~ 146 (392)
+..+...+ +.|+-. .....-+...+ |.. ..++-. =|...
T Consensus 84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el-----w~~--~vvS~l--FW~fa 154 (472)
T TIGR00769 84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL-----WGS--VVLSLL--FWGFA 154 (472)
T ss_pred HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH-----HHH--HHHHHH--HHHHH
Confidence 54433221 111100 00001111111 111 000000 12223
Q ss_pred cCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC---CCCCCcchh---HHHHHHHHHHHHHHHHHhccCCc-cc
Q 016266 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTL---LFIVFLGVITLGTILMCFLRKEE-DK 219 (392)
Q Consensus 147 ~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~---~~~~~wr~~---~f~i~~~~~~~~~~~~~~~~~~~-~~ 219 (392)
.|...++|-.|.++++.++.++|.++|+.+...+.+..+ .+...|-.. ++.+..++..+...+...+.+.. +.
T Consensus 155 ndi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~ 234 (472)
T TIGR00769 155 NQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTD 234 (472)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 344466777899999999999999998877655542111 111123111 11222222222222222322211 10
Q ss_pred cc---cccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccccc----chhhHHHHH
Q 016266 220 GE---KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV----SGVGGAMAV 292 (392)
Q Consensus 220 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g~----s~~~~~~~~ 292 (392)
++ .++.+++++++.+..+.++ ..+++|.++.+..+.+..+....+....+.....+..-+. .-.|.....
T Consensus 235 ~~~~~~~~~~~k~k~k~~~~es~k---~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~ 311 (472)
T TIGR00769 235 PRSYNPALKEKKVKPKMSTMESLK---FLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTW 311 (472)
T ss_pred ccccchhhccccCCCCCCHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 10 0001111111223344333 4567777666655544444433332222211111100011 123444556
Q ss_pred HhHHHHHHHhhhhhhccCCCCchh
Q 016266 293 YGAFDAICSLAAGRLTTGLPSITF 316 (392)
Q Consensus 293 ~gi~~~~g~~~~G~lsd~~g~r~~ 316 (392)
.|+..++..++.+++.+|+|.+..
T Consensus 312 ~gi~tl~~~l~~~~l~~~~Gw~~~ 335 (472)
T TIGR00769 312 TGVVSVTMMLLSGNVIRKYGWLTA 335 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 677777777777999999997643
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=72.31 Aligned_cols=129 Identities=13% Similarity=-0.076 Sum_probs=65.4
Q ss_pred HHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH---HHHHhh-h--chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYW---LFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 68 ~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~---l~~~~~-~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
......++.+..|++.||+|+|+....+..... +..... . ..+.......-++.|++.............+..
T Consensus 296 ~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 374 (438)
T TIGR00712 296 YEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELA- 374 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhc-
Confidence 333455678899999999975443223322211 111111 1 123332222333444432211111122333443
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHh-hhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASH-QFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g-~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
|+++||.++|+.......| ..+|+.+.+.+..+. ||... +.+..+..+++.+..++
T Consensus 375 ---------~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 375 ---------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----GWDGG-FMVMIGGSILAVILLIV 431 (438)
T ss_pred ---------ChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-----cchHH-HHHHHHHHHHHHHHHHH
Confidence 7789999999887665655 467887777665532 45443 44444444555544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00026 Score=68.72 Aligned_cols=35 Identities=3% Similarity=0.063 Sum_probs=27.1
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA 105 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~ 105 (392)
...++.++.+++.||+|||+.+.++..+..+....
T Consensus 251 ~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 285 (392)
T PRK10473 251 VSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGIT 285 (392)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999888766554443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.7e-05 Score=74.10 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=95.5
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHH-HHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCc
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE 151 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l-~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (392)
...-++.+++.+|+|+-+++.+++.+..+ +..-....|+|..++.-+++|+..+..|.+..+|+++.+ |
T Consensus 420 I~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va----------P 489 (618)
T KOG3762|consen 420 ILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA----------P 489 (618)
T ss_pred HHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC----------C
Confidence 34456788999999999999999988766 333346789999999999999999999999999999988 8
Q ss_pred cchhhhhHHHHHHHH-HHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 152 GTVIGSFNGEFWGMF-ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 152 ~~~rg~~~g~~~~~~-~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
|+-|..+-|++.... .+|-.+|.++++.+.... +-|. .|.++++..++.+++.+.
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-----g~~t-tf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-----GART-TFRIFGIACLVTLALFIS 545 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhheee-----hhHH-HHHHHHHHHHHHHHHHHH
Confidence 888988888775544 667777888887776543 3454 477777666655554433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=71.27 Aligned_cols=105 Identities=8% Similarity=-0.181 Sum_probs=66.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
...+.....++.++.+++.||+|+|+++..+..+..+.... ...++... +..-.+.|++.+..+|...+...+.
T Consensus 301 ~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~---- 375 (438)
T PRK10133 301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKN---- 375 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 34444456678899999999999999988887654433332 23344322 3344778999999999876655443
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.+|+.+.+.++... ...|..+++.+.+.+.+
T Consensus 376 -------~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 376 -------LGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSD 406 (438)
T ss_pred -------cchhhccchhHHhH-HhccchHHHHHHHHHHH
Confidence 33456677776643 33455555555555544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.1e-05 Score=74.13 Aligned_cols=109 Identities=9% Similarity=-0.064 Sum_probs=73.7
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh-----h-chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~-----~-~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
...++.++.+++.||+|+|+++.++..+..+..... . .++...+++.-++.|++.+..++...++++|..+...
T Consensus 278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344567888999999999999988776544332221 1 2345555667788999999988888888888764210
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.. .-.++.|..+|.......+|..+|+.+.+.+..
T Consensus 358 ~~---tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 358 YK---LGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred Hh---cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012234668888877778888888877666543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00035 Score=67.60 Aligned_cols=166 Identities=9% Similarity=0.015 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchh---HHHHH-hhhHHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSK---NALIL-GTTGYWLFV 103 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r---~~l~~-g~~~~~l~~ 103 (392)
+..+.+.+..++....+.....-.+.+-.+.+.+..........+..+.+..+.+.||..|| +.... .....++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~ 271 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFF 271 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33455555555555555544443333333333332211111122223334457788877653 33332 222222221
Q ss_pred Hh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 104 AA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 104 ~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
.. ....+....+..-.+.|++....++....+.+|.. |++.||+++|+......+|...++++...+..
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 272 LALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFC----------DKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred HHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhc----------chhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 11 12222322233334555655555555566777765 88999999999998888888888776655442
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 183 DDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 183 ~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
+-.. .|.++++..+++.+..+
T Consensus 342 -------~~~~-~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 -------SAEA-YFTFLAILITIAFAIAL 362 (368)
T ss_pred -------CHHH-HHHHHHHHHHHHHHHHH
Confidence 1112 35555555555444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00061 Score=66.46 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=65.5
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHH-HHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCC
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLF-VAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~-~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 150 (392)
.++.++.+++.||.+ |+.+..+..+..+. ... ...++.+.+....++.|++.+...+...+++.+..
T Consensus 266 iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~---------- 334 (394)
T PRK10213 266 FVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL---------- 334 (394)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC----------
Confidence 345567788888854 44444444433322 222 23455566666788899988887777666665543
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 151 ~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
| ++++++.+......++|..+|+.+++.+.+.
T Consensus 335 ~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~ 366 (394)
T PRK10213 335 A-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN 366 (394)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 5677778877778889999999998888764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00039 Score=67.60 Aligned_cols=61 Identities=10% Similarity=0.089 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 110 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
+.+.++...++.|++.+...+....+..+.. |+++|.+.++......+|..+|+.+...+.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PYLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455666778899999988888777666553 357899999988888888888887766543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.2e-05 Score=74.18 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcccc-CCCccchHHHHHHHHHHhhhhh
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~-~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
+..+.+++...+.++..++.++.|+++||+|||+.+ .++.++..++.++ ..+.+ + ++.+++..++.|++.+
T Consensus 35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~i~~~~--~~~~~~~-----~~~~~~~~~~~g~~~~ 106 (366)
T TIGR00886 35 STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT-TLSLLLLAIPCLW--AGLAVQS-----YSVLLLLRLFIGIAGG 106 (366)
T ss_pred CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHH--HHHHhhh-----HHHHHHHHHHHHHhch
Confidence 344678889999999999999999999999998854 4677666666443 23333 3 4667777888899866
Q ss_pred hhhhHHHHHHHhhccC-Cccccchhhh
Q 016266 361 VLNTQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
.. +...+++.|.+|+ +|+.+.+.+.
T Consensus 107 ~~-~~~~~~~~~~~~~~~r~~~~~~~~ 132 (366)
T TIGR00886 107 SF-ASCMPWISFFFPKKIQGTALGLAA 132 (366)
T ss_pred hh-HhHHHHHHHhcCHhhhhHHHHHHH
Confidence 54 5678899999974 5677777654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.8e-05 Score=77.39 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=68.3
Q ss_pred chhhhccccccc--hhhHHHHHHhHHHHHHHhhhhhhccC-CCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHH
Q 016266 273 TKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL 349 (392)
Q Consensus 273 ~~~~~~~~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~-~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 349 (392)
.+.+.++++|.+ +++.+...+........+++|+++|| +|||+.+ ..+.++..++..+ +...++. ...++
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~-~~g~~~~~ig~~l--~~~~~~~----~~~l~ 116 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI-MLGAIVLAIGYAL--VAWSGHD----AGIVY 116 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHH--HHHhccc----HHHHH
Confidence 344444445554 44555555554445556789999999 5998754 5677666666443 2233222 24455
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHhhccCCc---cccchhh
Q 016266 350 IMAALLGIGDGVLNTQLSALLGILFKHDT---VTANPTL 385 (392)
Q Consensus 350 i~~~l~G~~~~~~~~~~~a~~~~~~p~~~---~~a~~~~ 385 (392)
+..++.|++.+...+...+++++.||+++ +.+++.+
T Consensus 117 ~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~ 155 (500)
T PRK09584 117 MGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMY 155 (500)
T ss_pred HHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHH
Confidence 66678899999999999999999998543 2366643
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.2e-05 Score=69.87 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=81.0
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h--hchhhH--HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N--LFPSWY--TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~--~~~~~~--~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
-+.++.+.++||+|||++|.++.++++++... . ..++.. ++..+|+.... .+...+.|-.|..
T Consensus 396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqvaYvYtPEVy-------- 463 (528)
T KOG0253|consen 396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVAYVYTPEVY-------- 463 (528)
T ss_pred CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEEEEecCccc--------
Confidence 45688999999999999999999999887764 2 234443 34455655443 3344566777765
Q ss_pred CCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 149 ~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
|.+-|+...|.-.++.-.|.++.|+++. ..+. +- .....++..+.+++.++..++|
T Consensus 464 --PTavRatgvGtcSsmaRIggI~~p~iA~-~~e~------s~-sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 464 --PTAVRATGVGTCSSMARIGGIFSPVIAM-RAEL------ST-SLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred --chhhhhcchhhhhhHHhhhhhhhhHHHH-Hhcc------ce-eehHHHHHHHHHHHHHHheeee
Confidence 8889999999877777777788877772 2221 11 2235567777777777666665
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.2e-06 Score=78.62 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=82.6
Q ss_pred cccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhh
Q 016266 281 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 281 ~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
.+.+..|++..++.+..+++++++|+|.||++|++ ++.+|..+-.++.+. ..+. + .++.+.++-.+.|+|.+
T Consensus 65 i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-v~~vG~~iW~~Av~~--~~fs-~----~Fwq~~l~R~~vGiGeA 136 (493)
T KOG1330|consen 65 ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR-VIAVGIFIWTLAVFA--SGFS-N----HFWQVLLCRGFVGIGEA 136 (493)
T ss_pred CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce-EEeeHHHHHHHHHHH--HHHH-H----HHHHHHHHHHHhccchh
Confidence 45567788889999999999999999999999876 456777666655332 2233 2 16889999999999999
Q ss_pred hhhhHHHHHHHhhccC-Cccccchhhhhhhh
Q 016266 361 VLNTQLSALLGILFKH-DTVTANPTLIRQIF 390 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~-~~~~a~~~~~~~~~ 390 (392)
.+.|..+++++|.||+ +|+..+++++..|-
T Consensus 137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip 167 (493)
T KOG1330|consen 137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIP 167 (493)
T ss_pred hhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence 9999999999999984 67889999988764
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.5e-05 Score=74.67 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=67.8
Q ss_pred cchhhHHHHHHhHHHHHHHhhhhhhcc----CCCCchhhHHHHHHHHHHHHHHHHhccccCCC------------ccchH
Q 016266 283 VSGVGGAMAVYGAFDAICSLAAGRLTT----GLPSITFIVSGGAIAQVVVFLWILINYSVTSG------------VLGTL 346 (392)
Q Consensus 283 ~s~~~~~~~~~gi~~~~g~~~~G~lsd----~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~------------~~~~~ 346 (392)
....+.+..+..+...+..++.|+++| |+|||++.+..+.+...+++++ +.+.++.. ....+
T Consensus 38 ~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l--l~~~~~~~~~~~~~~~~~~~~~~i~ 115 (477)
T TIGR01301 38 HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL--IGFAADIGHLFGDNLDKKTKPRAII 115 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH--HHhCchhhhhccccccccchhHHHH
Confidence 346788888999999999999999999 5999998766566666555443 23432210 00001
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc---cccchhh
Q 016266 347 YPLIMAALLGIGDGVLNTQLSALLGILFKHDT---VTANPTL 385 (392)
Q Consensus 347 ~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~---~~a~~~~ 385 (392)
...+...+..++....++...++++|..|++. +.|+++.
T Consensus 116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~ 157 (477)
T TIGR01301 116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF 157 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence 23334445666778888899999999998653 2466653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=72.55 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=92.0
Q ss_pred hhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHhh--h---------chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhh
Q 016266 73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L---------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL 141 (392)
Q Consensus 73 ~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~--~---------~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~ 141 (392)
.++....+++.+|++.|+++.++.++..+..... . .++....+...++.+++.+..+.+...++++..
T Consensus 302 i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~- 380 (468)
T TIGR00788 302 LCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLC- 380 (468)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhC-
Confidence 3456677888899999999999998877654321 1 134445556678999999999898888888876
Q ss_pred hhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC--CCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 016266 142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GSTSGTTLLFIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 142 ~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~--~~~~wr~~~f~i~~~~~~~~~~~~~~~~~ 215 (392)
|++++|..++++.+..++|..+|+.++..+.+..+. ..++.++....+..+..++.+....++|+
T Consensus 381 ---------p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 381 ---------PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ---------CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888999999999999999999999888877765431 11222332222333333344444456665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00019 Score=79.75 Aligned_cols=106 Identities=14% Similarity=-0.016 Sum_probs=77.0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhc--------------------hhhHHHHHHHHHHhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLF--------------------PSWYTMVPASLYLGFA 124 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~--------------------~~~~~l~~~r~l~Gig 124 (392)
+....+..+++++.|++.|+.++++.+..+.++.+++.+. .+. ++.+.+++..++.|++
T Consensus 268 ~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAA 347 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHH
Confidence 3444455677888999999888877766665554433221 111 4555666777889999
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 125 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
.+...+...+++.+.. |+++||+++|.......+|..+|+++.+.+.
T Consensus 348 ~~~~~~~~~~~~~~~~----------p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 348 GGLYIVPLFAALQAWA----------NPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHhHHHHHHHHHhhC----------CcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888777777765 8899999999999888888888888776664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0004 Score=68.22 Aligned_cols=152 Identities=13% Similarity=-0.022 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhhhccC-CCchh----HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF 102 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~g~----~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~ 102 (392)
|.+..+.+..++.+.+++..+.+...+... .+... ...........++.++.+++.+|+|+|+++.++.+++.+.
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence 445555556666666655544443333211 11111 1111121222344688999999999999999999888776
Q ss_pred HHhh-hc--hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 103 VAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 103 ~~~~-~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
.+.. +. ++..++++..++.++|.+...+..-+.++|..+.-...+ -.++-|...|......-+|..+|+.+.+.
T Consensus 316 ~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T---G~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 316 YLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT---GVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh---CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 33 467778888999999999888877777777654211111 11223666666655566777787766655
Q ss_pred hcc
Q 016266 180 VLK 182 (392)
Q Consensus 180 ~~~ 182 (392)
.+.
T Consensus 393 ~L~ 395 (467)
T COG2211 393 ILG 395 (467)
T ss_pred HHH
Confidence 543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00061 Score=67.93 Aligned_cols=107 Identities=8% Similarity=-0.086 Sum_probs=59.9
Q ss_pred HhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH-hhhch--hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcC
Q 016266 72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK 148 (392)
Q Consensus 72 ~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~-~~~~~--~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~ 148 (392)
..++.+++++++||+|+|+++..+..+..+... ..+.+ +...+++.-++.|++.+...+.....++|..+.. +
T Consensus 276 ~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~-e--- 351 (460)
T PRK11462 276 NLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYG-E--- 351 (460)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-H---
Confidence 345667899999999999987655443322111 12222 2222333445667777666555556666665311 1
Q ss_pred CCc-cchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 149 LHE-GTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 149 ~~~-~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
+.. .++.|..++......-+|..+|+.+++.++.
T Consensus 352 ~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 352 WCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 2223555566555667788888777665543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=69.08 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=96.2
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHhHhhh-ccCCCchhHHHH----HHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 26 YTRDVHILSCAFLLIFLAYGAAQNLETTV-NTEGNLGTISLG----ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~g~~~~~----~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
..++.+.+++-+...|-++......-+.+ .++.+++....+ .+-..-++.-+..|+++||+|.+|++.......+
T Consensus 216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMA 295 (417)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHH
Confidence 35777888889999988887666443433 333333333322 2222234556889999999999999988877766
Q ss_pred HHHHh-hhc-------hhh----HHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH
Q 016266 101 LFVAA-NLF-------PSW----YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS 168 (392)
Q Consensus 101 l~~~~-~~~-------~~~----~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~ 168 (392)
+.... ... ++. ..++...+..|+|.|.. ...+..++ +++-|.+.|+..+...+
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if-----------~~~~G~v~G~vga~G~l 360 (417)
T COG2223 296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIF-----------PKETGAVTGIVGAIGGL 360 (417)
T ss_pred HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHH-----------HhhhhHHHHHHHHhccc
Confidence 55443 221 222 24556678888888754 44455553 45888999988766665
Q ss_pred hhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 169 g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
|...=|..-....+.. |-....|+++..+.+++.++.
T Consensus 361 GGf~lp~~~g~~~~~t-----g~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 361 GGFFLPLAFGVSLDLT-----GSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred cccchhHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHH
Confidence 5433222222222222 222334555555555555544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00052 Score=68.41 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHH--------HHhhhH--HHHHHHh-hh-chhhHHHHHHHHHHhhhHHHHHhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNAL--------ILGTTG--YWLFVAA-NL-FPSWYTMVPASLYLGFAASIIWVGE 132 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l--------~~g~~~--~~l~~~~-~~-~~~~~~l~~~r~l~Gig~g~~~~~~ 132 (392)
.++.+....++.++.|+++||+++|+.. ..+... ..+.... .. ..+....+..-.+.+.+.+...+..
T Consensus 303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 382 (465)
T TIGR00894 303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGV 382 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhh
Confidence 3444555667889999999998865322 111111 1111111 11 2233322222233333333322222
Q ss_pred hHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
.....+. .++.+|.++|+......+|+.+++.+...+.+... ..+|+. .|.+.++..+++.+....
T Consensus 383 ~~~~~~~-----------~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~--~~~~~~-~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 383 LINSLDL-----------APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS--KNVWLI-VFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhchhhc-----------ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC--chHHHH-HHHHHHHHHHHHHHHeee
Confidence 2212222 34588999998877777777777666554433211 112544 355555555555554443
Q ss_pred cc
Q 016266 213 LR 214 (392)
Q Consensus 213 ~~ 214 (392)
+.
T Consensus 449 ~~ 450 (465)
T TIGR00894 449 FG 450 (465)
T ss_pred ee
Confidence 33
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00026 Score=64.62 Aligned_cols=117 Identities=18% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH-hhhch--hhHHHHHHHHHHhhhHHHHHhhhhHHHHHHh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAA 140 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~-~~~~~--~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~ 140 (392)
..+.......+++++.|.+.||+|||+.+..+...+.+... ..+.+ +...++..|..+|++.+...+....++.++.
T Consensus 44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 123 (338)
T COG0477 44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123 (338)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 34455555666778999999999999888888765333322 22333 4778888999999999988888888888875
Q ss_pred hhhhhhcCCCcc-chhhhhHHHHHH-HHHHhhhhhhHhhhhhccCCCCCCCCcch
Q 016266 141 LSHASNHKLHEG-TVIGSFNGEFWG-MFASHQFVGNLITLAVLKDDKGGSTSGTT 193 (392)
Q Consensus 141 ~~~~~~~~~~~~-~~rg~~~g~~~~-~~~~g~~~G~~i~~~~~~~~~~~~~~wr~ 193 (392)
|+ ++|+...+.... ....|..+|+.++..+... ...+||.
T Consensus 124 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 165 (338)
T COG0477 124 ----------PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---LLWGWRA 165 (338)
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHH
Confidence 44 578998888877 4677778887666555443 2346776
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=74.25 Aligned_cols=114 Identities=7% Similarity=0.002 Sum_probs=75.5
Q ss_pred cccchhhhccccccc--hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHH
Q 016266 270 AEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY 347 (392)
Q Consensus 270 ~~~~~~~~~~~~g~s--~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 347 (392)
+.+.+.+. +.+|.+ +.+.+..+ +.......++.|++.||+|+|+. +.++.++..++.++..+...... ..+.+.
T Consensus 47 sv~s~~L~-~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~v-llig~ll~~iG~ll~ala~~~~i-~~s~~~ 122 (591)
T PTZ00207 47 NLISGAMQ-ARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPI-FVLSMTVFCLGTLLFALTFQEVI-EGSVVR 122 (591)
T ss_pred HHHHHHHH-HHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHhcccc-cCcHHH
Confidence 44444443 334443 45555444 33344566678999999999975 45777777777654322211100 001466
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhhh
Q 016266 348 PLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLIR 387 (392)
Q Consensus 348 ~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~~ 387 (392)
+++..++.|++.+...+.....+.+.||++|+.+.+.++.
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~ 162 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKT 162 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHH
Confidence 7788889999999888888899999999999988887653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=71.08 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=69.9
Q ss_pred cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 283 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 283 ~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
.+..+.....+.++..++.++.|+++||+|||+.+ ..+..+..++.++ ....++ ...+++.-++.|++.+..
T Consensus 50 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~--~~~a~~-----~~~l~~~r~l~Gi~~~~~ 121 (413)
T PRK15403 50 VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL-ITGALIFTLACAA--TLFTTS-----MTQFLIARFIQGTSICFI 121 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH-HHHHHHHHHHHHH--HHHcCC-----HHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999854 4566666655443 234443 466777888899988876
Q ss_pred hhHHHHHHHhhccCCc-cccchhh
Q 016266 363 NTQLSALLGILFKHDT-VTANPTL 385 (392)
Q Consensus 363 ~~~~~a~~~~~~p~~~-~~a~~~~ 385 (392)
.+...+.+.|.+|+++ ..+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAII 145 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777888999998654 4455543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.4e-05 Score=62.47 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=63.9
Q ss_pred HHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHH
Q 016266 291 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL 370 (392)
Q Consensus 291 ~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~ 370 (392)
..++++..+++++.|++.||+|||+.+ ..+.....++.+. ....++ .+...+..++.|++.+...+..++++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~-~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVL-LVGLFIFVLSTAM--FALSSN-----ITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHH-HHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345677899999999999999998854 4555555555332 223332 35677778899999999999999999
Q ss_pred HhhccC-Cccccchhhh
Q 016266 371 GILFKH-DTVTANPTLI 386 (392)
Q Consensus 371 ~~~~p~-~~~~a~~~~~ 386 (392)
.|.+|+ +++.+.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (141)
T TIGR00880 77 ADIYPPEERGVALGLMS 93 (141)
T ss_pred HHHCChhhhhHHHHHHH
Confidence 999985 4566766554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00046 Score=62.58 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=80.1
Q ss_pred hhhcccchhhhcccccc--chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccc
Q 016266 267 FVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG 344 (392)
Q Consensus 267 ~~~~~~~~~~~~~~~g~--s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 344 (392)
|..+.|.+.+.+ .++. ++...+-..-.+|..+| ++.|.+.||.|.+.. +.+|.+...++.....+......+..+
T Consensus 19 Y~Fs~yS~~Lk~-~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l~~~~~i~~~~ 95 (250)
T PF06813_consen 19 YTFSAYSPQLKS-RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWLAVSGRIPSLP 95 (250)
T ss_pred cchhhhhHHHHH-HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHhCccCccc
Confidence 434667766653 3444 45666667777777764 888999999998864 567888888887654433332211012
Q ss_pred hHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhhh
Q 016266 345 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLIR 387 (392)
Q Consensus 345 ~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~~ 387 (392)
.+.+.+..++.|.+.+..++.......+.||++|+.+.+....
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~ 138 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKG 138 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhH
Confidence 4566666677777777777777777778899999999887554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00042 Score=67.00 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=66.7
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
..+.+..+-.+|.++|++++|++.||+|||++. ....+.+.++.+++-++...+++..-+++++..-+++|+|.|+=.|
T Consensus 85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY-G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP 163 (538)
T KOG0252|consen 85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY-GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP 163 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence 456677888899999999999999999999853 3445555555543222222222111145677778899999999999
Q ss_pred HHHHHHHhhccCCccc
Q 016266 365 QLSALLGILFKHDTVT 380 (392)
Q Consensus 365 ~~~a~~~~~~p~~~~~ 380 (392)
...++.+|...+++..
T Consensus 164 lSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 164 LSATIMSESANKKTRG 179 (538)
T ss_pred chHHHhhhhhhhcccc
Confidence 9888888877655544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=67.06 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=76.5
Q ss_pred cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 283 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 283 ~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
.+++|.+.+...+.+.+.+++.|.+.||+|+|.++ .+|...+..+.++ +.+..+ .+.+++.-.+.|++++..
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm-~~Gl~vmf~sTil--Fafg~s-----y~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPM-VAGLFVMFLSTIL--FAFGNS-----YPMLFVARSLQGVGSAFA 176 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccHH-HHHHHHHHHHHHH--HHHcch-----hHHHHHHHHHhhhhHHHH
Confidence 35789999999999999999999999999998754 5788777666543 334433 478889999999999999
Q ss_pred hhHHHHHHHhhccCCc--cccch
Q 016266 363 NTQLSALLGILFKHDT--VTANP 383 (392)
Q Consensus 363 ~~~~~a~~~~~~p~~~--~~a~~ 383 (392)
.+.-.++++|.||++. +.+++
T Consensus 177 ~tsglamlAd~f~~d~er~~vmG 199 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMG 199 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHH
Confidence 9999999999999877 45555
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.01 Score=61.64 Aligned_cols=130 Identities=14% Similarity=0.075 Sum_probs=79.2
Q ss_pred hhhhhHHHHHHh-hchhHHHHHhhhHHHHHHHh-hhc--hh------hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 74 CFSLVASLVVRV-LGSKNALILGTTGYWLFVAA-NLF--PS------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 74 v~~~~~g~l~dr-~G~r~~l~~g~~~~~l~~~~-~~~--~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
+..++.|.++|+ +|+++++.++.+++.+.... .+. ++ ....+..=.+..+|.|+.-++..+...+-.+.
T Consensus 38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~- 116 (654)
T TIGR00926 38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE- 116 (654)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc-
Confidence 556778888875 79999999998887664432 121 11 12233344556667777777777777665421
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC-C-CCCcchhHHHHHHHHHHHHHHHHH
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG-G-STSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~-~-~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
.++++|-.++.+++.+.++|+.++..+...+..+... + ..+|.. .|.+.+++++++.+...
T Consensus 117 ------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~-aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 117 ------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPL-AFGVPAILMILALIVFM 179 (654)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHH-HHHHHHHHHHHHHHHHH
Confidence 0233577788888888899988888776665433210 0 134654 35555666666555543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.082 Score=52.89 Aligned_cols=288 Identities=15% Similarity=0.104 Sum_probs=132.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHH--HHHHH---hhhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGI--LYTSF---TCFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~--~~~~~---~v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
..++.++.+++-++++...|..+-.+.+.+-.+.. |...... .+... .+.-....++.+|+++++++-+....+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F 99 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF 99 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55677778888887777777777666665544322 3222111 11111 122345678999999999886655544
Q ss_pred HHHHHh--h-h-------chhhHHH-HHH---HHHHhh-hHHHHHhhh-hHHHHHHhhh-------hhhhcCCCccchhh
Q 016266 100 WLFVAA--N-L-------FPSWYTM-VPA---SLYLGF-AASIIWVGE-GTYLTAAALS-------HASNHKLHEGTVIG 156 (392)
Q Consensus 100 ~l~~~~--~-~-------~~~~~~l-~~~---r~l~Gi-g~g~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~rg 156 (392)
..+... . + +|+.... ... +-+.|. ..--.|... ....+|.+.. |...-+..+.+|-.
T Consensus 100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK 179 (491)
T PF03219_consen 100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK 179 (491)
T ss_pred HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 333221 1 2 2222110 000 111111 111112211 1111122110 22223334667778
Q ss_pred hhHHHHHHHHHHhhhhhhHhhhhhcc----CCCCCCCCcchhHHHHHHHHHHHHHHHHH---hccCCc---ccc-ccccc
Q 016266 157 SFNGEFWGMFASHQFVGNLITLAVLK----DDKGGSTSGTTLLFIVFLGVITLGTILMC---FLRKEE---DKG-EKETA 225 (392)
Q Consensus 157 ~~~g~~~~~~~~g~~~G~~i~~~~~~----~~~~~~~~wr~~~f~i~~~~~~~~~~~~~---~~~~~~---~~~-~~~~~ 225 (392)
|.++++..+.++|.++++-+...+.+ ....+...|...+-.++.++.+.+.++.. .+.+.. +.. +++..
T Consensus 180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~ 259 (491)
T PF03219_consen 180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKK 259 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhc
Confidence 99999998889888887776655554 11112234543322333333333333322 222110 100 01111
Q ss_pred cccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhh---hcccccc-chhhHHHHHHhHHHHHHH
Q 016266 226 DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI---VTPALGV-SGVGGAMAVYGAFDAICS 301 (392)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~---~~~~~g~-s~~~~~~~~~gi~~~~g~ 301 (392)
+++.+++.+.++.++ -.+++|.+..+.......|......-..+-... ..+.... +-.|-.....|+...+-.
T Consensus 260 ~kk~k~k~s~~es~k---~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~ 336 (491)
T PF03219_consen 260 KKKKKPKMSLKESFK---LLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM 336 (491)
T ss_pred ccccCCCccHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111222333444433 345666666555544434443322211111111 1111111 123444566677777777
Q ss_pred hhhhhhccCCCCchh
Q 016266 302 LAAGRLTTGLPSITF 316 (392)
Q Consensus 302 ~~~G~lsd~~g~r~~ 316 (392)
++++++.+|+|.+..
T Consensus 337 ~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 337 FLSSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHHHHhhHHHH
Confidence 888999999997653
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0027 Score=63.93 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhHhhhccC----CCchhHHHHHHHHHHhhhhhhHHHHHHhhc--hhHHHHHhhhHHHHHHH
Q 016266 31 HILSCAFLLIFLAYGAAQNLETTVNTE----GNLGTISLGILYTSFTCFSLVASLVVRVLG--SKNALILGTTGYWLFVA 104 (392)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G--~r~~l~~g~~~~~l~~~ 104 (392)
+.+.++..+++.++.......+.+..+ +......+++.-.+-.++.++.|.++|+.. ++.+..++.++.++...
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 444555555555554443333333222 222233344444455678899999999999 33344555555455443
Q ss_pred h-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 105 A-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 105 ~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
. ...+++..++...++.|+..|.........+.++. ..++-..++|+.....+++..+|+.+...+...
T Consensus 381 ~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~----------g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 381 FLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV----------GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI 450 (509)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence 3 46788999999999999999988776655566654 567888999999988999999999888755543
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 184 ~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
.+ ++... |...+...+++....+..+
T Consensus 451 tg----~Y~~~-f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 451 TG----NYDHA-FYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cC----Ceeee-hhhcChHHHHHHHHHHHhH
Confidence 32 24333 4444455455554444333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00053 Score=69.47 Aligned_cols=92 Identities=13% Similarity=-0.027 Sum_probs=72.3
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
......+++-+|.++|++++|.++||+|||+. +..+.++.+++-+. ..+.++ ++.+++.-++-|++.+...+
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~-~~~~~~~~~i~~~~--~a~a~~-----~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPV-LLVSLLLFIIFGIL--TAFAPN-----YWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHH-HHHHHHHHHHHHHH--HHHhCc-----HHHHHHHHHHHHhhccchhH
Confidence 45566788889999999999999999999875 45677767666432 345665 57889999999999999999
Q ss_pred HHHHHHHhhccC-Cccccchh
Q 016266 365 QLSALLGILFKH-DTVTANPT 384 (392)
Q Consensus 365 ~~~a~~~~~~p~-~~~~a~~~ 384 (392)
....++.|.+++ +|..+...
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred HhHhhheeecCcchhhHHHHH
Confidence 999999999964 44444444
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=49.08 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=36.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHHHHhh--hhhhHHHHHH-----hhchhHHHHHh
Q 016266 24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTC--FSLVASLVVR-----VLGSKNALILG 95 (392)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~v--~~~~~g~l~d-----r~G~r~~l~~g 95 (392)
++.++++..+....+..=..+.... ..+.+-...+.+..+.+++-..+.- ..+.+.|++| |+||||.+++=
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 3455565554433333222222222 2333333445555555555443322 2467888988 99999997543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00088 Score=66.35 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=70.7
Q ss_pred hHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHH
Q 016266 287 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL 366 (392)
Q Consensus 287 ~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~ 366 (392)
+.+.+++-+|+++|+++.|.+.||+|||+.++ +..++..++.++..+....+. +..+++.-++.|+..+......
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~-~~~~l~~~~~~~~~~s~~~~~----~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALL-LSNLLAVLAALLMGLSKSAPS----FEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhHHHHHHH
Confidence 44678888999999999999999999997654 455444444333333343332 3577888899999999999999
Q ss_pred HHHHHhhccCCccccchhh
Q 016266 367 SALLGILFKHDTVTANPTL 385 (392)
Q Consensus 367 ~a~~~~~~p~~~~~a~~~~ 385 (392)
+-+++|+.|++-..+.|..
T Consensus 138 pmyl~E~sP~~~RG~~g~~ 156 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTL 156 (485)
T ss_pred HHHHhhcChhhhccHHHHH
Confidence 9999999998776666543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00047 Score=69.79 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=72.0
Q ss_pred hhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhH
Q 016266 286 VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQ 365 (392)
Q Consensus 286 ~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~ 365 (392)
.+.+.+...+++.+|+++.|+++|++|||+.+ .++.+...++.++ ....++ ...++++-++.|+|.|.....
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l-~~~~~~~~iG~ii--~~~a~~-----~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTL-LLAVVLFLIGAII--IALAPS-----WYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHH--HHHhhh-----HHHHHHHHHHhccchhhhhhc
Confidence 37888999999999999999999999999765 4677777777554 345554 478899999999999999999
Q ss_pred HHHHHHhhccCCccc
Q 016266 366 LSALLGILFKHDTVT 380 (392)
Q Consensus 366 ~~a~~~~~~p~~~~~ 380 (392)
.+.+++|+.|++...
T Consensus 163 ~piy~sEiap~~~RG 177 (513)
T KOG0254|consen 163 APVYISEIAPAHIRG 177 (513)
T ss_pred chhhHhhcCChhhhH
Confidence 999999999974443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.018 Score=54.46 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=65.1
Q ss_pred HHHHHHHhhhhhhHHHHHHhhc-hhHHHHHhhhHHHHHHHhh-hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLG-SKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G-~r~~l~~g~~~~~l~~~~~-~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
++........++..|.+++|.. +|+..+....++.+..+.. +.|....++ +-++.|+|.|..++.....+...++
T Consensus 250 sl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l-w~~llG~G~G~~F~laL~li~~rs~-- 326 (395)
T COG2807 250 SLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL-WALLLGLGQGGAFPLALTLILLRSS-- 326 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHhCccchHHHHHHHHHHhhcC--
Confidence 3444445566778888888655 5555555555555555543 444433333 3599999999999988888777653
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhcc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK 182 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~ 182 (392)
++++-++-.|+.+...-+=..+||.+.+.+..
T Consensus 327 -------~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 327 -------DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred -------ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 55666666665543332223446655555543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00083 Score=63.55 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=66.1
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
..|++-+.++++..+.++.+|+++||.|||. ++.++.+..++... .|..+.. +..+.+.-++.|+..+- .+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-vll~c~~~va~s~l----l~~~S~~---F~afv~aR~l~Gi~kgn-l~ 139 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKP-VLLACLIGVALSYL----LWALSRN---FAAFVLARFLGGIFKGN-LS 139 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-HHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHhhhhccCc-hH
Confidence 5788889999999999999999999999875 55667766666533 2433221 44455557889998775 45
Q ss_pred HHHHHHHhhcc-CCccccchh
Q 016266 365 QLSALLGILFK-HDTVTANPT 384 (392)
Q Consensus 365 ~~~a~~~~~~p-~~~~~a~~~ 384 (392)
..-++++|+++ ++++.+++.
T Consensus 140 v~rAiisdV~sek~r~l~ms~ 160 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSL 160 (451)
T ss_pred HHHHHHHhhcChhhccceeee
Confidence 77899999996 455556553
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=65.08 Aligned_cols=98 Identities=27% Similarity=0.348 Sum_probs=68.5
Q ss_pred cccch--hhHHHHHHhHHHHHHHhhhhhhccCC-CCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhh
Q 016266 281 LGVSG--VGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357 (392)
Q Consensus 281 ~g~s~--~~~~~~~~gi~~~~g~~~~G~lsd~~-g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~ 357 (392)
+|.++ +.-+...|+.-.=+...++|+++||+ |+||.+ ..|+++++++-++ +..++.. +...+++..++.++
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI-~lGail~~iGh~~--L~~~~~~---~~~gl~i~L~~I~i 129 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI-VLGAILMAIGHLV--LAISSVS---GPGGLYIGLALIIV 129 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHH--Hhccccc---cccHHHHHHHHHHh
Confidence 44543 33344555544455567889999995 888875 4788888888654 2344311 13578888899999
Q ss_pred hhhhhhhHHHHHHHhhccCC---ccccchh
Q 016266 358 GDGVLNTQLSALLGILFKHD---TVTANPT 384 (392)
Q Consensus 358 ~~~~~~~~~~a~~~~~~p~~---~~~a~~~ 384 (392)
|+|...+...++++|+||++ |..+++.
T Consensus 130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~ 159 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKDDPRRDGGFTL 159 (498)
T ss_pred ccccccccHHHHHHHhcCCCCcccCCCccE
Confidence 99999999999999999743 3445553
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=64.42 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=67.4
Q ss_pred cccccc-hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhh
Q 016266 279 PALGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI 357 (392)
Q Consensus 279 ~~~g~s-~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~ 357 (392)
.++|.+ ...++.....++..++.++.|+++|.+|||. +++.+.++..++.+. ....++ ...++....+.|+
T Consensus 72 ~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-~~i~g~~l~vvG~Iv--~atA~~-----~~~~iag~~l~Gv 143 (599)
T PF06609_consen 72 ADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-FFIIGSLLGVVGSIV--CATAQN-----MNTFIAGMVLYGV 143 (599)
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-HHHHHHHHHHhHHHH--hhcCCc-----HHHHHHHHHHHHH
Confidence 345654 4567777788889999999999999999886 556788888888653 234444 4578888899999
Q ss_pred hhhhhhhHHHHHHHhhccCCc
Q 016266 358 GDGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 358 ~~~~~~~~~~a~~~~~~p~~~ 378 (392)
+.+... .....++|+.|++.
T Consensus 144 gaG~~~-~~~~~isEl~p~k~ 163 (599)
T PF06609_consen 144 GAGVQE-LAALAISELVPNKW 163 (599)
T ss_pred hhHHHH-HHHHHHHHhcccch
Confidence 966554 55667899998543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.064 Score=52.00 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=50.8
Q ss_pred hhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCcc
Q 016266 74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG 152 (392)
Q Consensus 74 v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (392)
+..+.+++..+|...+.=......+..+..+. .++++.+.=++.=++.+++.|..-..-..+.. +| +
T Consensus 74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~----~y-------~- 141 (402)
T PF02487_consen 74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH----FY-------G- 141 (402)
T ss_pred HHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH----hc-------C-
Confidence 34577889999887443333333344443333 35567665555667777777766555444322 11 2
Q ss_pred chhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 153 TVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 153 ~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
+ ...+-+.++.+.+.++|...-..+.
T Consensus 142 -~--~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 142 -K--SSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred -c--cccccccCCcChhhHHHHHHHHHHH
Confidence 1 2345555556666677766544443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=55.54 Aligned_cols=86 Identities=15% Similarity=0.001 Sum_probs=64.2
Q ss_pred ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhh
Q 016266 280 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 359 (392)
Q Consensus 280 ~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~ 359 (392)
+++.++++.+....-..+++...+.|.+.||+|||+..+ +-++++.++.+ ....++ +..+++.-++-|++.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl-~~cily~~scl---~k~~~~-----~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACL-LFCILYSLSCL---TKHSSN-----YPVLLLGRVLGGIAT 135 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH-HHHHHHHHHHH---HHhccc-----cHHHHHHHHHHHHHH
Confidence 445567888877777788888999999999999998765 45666776633 233343 478888889999999
Q ss_pred hhhhhHHHHHHHhhc
Q 016266 360 GVLNTQLSALLGILF 374 (392)
Q Consensus 360 ~~~~~~~~a~~~~~~ 374 (392)
+...+..-++.....
T Consensus 136 SLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 136 SLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887777665444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=47.46 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=37.1
Q ss_pred hhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHH
Q 016266 276 IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG 320 (392)
Q Consensus 276 ~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~ 320 (392)
+.+.+++..++|.+.++..+...++++++|++.||.++++.++..
T Consensus 27 ~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 27 LKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 334456667899999999999999999999999999998865433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.039 Score=53.10 Aligned_cols=95 Identities=24% Similarity=0.275 Sum_probs=70.5
Q ss_pred hhHHHHH-HhhchhHHHHHhhhHHHHHHH----hhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCc
Q 016266 77 LVASLVV-RVLGSKNALILGTTGYWLFVA----ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE 151 (392)
Q Consensus 77 ~~~g~l~-dr~G~r~~l~~g~~~~~l~~~----~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (392)
...|.+. .|.++|+.-.+|+.+..++.. +....+.+.+...=++.|+|.|...++..+...+.. .
T Consensus 262 ~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt----------~ 331 (403)
T PF03209_consen 262 LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLT----------S 331 (403)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----------C
Confidence 4456554 488888887777765443322 223456667777789999999999888888777775 5
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 152 GTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 152 ~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
+++.|.++|.+.+....+..+|.+++..+.
T Consensus 332 ~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 332 AGRAGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999888888888877654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0041 Score=59.40 Aligned_cols=104 Identities=22% Similarity=0.093 Sum_probs=78.2
Q ss_pred cccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhh
Q 016266 281 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 360 (392)
Q Consensus 281 ~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~ 360 (392)
++..+++.+...+-.+-.++++..|++.||+|.|+.+ .+|+.+++++..+ .|+-.. .-.+..+++..++.|.|.+
T Consensus 45 ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi-~lgL~l~avg~~l---F~pAa~-~~~y~~FL~~lFila~Gi~ 119 (422)
T COG0738 45 LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI-VLGLLLYAVGAAL---FWPAAS-SKSYGFFLVALFILASGIG 119 (422)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH-HHHHHHHHHHHHH---Hhhhhh-hhhHHHHHHHHHHHHhhhH
Confidence 4455788888888888999999999999999998875 5789889888553 342211 0014567888899999999
Q ss_pred hhhhHHHHHHHhhccCCccccchhhhhhhh
Q 016266 361 VLNTQLSALLGILFKHDTVTANPTLIRQIF 390 (392)
Q Consensus 361 ~~~~~~~a~~~~~~p~~~~~a~~~~~~~~~ 390 (392)
..++..+.+++.+.|++ ..+.-+...|.|
T Consensus 120 ~LetaaNp~v~~lg~~~-~a~~rlnl~q~f 148 (422)
T COG0738 120 LLETAANPYVTLLGKPE-SAAFRLNLAQAF 148 (422)
T ss_pred HHHhccchHHHHhCCch-hHHHHHHHHHHh
Confidence 99999999999999854 444445555544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0032 Score=62.09 Aligned_cols=97 Identities=12% Similarity=-0.018 Sum_probs=75.2
Q ss_pred cch-hhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhh
Q 016266 283 VSG-VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 361 (392)
Q Consensus 283 ~s~-~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~ 361 (392)
..+ .|.+...+..+.++..++.|+++||+|.|+.+ .++.+...+..++ ..+..+ ...+.+.-+++|++.+.
T Consensus 60 ~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL-~l~~l~Wsl~t~L--~~fa~S-----l~~L~i~R~llGvaEA~ 131 (511)
T TIGR00806 60 EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL-VLQALSFVCVWLL--LLLGTS-----VWHMQLMEVFYSVTMAA 131 (511)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 346 78899999999999999999999999988754 4566555555433 234433 46788888999999999
Q ss_pred hhhHHHHHHHhhccC-Cccccchhhhhh
Q 016266 362 LNTQLSALLGILFKH-DTVTANPTLIRQ 388 (392)
Q Consensus 362 ~~~~~~a~~~~~~p~-~~~~a~~~~~~~ 388 (392)
.. ....++...+|+ +|+.+.+..+.-
T Consensus 132 ~~-A~~syI~~WfP~kER~ratsi~~sg 158 (511)
T TIGR00806 132 RI-AYSSYIFSLVPPSRYQRAAAYSRAA 158 (511)
T ss_pred HH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99 999999999984 567788776653
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0023 Score=66.36 Aligned_cols=104 Identities=16% Similarity=0.023 Sum_probs=74.3
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhcc--c----c-----------------
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY--S----V----------------- 338 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~--~----~----------------- 338 (392)
+.++.|.+.+.+.++.+++.++.|++.||.+||+.+ .+|.++..++.++..+.. . .
T Consensus 66 ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i-~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~ 144 (633)
T TIGR00805 66 STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI-GIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFL 144 (633)
T ss_pred CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE-EecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccc
Confidence 345688889999999999999999999999998854 467777766654432211 0 0
Q ss_pred ---C-----------------CC-ccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhh
Q 016266 339 ---T-----------------SG-VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLI 386 (392)
Q Consensus 339 ---~-----------------~~-~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~ 386 (392)
+ .+ ...+..+++.-++.|++.+...+...+++.|.+|++ ++.+.+.+.
T Consensus 145 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~ 214 (633)
T TIGR00805 145 CMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE 214 (633)
T ss_pred ccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence 0 00 001245667889999999999999999999999754 455666543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00019 Score=71.03 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=68.2
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCC-CccchHHHHHHHHHHhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS-GVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
+.+...+...++..+|+++.|+++||+|||+.+ .++.++..++.++ ....+.. + ++.+.+.-++.|++.|+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~-~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL-IISALLMIIGSIL--IAFAPSYNN---FWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccc-ccccccccccccc--ccccccccc---ccccccccccccccccccc
Confidence 356677888899999999999999999999765 4566666666443 3444411 1 3577788899999999999
Q ss_pred hHHHHHHHhhccCCcc
Q 016266 364 TQLSALLGILFKHDTV 379 (392)
Q Consensus 364 ~~~~a~~~~~~p~~~~ 379 (392)
+..+.++.|..|++..
T Consensus 121 ~~~~~~~~E~~~~~~R 136 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHR 136 (451)
T ss_pred cccccccccccccccc
Confidence 9999999999976443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.19 Score=49.15 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHhhhhhhccCCCCchhh
Q 016266 290 MAVYGAFDAICSLAAGRLTTGLPSITFI 317 (392)
Q Consensus 290 ~~~~gi~~~~g~~~~G~lsd~~g~r~~~ 317 (392)
+.++.+...+-+...-+++||+|.|+..
T Consensus 338 L~ins~~lgi~S~~~~~l~~~~g~r~~y 365 (498)
T KOG0637|consen 338 LMLNSIVLGIYSLLVEKLSRKFGTRKRY 365 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcceEE
Confidence 5677777888899999999999955543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.3 Score=46.13 Aligned_cols=286 Identities=16% Similarity=0.119 Sum_probs=144.7
Q ss_pred hhHHHHHHhhchhHHHHHhhhHHH-HHHHhhhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchh
Q 016266 77 LVASLVVRVLGSKNALILGTTGYW-LFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI 155 (392)
Q Consensus 77 ~~~g~l~dr~G~r~~l~~g~~~~~-l~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 155 (392)
++.=.+.|-.-.|+++++-.+.+. ......+.++...+=+.-+.-|...+. ..+|-+.+.. .++|+++
T Consensus 60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa----EIAYysYIYs-------~Vd~~~Y 128 (433)
T KOG3810|consen 60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA----EIAYYSYIYS-------KVDPEMY 128 (433)
T ss_pred HHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH----HHhhhheeee-------ecCHHHH
Confidence 334457899999999877765432 333333455544433344555654433 2333333322 2477788
Q ss_pred hhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccc----ccccc----ccc
Q 016266 156 GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GEKET----ADA 227 (392)
Q Consensus 156 g~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~ 227 (392)
-++.|.-.++.-.|-..|..++-.+..... .+.+.. =.+-.....++.+.++++|++++. ..+++ +.+
T Consensus 129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~---~sy~~L-N~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e 204 (433)
T KOG3810|consen 129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLET---LSYTTL-NYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLE 204 (433)
T ss_pred HHHHHHhHHHHHHHhHHHhHHHHHHhhhcc---cchhhh-chhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccch
Confidence 888888777777776777666655543211 112221 123333444556666777776531 11110 000
Q ss_pred cchhhhhHH----HH----HHHHHHhhccchhHHHHH--HHHhhhHHhhhhhcccchhhhcccccc--c-hhhHHHHHHh
Q 016266 228 SVNFYSYLV----SL----SKSITTLLADVRMLLIIP--LFAYSGLQQAFVWAEFTKEIVTPALGV--S-GVGGAMAVYG 294 (392)
Q Consensus 228 ~~~~~~~~~----~~----~~~~~~~~~~~~~~~l~~--~~~~~g~~~~~~~~~~~~~~~~~~~g~--s-~~~~~~~~~g 294 (392)
+..++.+.. .. .++.....+||+.+...+ .+.-+|+.+.. .|...+-.+-... + .-|.+=++.-
T Consensus 205 ~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~---nY~Q~LW~~~~~~~~~vyNG~veAv~t 281 (433)
T KOG3810|consen 205 EMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVT---NYTQILWKEVAPNPANVYNGAVEAVST 281 (433)
T ss_pred hcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHH---HHHHHHHHhhCCCchhhhcCHHHHHHH
Confidence 111111111 11 223444557777654332 22224443221 1111110000011 1 1233445555
Q ss_pred HHHHHHHhhhhhhccCCCCc-hhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 016266 295 AFDAICSLAAGRLTTGLPSI-TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 373 (392)
Q Consensus 295 i~~~~g~~~~G~lsd~~g~r-~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~ 373 (392)
+.++++.+..|.+.-...|. ..++.++....+..+ +++.++++ .++.++..+++........|.....++.-
T Consensus 282 lLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agll--f~m~~t~~-----Iw~~Ya~yvlfr~~y~l~itiA~~~iA~n 354 (433)
T KOG3810|consen 282 LLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLL--FIMAQTQH-----IWVCYAGYVLFRVIYQLTITIATFQIARN 354 (433)
T ss_pred HHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhh--hhhhcccc-----eehhhhhHHHHHhhHhhhhhHHHHHHHHh
Confidence 66788888999996555544 444445555554432 23455555 47889999999888777777776666655
Q ss_pred ccC-Cccccchhhhh
Q 016266 374 FKH-DTVTANPTLIR 387 (392)
Q Consensus 374 ~p~-~~~~a~~~~~~ 387 (392)
..+ .-+-.+|.+.+
T Consensus 355 L~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 355 LSSELFGLVFGINTF 369 (433)
T ss_pred hhhhhheeeeehHHH
Confidence 543 33666665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.01 Score=59.00 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=71.5
Q ss_pred cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhh
Q 016266 283 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 283 ~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~ 362 (392)
.++-+++...+..|.+++.+..|++.||+|.|+++. .+.++.+++.++. ++..+.. ...++++-++.|++.+..
T Consensus 72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~-~~~~~sa~~t~l~--P~aa~~~---~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFF-ISGLISALLTLLT--PLAASIG---FYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHH-HHHHHHHHHHHHH--HHHHHhc---chhhHHHHHHhHHHHhHH
Confidence 346789999999999999999999999999998654 5555555554432 3332221 356788889999999999
Q ss_pred hhHHHHHHHhhccC-Cccccch
Q 016266 363 NTQLSALLGILFKH-DTVTANP 383 (392)
Q Consensus 363 ~~~~~a~~~~~~p~-~~~~a~~ 383 (392)
.|....++.+..|. +|+...+
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~a 167 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIA 167 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHH
Confidence 99999999999974 4444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.097 Score=38.18 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHH----HHhhhhhhHHHHHHhhchhHHHHHhhhH
Q 016266 35 CAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT----SFTCFSLVASLVVRVLGSKNALILGTTG 98 (392)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~----~~~v~~~~~g~l~dr~G~r~~l~~g~~~ 98 (392)
+-.++.|.+........+....+.+.+....++..+ +-.+++++.|.++||+|+++.......+
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334444544444433333333344555544444433 3456788999999999999998876644
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.7 Score=40.52 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=56.1
Q ss_pred hhccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHH-HhccccCCC--ccchHHHHHHH
Q 016266 276 IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSG--VLGTLYPLIMA 352 (392)
Q Consensus 276 ~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~-~~~~~~~~~--~~~~~~~~i~~ 352 (392)
..+++++.+.+|..-..-.+.++.|.++..++.+|+|..|.=+ .+......++.+. ...|.+.++ ......++...
T Consensus 285 l~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~-~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi 363 (432)
T PF06963_consen 285 LKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGL-WSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGI 363 (432)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 3345555567788878888888999999999999999766433 4555444443222 123444432 11111222222
Q ss_pred HHHhhhhhhhhhHHHHHHHhhccCCccc
Q 016266 353 ALLGIGDGVLNTQLSALLGILFKHDTVT 380 (392)
Q Consensus 353 ~l~G~~~~~~~~~~~a~~~~~~p~~~~~ 380 (392)
++-=+|--++--....++-|..|+++..
T Consensus 364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg 391 (432)
T PF06963_consen 364 ALSRIGLWSFDLAVTQIMQENVPESERG 391 (432)
T ss_pred HHHHHHHHhhhHHHHHhhcccCCHHHhh
Confidence 2222222233334455666667754433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.15 Score=46.07 Aligned_cols=86 Identities=12% Similarity=-0.034 Sum_probs=44.7
Q ss_pred HHHHHhHHHHHHHhhhhhhccCCCCchhhHH----HHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 289 AMAVYGAFDAICSLAAGRLTTGLPSITFIVS----GGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 289 ~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~----~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
...++-.+..+|....|..++..=+||+.+. .+.++..++.++ .....+++. .+.+.+++..++.|++.-+.++
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~-~~~~g~~~~-~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVV-VYFVGPGNA-AGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhCcchH-HHHHHHHHHHHHHHHHHHhhhH
Confidence 3455555566777788888776555665442 223333333222 112333321 1135677777888887766555
Q ss_pred HHHHHHHhhccCC
Q 016266 365 QLSALLGILFKHD 377 (392)
Q Consensus 365 ~~~a~~~~~~p~~ 377 (392)
.+- .+...++++
T Consensus 224 ViL-~lPhEyK~~ 235 (267)
T PF07672_consen 224 VIL-NLPHEYKGY 235 (267)
T ss_pred HHh-cChhhhcCC
Confidence 432 233445433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.17 Score=48.95 Aligned_cols=110 Identities=12% Similarity=0.009 Sum_probs=73.2
Q ss_pred HHHHHhhhHHHHHHHh----hhchh------hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhH
Q 016266 90 NALILGTTGYWLFVAA----NLFPS------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN 159 (392)
Q Consensus 90 ~~l~~g~~~~~l~~~~----~~~~~------~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 159 (392)
|++.+|.+++.++... ...+. ...++++=.+.++|.|+.-+....+.++-.++. .+++|...+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~-------~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED-------DDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT-------TTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc-------chhhhhhhH
Confidence 4566666666554433 11112 246677778899999999999888888876431 256788889
Q ss_pred HHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 160 GEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 160 g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
.+++.+.+.|..++..+...+-++ .+|.. .|.+..+..+++.+.++.
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~-----~~~~~-~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQN-----YGWFL-GFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHC-----S-HHH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHhhcccchhhccc-----cchhh-hhhHHHHHHHHHHHHHHh
Confidence 999999999999988777666543 35644 366656666666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.61 Score=45.35 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=57.4
Q ss_pred hchhHHHHHhhhHHH---HHHH--h-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhH
Q 016266 86 LGSKNALILGTTGYW---LFVA--A-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN 159 (392)
Q Consensus 86 ~G~r~~l~~g~~~~~---l~~~--~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 159 (392)
+--|+..+.+.+-.. +... . .+.|+.+.+++.-+..|+-.|..++.....+.+- .++++|..++
T Consensus 304 ~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~----------~~~~~REFsl 373 (402)
T PF02487_consen 304 FRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEE----------VPPEDREFSL 373 (402)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc----------CCHHHHHHHH
Confidence 334666666654322 1111 1 1457777766677888998888877655444332 3778999999
Q ss_pred HHHHHHHHHhhhhhhHhhhhh
Q 016266 160 GEFWGMFASHQFVGNLITLAV 180 (392)
Q Consensus 160 g~~~~~~~~g~~~G~~i~~~~ 180 (392)
|....+.+.|..++++++..+
T Consensus 374 g~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 374 GAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999988898888888877654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.78 E-value=4.7 Score=39.91 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHHHHHhHHHHHHHhhhhhhccCCCCc-hhhHHHHHHHHHHHHHHH-HhccccCCC---ccc-hHHHHHHHHHHhhhhhh
Q 016266 288 GAMAVYGAFDAICSLAAGRLTTGLPSI-TFIVSGGAIAQVVVFLWI-LINYSVTSG---VLG-TLYPLIMAALLGIGDGV 361 (392)
Q Consensus 288 ~~~~~~gi~~~~g~~~~G~lsd~~g~r-~~~~~~g~~~~~i~~~~~-~~~~~~~~~---~~~-~~~~~i~~~l~G~~~~~ 361 (392)
.+...++++..+|+.+..+..- -++| +.+. +..++-.+...++ ++...+..+ .++ -+..++..+++|+.+|-
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~-i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLP-ILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeEe-eCCCccchH-HHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4568899999999997765421 1112 1222 3333333332221 122221100 111 24566778899999998
Q ss_pred hhhHHHHHHHhhccC
Q 016266 362 LNTQLSALLGILFKH 376 (392)
Q Consensus 362 ~~~~~~a~~~~~~p~ 376 (392)
..+....+..+..++
T Consensus 389 ~~s~~m~~~p~~v~~ 403 (437)
T TIGR00939 389 LGSLSMCLAPRQVDP 403 (437)
T ss_pred HHHHHHHhcCCCCCH
Confidence 888877777776653
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.8 Score=39.77 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=58.5
Q ss_pred hhHHHHH-HhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHH-HhccccCCCcc-chHHHHHHHHHHhhhhhhh
Q 016266 286 VGGAMAV-YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVL-GTLYPLIMAALLGIGDGVL 362 (392)
Q Consensus 286 ~~~~~~~-~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~-~~~~~~~~~~~-~~~~~~i~~~l~G~~~~~~ 362 (392)
....... +++...+|++...++.++ ++|+.. +..++-.+..-++ ++.++|.+... +.++.+....++|+.+|=.
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~--i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYl 360 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWP-DPRKLT--IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYL 360 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCC-CCceeh--HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchH
Confidence 3444555 999999999999998886 445432 2232222221111 12332221111 1367788888999999988
Q ss_pred hhHHHHHHHhhccCCccccchhh
Q 016266 363 NTQLSALLGILFKHDTVTANPTL 385 (392)
Q Consensus 363 ~~~~~a~~~~~~p~~~~~a~~~~ 385 (392)
.+....+..+-+|++..++-|++
T Consensus 361 tsl~m~~aPk~v~~~e~e~aG~~ 383 (406)
T KOG1479|consen 361 TSLIMMYAPKQVKPSEKEAAGNL 383 (406)
T ss_pred hhheehhcCCCCChHHHHHHHHH
Confidence 88888888877765555555543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.1 Score=50.94 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=75.1
Q ss_pred hhhHHhhhh--hcccchhhhccccccchhhHHHHHHhHHHHHHHhhhhhhccC----CCCchhhHHHHHHHHHHHHHHHH
Q 016266 260 YSGLQQAFV--WAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWIL 333 (392)
Q Consensus 260 ~~g~~~~~~--~~~~~~~~~~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~----~g~r~~~~~~g~~~~~i~~~~~~ 333 (392)
..|.+.... .+..+|+...-+..-+..+.+-....+...+.+++.|..||| +||||+.+..+.++.++++.++
T Consensus 41 a~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Li- 119 (498)
T KOG0637|consen 41 AAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLI- 119 (498)
T ss_pred HHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhh-
Confidence 345543332 233445544323333455665555666778889999999997 6899998888877777775432
Q ss_pred hccccC--------CC--c--cchHHHHHHHHHHhhhhhhhhhHHHHHHHhhc-cCCccc-cchhhh
Q 016266 334 INYSVT--------SG--V--LGTLYPLIMAALLGIGDGVLNTQLSALLGILF-KHDTVT-ANPTLI 386 (392)
Q Consensus 334 ~~~~~~--------~~--~--~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~-p~~~~~-a~~~~~ 386 (392)
.+..+ .. . ......++..-+.=++.-..+...-+++.|+. ++++.+ |.+.+-
T Consensus 120 -g~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 120 -GYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred -hhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 33221 10 0 00122334444555566677888999999998 566666 777654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.35 Score=43.65 Aligned_cols=95 Identities=25% Similarity=0.186 Sum_probs=63.2
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhh
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~ 364 (392)
..+.....+.+...++.++.|+++||.|||+. +..+.....++.+. ....++.. .+...+.....|++.+...+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-LIIGLLLFLLGTLL--LALAPNVG---LALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHH-HHHHHHHHHHHHHH--HHhCccch---HHHHHHHHHHHHhhhHHHHH
Confidence 46777788888888888999999999988854 33444322222111 12222211 34566666668999999999
Q ss_pred HHHHHHHhhccC--Cccccchhh
Q 016266 365 QLSALLGILFKH--DTVTANPTL 385 (392)
Q Consensus 365 ~~~a~~~~~~p~--~~~~a~~~~ 385 (392)
...+++.+.+|+ ++....+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~ 136 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLV 136 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHH
Confidence 999999999996 444444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.28 Score=48.75 Aligned_cols=95 Identities=20% Similarity=0.102 Sum_probs=67.4
Q ss_pred chhhHHHHHHhHHHHHHHhhhhhhccCCCC-chhhHHHHHHHHHHHHHHH-HhccccCCCccchHHHHHHHHHHhhhhhh
Q 016266 284 SGVGGAMAVYGAFDAICSLAAGRLTTGLPS-ITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLGIGDGV 361 (392)
Q Consensus 284 s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~-r~~~~~~g~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~~l~G~~~~~ 361 (392)
+-.|.+.+...++.+++++.+|+-+.|.++ |+++ +.|.+..+++.++= .+.+.++.. -++++++-++.|+|.+.
T Consensus 71 ~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl-i~s~ii~~~g~llY~~l~~~~~~~---~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 71 TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL-IVSFLIAIIGNLLYLALAYVPNGV---KYLMLVARILTGVGVGN 146 (488)
T ss_pred chhhHHHHHHHHHHHhcchhhcccccccCCcccCH-HHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHcCcCccc
Confidence 456889999999999999999999999885 5554 57887777775431 122334321 36788888999999765
Q ss_pred hhhHHHHHHHhhc-cCCccccch
Q 016266 362 LNTQLSALLGILF-KHDTVTANP 383 (392)
Q Consensus 362 ~~~~~~a~~~~~~-p~~~~~a~~ 383 (392)
.+.+=+++++.- +++|..|++
T Consensus 147 -~a~lR~Y~a~~s~~~dR~rA~a 168 (488)
T KOG2325|consen 147 -FAVLRAYIADASTVEDRPRAFA 168 (488)
T ss_pred -HHHHHHHHHhccCccchHHHHH
Confidence 456677777743 556655554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=5.4 Score=40.48 Aligned_cols=109 Identities=11% Similarity=-0.013 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhh-HHHHHHH--hh----hchhh-HHHHHHHHHHhhhHHHHHhhhh
Q 016266 62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTT-GYWLFVA--AN----LFPSW-YTMVPASLYLGFAASIIWVGEG 133 (392)
Q Consensus 62 ~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~-~~~l~~~--~~----~~~~~-~~l~~~r~l~Gig~g~~~~~~~ 133 (392)
...++++...+++++..++++.++.-++....-..+ +++.... .. ..... ..++..-++.|+-.|...|...
T Consensus 53 ~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~ 132 (521)
T PRK03612 53 STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLM 132 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777778888877777644333333221111 1111100 00 10111 1122223344554555444433
Q ss_pred HHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhc
Q 016266 134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL 181 (392)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~ 181 (392)
....+. ..++-|...|-.++...+|.++|.++..++.
T Consensus 133 ~~~~~~-----------~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 133 RILQRI-----------RDQHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHhc-----------cccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 322221 1123466677777788899999988765544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.32 Score=48.85 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=69.2
Q ss_pred chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhh
Q 016266 284 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 284 s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
.+.+.+.+++.++.+++.+.+|.|.||++-.+.+...+......++ +-.+..+ .+.+++.-++.|+..+...
T Consensus 81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~---~~~~~~s-----~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGF---LTAAVHS-----FPGLIALRFLLGLFESGGW 152 (495)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHH---HHHHHhh-----hHHHHHHHHHHHHHhcccc
Confidence 4677888999999999999999999999955433322222222221 1223333 4678888899999999999
Q ss_pred hHHHHHHHhhccC-Cccccchhhh
Q 016266 364 TQLSALLGILFKH-DTVTANPTLI 386 (392)
Q Consensus 364 ~~~~a~~~~~~p~-~~~~a~~~~~ 386 (392)
|....+++..|++ +++.-++.+.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~ 176 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWY 176 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHH
Confidence 9999999999964 5566777654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.52 Score=47.14 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=89.2
Q ss_pred HHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhccccc-cc-hhhHHHHHHhHHHHHHHhhhhhhccCCCCchh
Q 016266 239 SKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITF 316 (392)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g-~s-~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~ 316 (392)
+.+..+++.+++..+++....+.|...++..+.+ .++.++.+ .+ ..|.+-++.-.+.++.-++.+++.+|+|+-+.
T Consensus 361 ~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFL--fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v 438 (618)
T KOG3762|consen 361 LADVGKVFASPHILLFFFVAVVMGAGVGLVFTFL--FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV 438 (618)
T ss_pred HHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHH--HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce
Confidence 3455578888887665555455565554443321 12223333 22 23555566666788888899999999998875
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc-cccchhh
Q 016266 317 IVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-VTANPTL 385 (392)
Q Consensus 317 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~-~~a~~~~ 385 (392)
+ ..|+....+=+. +++..+| +|..+..-++.|+..+......-+++....|++. +++.+..
T Consensus 439 ~-~lgLa~~~~Rf~--~~S~L~n-----~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~ 500 (618)
T KOG3762|consen 439 M-YLGLACNVGRFL--YYSYLQN-----PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLL 500 (618)
T ss_pred e-eehhhHHHHHHH--HHHHhcC-----chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHH
Confidence 4 455555544432 3455565 3777888899999999999999999999997544 5555543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.2 Score=42.27 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=65.2
Q ss_pred hhHHHHHHhhchhHHHHHhhhHHHHHHHhh--hc---------hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhh
Q 016266 77 LVASLVVRVLGSKNALILGTTGYWLFVAAN--LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145 (392)
Q Consensus 77 ~~~g~l~dr~G~r~~l~~g~~~~~l~~~~~--~~---------~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~ 145 (392)
........+..-|+++....++..+..+.. +. ++.+..+.-.++..+-....+.......+++.
T Consensus 273 ~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lc----- 347 (433)
T PF03092_consen 273 LLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLC----- 347 (433)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 334455556677777777776655544431 11 12222233446666666666677677778887
Q ss_pred hcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCC
Q 016266 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD 184 (392)
Q Consensus 146 ~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~ 184 (392)
|+...|..+++..+..++|..++..++..+.+..
T Consensus 348 -----P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 348 -----PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888999999999999999998888887776544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.1 Score=42.68 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=67.3
Q ss_pred Hhhhhhh-HHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 72 FTCFSLV-ASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 72 ~~v~~~~-~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
..+++++ .+.+...+|-|++..+|+..-.+.... .++++.+.++..+++.++.. ...++..+..+.+.
T Consensus 290 ~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-~~~pa~~s~~s~~v--------- 359 (463)
T KOG2816|consen 290 GIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-IVFPAIRAFASILV--------- 359 (463)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-chhHHHHhHHHhhc---------
Confidence 3456655 458899999999888887665554443 36777777776766666544 34455566555554
Q ss_pred CccchhhhhHHHHHHHHHHhhhhhhHhhh
Q 016266 150 HEGTVIGSFNGEFWGMFASHQFVGNLITL 178 (392)
Q Consensus 150 ~~~~~rg~~~g~~~~~~~~g~~~G~~i~~ 178 (392)
+++|+|++.++....-.+...+++.+-.
T Consensus 360 -~~~e~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 360 -SPEEQGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred -ccccccchhhHHHHHHHHhhhhhHHHHH
Confidence 7899999999998888888877776543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.23 E-value=3.7 Score=40.69 Aligned_cols=58 Identities=7% Similarity=0.000 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhh
Q 016266 113 TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180 (392)
Q Consensus 113 ~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~ 180 (392)
..++.-++.|+..|-.......+..+. .+++||..+-.+.......|...|..++..+
T Consensus 374 ~~~~~~~l~gltnGy~~s~~m~~~p~~----------v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 374 YFIILMLLFGFSNGYLGSLSMCLAPRQ----------VDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888776655444433222 3567888777777666777777787776544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.15 E-value=7.1 Score=40.07 Aligned_cols=129 Identities=14% Similarity=0.082 Sum_probs=69.6
Q ss_pred HHHhhhhhhHHHHHHhh-chhHHHHHhhhHHHHHHHh-----h---hch---------------h---hHHHHHHHHHHh
Q 016266 70 TSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAA-----N---LFP---------------S---WYTMVPASLYLG 122 (392)
Q Consensus 70 ~~~~v~~~~~g~l~dr~-G~r~~l~~g~~~~~l~~~~-----~---~~~---------------~---~~~l~~~r~l~G 122 (392)
+......+..+.++|.| ||-+++.++.+++.++... . +.| + ...++.+--+..
T Consensus 84 G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia 163 (571)
T KOG1237|consen 84 GTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIA 163 (571)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhe
Confidence 33345567788999976 6777888887776543211 1 111 0 124555556667
Q ss_pred hhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhh--hhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHH
Q 016266 123 FAASIIWVGEGTYLTAAALSHASNHKLHEGTVIG--SFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFL 200 (392)
Q Consensus 123 ig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg--~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~ 200 (392)
+|.|+.-+....+-++=.+. ..|++++. ..+.+++...+.|..+...+...+- ...+|..- |.+..
T Consensus 164 ~G~gg~r~~~~~fGadQfd~------~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq-----~~~~w~lg-f~i~~ 231 (571)
T KOG1237|consen 164 LGAGGIRPCLLAFGADQFDE------LDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ-----DNVGWKLG-FGIPT 231 (571)
T ss_pred eccCCCCCcchhhcccccCc------cCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh-----hcccceee-ccHHH
Confidence 78887766655544443321 11233333 6777777666766666554433221 12356442 55555
Q ss_pred HHHHHHHHHH
Q 016266 201 GVITLGTILM 210 (392)
Q Consensus 201 ~~~~~~~~~~ 210 (392)
++..++++++
T Consensus 232 ~~~~lai~iF 241 (571)
T KOG1237|consen 232 VLNALAILIF 241 (571)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.9 Score=36.07 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=56.3
Q ss_pred HHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHH
Q 016266 290 MAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL 369 (392)
Q Consensus 290 ~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~ 369 (392)
.++......+.+++.+.+.+++|.|..+ .+|.+...+-.+. .+.++ .+.++...++.|++.+..++..-.+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm-~lg~~~y~~y~~~---~~~~~-----~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSM-ILGSLGYAIYIAS---FFYPN-----SYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHH-HHHHHHHHHHHHH---HHhhh-----HHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 3444455677778888889999988754 4677766654321 23344 3678889999999999999999999
Q ss_pred HHhhccC
Q 016266 370 LGILFKH 376 (392)
Q Consensus 370 ~~~~~p~ 376 (392)
+.+...+
T Consensus 114 lt~~s~~ 120 (156)
T PF05978_consen 114 LTSYSTE 120 (156)
T ss_pred HHHcCCH
Confidence 9987643
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=87.82 E-value=2.3 Score=31.54 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=42.2
Q ss_pred ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccC
Q 016266 278 TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT 339 (392)
Q Consensus 278 ~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~ 339 (392)
+..++.++.+++-+...+|-.+|.+...++.++..+++ ++..+.+...+..+. +.++.+
T Consensus 21 ~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~-~~~~~l~~~~~~~~~--ma~~~~ 79 (85)
T PF06779_consen 21 DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR-LLRAGLLLTVLSTAA--MALTHS 79 (85)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHH--HHHHhc
Confidence 34566678899999999999999999999999865554 455666666655443 344443
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=86.99 E-value=17 Score=35.93 Aligned_cols=135 Identities=13% Similarity=0.077 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHHHHHh----hhhhhHHHHHHhhchhHHHHHhhhHHH----H
Q 016266 30 VHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLGSKNALILGTTGYW----L 101 (392)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~----v~~~~~g~l~dr~G~r~~l~~g~~~~~----l 101 (392)
++..+++..+.|.+..+.+++...+..+.+......+++-+..+ .+.+..+++.+|+|..|.=..+...-. +
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 35566777777776655566655555445666555555544333 344678999999999998877766432 2
Q ss_pred HHHhhhchh-------hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhh
Q 016266 102 FVAANLFPS-------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN 174 (392)
Q Consensus 102 ~~~~~~~~~-------~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~ 174 (392)
...+...+. ...++..=++.-+|.=.+.-+..-+ ..+..|++|||...|.-.+..++--++--
T Consensus 340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi----------~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQI----------MQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHh----------hcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222222221 1222222222222221122222222 22345899999999987766665555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.1 Score=30.85 Aligned_cols=63 Identities=19% Similarity=0.046 Sum_probs=44.3
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhh
Q 016266 49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSW 111 (392)
Q Consensus 49 ~l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~ 111 (392)
.++++...+.+.+.+..+..|..|.++++.+.++.++..+++.+..+.+...+.... ...++.
T Consensus 17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 444444444444455567888999999999999999988889898888776665554 344443
|
Note that many members are hypothetical proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.63 E-value=5.4 Score=39.22 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=36.2
Q ss_pred hhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHH
Q 016266 285 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL 330 (392)
Q Consensus 285 ~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~ 330 (392)
.+.+...+|.+..++-.+.+-|+.||.|-|... .++.++..++..
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~-llgt~ln~iGa~ 124 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTAL-LLGTVLNGIGAW 124 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHH-HHHHHHHHHHHH
Confidence 456677889899999999999999999988654 578888877743
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=85.42 E-value=2.7 Score=43.94 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=56.0
Q ss_pred HHHHHHhHHHHHHHhhhhhhccC-CCCchhhHHHHHHHHHHHHHHHHhccccCC---CccchHHHHHHHHHHhhhhhhhh
Q 016266 288 GAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTS---GVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 288 ~~~~~~gi~~~~g~~~~G~lsd~-~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~---~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
.+...+....-+..+++|++.|+ +|+++.+ .++.+++.++.++. .....+ +.......++...+..+|.+...
T Consensus 27 ~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI-l~~~ii~~lG~~ll--ai~a~~~~~~~~~~~~~l~gLaLia~G~GgiK 103 (654)
T TIGR00926 27 VLFHTFTYLCYLTPLIGAIIADGWLGKFKTI-LYLSIVYVVGHALL--SFGAIPSSGHPLHDLLDLLGLALIALGTGGIK 103 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHH--HhccCcccccchHHHHHHHHHHHHHhhccccc
Confidence 33444444455667788999998 5777755 46676777665432 222111 00011346677788889999999
Q ss_pred hHHHHHHHhhccC
Q 016266 364 TQLSALLGILFKH 376 (392)
Q Consensus 364 ~~~~a~~~~~~p~ 376 (392)
+...+..+|.+++
T Consensus 104 p~vsaf~gdqf~~ 116 (654)
T TIGR00926 104 PCVSAFGGDQFEE 116 (654)
T ss_pred cCchhhhHhhcCc
Confidence 9999999999964
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.02 E-value=15 Score=36.63 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred HHhhchhHHHHHhhhHHHHHHHh-hh-----c-------------hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhh
Q 016266 83 VRVLGSKNALILGTTGYWLFVAA-NL-----F-------------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH 143 (392)
Q Consensus 83 ~dr~G~r~~l~~g~~~~~l~~~~-~~-----~-------------~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~ 143 (392)
.+|+||++.+.++..+..+.... .. + +++....+..+++|++-+..-.....++....
T Consensus 306 ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~--- 382 (461)
T KOG3098|consen 306 IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY--- 382 (461)
T ss_pred hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh---
Confidence 68999999999998876554432 11 2 13556666789999999887776666666654
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhh
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFV 172 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~ 172 (392)
+++|..+..++-.-...+..+
T Consensus 383 --------~~~~~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 383 --------PDDRAQAFSLFKFYQSVASCV 403 (461)
T ss_pred --------cCchHHHHHHHHHHHHHHHHH
Confidence 456777777665444444333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.13 E-value=48 Score=33.16 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhhccCCCchhHHHHHHH----H-HHhhhhhhHHHHHHhhchhHHHHHhhhHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILY----T-SFTCFSLVASLVVRVLGSKNALILGTTGY 99 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~----~-~~~v~~~~~g~l~dr~G~r~~l~~g~~~~ 99 (392)
+.++.++-+++-++++...|..+.++.+.+... ..|..+....- . +..+.-++..++.+++.+.+++-.-...+
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F 102 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYNLLRSLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFF 102 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 456667777777777777777777776665433 22322222111 1 22234466788999999999986655554
Q ss_pred H
Q 016266 100 W 100 (392)
Q Consensus 100 ~ 100 (392)
.
T Consensus 103 ~ 103 (509)
T COG3202 103 L 103 (509)
T ss_pred H
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 392 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 42/265 (15%), Positives = 72/265 (27%), Gaps = 97/265 (36%)
Query: 131 GEG-TYLTAAALSHASNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGS 188
G G T++ ++K+ + + FW + L
Sbjct: 160 GSGKTWVALDVCL---SYKVQC-----KMDFKIFW------------LNL-------KNC 192
Query: 189 TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLAD 248
S T+L ++ L + D +D S N + S+ + LL
Sbjct: 193 NSPETVL------------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 249 ---VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIC-SLAA 304
LL+ L V + AF+ C L
Sbjct: 241 KPYENCLLV--------LLN--VQ---NAKAWN----------------AFNLSCKIL-- 269
Query: 305 GRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT 364
LTT +T +S + + TL P + +LL L+
Sbjct: 270 --LTTRFKQVTDFLSAATTTHISL-----------DHHSMTLTPDEVKSLLL---KYLDC 313
Query: 365 QLSALLGILFKHDTVTANPTLIRQI 389
+ L + +T NP + I
Sbjct: 314 RPQDL-----PREVLTTNPRRLSII 333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 53/352 (15%), Positives = 111/352 (31%), Gaps = 29/352 (8%)
Query: 21 LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGIL----YTSFTCFS 76
++Y +L F L +A L L G++ Y +
Sbjct: 19 GQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIP 78
Query: 77 LVASLVVRVLGSKNALILG----TTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGE 132
+ A ++++ L K +I G G LF A ++ + + +
Sbjct: 79 IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA 138
Query: 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL----------ITLAVLK 182
++T + + +L+ SF +F + N+ ++ L
Sbjct: 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198
Query: 183 DDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSI 242
K +++ + ++ L +L+ + + + + +F + L L++
Sbjct: 199 AYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIR 258
Query: 243 TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSL 302
A ++ F Y G Q A W+ + V G++ A + G
Sbjct: 259 HWRWA------VLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTM---VCF 308
Query: 303 AAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL 354
GR TG I+ +A + L S +G L L + +
Sbjct: 309 FIGRF-TGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSA 359
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.9 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.9 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.89 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.8 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.79 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.79 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.7 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.64 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.41 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.4 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.16 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-27 Score=228.29 Aligned_cols=334 Identities=10% Similarity=0.042 Sum_probs=215.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhh----ccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTV----NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.++.+..+.+++++..........+.+.+ +.+........+.....+.+++++.|+++||+|||+++.++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 444455555555555444444444433443 3332222333556666777889999999999999999999999887
Q ss_pred HHHHh----hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHh
Q 016266 101 LFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176 (392)
Q Consensus 101 l~~~~----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i 176 (392)
+.... ...++++.+++.|+++|++.+..++...++++++. |+|+|++++|+.....++|..+|+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76553 35689999999999999999999999999999886 78999999999999999999999999
Q ss_pred hhhhc-cCCCCC--------------------CCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhH
Q 016266 177 TLAVL-KDDKGG--------------------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYL 235 (392)
Q Consensus 177 ~~~~~-~~~~~~--------------------~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (392)
+..+. ...... ..+||.. |.+.+++..+..+..++.++|++++++++++ ++++.
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~ 247 (438)
T 3o7q_A 173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP-YMIIVAIVLLVALLIMLTKFPALQSDNHSDA----KQGSF 247 (438)
T ss_dssp TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----STTSH
T ss_pred HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHcCCcccccccccc----cccch
Confidence 88776 332100 0017764 4444444333333334444433222111111 11111
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhh-hccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCC
Q 016266 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI-VTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLP 312 (392)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g 312 (392)
++ +..+.+++|+++......+......... ..+.+.+ .++..| ..+.+....+.+++.++++++.|+++||++
T Consensus 248 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 248 SA---SLSRLARIRHWRWAVLAQFCYVGAQTAC-WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HH---HHHHHTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hh---hHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2335678888877655433222211111 1223333 333334 456788889999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhh
Q 016266 313 SITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 313 ~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
||+.+ ..+.++..++.+. ..+.++ ....+..++.|++.+...+..+++..|.+|++++.+.+...
T Consensus 324 ~~~~~-~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
T 3o7q_A 324 PHKVL-AAYALIAMALCLI--SAFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV 388 (438)
T ss_dssp HHHHH-HHHHHHHHHHHHH--HHHCCH------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH
T ss_pred chHHH-HHHHHHHHHHHHH--HHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Confidence 88754 4566556555432 233332 23344457888999999999999999999977666665443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=224.49 Aligned_cols=337 Identities=9% Similarity=-0.059 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhhhcc---CCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETTVNT---EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA 104 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~ 104 (392)
+.+..+.++.++............+.+.. +...-.+..++......+++++.|+++||+|||+++.++.+++++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33444444444444443333333343332 222223345666667788899999999999999999999998887766
Q ss_pred h-hh----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 105 A-NL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 105 ~-~~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
. .+ +++++.+++.|+++|++.+..+++..++++|+. |+++|++++|+......+|..+|+.++..
T Consensus 108 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 108 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 46 788999999999999999999999888888876 77899999999999999999999998877
Q ss_pred hccCCCCCCCC-cchhHHHHHHHHHHHHHH-HHHhccCCcccccc---cccccc----chhhhhHHHHHHH--HHHhhcc
Q 016266 180 VLKDDKGGSTS-GTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEK---ETADAS----VNFYSYLVSLSKS--ITTLLAD 248 (392)
Q Consensus 180 ~~~~~~~~~~~-wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~--~~~~~~~ 248 (392)
+... .+ ||.. |++.+++.++..+ ..++++|+++..+. ++.+.+ ..++.+.+...++ ..+.+++
T Consensus 178 l~~~-----~g~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (451)
T 1pw4_A 178 GMAW-----FNDWHAA-LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN 251 (451)
T ss_dssp HHHH-----TCCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC
T ss_pred HHHH-----hccHHHH-HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcC
Confidence 6543 35 8875 5555555544333 34556654332110 000000 0000000000111 2356778
Q ss_pred chhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCC--CCchhhHHHHHHH
Q 016266 249 VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIA 324 (392)
Q Consensus 249 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~--g~r~~~~~~g~~~ 324 (392)
|+++......+......... ..+.+.+.++..| ..+.+.+..+.+++.++++++.|++.||+ ++|+.+. .+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG-VFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH-HHHHH
Confidence 88876655443333222111 2233333333334 44678889999999999999999999999 8887543 44444
Q ss_pred HH-HHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhhh
Q 016266 325 QV-VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLIR 387 (392)
Q Consensus 325 ~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~~ 387 (392)
.. ++++. +.+.++.+ .+...+..++.|++.+...+..++++.|.+|++ ++.+++.++.
T Consensus 330 ~~~~~~~~--~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 330 LVTIATIV--YWMNPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHH--TTSCCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHhcccC---HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 43 44332 23333222 356677778899998998999999999999865 6778887653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-24 Score=202.39 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=191.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..+.......+++++.|+++||+|||+++.++..+..+.... ...++++.+++.|+++|++.+...+...+++.|+.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~-- 117 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY-- 117 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC--
Confidence 345556667788999999999999999999999888776664 46789999999999999999999999999999987
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCccccc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGE 221 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~ 221 (392)
|+|+|++++++.......|..+|+.++..+.++ .+||.. |.+.+++.++..+ ..+.+||++++++
T Consensus 118 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T 2gfp_A 118 --------ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC-YLFLLVLCAGVTFSMARWMPETRPVDA 183 (375)
T ss_dssp --------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH-HHHHHHHHHHHHCCCCCSSCCCSTTTC
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHHHHCcccCCCCc
Confidence 678999999999999999999999988876543 368764 4444444443333 2233444322211
Q ss_pred cccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHH
Q 016266 222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAI 299 (392)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~ 299 (392)
++ + ++.++. .+.+++|+++................ ..+.+.+.++ +.+..+.+.+....+++..+
T Consensus 184 ~~--~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 184 PR--T---RLLTSY-------KTLFGNSGFNCYLLMLIGGLAGIAAF-EACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp CC--C---CTTTCS-------THHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cc--c---cHHHHH-------HHHhcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11 0 011111 13456677665544333222221111 1222333322 23345678888999999999
Q ss_pred HHhhhhhhccCCCCchhhHHHHHHH-HHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc
Q 016266 300 CSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 300 g~~~~G~lsd~~g~r~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~ 378 (392)
++++.|++.||.+++ . ..+... ...+.......+.+..+ .+..++..++.|++.+...+..++++.|.+|+++
T Consensus 251 ~~~~~~~l~~r~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 324 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTL--M-WQSVICCLLAGLLMWIPDWFGVMN---VWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLA 324 (375)
T ss_dssp HHHHHHTTTTHHHHH--H-HHHHHHHHHTSSSSSHHHHHHHHH---HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhhcccc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCccc
Confidence 999999999998762 2 233322 22221110111111111 2456677788999999999999999999999888
Q ss_pred cccchhhh
Q 016266 379 VTANPTLI 386 (392)
Q Consensus 379 ~~a~~~~~ 386 (392)
+.+.+.++
T Consensus 325 g~~~g~~~ 332 (375)
T 2gfp_A 325 GTAGALVG 332 (375)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 88888765
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-22 Score=196.25 Aligned_cols=303 Identities=12% Similarity=-0.007 Sum_probs=183.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHh-hchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr-~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
.+.......+++++.|+++|| +|||+++..+.++..+.... ..+++++.+++.|+++|++.+...+...++++|+.
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-- 137 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY-- 137 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHc--
Confidence 455556667889999999999 89999999999888777664 46789999999999999999999999999999987
Q ss_pred hhhhcCCCccch--hhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc-CCccc
Q 016266 143 HASNHKLHEGTV--IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR-KEEDK 219 (392)
Q Consensus 143 ~~~~~~~~~~~~--rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~-~~~~~ 219 (392)
|+++ |+++++++....++|..+|+.++..+.++ .+||.. |.+.++..+++.+..++.+ +..++
T Consensus 138 --------~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 138 --------DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-----AGYHVA-FSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp --------SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHH-HHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred --------CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHH-HHHHHHHHHHHHHHHHHhCcccccc
Confidence 6666 78888888889999999999998877654 368875 5555554455444443332 21111
Q ss_pred c-ccccccccchhhhh-HHH--------------------------------------------HHHHHHHhhccch---
Q 016266 220 G-EKETADASVNFYSY-LVS--------------------------------------------LSKSITTLLADVR--- 250 (392)
Q Consensus 220 ~-~~~~~~~~~~~~~~-~~~--------------------------------------------~~~~~~~~~~~~~--- 250 (392)
+ ++++++.+..+.++ .+. ..++.....++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 1 00000000000000 000 0000000001111
Q ss_pred -hHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhH----HHHHH
Q 016266 251 -MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV----SGGAI 323 (392)
Q Consensus 251 -~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~----~~g~~ 323 (392)
.+.+.............. ..+.+.+..+..+ ....+......+++..++.++.|+++||++||+... ..+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQG-SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGG-GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 111111111111111111 1122222222222 235667777888889999999999999999885322 24555
Q ss_pred HHHHHHHHHHhcc-----ccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhhh
Q 016266 324 AQVVVFLWILINY-----SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLIR 387 (392)
Q Consensus 324 ~~~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~~ 387 (392)
+..+++++..... ..+.+ .+...+..++.|++.+...+..++++.|.+|++ ++.+.+.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 429 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVS---PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFL 429 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCC---THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcc---HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555433211100 11111 356677788999999998999999999999865 6778887653
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=193.13 Aligned_cols=305 Identities=9% Similarity=0.024 Sum_probs=173.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h------------------hchhhHHHHHHHHHHhhhH
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N------------------LFPSWYTMVPASLYLGFAA 125 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~------------------~~~~~~~l~~~r~l~Gig~ 125 (392)
.+.++....+++++.|+++||+|||+++.++.+++.++.+. . .++++..+++.|+++|+|.
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34455667788999999999999999999999988877654 2 3678999999999999999
Q ss_pred HHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC---CCCCcchhHHHHHHHH
Q 016266 126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGV 202 (392)
Q Consensus 126 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~---~~~~wr~~~f~i~~~~ 202 (392)
|...+....|++|++ |+++||+..++.......|..++..++......... ...+||. .+.+..+.
T Consensus 141 G~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 209 (491)
T 4gc0_A 141 GLASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY-MFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH-HHHTTHHH
T ss_pred HHHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH-Hhhhhhhh
Confidence 999999999999987 889999999999988898888888877666543321 1223443 23332333
Q ss_pred HHHHHHHHHhccCCccc----cccccccc---cc-------hhhhhHHHH---HHH---HHHhhccchhHHHHHHHHhhh
Q 016266 203 ITLGTILMCFLRKEEDK----GEKETADA---SV-------NFYSYLVSL---SKS---ITTLLADVRMLLIIPLFAYSG 262 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~----~~~~~~~~---~~-------~~~~~~~~~---~~~---~~~~~~~~~~~~l~~~~~~~g 262 (392)
.++..+..++++|+++. .++++.+. +. .+....++. .++ .....+.++.........+..
T Consensus 210 ~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (491)
T 4gc0_A 210 ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQ 289 (491)
T ss_dssp HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHH
Confidence 33333333445554321 11110000 00 000000000 000 011122222222221111111
Q ss_pred HHhhhhhcccchhhhcc-ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCC
Q 016266 263 LQQAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSG 341 (392)
Q Consensus 263 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~ 341 (392)
+........|.+.+... ..............++...++.++.+++.||+|||+.. ..+.....++++.+........+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHHHhcccc
Confidence 11111112233333221 11222344556778888999999999999999999754 45555555543332111222211
Q ss_pred ccchHHHHHHHHHHhh-hhhhhhhHHHHHHHhhccCC-ccccchh
Q 016266 342 VLGTLYPLIMAALLGI-GDGVLNTQLSALLGILFKHD-TVTANPT 384 (392)
Q Consensus 342 ~~~~~~~~i~~~l~G~-~~~~~~~~~~a~~~~~~p~~-~~~a~~~ 384 (392)
.....+...++.. ......+..+.+.+|++|++ |+.+++.
T Consensus 369 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 369 ---GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 1222222222222 23334567789999999965 4556553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-18 Score=167.68 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhh-chhHHHHHhhhHHHHHHHh-hhch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 63 ISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAA-NLFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 63 ~~~~~~~~~~~v~~~~~g~l~dr~-G~r~~l~~g~~~~~l~~~~-~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
...+.......+++++.|+++||+ |||+++.++.+++++.... ..++ +++.+++.|++.|++.+...+...++++++
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 137 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQ 137 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 345566667778899999999999 9999999999888776654 3667 888889999999999999999988988888
Q ss_pred hhhhhhhcCCCccchhhhhHHH---HHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 140 ALSHASNHKLHEGTVIGSFNGE---FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~---~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
. |+++|+++.+. .....++|..+|+.++..+... .+||.. |.+.+++.+++.+..++
T Consensus 138 ~----------~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 138 F----------DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-----FGAAVA-FGIPGVLMFVATVFFWL 197 (524)
T ss_dssp C----------STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----SCHHHH-HHHHHHHHHHHHHHHHS
T ss_pred c----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHH-HHHHHHHHHHHHHHHHH
Confidence 6 77888876666 7788888999998887766543 368774 55555554544444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=172.46 Aligned_cols=308 Identities=13% Similarity=0.054 Sum_probs=164.6
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----hhchhhH-HHHHHHHHHhhh
Q 016266 50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWY-TMVPASLYLGFA 124 (392)
Q Consensus 50 l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~~~~~~~-~l~~~r~l~Gig 124 (392)
+++.++.+........+.......+++++.|+++||+|||+++.++..++.+.... ...+... .++..+.+.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333455666677889999999999999999999888765432111 1112111 123355666666
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHH
Q 016266 125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT 204 (392)
Q Consensus 125 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~ 204 (392)
.+..++.......++.++ .+++|+..+|......++|..+|+.++..+.. .+||.. |++.++..+
T Consensus 114 ~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------~~~~~~-f~~~~~~~~ 178 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGASIVGIMFT------INNQFV-FWLGSGCAL 178 (417)
T ss_dssp TTHHHHTTHHHHHHHHHH--------HHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------HCSHHH-HTTTTTTTT
T ss_pred HHHHHhhhHHHHHHHHHH--------hhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hchhHH-HHHHHHHHH
Confidence 655555444444444321 12356777776655567777788877766653 247653 433333322
Q ss_pred HHHHHHHhccCCccc-cccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHh-hh--hhcccchhhhc-c
Q 016266 205 LGTILMCFLRKEEDK-GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ-AF--VWAEFTKEIVT-P 279 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~--~~~~~~~~~~~-~ 279 (392)
+..+..++.+|++++ .++++.+.+.+++.+. ++..+.+++|+++......+...... .+ +.+.|...... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSL----KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254 (417)
T ss_dssp THHHHSCSSCCCCSCSSCSSSSSSSCCCCCCH----HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHcCcccccccccccccccccccccH----HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222222322211 1001000000111111 22335677888765443322111111 11 11111111111 1
Q ss_pred ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhh
Q 016266 280 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 359 (392)
Q Consensus 280 ~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~ 359 (392)
+.+.+..++...+..++.+++.++.|+++||+|||+.+ ..+.++..+.++. ....++ .+.+++..++.+++.
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l-~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~~~~ 326 (417)
T 2cfq_A 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL-LLAGTIMSVRIIG--SSFATS-----ALEVVILKTLHMFEV 326 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHH--HTTCCS-----HHHHHHHTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH-HHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHH
Confidence 11233456777788888999999999999999988754 4566555555332 233332 245556666777777
Q ss_pred hhhhhHHHHHHHhhccCC-ccccchh
Q 016266 360 GVLNTQLSALLGILFKHD-TVTANPT 384 (392)
Q Consensus 360 ~~~~~~~~a~~~~~~p~~-~~~a~~~ 384 (392)
+...+...+++.|.+|++ ++++++.
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 327 PFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 777777889999999864 4556665
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-08 Score=97.57 Aligned_cols=171 Identities=12% Similarity=-0.036 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhhhccC-CCchhHHH----HHHHHHHhhhhhhHHHHHHhh--chhHHHHHhhhHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISL----GILYTSFTCFSLVASLVVRVL--GSKNALILGTTGYW 100 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~~----~~~~~~~~v~~~~~g~l~dr~--G~r~~l~~g~~~~~ 100 (392)
++++.+.+..++....+.......+.+..+ .+.+.... +.......++.++.|++.||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 444455555555444444444444444333 34443333 333334456778899999999 99999988876655
Q ss_pred -HHHHhh-hc--hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH-hhhhhhH
Q 016266 101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL 175 (392)
Q Consensus 101 -l~~~~~-~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~-g~~~G~~ 175 (392)
+..... .. .+...+...-++.|++.+...+....++.+.. |+++||+++|+....... |..+|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 443332 33 35666666778889888887777777777765 778999999999998998 9999998
Q ss_pred hhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 176 i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
+.+.+.+.. +++.. |.+.+++.+++.++.++++
T Consensus 402 ~~g~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFF-----GWDGG-FMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSS-----CSHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CcHHH-HHHHHHHHHHHHHHHHHHH
Confidence 888776543 45543 5565666666555544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.3e-08 Score=92.77 Aligned_cols=125 Identities=17% Similarity=0.095 Sum_probs=86.5
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++.++.|++.||+|||+++..+..+.++.... ...++...+++...+.+++.+...+....+.+|..
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 341 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------- 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 34456788999999999999998887776654433 34566666666777778877666666667777775
Q ss_pred CccchhhhhHHH-HHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 150 HEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 150 ~~~~~rg~~~g~-~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
|++.||.+.|. +.....+|..+|+.+.+.+.+.. +++. .|.+.+++.+++.++.+
T Consensus 342 -p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-----g~~~-~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----GFQG-AYLVLGLVALGFTLISV 397 (417)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----HHHH-HHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----CcHH-HHHHHHHHHHHHHHHHH
Confidence 78899999887 35666788888888877665432 3433 35555555555555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-07 Score=89.63 Aligned_cols=105 Identities=6% Similarity=-0.174 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+.......++.++.|++.||+|||+++..+.++..+.... ...++...++.. ++.|++.+..++....+..+..
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~---- 376 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNL---- 376 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhc----
Confidence 3344455677889999999999999999988776665443 345555544433 7888888887777666554443
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
|+ +|+.+.++.. ...+|..+|+.+.+.+.+.
T Consensus 377 ------~~-~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 377 ------GQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp ------GG-GHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred ------cc-cccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44 4888888665 4567888888877766654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=90.02 Aligned_cols=127 Identities=10% Similarity=-0.068 Sum_probs=83.8
Q ss_pred HHhhhhhhHHHHHHhhchhHHHH-----HhhhHHHHHHHhh-hc---------hhhHHHHHHHHHHhhhHHHHHhhhhHH
Q 016266 71 SFTCFSLVASLVVRVLGSKNALI-----LGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGEGTY 135 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~-----~g~~~~~l~~~~~-~~---------~~~~~l~~~r~l~Gig~g~~~~~~~~~ 135 (392)
...++.++.+++.||+|||+... .+..+..+..... .. .++..++..-++.|++.+...+....+
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 410 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSV 410 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44466788899999999987654 4444443333221 21 255666667789999998888888888
Q ss_pred HHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
+.+.. |+++||+++|+......+|..+|+.+...+... +... .|.+.+++.+++.+..++..
T Consensus 411 ~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 411 TTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------SEVA-YFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------STTH-HHHHTHHHHHHHHHHHHHC-
T ss_pred HHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88876 788999999999999999999998887665432 2222 25555555555444444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.4e-06 Score=83.79 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=76.6
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--h-h---chhhHHHHHHHHHHhhhHHH-HHhhhhHHHHHHhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-L---FPSWYTMVPASLYLGFAASI-IWVGEGTYLTAAALSH 143 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~-~---~~~~~~l~~~r~l~Gig~g~-~~~~~~~~~~~~~~~~ 143 (392)
...++.++++.+.||+|||+.+..+..+..+.... . . .+++..++ .-.+...+.+. ..+....|.+|..
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~f--- 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLSEIF--- 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHhC---
Confidence 44567788999999999999998888766543322 1 1 12222222 11111111111 1233456777775
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC-CCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTILM-CFLRKEED 218 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~-~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~ 218 (392)
|.+.|++++|+..+...++..+++.+...+..... ....++.. .|++++++.+++.+.. +++||++.
T Consensus 400 -------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 400 -------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF-SYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp -------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred -------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHheecCCCC
Confidence 88899999998877777777666654433321100 00012222 2566777766666543 66777643
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.3e-07 Score=83.62 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=76.8
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhh
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 361 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~ 361 (392)
+.++.+.+.+.+.++..+++++.|+++||+|||+.+ ..+.++..++.+.. ...++ .+.+++..++.|++.+.
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~g~~~~~ 104 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVA--VTTSS-----LTVLIAASAMQGMGTGV 104 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-HHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999999865 46666666664432 23333 46778888999999999
Q ss_pred hhhHHHHHHHhhcc-CCccccchhhh
Q 016266 362 LNTQLSALLGILFK-HDTVTANPTLI 386 (392)
Q Consensus 362 ~~~~~~a~~~~~~p-~~~~~a~~~~~ 386 (392)
..+..++++.|.+| ++++.+++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (375)
T 2gfp_A 105 GGVMARTLPRDLYERTQLRHANSLLN 130 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCCSHHHHHH
T ss_pred hhhhHHHHHHHHCCHHHHHHHHHHHH
Confidence 99999999999997 56677777654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=79.92 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=71.6
Q ss_pred cccchhhHHHHHHhHHHHHHHhhhhhhccCC-CCchhhHHHHHHHHHHHHHHHHhcccc-CCCccchHHHHHHHHHHhhh
Q 016266 281 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTLYPLIMAALLGIG 358 (392)
Q Consensus 281 ~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~-g~r~~~~~~g~~~~~i~~~~~~~~~~~-~~~~~~~~~~~i~~~l~G~~ 358 (392)
.+..+.+.+...+.++..+++++.|+++||+ |||+.+ .++.++..++.++ ..+.+ + .+.+++..++.|++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~-~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~g~~ 122 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI-LWLSLIYCVGHAF--LAIFEHS-----VQGFYTGLFLIALG 122 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH-HHHHHHHHHHHHH--HHHTSSC-----HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHH--HHHhccc-----HHHHHHHHHHHHHh
Confidence 3445788999999999999999999999999 998854 4666666666443 23444 3 46777888899999
Q ss_pred hhhhhhHHHHHHHhhccCCc
Q 016266 359 DGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 359 ~~~~~~~~~a~~~~~~p~~~ 378 (392)
.+...+..++++.|.+|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 123 SGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHTTHHHHHHHHHHTCSTTT
T ss_pred ccccchhHHHHHHHHcCccc
Confidence 99999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.76 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.8e-25 Score=210.67 Aligned_cols=303 Identities=10% Similarity=-0.042 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hh----chhhHHHHHHHHHHhhhHHHHHhhhhHHHH
Q 016266 63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL----FPSWYTMVPASLYLGFAASIIWVGEGTYLT 137 (392)
Q Consensus 63 ~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~ 137 (392)
+..+.+...+++++++.|+++||+|||+++.++.++.++..+. .. .+++..+++.|++.|++.+..++....+++
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 142 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3456677788899999999999999999999999887765543 22 357778899999999999999998888888
Q ss_pred HHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHH-HHHHHHhccCC
Q 016266 138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKE 216 (392)
Q Consensus 138 ~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~-~~~~~~~~~~~ 216 (392)
++. |+|+||+++|+...+..+|..+|+.+........ .+||.. +++..++.++ +++..++.+++
T Consensus 143 ~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----~~w~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 143 HWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----NDWHAA-LYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp TTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT----CCSTTC-THHHHHHHHHHHHHHHHHCCCS
T ss_pred HHH----------HhhcccccccccccccchhhhhhhhhhhhHhhhh----hccccc-chhhhhhHHHHHHHHHHhcccc
Confidence 876 7899999999999999999999988776655432 257765 4444444443 33444555554
Q ss_pred cccccc---ccccc--cc----h--hhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccc--cc
Q 016266 217 EDKGEK---ETADA--SV----N--FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL--GV 283 (392)
Q Consensus 217 ~~~~~~---~~~~~--~~----~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--g~ 283 (392)
++.... ++.+. +. . ++.+.++ ....+.++++.++......++........ ..+.+.+..+.. +.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 284 (447)
T d1pw4a_ 208 PQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFAL 284 (447)
T ss_dssp STTTCCCSCTTTCCC-------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHBTTBSCCCH
T ss_pred hhhcccchhhhhhhhcccchhhccccccchhh--HHHHHHHcCchHHHHHHHhhhhhhhhhcc-hhhhhhhccccccccc
Confidence 322110 00000 00 0 0000011 11234567777766554433222211111 122233333333 34
Q ss_pred chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhh
Q 016266 284 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 284 s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
.+.+......+++.++++++.|+++||++|++......................+..+ .+...++.++.|++.+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 361 (447)
T d1pw4a_ 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN---PTVDMICMIVIGFLIYGPV 361 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC---HHHHHHHHHHHHHHHTHHH
T ss_pred chhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999876533221111111111111122222221 3566677788899988889
Q ss_pred hHHHHHHHhhccCCc-cccchhhh
Q 016266 364 TQLSALLGILFKHDT-VTANPTLI 386 (392)
Q Consensus 364 ~~~~a~~~~~~p~~~-~~a~~~~~ 386 (392)
+..+++..|.+|++. +.+.+..+
T Consensus 362 ~~~~~~~~~~~p~~~~g~~~g~~~ 385 (447)
T d1pw4a_ 362 MLIGLHALELAPKKAAGTAAGFTG 385 (447)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999999998654 66777543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=7e-19 Score=165.53 Aligned_cols=333 Identities=12% Similarity=0.060 Sum_probs=181.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHhHhh-hccCCCchhH----HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 26 YTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~g~~----~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.||.+.+++.+++.+..+.......+. +.++.+.+.. ..++......+++++.|+++||+|||+++.++..+..
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3467778777777776665544333222 2222233322 2445555667889999999999999999999887766
Q ss_pred HHHHhh-hchh----hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhH
Q 016266 101 LFVAAN-LFPS----WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL 175 (392)
Q Consensus 101 l~~~~~-~~~~----~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~ 175 (392)
+..... ..++ ....+..+.+.+.+.+...........+...+ +++++.+..+........+..+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc--------hhhhhHHHHHHHhhhhccccccccc
Confidence 544432 2222 22334456666666555544433333333211 2335556666666677777788888
Q ss_pred hhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHH
Q 016266 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 255 (392)
Q Consensus 176 i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (392)
++..+... +|+...+.......+...+..+..+++++..++++.+.+..+... .. ...+..++++.+...
T Consensus 157 ~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 157 IVGIMFTI------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS-LK---LALELFRQPKLWFLS 226 (417)
T ss_dssp HHHHHHHH------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCC-HH---HHHHHTTSSHHHHHH
T ss_pred cccccccc------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccc-cc---ccccccccccccchh
Confidence 77766542 344432333333323333333344443322211111110011111 11 111233344333322
Q ss_pred HHHHhhhHHhh-h--hhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHH
Q 016266 256 PLFAYSGLQQA-F--VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW 331 (392)
Q Consensus 256 ~~~~~~g~~~~-~--~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~ 331 (392)
........... + ....+..... ....+....+.......++..++..+.|++.||.++|+.+ .++.++..++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~-~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL-LLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch-hhhHHHHHHhhhc
Confidence 22111111111 1 1111111111 1112223456667888889999999999999999988754 4566556555432
Q ss_pred HHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchh
Q 016266 332 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPT 384 (392)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~ 384 (392)
....++ .+..++..++.|++.+...+..++++.|.+|++ ++++++.
T Consensus 306 --~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (417)
T d1pv7a_ 306 --SSFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp --HHTCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred --cccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence 234443 367778888999999999999999999999865 4667764
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=8.5e-10 Score=102.18 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=98.2
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++..+.+++.||+|+|+.+.++..+.++.... ...++.+.+++..++.|++.+..++...+++.+..
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------- 341 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------- 341 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 34456788999999999999999998887776554 46788888888889999999999999888888876
Q ss_pred CccchhhhhHHHHH-HHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCc
Q 016266 150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE 217 (392)
Q Consensus 150 ~~~~~rg~~~g~~~-~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~ 217 (392)
|+++||+..|... ....+|..+|+.+.+.+.+. .|++.. |.+.+++.++..++. +.+|++.
T Consensus 342 -~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGA-YLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HCHHHH-HHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHH-HHHHHHHHHHHHHHHHHhhcCCC
Confidence 8889999999754 44567888888887776653 356554 555565555544443 5555543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=6.1e-08 Score=91.16 Aligned_cols=129 Identities=13% Similarity=-0.092 Sum_probs=82.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH---HHhh---hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF---VAAN---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~---~~~~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
+.......++.++.|++.||++||+..........+. .... ...+....++.-++.|++.+...+....+..+.
T Consensus 292 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445577889999999999887554444333221 1111 234556666666788888877777777777776
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHH-hhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~-g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
. |+++||+++|+....... |.++++.+.+.+.++ .||+.. +.+..++.+++.++.
T Consensus 372 ~----------p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-----~g~~~~-~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 372 A----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-----FGWDGG-FMVMIGGSILAVILL 427 (447)
T ss_dssp S----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----SCSHHH-HHHHHHHHHHHHHHH
T ss_pred c----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHH-HHHHHHHHHHHHHHH
Confidence 5 788999999987665555 556677777666554 356654 445555555554443
|