Citrus Sinensis ID: 016280

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDANGQTNASQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHcccccHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHccEEEEcccccccccHHHHcccccHHHHHccccccccccccccccEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
makdgpnwdgLLKWSLahsdgtrstrnlSEEDRRWFMEAMQSQTVDVIKRMKEITLVmqtpeqvlesqgvtpqDIEDMLDELQEHVESIdmandlhsigglapllGYLKNSHANIRAKAGEVVTTIVQnnprsqqlVMEAnglepllsnfasdpdvtvRTKALGAISSLirhnkpgieAFRLANGYAALRDALGSESVKFQRKALNLIQYLLnenasdcsvvdklgfpRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIkgislmspedlgaaREERHLVDSLWNacynepsslrdkgllvlpgedapppdvaskhfepplrawaanpaskkssveqketplllgpgpsseatsnqdtsmtdangqtnasq
Flexible Loop (DISEMBL)
MAKDGPNWDGLLKWslahsdgtrstrnlseedRRWFMEAMQSQTVDVIKRMKEITLVMqtpeqvlesqgVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIsslirhnkpgiEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHlassedpdvREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAanpaskkssvEQKETplllgpgpsseatsnqdtsmtdangqtnasq
Low Complexity Region (SEG)
MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVreaalrgllelareKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDANGQTNASQ
Disordered region (IsUnstruct)
*********GLLKWS*******************WFMEAMQSQTVDVIKRMKEITLVMQ**************************VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN******LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA**************L***********************************************RHLVDSLWNACYNE*********L***********************************************************************
Disordered Region (DISOPRED)
****GPNWDGLLK***********************************KRMKEITLVM***************DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLG**************GAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPP*DVA**********************************************************
Disordered Region (DISEMBL)
MAKDGPNWDGLLKWSLAHS********LSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWA**************TPLLL***************************
Disordered Region (DISPRO)
*****PNWDGLLKWSLAHSD********SEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAAN*************P******************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDxxxxxxxxxxxxxxxxxxxxxHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKETPLLLGPGPSSEATSNQDTSMTDANGQTNASQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q0V4C4	211	Hsp70 nucleotide exchange	N/A	no	0.436	0.810	0.322	1e-14
Q5AYT7	218	Hsp70 nucleotide exchange	yes	no	0.441	0.793	0.307	2e-13
Q99P31	357	Hsp70-binding protein 1 O	yes	no	0.591	0.649	0.294	3e-13
A1DLW4	216	Hsp70 nucleotide exchange	N/A	no	0.436	0.791	0.308	5e-13
Q4WDH3	216	Hsp70 nucleotide exchange	yes	no	0.436	0.791	0.308	6e-13
Q6CNM7	289	Hsp70 nucleotide exchange	yes	no	0.479	0.650	0.308	2e-12
Q0CH70	212	Hsp70 nucleotide exchange	N/A	no	0.433	0.801	0.306	2e-12
Q2GXZ7	267	Hsp70 nucleotide exchange	N/A	no	0.311	0.456	0.36	5e-12
Q6IMX7	357	Hsp70-binding protein 1 O	yes	no	0.579	0.635	0.288	2e-11
Q4P7F2	285	Hsp70 nucleotide exchange	N/A	no	0.339	0.466	0.328	4e-11

>sp|Q0V4C4|FES1_PHANO Hsp70 nucleotide exchange factor FES1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=FES1 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 4   DGPNWDGLLKWSLAHSDGTR-----STRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVM 58
           + P  + LLKW + +SD +R     + + LSE D+    EA+Q     V  R      +M
Sbjct: 2   NDPQLNNLLKWGIQNSDASRNDPSTAPQPLSEVDK----EALQQLIAGV--RGPSDADLM 55

Query: 59  QTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAK 118
           Q   QV+E+   T +      +  ++ ++ ID AN++ ++G    L+  L++    IR  
Sbjct: 56  QDSFQVIENNEATAEAKHQAFENFEQLIQGIDNANNMEALGLWTKLIKQLESEDPVIRKW 115

Query: 119 AGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177
           A    +T VQNN RSQ+ L++  N +  L+    SDPD T R KA  A+SS +R+ +PG+
Sbjct: 116 AAWCCSTAVQNNVRSQERLLVLKNAIPTLVRLATSDPDKTARKKATSALSSAVRNFQPGL 175

Query: 178 EAF 180
           +A 
Sbjct: 176 DAV 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.
Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|Q5AYT7|FES1_EMENI Hsp70 nucleotide exchange factor fes1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fes1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 6   PNWDGLLKWSLAHSDGTRST----RNLSEEDRRWFMEAMQS------QTVDVIKRMKEIT 55
           PN + LLKW + +S  T+ T     N S+  R      M S         D++K   E  
Sbjct: 3   PNMNNLLKWGIQNSTATQQTSDSNNNASQAPRSNITPEMLSALFGGPSEADLMKAAME-- 60

Query: 56  LVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANI 115
             +++ E  LE++ +         D  ++ +ESID AN+L  +G   PL+  LK+   ++
Sbjct: 61  -ALRSDEVDLENKLIA-------FDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDM 112

Query: 116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175
           R  A   + T VQNN ++Q  ++  N +  L+S    DP   VR KA+ A+SS +R+ +P
Sbjct: 113 RRMAAWCIGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQP 172

Query: 176 GIEAF--RLANGYAA 188
           G       L  GYA+
Sbjct: 173 GTNELVKHLPGGYAS 187

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q99P31|HPBP1_MOUSE Hsp70-binding protein 1 OS=Mus musculus GN=Hspbp1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 9/241 (3%)

Query: 28  LSEEDRRWFMEAM------QSQTVDVIKRMKEITLVMQTPEQVLESQGVT-PQDIEDMLD 80
           +SEE R+W  EAM      Q + V+ +K    + L   TP    E++  T  Q+ E  L+
Sbjct: 65  MSEERRQWLQEAMSAAFRGQREEVEQMKNCLRV-LSQATPAMAGEAELATDQQEREGALE 123

Query: 81  ELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME 139
            L +  E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V+ 
Sbjct: 124 LLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG 183

Query: 140 ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVK 199
              L  LL     D   TVR KAL AIS L+R  + G+  F   +G++ L  A+  +  K
Sbjct: 184 LGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 243

Query: 200 FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259
            + K+  L+Q LL  +      +  +G  + ++ L  +E     E  L  L  L  +   
Sbjct: 244 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 303

Query: 260 G 260
           G
Sbjct: 304 G 304

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 27/198 (13%)

Query: 6   PNWDGLLKWSLAHSDGTR-------------STRNLSEEDRRWFMEAMQSQTVDVIKRMK 52
           PN + LLKWS+ +S   R             S  NL+ E     + A+     D    MK
Sbjct: 3   PNMNNLLKWSIENSTSARQAADSNDAAPAPTSRSNLNPE----MLSALFGGPSDA-DLMK 57

Query: 53  EITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH 112
                + + E  LE++ +         D  ++ +ESID AN+L  +G   PL+  LK+  
Sbjct: 58  AAMEALHSDEVDLENKMIA-------FDNFEQLIESIDNANNLEPLGLWTPLVELLKHEE 110

Query: 113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 172
           A +R  A   + T VQNN ++Q  ++  N L  L++   SDP    R KA+ AISS +R+
Sbjct: 111 AEMRRMAAWCIGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRN 170

Query: 173 NKPGIEAF--RLANGYAA 188
            +P ++ F   L  GY +
Sbjct: 171 YQPAMDEFVKHLPEGYTS 188

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 27/198 (13%)

Query: 6   PNWDGLLKWSLAHSDGTR-------------STRNLSEEDRRWFMEAMQSQTVDVIKRMK 52
           PN + LLKWS+ +S   R             S  NL+ E     + A+     D    MK
Sbjct: 3   PNMNNLLKWSIENSTSARQAGNSNGTGPAPASRSNLNPE----MLSALFGGPSDA-DLMK 57

Query: 53  EITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH 112
                + + E  LE++ +         D  ++ +ESID AN+L  +G   PL+  LK+  
Sbjct: 58  AAMEALHSDEVDLENKMIA-------FDNFEQLIESIDNANNLEPLGLWTPLVELLKHEE 110

Query: 113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 172
           A +R  A   + T VQNN ++Q  ++  N L  L++   SDP    R KA+ AISS +R+
Sbjct: 111 AEMRRMAAWCIGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRN 170

Query: 173 NKPGIEAF--RLANGYAA 188
            +P ++ F   L  GY +
Sbjct: 171 YQPAMDEFVKHLPEGYTS 188

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q6CNM7|FES1_KLULA Hsp70 nucleotide exchange factor FES1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=FES1 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 11  LLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGV 70
           LL WS+A++ G    +  + +     +E +     D    MK    V+  PE  LE++ V
Sbjct: 4   LLHWSIANAQGDDEAKARAGQPDPKLLEQLFGGGPDEPTLMKHAMAVISNPEATLENKLV 63

Query: 71  TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN 130
                    D  +  +E++D AN++ ++    PL+  L +    +RA A  V  T VQNN
Sbjct: 64  A-------FDNFEMLIENLDNANNIENMKLWEPLITVLDDPEPELRAFALSVTGTAVQNN 116

Query: 131 PRSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA- 187
            +SQ    + +G    +   AS    D  VRTKA   +S+LIRHNK   + F   NG   
Sbjct: 117 DQSQNNFAKYDGALAKVIKLASGRAEDAQVRTKAFYTLSNLIRHNKLIYDQFNQLNGLQI 176

Query: 188 ---ALRDALGSESVKFQRKAL 205
               L+DA  SE +K +  AL
Sbjct: 177 IAPVLKDANASEKLKLRAMAL 197

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 19/189 (10%)

Query: 7   NWDGLLKWSLAHSDGTRSTRNLSEE--DRRWFMEAMQS-----QTVDVIKRMKEITLVMQ 59
           N + +LKWS+ +S    S +N + +   R    E M +        D++K   E    ++
Sbjct: 4   NMNKILKWSIQNSTNASSDQNAAADATSRGLTPEMMATLFGGPSDADLMKASME---ALR 60

Query: 60  TPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKA 119
           + E  LE++ V         D  ++ +ESID AN+L  +G   PL+  L++  A++R  A
Sbjct: 61  SDEVDLENKLVA-------FDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMA 113

Query: 120 GEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE- 178
              V T VQNN ++Q  ++  N L  L++   SDP+   R KA+ A+SS +R+ +P ++ 
Sbjct: 114 AWCVGTAVQNNEKAQDKLVVLNALPTLVAMSTSDPNPAARKKAVYALSSAVRNYQPAMDE 173

Query: 179 -AFRLANGY 186
            A  L  GY
Sbjct: 174 VAKHLPEGY 182

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q2GXZ7|FES1_CHAGB Hsp70 nucleotide exchange factor FES1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=FES1 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 57  VMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIR 116
           +M+   +VL  +  T  +     D  ++ +ES+D AN+L  +   APLLG L +  A +R
Sbjct: 86  LMKAAMEVLTDKSATLDNQLIAFDNFEQLIESLDNANNLEPLKLWAPLLGLLAHDEAEMR 145

Query: 117 AKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNK 174
             A   V T VQNN R+Q+ ++   GL P+L   A+    DV VR KA+ A+SS +R+ +
Sbjct: 146 RMAAWCVGTAVQNNARTQERLLAEGGL-PILVGLATKEGEDVAVRRKAIYALSSAVRNCQ 204

Query: 175 PGIEA 179
           P ++A
Sbjct: 205 PAMDA 209

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q6IMX7|HPBP1_RAT Hsp70-binding protein 1 OS=Rattus norvegicus GN=Hspbp1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 9/236 (3%)

Query: 33  RRWFMEAM------QSQTVDVIKRMKEITLVMQTPEQVLESQGVT-PQDIEDMLDELQEH 85
           R+W  EAM      Q + V+ +K    + L   TP    E++  T  Q+ E  L+ L + 
Sbjct: 70  RQWLQEAMSAAFRGQREEVEQMKNCLRV-LSQATPPTAGEAELATDQQEREGALELLADL 128

Query: 86  VESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE 144
            E++D A D   + G+  L+G YL+   A +R +A +++ T  QN    Q+ V+    L 
Sbjct: 129 CENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 188

Query: 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKA 204
            LL     D   TVR KAL AIS L+R  + G+  F   +G++ L  A+  +  K + K+
Sbjct: 189 KLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 248

Query: 205 LNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260
             L+Q LL  +      +  +G  + ++ L  +E     E  L  L  L  +   G
Sbjct: 249 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 304

Inhibits HSPA1A chaperone activity by changing the conformation of the ATP-binding domain of HSPA1A and interfering with ATP binding. Interferes with ubiquitination mediated by STUB1 and inhibits chaperone-assisted degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 79  LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 138
           LD  +  +E ID AN++ S+   +P++  L    A I+  A  ++ T VQNN ++Q  V+
Sbjct: 85  LDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAAAWIIGTAVQNNDKAQMAVL 144

Query: 139 EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV 198
           + + +  LL    S  D  VR KA+ A+S L++HN   +  F   +G+  L  AL   ++
Sbjct: 145 DFHPVAALLDLLHSHVD-EVRAKAMYALSGLLKHNPAAMHQFDQLDGWNMLNMALVDPNL 203

Query: 199 KFQRKALNLIQYLL 212
             +RK   LI  LL
Sbjct: 204 GLRRKTAFLINALL 217

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
224087439	370	predicted protein [Populus trichocarpa]	0.941	0.997	0.845	0.0
224138850	395	predicted protein [Populus trichocarpa]	0.984	0.977	0.803	0.0
225440422	396	PREDICTED: hsp70-binding protein 1-like	0.992	0.982	0.796	1e-180
356496082	386	PREDICTED: hsp70-binding protein 1-like	0.979	0.994	0.803	1e-179
356504358	384	PREDICTED: hsp70-binding protein 1-like	0.974	0.994	0.783	1e-175
255646284	384	unknown [Glycine max]	0.974	0.994	0.778	1e-173
449448614	397	PREDICTED: hsp70-binding protein 1-like	0.918	0.906	0.817	1e-172
357469305	370	Hsp70 nucleotide exchange factor fes1 [M	0.938	0.994	0.789	1e-168
297829464	365	armadillo/beta-catenin repeat family pro	0.926	0.994	0.761	1e-161
18398480	363	protein Fes1A [Arabidopsis thaliana] gi|	0.923	0.997	0.755	1e-160

>gi|224087439|ref|XP_002308167.1| predicted protein [Populus trichocarpa] gi|222854143|gb|EEE91690.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/370 (84%), Positives = 336/370 (90%), Gaps = 1/370 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAKDGPNWDGLLKWSLAHSDGT S RNLSEEDRRWFMEAMQS++VDV+KRMKEITLVMQT
Sbjct: 1   MAKDGPNWDGLLKWSLAHSDGTSSNRNLSEEDRRWFMEAMQSKSVDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVLESQGVTP DIED+LDELQEHVE+IDMANDLHSIGGL PLLGYLKN+HAN+RAKA 
Sbjct: 61  PEQVLESQGVTPADIEDLLDELQEHVEAIDMANDLHSIGGLVPLLGYLKNTHANVRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           EVVTTIVQNNPRSQQLVMEANG EPLLSNF SDPDVTVRTKALGAISSLIRHNKPGI AF
Sbjct: 121 EVVTTIVQNNPRSQQLVMEANGFEPLLSNFTSDPDVTVRTKALGAISSLIRHNKPGIAAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RL NG+AALRDALGS +V+FQRKALNLI YLL+EN+SD S+V  LGFPR+MLHLASSED 
Sbjct: 181 RLGNGFAALRDALGSGNVRFQRKALNLIHYLLHENSSDGSIVSDLGFPRIMLHLASSEDA 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           +VREAALRGLLELAR K DG+  +L ED+E LKQ+L E + GISLMSPEDLGAAREER L
Sbjct: 241 EVREAALRGLLELARNKIDGNTGRLCEDDEILKQVLEELVNGISLMSPEDLGAAREERQL 300

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANP-ASKKSSVEQK 359
           VDSLWNACYNEPSSLRDKGLLVLPGED+PPPDVASKHFEPPLRAWAA P A K    E+K
Sbjct: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDSPPPDVASKHFEPPLRAWAARPDAGKNPGTEKK 360

Query: 360 ETPLLLGPGP 369
           + PLLLG GP
Sbjct: 361 QAPLLLGLGP 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138850|ref|XP_002322917.1| predicted protein [Populus trichocarpa] gi|222867547|gb|EEF04678.1| predicted protein [Populus trichocarpa]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/387 (80%), Positives = 345/387 (89%), Gaps = 1/387 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAK+GPNWDGLLKWSLAHSDGT   RNLSEEDRRWF EAMQSQ+VDVIKRMKEITLVMQT
Sbjct: 1   MAKEGPNWDGLLKWSLAHSDGTAPNRNLSEEDRRWFTEAMQSQSVDVIKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVLESQG+TP DIE++LDELQEHVESIDMANDLHSIGGL PLLG+LKN+HA++RAKA 
Sbjct: 61  PEQVLESQGITPADIEELLDELQEHVESIDMANDLHSIGGLVPLLGFLKNTHASVRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           EVVTTIVQNNPRSQQ+VMEANG EPLLSNF SDPDVTVRTKALGAISSL+RHNKPGI AF
Sbjct: 121 EVVTTIVQNNPRSQQMVMEANGFEPLLSNFTSDPDVTVRTKALGAISSLVRHNKPGIAAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
            L NG+AALRDALGSE+V+FQRKALNLI YLL+EN+SDCS+V +LGFPR+M HLASSED 
Sbjct: 181 HLGNGFAALRDALGSENVRFQRKALNLIHYLLHENSSDCSIVSQLGFPRIMSHLASSEDA 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           +VREAALRGLLELAR K DG+  +L ED+EKLKQLL ERI GISLMSP++LGAA EE+ L
Sbjct: 241 EVREAALRGLLELARNKIDGNTGRLGEDDEKLKQLLEERINGISLMSPDELGAAMEEKQL 300

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANP-ASKKSSVEQK 359
           VD+LW+ CYNEPSSL DKGLLVLPGED+PPPDVASKHFEPPLRA AA P A+K SS E K
Sbjct: 301 VDTLWDTCYNEPSSLHDKGLLVLPGEDSPPPDVASKHFEPPLRARAARPDANKNSSTENK 360

Query: 360 ETPLLLGPGPSSEATSNQDTSMTDANG 386
           +TPLLLG GP+ EA + Q TS  + N 
Sbjct: 361 QTPLLLGLGPAPEAANVQGTSSGEVNA 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440422|ref|XP_002269511.1| PREDICTED: hsp70-binding protein 1-like [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/394 (79%), Positives = 350/394 (88%), Gaps = 5/394 (1%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAKDGP+WDGLLKWSLAHSDGTR  RNLSEE+R+WFMEAMQ+Q+VDV+KRMKEITLVMQT
Sbjct: 1   MAKDGPDWDGLLKWSLAHSDGTRPPRNLSEEERKWFMEAMQTQSVDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVLE+QGVT  DIEDMLDELQEHVESIDMANDLHSIGGL PLLGYLKNSH+ IRAKA 
Sbjct: 61  PEQVLEAQGVTSADIEDMLDELQEHVESIDMANDLHSIGGLVPLLGYLKNSHSGIRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           EV+TTIVQNNPRSQQLVMEANG EPLLSNF SDPD+TVRTKALGAI+SLIRHNKPGI AF
Sbjct: 121 EVITTIVQNNPRSQQLVMEANGFEPLLSNFTSDPDITVRTKALGAIASLIRHNKPGIAAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RLANGYAALRDALGSESV+FQRKALNLI YLL+EN+SDC+VV +LGFPR+M+HLASS+D 
Sbjct: 181 RLANGYAALRDALGSESVRFQRKALNLIHYLLHENSSDCNVVSELGFPRIMMHLASSDDS 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           +VREAALRGLLELA++K  G +  L E++EKLKQLL ERIKGISLMSPEDLGAAREERHL
Sbjct: 241 EVREAALRGLLELAQDKTSGGSDGLGEEDEKLKQLLQERIKGISLMSPEDLGAAREERHL 300

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAAN-PASKKSSVEQK 359
           VDSLWNACYNEPSSLR +GL+VLPG+DAPPPDVASKHFEPPLRAWAAN  A++    E+K
Sbjct: 301 VDSLWNACYNEPSSLRGEGLVVLPGDDAPPPDVASKHFEPPLRAWAANQEANRAPGTEKK 360

Query: 360 E-TPLLLGPGPSSEATSNQDTSMTDANGQTNASQ 392
           E  PLLLG  P    T +  +S   ++G  +A Q
Sbjct: 361 EAAPLLLGFSPQQPETPHVHSS---SSGGEDAGQ 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496082|ref|XP_003516899.1| PREDICTED: hsp70-binding protein 1-like [Glycine max]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 310/386 (80%), Positives = 342/386 (88%), Gaps = 2/386 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAK+GPNWDGLLKWS+AHSDGTR TRNLSEEDRRWFMEAMQSQT+DV+KRMKEITLVMQT
Sbjct: 1   MAKEGPNWDGLLKWSIAHSDGTRPTRNLSEEDRRWFMEAMQSQTIDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVL+ QGVTP DIEDMLDELQEHVESIDMANDLHSIGGL PLLGYLK+SHANIRAKA 
Sbjct: 61  PEQVLKDQGVTPADIEDMLDELQEHVESIDMANDLHSIGGLVPLLGYLKSSHANIRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           +VVTTIVQNNPRSQQLVMEANG EPL+SNF+SDPDVTVRTKALGAISSLIRHNK GI  F
Sbjct: 121 DVVTTIVQNNPRSQQLVMEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKQGITVF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RLANGYAAL+DAL SE+V+FQRKALNL  YLL+EN SDC++V++LGFPRL++HLASSED 
Sbjct: 181 RLANGYAALKDALASENVRFQRKALNLTHYLLHENNSDCNIVNELGFPRLLMHLASSEDS 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           DVREAALRGLLELAR   DG      ED+EK+KQLL ERI  ISLMS EDLG  REER L
Sbjct: 241 DVREAALRGLLELARNTQDGKDGN-EEDSEKMKQLLQERINNISLMSAEDLGVVREERQL 299

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKK-SSVEQK 359
           VDSLW+ C+NEPSSLR+KGLLVLPGEDAPPPDVASK FEPPLR+  ANP+SKK S+ E+K
Sbjct: 300 VDSLWSTCFNEPSSLREKGLLVLPGEDAPPPDVASKFFEPPLRSSTANPSSKKDSNNEKK 359

Query: 360 ETPLLLGPGPSSEATSNQDTSMTDAN 385
           E PLLLG GPS   T+NQ ++  +AN
Sbjct: 360 EIPLLLGSGPSLADTNNQGSNRENAN 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504358|ref|XP_003520963.1| PREDICTED: hsp70-binding protein 1-like [Glycine max]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/384 (78%), Positives = 337/384 (87%), Gaps = 2/384 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAK+GPNWDGLLKWS+AHSDGT  TRNLSEEDR+WFMEAMQ+QT+DV+KRMKEITLVMQT
Sbjct: 1   MAKEGPNWDGLLKWSIAHSDGTSPTRNLSEEDRKWFMEAMQAQTIDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVL+ QGVTP DIEDML+ELQEHVESIDMANDLHSIGGL PLLGYLKNSHANIRA A 
Sbjct: 61  PEQVLKDQGVTPADIEDMLEELQEHVESIDMANDLHSIGGLVPLLGYLKNSHANIRAMAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           +VVTTIVQNNPRSQQLVMEANG EPL+SNF+SDPDVTVRTKALGAISSLIRHNKPGI AF
Sbjct: 121 DVVTTIVQNNPRSQQLVMEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKPGITAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RLANGYAAL+DAL SE+V+FQRKALNLI YLL+EN SDC++V++LGFPR+++HLASSED 
Sbjct: 181 RLANGYAALKDALASENVRFQRKALNLIHYLLHENNSDCNIVNELGFPRMLMHLASSEDS 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           DVREAALRGLL+LA    DG      +D+ K+KQLL ERI  ISLMS EDLG  REER L
Sbjct: 241 DVREAALRGLLQLAHNAKDGKDGN-EKDSVKIKQLLQERINNISLMSAEDLGVVREERQL 299

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKE 360
           VDSLW+ C+NEPSSLR+KGLLVLPGED PPPDVASK+FEPPLR+  ANP+SKK   E+ E
Sbjct: 300 VDSLWSTCFNEPSSLREKGLLVLPGEDVPPPDVASKYFEPPLRSSTANPSSKKDP-EKNE 358

Query: 361 TPLLLGPGPSSEATSNQDTSMTDA 384
            PLLLG GPS   T+NQ ++  DA
Sbjct: 359 IPLLLGSGPSPTYTNNQGSNKGDA 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646284|gb|ACU23626.1| unknown [Glycine max]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/384 (77%), Positives = 333/384 (86%), Gaps = 2/384 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAK+GPNWDGLLKWS+AHSDGT  TRNLSEEDR+WFMEAMQ+QT+DV+KRMKEITLVMQT
Sbjct: 1   MAKEGPNWDGLLKWSIAHSDGTSPTRNLSEEDRKWFMEAMQAQTIDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVL+ QGVTP DIEDML+ELQEHVESIDMANDLHSIGGL PLLGYLKNSHANIRA A 
Sbjct: 61  PEQVLKDQGVTPADIEDMLEELQEHVESIDMANDLHSIGGLVPLLGYLKNSHANIRAMAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           +VVTTIVQNNPRSQQLVMEANG EPL+SNF+SDPDVTVRTKALGAISSLIRHNKPGI AF
Sbjct: 121 DVVTTIVQNNPRSQQLVMEANGFEPLISNFSSDPDVTVRTKALGAISSLIRHNKPGITAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RLANGYAAL+DAL SE+V+FQRKALNLI YLL+EN SDC++V++LGFPR+++HLASSED 
Sbjct: 181 RLANGYAALKDALASENVRFQRKALNLIHYLLHENNSDCNIVNELGFPRMLMHLASSEDS 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           DVREAALRGLL+LA    DG      +D+ K+KQLL ERI  ISLMS EDLG  REER L
Sbjct: 241 DVREAALRGLLQLAHNAKDGKDGN-EKDSVKIKQLLQERINNISLMSAEDLGVVREERQL 299

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKE 360
           VDSLW+ C+NEPSSLR+KGLLVLPGED PPPDVASK+FEPP R   ANP SKK   E+ E
Sbjct: 300 VDSLWSTCFNEPSSLREKGLLVLPGEDVPPPDVASKYFEPPFRFSTANPFSKKDP-EKNE 358

Query: 361 TPLLLGPGPSSEATSNQDTSMTDA 384
            PLLLG GP    T+NQ ++  DA
Sbjct: 359 IPLLLGSGPFPTYTNNQGSNKGDA 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448614|ref|XP_004142061.1| PREDICTED: hsp70-binding protein 1-like [Cucumis sativus] gi|449515169|ref|XP_004164622.1| PREDICTED: hsp70-binding protein 1-like [Cucumis sativus]

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 295/361 (81%), Positives = 323/361 (89%), Gaps = 1/361 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAKDGPNWDGLLKWSLAHSDGTR  RNLSEEDRRWFMEAMQ+Q++DV+KRMKEIT VMQT
Sbjct: 1   MAKDGPNWDGLLKWSLAHSDGTRPNRNLSEEDRRWFMEAMQAQSIDVVKRMKEITQVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVLE+QGV  +DIEDMLDELQEHVESIDMANDLHS+GGL P+LGYLKNSHANIRAKA 
Sbjct: 61  PEQVLEAQGVGSEDIEDMLDELQEHVESIDMANDLHSVGGLHPVLGYLKNSHANIRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           EVVTTIVQNNPRSQQLVME NGLE LL NF SDPDVT RTKALGAISSLIRHNKPGI AF
Sbjct: 121 EVVTTIVQNNPRSQQLVMELNGLESLLFNFTSDPDVTARTKALGAISSLIRHNKPGIAAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RLANGYA LRDALGSE+V+FQRKALNLI YLL+EN SDC++V++LGFPR+MLHLASS+D 
Sbjct: 181 RLANGYAGLRDALGSENVRFQRKALNLIHYLLHENTSDCNIVNELGFPRIMLHLASSDDA 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           +VREAALRGLLELA++K   +   L ED+ KLKQLL ERIK ISL+SPEDLGAA+EER L
Sbjct: 241 EVREAALRGLLELAKDKTGENGGGLGEDDGKLKQLLEERIKEISLLSPEDLGAAKEERQL 300

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKS-SVEQK 359
           VDSLWN CY EPSSLR+KGLLVLPGEDAPPPDVASKHFEPPLRAW+  P +  S   E+K
Sbjct: 301 VDSLWNTCYKEPSSLREKGLLVLPGEDAPPPDVASKHFEPPLRAWSGRPPADTSPKTEKK 360

Query: 360 E 360
           E
Sbjct: 361 E 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469305|ref|XP_003604937.1| Hsp70 nucleotide exchange factor fes1 [Medicago truncatula] gi|217073652|gb|ACJ85186.1| unknown [Medicago truncatula] gi|355505992|gb|AES87134.1| Hsp70 nucleotide exchange factor fes1 [Medicago truncatula] gi|388522035|gb|AFK49079.1| unknown [Medicago truncatula]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/371 (78%), Positives = 324/371 (87%), Gaps = 3/371 (0%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAK+GPNWDGLLKWS+A+SDGTR  RNLSEEDR+WFMEAMQ+QTVD++KRMKEITLVM+T
Sbjct: 1   MAKEGPNWDGLLKWSIANSDGTRQPRNLSEEDRKWFMEAMQAQTVDIVKRMKEITLVMKT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQ LE+QGVTP DIEDMLDELQEHVESIDMANDLH+IGGL PLL YLKN HANIRAKA 
Sbjct: 61  PEQELENQGVTPADIEDMLDELQEHVESIDMANDLHTIGGLTPLLAYLKNPHANIRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           +VVTTIVQNNP+SQQLVMEANG EPL+SNF+SDPDVT RTKALGAISSLIRHNKPG+ AF
Sbjct: 121 DVVTTIVQNNPKSQQLVMEANGFEPLVSNFSSDPDVTARTKALGAISSLIRHNKPGVAAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           RLANGYAALRDAL SE+V+FQRKALNLI YLL EN+SDC++V +LG  R M+HLASS+D 
Sbjct: 181 RLANGYAALRDALTSENVRFQRKALNLIHYLLLENSSDCNIVKELGLHRTMMHLASSDDA 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           DVREAAL+ L EL R   DGS     EDNEK+KQLL ERI GISLMS EDLGA REER L
Sbjct: 241 DVREAALKSLFELTRNTKDGSDSS-PEDNEKMKQLLQERINGISLMSTEDLGAIREERLL 299

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKE 360
           VDSLW+  +NEPSSLR+KGLLVLPGEDAPPPDVASKHFE PLRA + NP SKK S  +K+
Sbjct: 300 VDSLWSTYFNEPSSLREKGLLVLPGEDAPPPDVASKHFESPLRASSGNPNSKKDSNNEKK 359

Query: 361 T--PLLLGPGP 369
              PLLLGPGP
Sbjct: 360 DAPPLLLGPGP 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829464|ref|XP_002882614.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328454|gb|EFH58873.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/369 (76%), Positives = 321/369 (86%), Gaps = 6/369 (1%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAKDGPNWDGLLKWSL+H+DGTR TR LSEEDR+WFMEAMQSQT+DV+KRMKEITLVMQT
Sbjct: 1   MAKDGPNWDGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTIDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVL   GVTP+DI+D+LDELQEHVESIDMANDLHSIGGL PLL +LKNSHANIRAKA 
Sbjct: 61  PEQVLADHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLNFLKNSHANIRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           +VV+TIVQNNPRSQ+LVME NGLE LLSNF SD D+  RT+ALGAISSLIRHNKPG+ AF
Sbjct: 121 DVVSTIVQNNPRSQELVMETNGLESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           +LANGYA LRDAL S+SV+FQRKALNL+QYLL E+ SD S+   LGFPR+M+HLASS+D 
Sbjct: 181 KLANGYAGLRDALASDSVRFQRKALNLLQYLLQEDDSDRSIATGLGFPRVMMHLASSDDA 240

Query: 241 DVREAALRGLLELAREKADGS-AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERH 299
           ++REAALRGLLELAREK DGS +  + + +EKL+QLL ERIKGISLMS EDL   +EER 
Sbjct: 241 EIREAALRGLLELAREKNDGSGSSSIDKSDEKLRQLLEERIKGISLMSQEDLETVKEERQ 300

Query: 300 LVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQK 359
           LVDSLW+ CYNEPSSLR+KGLLVLPGED  PPDVASK FEPPLRA AAN    +++ E+K
Sbjct: 301 LVDSLWSICYNEPSSLREKGLLVLPGEDELPPDVASKLFEPPLRATAAN----RNATEKK 356

Query: 360 ETPL-LLGP 367
           + P+ LLGP
Sbjct: 357 DEPMKLLGP 365

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398480|ref|NP_566349.1| protein Fes1A [Arabidopsis thaliana] gi|28393837|gb|AAO42326.1| unknown protein [Arabidopsis thaliana] gi|28973369|gb|AAO64009.1| unknown protein [Arabidopsis thaliana] gi|332641232|gb|AEE74753.1| protein Fes1A [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/368 (75%), Positives = 320/368 (86%), Gaps = 6/368 (1%)

Query: 1   MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
           MAKDGPNWDGLLKWSL+H+DGTR TR LSEEDR+WFMEAMQSQTVDV+KRMKEITLVMQT
Sbjct: 1   MAKDGPNWDGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQT 60

Query: 61  PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
           PEQVL   GVTP+DI+D+LDELQEHVESIDMANDLHSIGGL PLL +LKNSHANIRAKA 
Sbjct: 61  PEQVLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAA 120

Query: 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
           +VV+TIVQNNPRSQ+LVME N LE LLSNF SD D+  RT+ALGAISSLIRHNKPG+ AF
Sbjct: 121 DVVSTIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAF 180

Query: 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
           +LANGYA LRDAL S+SV+FQRKALNL+QYLL E+ SD S+   LGFPR+M+HLASS+D 
Sbjct: 181 KLANGYAGLRDALASDSVRFQRKALNLLQYLLQEDDSDRSIATGLGFPRVMMHLASSDDA 240

Query: 241 DVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
           ++REAALRGLLEL+REK DGS+  + + +EKL+QLL ERIKGI+LMS EDL   +EER L
Sbjct: 241 EIREAALRGLLELSREKNDGSS-SIDKSDEKLRQLLEERIKGITLMSQEDLETVKEERQL 299

Query: 301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKE 360
           VD LW+ CYNEPSSLR+KGL+VLPGEDA PPDVASK FEPPLRA AAN    +++ E+K+
Sbjct: 300 VDLLWSICYNEPSSLREKGLVVLPGEDALPPDVASKLFEPPLRASAAN----RNATEKKD 355

Query: 361 TPL-LLGP 367
            P+ LLGP
Sbjct: 356 EPMKLLGP 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2083559	363	Fes1A "Fes1A" [Arabidopsis tha	0.923	0.997	0.720	2.2e-137
TAIR|locus:2084365	363	Fes1B "Fes1B" [Arabidopsis tha	0.926	1.0	0.634	5.8e-121
TAIR|locus:2185113	324	Fes1C "Fes1C" [Arabidopsis tha	0.803	0.972	0.648	1.7e-105
TAIR|locus:2083800	382	AT3G51980 "AT3G51980" [Arabido	0.505	0.518	0.309	2.4e-18
FB|FBgn0036306	306	CG10973 [Drosophila melanogast	0.658	0.843	0.285	1e-16
ASPGD|ASPL0000004813	218	AN6543 [Emericella nidulans (t	0.474	0.853	0.320	1.1e-16
ZFIN|ZDB-GENE-030219-55	334	hspbp1 "HSPA (heat shock 70kDa	0.599	0.703	0.28	7.2e-16
UNIPROTKB|Q2KJ77	357	HSPBP1 "HSPA (Heat shock 70kDa	0.767	0.843	0.259	8.8e-16
UNIPROTKB|F1RMR6	357	HSPBP1 "Uncharacterized protei	0.767	0.843	0.256	8.8e-16
MGI|MGI:1913495	357	Hspbp1 "HSPA (heat shock 70kDa	0.767	0.843	0.259	1.6e-15

TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
 Identities = 265/368 (72%), Positives = 306/368 (83%)

Query:     1 MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
             MAKDGPNWDGLLKWSL+H+DGTR TR LSEEDR+WFMEAMQSQTVDV+KRMKEITLVMQT
Sbjct:     1 MAKDGPNWDGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQT 60

Query:    61 PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
             PEQVL   GVTP+DI+D+LDELQEHVESIDMANDLHSIGGL PLL +LKNSHANIRAKA 
Sbjct:    61 PEQVLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAA 120

Query:   121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
             +VV+TIVQNNPRSQ+LVME N LE LLSNF SD D+  RT+ALGAISSLIRHNKPG+ AF
Sbjct:   121 DVVSTIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAF 180

Query:   181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
             +LANGYA LRDAL S+SV+FQRKALNL+QYLL E+ SD S+   LGFPR+M+HLASS+D 
Sbjct:   181 KLANGYAGLRDALASDSVRFQRKALNLLQYLLQEDDSDRSIATGLGFPRVMMHLASSDDA 240

Query:   241 DVXXXXXXXXXXXXXXKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
             ++              K DGS+  + + +EKL+QLL ERIKGI+LMS EDL   +EER L
Sbjct:   241 EIREAALRGLLELSREKNDGSS-SIDKSDEKLRQLLEERIKGITLMSQEDLETVKEERQL 299

Query:   301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKE 360
             VD LW+ CYNEPSSLR+KGL+VLPGEDA PPDVASK FEPPLRA AAN    +++ E+K+
Sbjct:   300 VDLLWSICYNEPSSLREKGLVVLPGEDALPPDVASKLFEPPLRASAAN----RNATEKKD 355

Query:   361 TPL-LLGP 367
              P+ LLGP
Sbjct:   356 EPMKLLGP 363

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 234/369 (63%), Positives = 281/369 (76%)

Query:     1 MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
             MA +GPNWDGLLKWSL+HSDG  S+  +SEEDR+WF+EAMQ+ T+D I RMK I+ +M+ 
Sbjct:     1 MANNGPNWDGLLKWSLSHSDGASSSSRISEEDRQWFVEAMQAHTIDSISRMKVISQIMKM 60

Query:    61 PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
             PEQVLE+QGVTP D+E ML ELQEHVESID+ANDLHSIGGL PLL YLKNS+A IRAK+ 
Sbjct:    61 PEQVLEAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSA 120

Query:   121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
             +V+TT+VQNNPRSQQLVMEANG EPLL+NF +DPD+ VRTKALGAISSLIR+N+PGI AF
Sbjct:   121 DVLTTVVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAF 180

Query:   181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
             RLANGYA LRDAL S++V+FQRKALNL+ YLL E+ SDC +V  LGFPR+M+HLAS++D 
Sbjct:   181 RLANGYAGLRDALVSDTVRFQRKALNLLHYLLQESNSDCKIVRDLGFPRIMIHLASNQDF 240

Query:   241 DVXXXXXXXXXXXXXXKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300
             +V              +   S   L   +  L+QLL ER + I +MS EDL AAREER L
Sbjct:   241 EVREFALRGLLELAREE---SVRNLDRGDVNLRQLLEERTRRIIVMSDEDLCAAREERQL 297

Query:   301 VDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAANPASKKSSVEQKE 360
             VDSLW  CY+EPS LR++GL+ LP +D   PDV    FEPPLRAWAA    +     +  
Sbjct:   298 VDSLWTVCYDEPSLLRERGLVYLPSDDELAPDVVRDRFEPPLRAWAAR---RHDETSESP 354

Query:   361 TPLLLGPGP 369
              PLLLGP P
Sbjct:   355 VPLLLGPAP 363

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 210/324 (64%), Positives = 249/324 (76%)

Query:     1 MAKDGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT 60
             MAKDGPNWDGLLKWSL+HSDGTR T  LSEEDR+WF EAMQSQTVDV+KR+KEIT V+QT
Sbjct:     1 MAKDGPNWDGLLKWSLSHSDGTRPTCQLSEEDRKWFAEAMQSQTVDVVKRLKEITQVLQT 60

Query:    61 PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAG 120
             P+QVLE+  VTPQDIE +LDELQEHVESIDMANDLHS+GGL PLLGYLKNS+ANIRAK+ 
Sbjct:    61 PQQVLEAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSA 120

Query:   121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180
             +VV+TIV+NNPRSQ+ VMEANGLE LL  F SD D+  RT+ALGAISSLIR+NKPGI  F
Sbjct:   121 DVVSTIVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGF 180

Query:   181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240
             R+ANGY+ L+DAL ++SV+FQRKALNL+ YLL EN SD  +  + G   LM+HL SS D 
Sbjct:   181 RIANGYSGLKDALETDSVRFQRKALNLLHYLLQENDSDSDIAIEFGLHHLMMHLVSSFDA 240

Query:   241 DVXXXXXXXXXXXXXXKADGSAI--KLAEDNEKLKQLLGERIKGIS-------LMSPEDL 291
             DV              + D S     + + +E+L+Q+L +RIK IS        MS EDL
Sbjct:   241 DVREAALRGLLELVKARKDCSTCGSSIVKGDERLRQILKDRIKAISRVKAMSLFMSQEDL 300

Query:   292 GAAREERHLVDSLWNACYNEPSSL 315
              AA+EER L+DSLW   +NEPSSL
Sbjct:   301 SAAKEERQLLDSLWTTIFNEPSSL 324

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 64/207 (30%), Positives = 109/207 (52%)

Query:     9 DGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITL-----VMQTPEQ 63
             DG+L W++ HSD   + +  +++  +  ++ +Q + +++ + ++++ +     +MQ    
Sbjct:    66 DGMLHWAIGHSDPA-TLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNAKLMQIAID 124

Query:    64 VLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVV 123
              L +  ++ +D    L EL   VE ID ANDL   GGL  + G L +    +R  A  V+
Sbjct:   125 DLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEVRKLAAWVL 184

Query:   124 TTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 183
                 QNNP  Q+ V+E   L  L+    +        KAL A+S+LIR+N  G + F  A
Sbjct:   185 GKASQNNPFVQEQVLELGALTTLIK-MVNSSSTEEAVKALFAVSALIRNNIAGQDLFFAA 243

Query:   184 NGYAALRDAL--GSESVKFQRKALNLI 208
             +GY  LRD +  GS  +K +RKA+ L+
Sbjct:   244 HGYIMLRDVMNNGSLDMKLRRKAVFLV 270

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0036306 CG10973 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 79/277 (28%), Positives = 132/277 (47%)

Query:    11 LLKWSLAHSD-GTRSTRNLSEED--RRWFM-EAMQSQTVDVIKRMKEITLVMQTPEQVLE 66
             +LK+++ H D    +   L   D  R  F+  A+ + TVD    +K   +++ + E   +
Sbjct:    16 VLKYTVQHHDPNPEAAPKLETPDPERAQFLANALNAMTVDAAAALKAALVILNSEESSTD 75

Query:    67 SQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTI 126
              Q      IE  LD ++ H++ ID A  L  +GG A LL Y+ +S + +R  A   V  +
Sbjct:    76 DQ------IES-LDVIRSHIDDIDNAITLVKLGGTATLLRYITHSDSEVRESALNTVAEV 128

Query:   127 VQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 185
              QNN   Q  ++    L  L  N + S+P+ TVR  +L AISSLIR+ +PG + F+   G
Sbjct:   129 AQNNVFCQNALINDKFLPALAKNLSHSNPN-TVRC-SLYAISSLIRNFQPGYDEFKRIKG 186

Query:   186 YAALRDALGSESVKFQRKALNLIQYL--LNENASDCSVVDKLGFPRLMLHLASSEDPDVX 243
               +L   L S +     K   LI  L  + ++  D  V +++ FP L+ +L   +D D+ 
Sbjct:   187 IRSLIPCLKSTNTNVYVKTAFLIASLTSIEKSVRDDFVKEEV-FPVLVENLKPVDDFDIK 245

Query:   244 XXXXXXXXXXXXXKADG--SAIKLAEDNEKLKQLLGE 278
                          +++   S  K  E   KL+Q++ +
Sbjct:   246 QETTLFALSSLSRESELKLSTEKREEILSKLQQIISK 282

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 65/203 (32%), Positives = 101/203 (49%)

Query:     6 PNWDGLLKWSLAHSDGTRST----RNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTP 61
             PN + LLKW + +S  T+ T     N S+  R      M S    +     E  L M+  
Sbjct:     3 PNMNNLLKWGIQNSTATQQTSDSNNNASQAPRSNITPEMLSA---LFGGPSEADL-MKAA 58

Query:    62 EQVLESQGVTPQDIEDML---DELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAK 118
              + L S  V   D+E+ L   D  ++ +ESID AN+L  +G   PL+  LK+   ++R  
Sbjct:    59 MEALRSDEV---DLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRM 115

Query:   119 AGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178
             A   + T VQNN ++Q  ++  N +  L+S    DP   VR KA+ A+SS +R+ +PG  
Sbjct:   116 AAWCIGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPGTN 175

Query:   179 AF--RLANGYAALR-DALGSESV 198
                  L  GYA+ + DA   +++
Sbjct:   176 ELVKHLPGGYASGKVDAADMDTI 198

GO:0005634 "nucleus" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

ZFIN|ZDB-GENE-030219-55 hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Danio rerio (taxid:7955)]

 Score = 217 (81.4 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 70/250 (28%), Positives = 125/250 (50%)

Query:     7 NWDGLLKWSL---AHSDGTRSTRNLSEEDRRWFMEAMQSQT----VDVIKRMKEITLVMQ 59
             N  G+L+ ++   + SDG      +++E R  F+    S+     +D +++MK    V++
Sbjct:    13 NLQGVLQMAVEAGSASDGPSPLEPMTQE-RMDFLRGALSEVCKGQMDEVEQMKRCLEVLK 71

Query:    60 TP---EQVLESQGVTPQDI---EDMLDELQEHVESIDMANDLHSIGGLAPLLGY-LKNSH 112
             T    ++ +E +    Q+    E+ L+ L E  E++D A DL  +GGL   L   L ++ 
Sbjct:    72 TDGCKDREVEGEEEEEQEDDEREEALEMLSELCENLDNARDLMKLGGLDLCLSRCLCHTE 131

Query:   113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 172
             A IR +A +++ +  QN P  Q  ++    L  LL    +DP  TVR KAL A+S L+R 
Sbjct:   132 AGIRWRAAQLIASSAQNMPEVQFYLLNQGALLTLLQLADNDPHSTVRVKALYAVSCLVRE 191

Query:   173 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML 232
              + G++ F   +G++ L   + S+S K + K+  L+  LLN +      V  +G  + ++
Sbjct:   192 QEAGLKDFLSHDGFSVLMRGMQSDSEKLRTKSAFLLLNLLNSHPEHKDTVLSMGMVQQLV 251

Query:   233 HLASSEDPDV 242
              +  S    V
Sbjct:   252 SVLRSPHSSV 261

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2KJ77 HSPBP1 "HSPA (Heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 8.8e-16, P = 8.8e-16
 Identities = 82/316 (25%), Positives = 140/316 (44%)

Query:     7 NWDGLLKWSLA--HSDGTRSTRNLSEEDRRWFMEAMQSQ---TVDVIKRMKEITLVMQ-- 59
             N  GLL+ ++     +       +SEE R+W  EAM +      + +++MK    V+   
Sbjct:    42 NLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQP 101

Query:    60 TPEQVLESQGVTPQ-DIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRA 117
             TP    E++  T Q + E  L+ L +  E++D A D   + G+  L+G YL+   A +R 
Sbjct:   102 TPSSAGEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRW 161

Query:   118 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177
             +A +++ T  QN    Q+ V+    L  LL     DP   VR KAL AIS L+R  + G+
Sbjct:   162 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDAVRVKALFAISCLVREQEAGL 221

Query:   178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 237
               F   +G++ L  A+  +  K + K+  L+Q LL  +      +  +G  + ++ L  +
Sbjct:   222 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCAMGMVQQLVALVRT 281

Query:   238 EDPDVXXXXXXXXXXXXXXKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREE 297
             E                     G   +  E    L++LL  R +   L   E+    +EE
Sbjct:   282 EHSPFHEHVLGALCSLVTDFPQGVR-ECREPELGLEELLRHRCQ--LLQQHEEY---QEE 335

Query:   298 RHLVDSLWNACYNEPS 313
                 + L   C++ P+
Sbjct:   336 LEFCEKLLQTCFSTPT 351

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|F1RMR6 HSPBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 8.8e-16, P = 8.8e-16
 Identities = 81/316 (25%), Positives = 140/316 (44%)

Query:     7 NWDGLLKWSLA--HSDGTRSTRNLSEEDRRWFMEAMQSQ---TVDVIKRMKEITLVMQ-- 59
             N  GLL+ ++     +       +SEE R+W  EAM +      + +++MK    V+   
Sbjct:    42 NLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQP 101

Query:    60 TPEQVLESQ-GVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRA 117
             TP    E++     Q+ E  L+ L +  E++D A D   + G+  L+G YL+   A +R 
Sbjct:   102 TPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRW 161

Query:   118 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177
             +A +++ T  QN    Q+ V+    L  LL     DP  +VR KAL AIS L+R  + G+
Sbjct:   162 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGL 221

Query:   178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 237
               F   +G++ L  A+  +  K + K+  L+Q LL  +      +  +G  + ++ L  +
Sbjct:   222 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT 281

Query:   238 EDPDVXXXXXXXXXXXXXXKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREE 297
             E                     G   +  E    L++LL  R +   L   E+    +EE
Sbjct:   282 EHSPFHEHVLGALCSLVTDFPQGVR-ECREPELGLEELLRHRCQ--LLQQREEY---QEE 335

Query:   298 RHLVDSLWNACYNEPS 313
                 + L   C++ P+
Sbjct:   336 LEFCEKLLQTCFSTPT 351

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

MGI|MGI:1913495 Hspbp1 "HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1" [Mus musculus (taxid:10090)]

 Score = 216 (81.1 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 82/316 (25%), Positives = 140/316 (44%)

Query:     7 NWDGLLKWSLA--HSDGTRSTRNLSEEDRRWFMEAMQSQ---TVDVIKRMKEITLVMQ-- 59
             N  GLL+ ++     +       +SEE R+W  EAM +      + +++MK    V+   
Sbjct:    42 NLQGLLQMAITAGSQEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQA 101

Query:    60 TPEQVLESQGVTPQ-DIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRA 117
             TP    E++  T Q + E  L+ L +  E++D A D   + G+  L+G YL+   A +R 
Sbjct:   102 TPAMAGEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRW 161

Query:   118 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177
             +A +++ T  QN    Q+ V+    L  LL     D   TVR KAL AIS L+R  + G+
Sbjct:   162 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGL 221

Query:   178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 237
               F   +G++ L  A+  +  K + K+  L+Q LL  +      +  +G  + ++ L  +
Sbjct:   222 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT 281

Query:   238 EDPDVXXXXXXXXXXXXXXKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREE 297
             E                     G   +  E    L++LL  R +   L   E+    +EE
Sbjct:   282 EHSPFHEHVLGALCSLVTDFPQGVR-ECREPELGLEELLRHRCQ--LLQQREEY---QEE 335

Query:   298 RHLVDSLWNACYNEPS 313
                 + L   C++ P+
Sbjct:   336 LEFCEKLLQTCFSSPT 351

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.998.1 hypothetical protein (370 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.001

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 135 QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG 194
           + V++A GL  L+S  +S  D  V+ +A  A+S+L   N   I+A   A G  AL   L 
Sbjct: 1   EAVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 195 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
           SE  +  + AL  ++ L      +  +V + G    +++L  S + D+++ A   L  LA
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 255 R 255
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GGL  L+  L +S  N++ +A   ++ +   N  + Q V+EA GL  L+       D  V
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV-QLLKSEDEEV 65

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI 208
              AL A+ +L    +        A G   L + L S +   Q+ A   +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 237
           EA   A G  AL   L S     QR+A   +  L   N  +   V + G    ++ L  S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 238 EDPDVREAALRGLLELAREKADGS-AIKLAEDNEKLKQLLGERIKGI 283
           ED +V +AAL  L  LA    D    +  A    KL  LL    + I
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI 107

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GGL  L+  LK+    +   A   +  +      ++ +V+EA G+  L+ N     +  +
Sbjct: 49  GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV-NLLDSSNEDI 107

Query: 159 RTKALGAISSLIR 171
           +  A GA+S+L  
Sbjct: 108 QKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 27/102 (26%), Positives = 52/102 (50%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L+  L + +++ +A A  ++  ++     S   V++A  ++ LL       +V+V
Sbjct: 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKF 200
           R +A GA+ +L   +K   +A   A G  AL +A  + S +F
Sbjct: 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF 290

Length = 2102

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 21/108 (19%)

Query: 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQR 202
           LE LL    SDPD  VR  A  A+                     AL + L     + +R
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGE-----------LGDPEALPALLELLKDPDPEVRR 49

Query: 203 KALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 250
            A   +  L +  A           P L+  L   +D  VR AA   L
Sbjct: 50  AAAEALGKLGDPEA----------LPALLELLQDDDDAVVRAAAASAL 87

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.79
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.77
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.73
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.61
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.59
PF08609	92	Fes1: Nucleotide exchange factor Fes1; InterPro: I	99.59
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.53
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.46
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.44
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.22
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.16
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.11
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.03
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.98
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.89
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.85
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.84
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.73
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.69
PRK09687	280	putative lyase; Provisional	98.62
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.45
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.34
PRK09687	280	putative lyase; Provisional	98.33
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.32
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.28
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.21
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.2
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.18
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.06
PF08045	257	CDC14: Cell division control protein 14, SIN compo	98.04
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.91
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	97.86
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.86
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.86
PF05536	543	Neurochondrin: Neurochondrin	97.84
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.84
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.83
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.8
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.8
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.79
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.78
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.77
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.68
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.65
PTZ00429	746	beta-adaptin; Provisional	97.64
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.59
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.59
PF05536	543	Neurochondrin: Neurochondrin	97.48
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	97.48
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.42
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.42
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.37
PTZ00429	746	beta-adaptin; Provisional	97.34
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.33
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.3
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.28
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.28
COG5369	743	Uncharacterized conserved protein [Function unknow	97.27
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.22
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.22
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.21
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.16
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.15
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.14
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.05
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.05
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.03
PF05004	309	IFRD: Interferon-related developmental regulator (	96.97
TIGR02270	410	conserved hypothetical protein. Members are found	96.87
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.87
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.84
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.79
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.72
KOG4646	173	consensus Uncharacterized conserved protein, conta	96.58
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.57
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.56
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.53
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	96.47
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.43
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.41
TIGR02270	410	conserved hypothetical protein. Members are found	96.38
COG5369	743	Uncharacterized conserved protein [Function unknow	96.38
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.36
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.34
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.33
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.23
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.18
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.15
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.04
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.96
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.87
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.79
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.78
KOG2734	536	consensus Uncharacterized conserved protein [Funct	95.78
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	95.71
KOG3036	293	consensus Protein involved in cell differentiation	95.68
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.65
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.55
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.53
KOG3678	832	consensus SARM protein (with sterile alpha and arm	95.52
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.45
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.39
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.37
KOG2734	536	consensus Uncharacterized conserved protein [Funct	95.21
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.01
KOG1242	569	consensus Protein containing adaptin N-terminal re	94.99
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.97
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.93
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.85
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.79
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.79
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.72
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.71
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	94.66
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.61
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.52
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.48
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.39
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.37
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	94.33
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.24
KOG2025	892	consensus Chromosome condensation complex Condensi	94.14
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.09
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.9
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	93.88
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.79
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	93.78
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.78
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.77
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.76
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.73
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.73
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	93.69
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	93.57
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.47
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	93.43
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.34
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	93.32
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.15
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	92.98
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.92
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	92.8
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.7
KOG2956	516	consensus CLIP-associating protein [General functi	92.66
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.65
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.3
KOG0212	675	consensus Uncharacterized conserved protein [Funct	92.23
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.2
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	92.18
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.14
cd03561	133	VHS VHS domain family; The VHS domain is present i	91.91
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.91
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	91.91
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	91.85
KOG0212	675	consensus Uncharacterized conserved protein [Funct	91.66
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.64
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.53
KOG1242	569	consensus Protein containing adaptin N-terminal re	91.25
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	91.12
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.07
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.06
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	91.05
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	91.0
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	90.97
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.91
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.88
KOG2973	353	consensus Uncharacterized conserved protein [Funct	90.76
KOG2025	892	consensus Chromosome condensation complex Condensi	90.07
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	89.6
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.48
KOG3036	293	consensus Protein involved in cell differentiation	89.42
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	89.41
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	89.17
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	89.03
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.0
COG5098	1128	Chromosome condensation complex Condensin, subunit	88.95
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	88.84
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	88.82
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	88.79
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.67
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	88.65
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	88.62
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.61
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	88.6
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	88.3
PF05004	309	IFRD: Interferon-related developmental regulator (	87.99
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	87.99
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	87.84
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.84
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.52
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.5
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	87.33
KOG2153	704	consensus Protein involved in the nuclear export o	87.18
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	87.18
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	87.13
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	86.83
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.55
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	86.37
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	86.07
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	85.56
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	85.51
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	85.37
COG5116	926	RPN2 26S proteasome regulatory complex component [	85.28
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	85.25
KOG2973	353	consensus Uncharacterized conserved protein [Funct	85.03
KOG2062	929	consensus 26S proteasome regulatory complex, subun	85.0
KOG2933	334	consensus Uncharacterized conserved protein [Funct	84.99
COG5116	926	RPN2 26S proteasome regulatory complex component [	84.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	84.77
KOG2032	533	consensus Uncharacterized conserved protein [Funct	84.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	84.73
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	84.56
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	83.98
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	83.61
KOG2062	929	consensus 26S proteasome regulatory complex, subun	83.6
COG5098	1128	Chromosome condensation complex Condensin, subunit	83.48
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	83.34
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	83.25
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	83.18
KOG2032	533	consensus Uncharacterized conserved protein [Funct	82.65
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	82.64
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	82.5
KOG1243	690	consensus Protein kinase [General function predict	82.46
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	82.44
KOG0414	1251	consensus Chromosome condensation complex Condensi	81.98
KOG1243	690	consensus Protein kinase [General function predict	81.31
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	81.24
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	80.81
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	80.73
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	80.6
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	80.02

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-51  Score=400.65  Aligned_cols=313  Identities=50%  Similarity=0.673  Sum_probs=292.9

Q ss_pred             CCCCC------CChHHHHHHHHhcC--CCCCCCCCCC-------------HHHHHHHHHHHhhCC---ccHHHHHHHHHH
Q 016280            1 MAKDG------PNWDGLLKWSLAHS--DGTRSTRNLS-------------EEDRRWFMEAMQSQT---VDVIKRMKEITL   56 (392)
Q Consensus         1 ~~~~~------~~~~gLLkwsi~~s--d~~~~~~~~s-------------~E~~~~L~~Al~~~~---~D~~~~mk~~~~   56 (392)
                      |+.+|      ++|+|+++|++.++  +|+.+...++             +||++|+.++|...+   .|.+++||.+..
T Consensus         1 ~~~~G~~~~~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~   80 (342)
T KOG2160|consen    1 MSIEGGSHVRPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLKDEKEDRKWLQELMQAHTEDQKDFVEDMKVISD   80 (342)
T ss_pred             CCCCCcccccCccccchhhcccccccccCCCchhhhccchhhhhhhccCcccchHHHHHHHHHhhhhhhhhcccchhHHH
Confidence            66777      99999999999999  7888888888             999999999999986   888999999999


Q ss_pred             HhcC-cHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 016280           57 VMQT-PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ  135 (392)
Q Consensus        57 ~l~~-~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~  135 (392)
                      +|+. |...+++.+.++++++++|++|++|||+||||++|+++|||.+++.+|++++++||+.|+|+||+++||||++|+
T Consensus        81 ~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe  160 (342)
T KOG2160|consen   81 VMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQE  160 (342)
T ss_pred             HHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9988 777788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhh
Q 016280          136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~  213 (392)
                      .|++.|++++|+.+|.++.+.++|+||+||||+++|++++++..|...+|+.+|..+|++  .+.++|+||++++++|+.
T Consensus       161 ~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~  240 (342)
T KOG2160|consen  161 QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ  240 (342)
T ss_pred             HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999998889999999999999999999999999999999999999999  679999999999999999


Q ss_pred             cCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHH
Q 016280          214 ENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGA  293 (392)
Q Consensus       214 ~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~  293 (392)
                      .+++..+.+...|+...++.+....+.+++|+++.++..+........ ++ ..+...+++.|+++++.++     ++.+
T Consensus       241 ~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~-~~-~~~~~~l~e~l~~~~q~~~-----~~~~  313 (342)
T KOG2160|consen  241 EDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK-EL-FVSLLNLEELLKSLIQIIS-----DHAA  313 (342)
T ss_pred             hhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc-hh-hhhhhhHHHHHHHHHHHHH-----HHHH
Confidence            999999999999999999999999999999999999999888776443 34 6778889999999999888     6789


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccccce
Q 016280          294 AREERHLVDSLWNACYNEPSSLRDKGL  320 (392)
Q Consensus       294 ~~ee~~~~~~L~~~~f~~~~~~~~~~~  320 (392)
                      ++++.+||+.+|.+||..|+.+|+.+.
T Consensus       314 ~~~e~~l~~~l~~~~~e~~~~~~~~~~  340 (342)
T KOG2160|consen  314 LEEERQLVNSLWEICGEVPSILRKLLG  340 (342)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHhc
Confidence            999999999999999999999998753

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.1e-27  Score=241.61  Aligned_cols=254  Identities=18%  Similarity=0.224  Sum_probs=222.0

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      .+.-..+|-..|.++.. ..+..+.+++.|.++.++.||.+++..|+++|.|+||+++.+.|.+++.++++|++++|+.+
T Consensus       123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~  202 (514)
T KOG0166|consen  123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL  202 (514)
T ss_pred             ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence            34445677788888776 44788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.........+.++|+||++|||..|....-.....+++|..++++.|..+...|||+|+||+.+.++..+.+++.|+++
T Consensus       203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~  282 (514)
T KOG0166|consen  203 LNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP  282 (514)
T ss_pred             hccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence            88765568999999999999999866665555788999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-HHHh-----------hhcCCChhhHHHHHH
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-ERIK-----------GISLMSPEDLGAARE  296 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-~~~~-----------~i~~~~~ed~~~~~e  296 (392)
                      .|+.+|.+....++..||++++|++++++.++...+ .+.+..|..++. +..+           .|..++.++++++.+
T Consensus       283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid  362 (514)
T KOG0166|consen  283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID  362 (514)
T ss_pred             HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            999999999999999999999999999996543322 478888888888 3333           344478888888888


Q ss_pred             HHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          297 ERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       297 e~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      - .++..|++.+-..+..+|||++|+|+.
T Consensus       363 a-~l~p~Li~~l~~~ef~~rKEAawaIsN  390 (514)
T KOG0166|consen  363 A-NLIPVLINLLQTAEFDIRKEAAWAISN  390 (514)
T ss_pred             c-ccHHHHHHHHhccchHHHHHHHHHHHh
Confidence            6 788888888888889999999999873

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.94  E-value=1.9e-26  Score=222.65  Aligned_cols=253  Identities=17%  Similarity=0.232  Sum_probs=215.0

Q ss_pred             HHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCH
Q 016280           79 LDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDV  156 (392)
Q Consensus        79 L~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~  156 (392)
                      ...|.++...- +....+++.|++|.++.+|.+++.+||.+|.|+||++|.+.+.|++.|+++|++.+|+.+|.+. .+.
T Consensus       136 aWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i  215 (526)
T COG5064         136 AWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI  215 (526)
T ss_pred             HHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH
Confidence            34444443322 3345566789999999999999999999999999999999999999999999999999998754 456


Q ss_pred             HHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc
Q 016280          157 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  236 (392)
Q Consensus       157 ~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~  236 (392)
                      .+.+.+.|.||++||+..|....-...-.+++|.+++.+.|+.+...|||+|+||.....+..+.+++.|..++|+++|.
T Consensus       216 smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs  295 (526)
T COG5064         216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS  295 (526)
T ss_pred             HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence            89999999999999997665555556778999999999999999999999999999988888999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHcCCChh---hhhhhhhhHHHHHHHHHHHHhhhcC-----------CChhhHHHHHHHHHHHH
Q 016280          237 SEDPDVREAALRGLLELAREKADG---SAIKLAEDNEKLKQLLGERIKGISL-----------MSPEDLGAAREERHLVD  302 (392)
Q Consensus       237 ~~d~~v~E~aL~aL~~L~~~~~~~---~~~~~~~~~~~L~~~L~~~~~~i~~-----------~~~ed~~~~~ee~~~~~  302 (392)
                      +++..++..+++.+++|+++++..   +..|  +.+..|+.+|.+..+.|++           +|.+++.++.+- .++.
T Consensus       296 ~~sa~iqtPalR~vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~-nliP  372 (526)
T COG5064         296 HESAKIQTPALRSVGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDA-NLIP  372 (526)
T ss_pred             CccccccCHHHHhhcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhc-ccch
Confidence            999999999999999999999843   4455  8999999999887766655           788888888885 6778


Q ss_pred             HHHHHHhCCCccccccceeeccCCCC---CCcccc
Q 016280          303 SLWNACYNEPSSLRDKGLLVLPGEDA---PPPDVA  334 (392)
Q Consensus       303 ~L~~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~  334 (392)
                      .|.+..-.-...+|||+||+++.--.   .-||..
T Consensus       373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i  407 (526)
T COG5064         373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII  407 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence            88887777788899999999986543   445763

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.9e-18  Score=174.31  Aligned_cols=256  Identities=16%  Similarity=0.175  Sum_probs=204.5

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +++....+...+..+...-.+  -+..+..|.++.++.+|. +.++.+|..|+|+|.++|..+...-+.|++.|++|.|+
T Consensus        79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi  158 (514)
T KOG0166|consen   79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI  158 (514)
T ss_pred             CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence            445566777788877776654  455556699999999996 56799999999999999999888888899999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV-KFQRKALNLIQYLLNENASDCSVVDKLG  226 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~-kl~~kA~~lLs~L~~~~~~~~~~l~~~G  226 (392)
                      +++.+ ++..|+..|+|||+|++.+.+.....++.+|+++.|..++...+. .+.+.+.|+|++||.+.......-.-..
T Consensus       159 ~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~  237 (514)
T KOG0166|consen  159 QLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP  237 (514)
T ss_pred             HHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence            99887 688999999999999999999889999999999999999988764 8999999999999987644333344457


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHHHh-----------hhcCCChhhHHHH
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIK-----------GISLMSPEDLGAA  294 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~~~-----------~i~~~~~ed~~~~  294 (392)
                      +++.|..|+.+.|.++..-|+.||..|+.+.+..+.-.+ .+...+|..+|.+.--           .|-.++.++-+.+
T Consensus       238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v  317 (514)
T KOG0166|consen  238 ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV  317 (514)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence            899999999999999999999999999988885422111 3566777777765432           2333666665555


Q ss_pred             HHHHHHHHHHHHHHhCCCcc-ccccceeeccCCCC
Q 016280          295 REERHLVDSLWNACYNEPSS-LRDKGLLVLPGEDA  328 (392)
Q Consensus       295 ~ee~~~~~~L~~~~f~~~~~-~~~~~~~~~~~~~~  328 (392)
                      ..- .....|....++.+.. ||||++|+||.=-+
T Consensus       318 i~~-~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  318 INS-GALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             Hhc-ChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            553 5678888888855544 99999999997443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.77  E-value=1.8e-17  Score=191.31  Aligned_cols=250  Identities=16%  Similarity=0.160  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP  154 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~  154 (392)
                      ++.+.+.|..++.|+.++.-|...|++++|+.+|.+.+.++|..++|+|..++.++...++.|.+.|+++.|+++|.++ 
T Consensus       380 qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-  458 (2102)
T PLN03200        380 QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-  458 (2102)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-
Confidence            4778888999999999999999999999999999999999999999999999999899999999999999999999984 


Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL  234 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L  234 (392)
                      +..++..|+++|++++.+++.....++++||++.|+++|.+++.++|..|+|+|.+|+.+.+..+..+.+.|+++.|+++
T Consensus       459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L  538 (2102)
T PLN03200        459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL  538 (2102)
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence            68999999999999999888888899999999999999999999999999999999998644445556688999999999


Q ss_pred             hcCCChHHHHHHHHHHHHHHcCCChhhh----hhhhhhHHHHHHHHHHHHhhhcC-CChhhH-HHHHHHHHHHHHHHHHH
Q 016280          235 ASSEDPDVREAALRGLLELAREKADGSA----IKLAEDNEKLKQLLGERIKGISL-MSPEDL-GAAREERHLVDSLWNAC  308 (392)
Q Consensus       235 L~~~d~~v~E~aL~aL~~L~~~~~~~~~----~~~~~~~~~L~~~L~~~~~~i~~-~~~ed~-~~~~ee~~~~~~L~~~~  308 (392)
                      |++++..+++.|+.+|.+|+.+......    ..+.+.....+...-.-+..|-. .+.+|. ........-++.|....
T Consensus       539 L~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL  618 (2102)
T PLN03200        539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL  618 (2102)
T ss_pred             HhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence            9999999999999999999876653321    11122222222221112222211 111110 00011124567888888


Q ss_pred             hCCCccccccceeeccC
Q 016280          309 YNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       309 f~~~~~~~~~~~~~~~~  325 (392)
                      -++...++++++|+|..
T Consensus       619 ~sgs~~ikk~Aa~iLsn  635 (2102)
T PLN03200        619 SSSKEETQEKAASVLAD  635 (2102)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            88888899998888744

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.73  E-value=2.3e-16  Score=182.20  Aligned_cols=176  Identities=16%  Similarity=0.124  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +.+.++.+...|.+++.. .++...+.+.||+++|+.+|.+++..+|..|+|+|++++..|+..+..|++.|++|+|+++
T Consensus       417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L  496 (2102)
T PLN03200        417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL  496 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            467888999999999965 5778899999999999999999999999999999999999999888999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      |.+ ++..++..|+|||+|++.+.+..+..+...|+++.|+.+|.+.+.+.|..|+|+|.+|+......        .++
T Consensus       497 L~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~--------~I~  567 (2102)
T PLN03200        497 LET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA--------TIS  567 (2102)
T ss_pred             HcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh--------HHH
Confidence            987 47899999999999999875555555667899999999999999999999999999998643221        225


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      .++.+|.+++..++.+++++|.++..
T Consensus       568 ~Lv~LLlsdd~~~~~~aL~vLgnIls  593 (2102)
T PLN03200        568 QLTALLLGDLPESKVHVLDVLGHVLS  593 (2102)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHh
Confidence            55555555555666666655555543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.61  E-value=6.2e-15  Score=143.32  Aligned_cols=188  Identities=20%  Similarity=0.192  Sum_probs=167.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCCC-ChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           70 VTPQDIEDMLDELQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iD-nA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      .++|-+.+|...+.++++-.. ....+.+.|....|+.+|.|++..|+.-|...+|+++..+..--+.++.+|+++.+..
T Consensus       255 ~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~  334 (526)
T COG5064         255 RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRS  334 (526)
T ss_pred             cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHH
Confidence            467888999999999998664 4566778899999999999999999999999999999987755566889999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC---CcchHHHHhc
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN---ASDCSVVDKL  225 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~---~~~~~~l~~~  225 (392)
                      +|.+. ...+|+.|.|.||++.-++....+++++.+-+|+|+++|.+-+-++|..|||++++...+.   |.....+++.
T Consensus       335 lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q  413 (526)
T COG5064         335 LLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ  413 (526)
T ss_pred             HhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc
Confidence            98874 4599999999999999999999999999999999999999999999999999999998663   3446788999


Q ss_pred             CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          226 GFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      |+|+.|..+|...+-.+.+.+|.++.++.....
T Consensus       414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge  446 (526)
T COG5064         414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGE  446 (526)
T ss_pred             cchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence            999999999999898899999999999887665

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1e-14  Score=142.77  Aligned_cols=241  Identities=17%  Similarity=0.178  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC--CHHHHHHhhC
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFA  151 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g--~l~~Ll~LL~  151 (392)
                      ..-.++..|..+.+.-+|.+.++..||+|.|+.+|.+++..+|.+++.+|++++-. ...+..+.+.+  .++.|+++++
T Consensus       183 vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd  261 (550)
T KOG4224|consen  183 VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMD  261 (550)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHh
Confidence            34568889999999999999999999999999999999999999999999999975 45667777877  8999999976


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM  231 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L  231 (392)
                      + .++.++..|..||.++... ..-+..++++|++|.++++|+++.-++-...++.|+++.- .+.+...+.+.|+++.|
T Consensus       262 ~-~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pL  338 (550)
T KOG4224|consen  262 D-GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPL  338 (550)
T ss_pred             C-CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHH
Confidence            6 5789999999999999865 4567788899999999999999988888888999999986 46777788999999999


Q ss_pred             HHhhcCCC-hHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHH-------HHhh---hcCCChhhHHHHHHHHH
Q 016280          232 LHLASSED-PDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGE-------RIKG---ISLMSPEDLGAAREERH  299 (392)
Q Consensus       232 v~LL~~~d-~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~-------~~~~---i~~~~~ed~~~~~ee~~  299 (392)
                      |.+|+-.| ..+|-+|..+|.+|+..........+ .++-++|++++..       ++..   +-.++.+|.+++.+- .
T Consensus       339 VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~-g  417 (550)
T KOG4224|consen  339 VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDS-G  417 (550)
T ss_pred             HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhc-C
Confidence            99999655 55999999999999885543222211 3566777777652       2221   111566666555553 6


Q ss_pred             HHHHHHHHHhCCCccccccc
Q 016280          300 LVDSLWNACYNEPSSLRDKG  319 (392)
Q Consensus       300 ~~~~L~~~~f~~~~~~~~~~  319 (392)
                      +|+-|+.-.|.+.-++|..+
T Consensus       418 i~~iLIp~t~s~s~Ev~gNa  437 (550)
T KOG4224|consen  418 IIPILIPWTGSESEEVRGNA  437 (550)
T ss_pred             CcceeecccCccchhhcccH
Confidence            78888888888888888763

>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity

Probab=99.59  E-value=1.8e-15  Score=123.31  Aligned_cols=84  Identities=39%  Similarity=0.495  Sum_probs=64.2

Q ss_pred             CCChHHHHHHHHhcCCC---CCCCC--CCCHHHHHHHHHHHhhC--CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHH
Q 016280            5 GPNWDGLLKWSLAHSDG---TRSTR--NLSEEDRRWFMEAMQSQ--TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIED   77 (392)
Q Consensus         5 ~~~~~gLLkwsi~~sd~---~~~~~--~~s~E~~~~L~~Al~~~--~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~   77 (392)
                      .++++|||||||+||..   +.++.  .-.+++++|..++|...  .++++++||+++.++.++       +.+.|+++.
T Consensus         2 ~~~l~~LLkWsI~ns~~~~~~~~~~~~~~~~~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~-------~~t~edk~~   74 (92)
T PF08609_consen    2 DPNLNGLLKWSIENSTTSASDAPPSAEQPDEERRQLDPEALDALFGGPSDAELMKEAMEVLEDP-------EVTLEDKLI   74 (92)
T ss_pred             CHHHHHHHHHHHHcCCCCccccccCcCCchhhhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCC-------CCCHHHHHH
Confidence            36899999999999942   22221  22234566666665553  488999999999988764       468899999


Q ss_pred             HHHHHHHhhcCCCChHHH
Q 016280           78 MLDELQEHVESIDMANDL   95 (392)
Q Consensus        78 aL~~L~~lve~iDnA~d~   95 (392)
                      ||+.|++|||+|||||++
T Consensus        75 Ald~le~LVE~IDNANnl   92 (92)
T PF08609_consen   75 ALDNLEELVENIDNANNL   92 (92)
T ss_pred             HHHHHHHHHHcccccccC
Confidence            999999999999999985

Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.53  E-value=2.7e-13  Score=112.49  Aligned_cols=118  Identities=26%  Similarity=0.303  Sum_probs=110.8

Q ss_pred             HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280           94 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus        94 d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      .|++.|+++.++.+|.+++..+|..|+++|++++.++|.....+++.|+++.|+.++.+ .++.++..|+|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence            47889999999999999999999999999999999999899999999999999999886 58899999999999999998


Q ss_pred             cccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          174 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       174 ~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      +.....+...|+++.|.+++.+.+.+++..++++|.+|+
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            877888888999999999999999999999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.7e-12  Score=125.99  Aligned_cols=205  Identities=16%  Similarity=0.198  Sum_probs=172.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++..+-.|--.|..+..+-.+...++..|++|.++++|+++.-.+-.....||.+++-. |-.-..|.+.|.+.||+++|
T Consensus       264 s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL  342 (550)
T KOG4224|consen  264 SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLL  342 (550)
T ss_pred             ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHH
Confidence            33455567778888889999999999999999999999998877777788888887743 43445578999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      ....+++++..|...|-++.-.+..+...|...|+++.|..++......+|.....+++.|+- +..++..+.+.|+++.
T Consensus       343 ~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld~gi~~i  421 (550)
T KOG4224|consen  343 RAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLDSGIIPI  421 (550)
T ss_pred             hcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcce
Confidence            987778899999999999998888899999999999999999999888888888888887775 4677899999999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhhhhhhhhHHHHHHHHH
Q 016280          231 MLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEKLKQLLG  277 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~~~~~~~~~~L~~~L~  277 (392)
                      |+.++.+.+.+++..++.+|.|++.+-.  ..++++..+|...+...|.
T Consensus       422 LIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~  470 (550)
T KOG4224|consen  422 LIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLA  470 (550)
T ss_pred             eecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHH
Confidence            9999999999999999999999998765  3455555666655554443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.44  E-value=2.1e-12  Score=107.16  Aligned_cols=119  Identities=29%  Similarity=0.313  Sum_probs=110.0

Q ss_pred             HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280          136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN  215 (392)
Q Consensus       136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~  215 (392)
                      .+++.|+++.|+.++.+ .+..++..++++|++++.+.+.....|+..|+++.|..+|.+++.+++..|+++|++|+...
T Consensus         2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            36788999999999886 46899999999999999998888899999999999999999999999999999999999887


Q ss_pred             CcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          216 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       216 ~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      +.....+.+.|+++.+++++...+..+++.++.+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            7777888999999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=6e-10  Score=109.79  Aligned_cols=180  Identities=19%  Similarity=0.226  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP  154 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~  154 (392)
                      +....+...+.++..+...++.++  ++....-..+.+.+=|..|..-|-..+.+-... ..++..||+.+|+..+.+ +
T Consensus        61 ~~~~~e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~~l~~-~  136 (342)
T KOG2160|consen   61 MQAHTEDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLGYLEN-S  136 (342)
T ss_pred             HHHhhhhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHHHhcC-C
Confidence            334455566788888888888887  222222224567888999999999999875544 558999999999997665 6


Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH  233 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~  233 (392)
                      +.++|..|+|.|+.+++|+|..+..+.+.||++.|..++.++ +..++.||++++++|+++++.....|...+....|..
T Consensus       137 ~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~  216 (342)
T KOG2160|consen  137 DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRD  216 (342)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHH
Confidence            889999999999999999999999999999999999999875 5789999999999999999999999999988999999


Q ss_pred             hhcC--CChHHHHHHHHHHHHHHcCCC
Q 016280          234 LASS--EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       234 LL~~--~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+.+  .+..++.+++..+..+.....
T Consensus       217 vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  217 VLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             HHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            9998  667788999999999887665

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.16  E-value=2.6e-09  Score=112.24  Aligned_cols=183  Identities=20%  Similarity=0.223  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +.|+.+.+.+.|..+++..+...-  .-+..+.|...|.|+++.||..+++.|+.+++++....+.+.+.+.++.++.++
T Consensus        51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L  128 (503)
T PF10508_consen   51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL  128 (503)
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence            557777888888888887755444  345567788999999999999999999999999988778788889999999998


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      .. ++..|...|+-+|+.++++ +.....++..+++..|..++...+..+|.++..++..++..+++..+.+.+.|+++.
T Consensus       129 ~~-~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~  206 (503)
T PF10508_consen  129 RD-PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL  206 (503)
T ss_pred             cC-CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence            65 6889999999999999976 456666778889999999999888889999999999999988888899999999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          231 MLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ++..|.++|.-+|..|+.+|..|+...
T Consensus       207 ll~eL~~dDiLvqlnalell~~La~~~  233 (503)
T PF10508_consen  207 LLKELDSDDILVQLNALELLSELAETP  233 (503)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence            999999999999999999999999933

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=1.7e-08  Score=98.72  Aligned_cols=221  Identities=14%  Similarity=0.184  Sum_probs=167.2

Q ss_pred             HHHHHHHHhhCCccHHHHHHH-HHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCC----------CChHHHHHcCCh
Q 016280           33 RRWFMEAMQSQTVDVIKRMKE-ITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESI----------DMANDLHSIGGL  101 (392)
Q Consensus        33 ~~~L~~Al~~~~~D~~~~mk~-~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~i----------DnA~d~~~lGgl  101 (392)
                      .+|++.|--...+.--..|+- ++.+|..+   +...+.+ +-.-++.+.|.-++-+-          ..|+.|.+.||+
T Consensus       168 ~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~---l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l  243 (461)
T KOG4199|consen  168 LQWLQKACIMHEVNRQLFMELKILELILQV---LNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGIL  243 (461)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhhHHHHHHHH---HcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhH
Confidence            688887743321111112332 33444322   2223333 33334555666555433          479999999999


Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHH---HHHHHHHHHhhcCCcccH
Q 016280          102 APLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR---TKALGAISSLIRHNKPGI  177 (392)
Q Consensus       102 ~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr---~kAl~ALS~lvR~~~~~~  177 (392)
                      ..|+..|.. -++++-..++-.|+++|-+++.||. |.+.||+..|++++....+..+|   +.++..|+.+. ++....
T Consensus       244 ~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvK  321 (461)
T KOG4199|consen  244 TALTEALQAGIDPDSLVSLSTTLKALAVRDEICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVK  321 (461)
T ss_pred             HHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchH
Confidence            999999975 5789999999999999999999987 89999999999998864444555   55666677776 566788


Q ss_pred             HHHHHcChHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CC-ChHHHHHHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SE-DPDVREAALRGLLEL  253 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~--s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~-d~~v~E~aL~aL~~L  253 (392)
                      ..+++.||.+.|+.++.  ++++.+-..++..++.|+-..|++...+++.|+-...++-++ ++ ...+|..+..++.||
T Consensus       322 s~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNi  401 (461)
T KOG4199|consen  322 STIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNI  401 (461)
T ss_pred             HHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            89999999999998874  578999999999999999999999999999999999998887 33 467999999999999


Q ss_pred             HcCCCh
Q 016280          254 AREKAD  259 (392)
Q Consensus       254 ~~~~~~  259 (392)
                      +.++..
T Consensus       402 v~rs~~  407 (461)
T KOG4199|consen  402 VVRSAE  407 (461)
T ss_pred             HHhhhh
Confidence            988754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=1.2e-08  Score=99.85  Aligned_cols=186  Identities=16%  Similarity=0.236  Sum_probs=144.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-CCHHHH---HHHHHHHHHHhhCCHHHHHHHHHcCCHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-SHANIR---AKAGEVVTTIVQNNPRSQQLVMEANGLEP  145 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR---~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~  145 (392)
                      .+++.+..+.-.|..+--.-+....+.+.||+..|++++.+ .+.+.|   ..++..|..+|.+. .++..|++.||++.
T Consensus       254 ~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~  332 (461)
T KOG4199|consen  254 IDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDK  332 (461)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHH
Confidence            34454544444444444444556677889999999999976 445555   56777778888764 48889999999999


Q ss_pred             HHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          146 LLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       146 Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      ++.++. ...++.|-..++-+||-++--.|.....|++.||-...++.|+..  ...+|+.|||+|++++....+++..+
T Consensus       333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~  412 (461)
T KOG4199|consen  333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL  412 (461)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH
Confidence            998854 445788989999999998877888888999999999999999864  37899999999999998888888888


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ...| ++.|+..-+..+.++...+-.+|..|--+.
T Consensus       413 l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v  446 (461)
T KOG4199|consen  413 LANG-IEKLIRTAKANHETCEAAAKAALRDLGCDV  446 (461)
T ss_pred             Hhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence            8887 667777777778888777777776554333

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.98  E-value=1.2e-08  Score=98.09  Aligned_cols=156  Identities=21%  Similarity=0.237  Sum_probs=123.7

Q ss_pred             HHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280           96 HSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus        96 ~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      ...+.++.|+.+|++ .++.+++.|..++|+++. .|..|+.+.+.|+++.+..++.+ +++.+|.+|++||.++..+. 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~-   85 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVND-   85 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCCh-
Confidence            345668899999985 689999999999999875 68999999999999999999877 68999999999999998654 


Q ss_pred             ccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          175 PGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       175 ~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      ..+..+- .-.-.++...... -+..+|..++.+|.+|+..+ .....+  .+.++.++.||.+++..++.+++++|.+|
T Consensus        86 en~~~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   86 ENQEQIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hhHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3454442 2233333333443 37899999999999997543 223333  24788999999999999999999999999


Q ss_pred             HcCCC
Q 016280          254 AREKA  258 (392)
Q Consensus       254 ~~~~~  258 (392)
                      +.+..
T Consensus       162 S~np~  166 (254)
T PF04826_consen  162 SENPD  166 (254)
T ss_pred             ccCHH
Confidence            98775

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.92  E-value=1.5e-07  Score=90.62  Aligned_cols=181  Identities=17%  Similarity=0.129  Sum_probs=142.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++.-.+.++-.+......--+-.-+.+.||++.+..+|.++++.+|..|.+++.+++.+ .+.|..+-.  .++.+++..
T Consensus        26 dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~--~i~~Vc~~~  102 (254)
T PF04826_consen   26 DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKM--YIPQVCEET  102 (254)
T ss_pred             ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHH--HHHHHHHHH
Confidence            34455666666666555444556667899999999999999999999999999999876 446665533  477777754


Q ss_pred             CCC-CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          151 ASD-PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       151 ~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      .+. .+..++..++.+|.++...+. ....+  .+.++.+.++|.+.+.++|..++.+|.+|+. ++.....++..+++.
T Consensus       103 ~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~  178 (254)
T PF04826_consen  103 VSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLS  178 (254)
T ss_pred             hcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchh
Confidence            443 467899999999999976543 23333  5689999999999999999999999999985 577777888889999


Q ss_pred             HHHHhhcCC-ChHHHHHHHHHHHHHHcCCC
Q 016280          230 LMLHLASSE-DPDVREAALRGLLELAREKA  258 (392)
Q Consensus       230 ~Lv~LL~~~-d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .++.|+... +.++...++..+.+|..+-.
T Consensus       179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  179 SFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             HHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            999999865 67889999999999966554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.89  E-value=6.5e-08  Score=104.58  Aligned_cols=177  Identities=15%  Similarity=0.108  Sum_probs=150.9

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC
Q 016280           76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD  155 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~  155 (392)
                      -.++..|.++.++..+-..+++.|++++|+++|.+.+.++...+..+|..++-.. .++..+.+.|++++|++++.++ +
T Consensus       267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~-~  344 (708)
T PF05804_consen  267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSE-N  344 (708)
T ss_pred             HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCC-C
Confidence            3567789999999999999999999999999999999999999999999999764 4788899999999999999884 6


Q ss_pred             HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 016280          156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA  235 (392)
Q Consensus       156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL  235 (392)
                      ..++..++.+|-|+.-+ +.....++..|.+|.|+.+|.+++  .+.-++.+|++|+.. ...+..|...+.++.++.++
T Consensus       345 ~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~L  420 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQML  420 (708)
T ss_pred             HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHH
Confidence            78999999999999854 567889999999999999998654  456688889998864 56778888889999999975


Q ss_pred             c-CCChHHHHHHHHHHHHHHcCCC
Q 016280          236 S-SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       236 ~-~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      - .++..+...++.++.|++.+..
T Consensus       421 l~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  421 LENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HhCCCccccHHHHHHHHHHhcCHH
Confidence            5 5566676667788888888765

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.85  E-value=4.9e-07  Score=95.10  Aligned_cols=188  Identities=17%  Similarity=0.184  Sum_probs=155.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      ++.-+.-++..|..+++..+.+ .-+.+.+.++.++.+|.+++.+|...|+.+|..++.+.+..+ .++..+.+..|..+
T Consensus        90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~-~l~~~~~~~~L~~l  168 (503)
T PF10508_consen   90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE-QLFDSNLLSKLKSL  168 (503)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH-HHhCcchHHHHHHH
Confidence            4456677788888888877664 445567888888999999999999999999999999877664 47788889999998


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.+ .+..+|.++...+..++++++.........|-++.++..|.++|.-+|..|+-+|..|+. .+...+.+.+.|+++
T Consensus       169 ~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~  246 (503)
T PF10508_consen  169 MSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFD  246 (503)
T ss_pred             Hhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHH
Confidence            776 467899999999999999999888888899999999999999999999999999999998 678889999999999


Q ss_pred             HHHHhhcCC--Ch---HHH-HHHHHHHHHHHcCCChhh
Q 016280          230 LMLHLASSE--DP---DVR-EAALRGLLELAREKADGS  261 (392)
Q Consensus       230 ~Lv~LL~~~--d~---~v~-E~aL~aL~~L~~~~~~~~  261 (392)
                      .|+.++...  |+   .+. -..+...++++...+..+
T Consensus       247 ~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v  284 (503)
T PF10508_consen  247 KLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV  284 (503)
T ss_pred             HHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence            999999743  22   122 233367777877655433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.84  E-value=2.2e-07  Score=100.49  Aligned_cols=179  Identities=11%  Similarity=0.095  Sum_probs=143.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +.+-...++..|..|.-.-+|...+.+.|.++.|++++.+++..++..|.++|.|++.+ +..+..+++.|.+|+|+.+|
T Consensus       303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL  381 (708)
T PF05804_consen  303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL  381 (708)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh
Confidence            44556667788888888889999999999999999999999999999999999999976 66788999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      .++.   .+.-++..|.+++.. ..+...|...+.++.|++++-+ ++.++...++.++.+|+.+ +.+.+.+++.|.++
T Consensus       382 ~d~~---~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~  456 (708)
T PF05804_consen  382 KDPN---FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQ  456 (708)
T ss_pred             CCCc---hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHH
Confidence            7643   445566666666654 4577889888999999987654 6778888889999999864 66778888888899


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .|+...-.....+   .+..|.|++.|.+
T Consensus       457 ~L~~ra~~~~D~l---LlKlIRNiS~h~~  482 (708)
T PF05804_consen  457 SLMKRALKTRDPL---LLKLIRNISQHDG  482 (708)
T ss_pred             HHHHHHHhcccHH---HHHHHHHHHhcCc
Confidence            9988654322222   2367788888874

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.73  E-value=3.3e-07  Score=96.08  Aligned_cols=170  Identities=16%  Similarity=0.175  Sum_probs=132.0

Q ss_pred             CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 016280           89 IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS  168 (392)
Q Consensus        89 iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~  168 (392)
                      |+++..|...--...+.......+...++.||.++-+++..-.-.+.-+-..++..+||+++ .+++..+...+++||.|
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICN  445 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHH
Confidence            67777776554444444444567888898899888877754333333322336788999997 45788999999999999


Q ss_pred             hhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc-hHHHHHhhcCCChHHHHHHH
Q 016280          169 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF-PRLMLHLASSEDPDVREAAL  247 (392)
Q Consensus       169 lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~-v~~Lv~LL~~~d~~v~E~aL  247 (392)
                      +|-.+.+-+..|+..||+..|...+.+++..+|.++.|+|+++.-...+......-..+ -..++.+..+++..|||.++
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f  525 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF  525 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765544333322333 34567788899999999999


Q ss_pred             HHHHHHHcCCCh
Q 016280          248 RGLLELAREKAD  259 (392)
Q Consensus       248 ~aL~~L~~~~~~  259 (392)
                      ..|.|++-++..
T Consensus       526 qllRNl~c~~~~  537 (678)
T KOG1293|consen  526 QLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHhhcCcHH
Confidence            999999988653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.71  E-value=9.9e-07  Score=87.16  Aligned_cols=186  Identities=19%  Similarity=0.258  Sum_probs=134.2

Q ss_pred             CHHHHHHHHHHHHHhhcCC-CChHHHHHcC------ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCH
Q 016280           71 TPQDIEDMLDELQEHVESI-DMANDLHSIG------GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGL  143 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lG------gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l  143 (392)
                      ..+-+.-.|-.+.+++.+. ....-|+...      -+.++++++.+++.-++..|+.+++.++...+....... .+.+
T Consensus        70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l  148 (312)
T PF03224_consen   70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEAL  148 (312)
T ss_dssp             -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHH
Confidence            3455566777777777766 4566666632      589999999999999999999999999876664444322 4567


Q ss_pred             HHHHHhhCCC---CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-----cC--CCHHHHHHHHHHHHHHhh
Q 016280          144 EPLLSNFASD---PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-----GS--ESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       144 ~~Ll~LL~s~---~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-----~s--~d~kl~~kA~~lLs~L~~  213 (392)
                      +.+++.+.+.   .+..++.-|+.+++.++|. +.....|...+|++.|..++     .+  .+..++=.+++++--|+-
T Consensus       149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  227 (312)
T PF03224_consen  149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF  227 (312)
T ss_dssp             HHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence            7888777653   2345778999999999976 56788899999999999999     22  347788888888877764


Q ss_pred             cCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCCh
Q 016280          214 ENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       214 ~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                       ++...+.+.+.++++.|+.+++ +....+..-++.+|.|++.....
T Consensus       228 -~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~  273 (312)
T PF03224_consen  228 -EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK  273 (312)
T ss_dssp             -SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred             -CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence             4566777888889999999998 45677888899999999988874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=3.3e-07  Score=99.94  Aligned_cols=184  Identities=19%  Similarity=0.134  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280           74 DIEDMLDELQEHVESIDMANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~-~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      -+.+||.-|..+++---.|.++. ..|.+|.+++||+++-.++|---+.+-+.|..-.|.||..+++.+|-...++.|..
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            36789999999999889998887 67999999999999999999999999999988889999999999998888888775


Q ss_pred             C--CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          153 D--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       153 ~--~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      .  -+++-|.-|+|-|+.++++++.+++.....+-+.+....|.++ .+-+|...|-.|..|-.+..+.+-.=.+.+..+
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence            2  2468999999999999999999999999999999999999885 688999999999999988777666666778999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .|+.+|.++-++||..|+.||+.+....
T Consensus       646 kL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  646 KLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999998864

>PRK09687 putative lyase; Provisional

Probab=98.62  E-value=1e-06  Score=86.01  Aligned_cols=132  Identities=14%  Similarity=0.061  Sum_probs=84.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      .++.+..+++++++.+|+.|+|+||.+-... ..+.     -.++.|..++.++++..||..|+.+|+.++......   
T Consensus        55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---  125 (280)
T PRK09687         55 VFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---  125 (280)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence            3566778889999999999999999874321 1112     246667777677788899999999999886443211   


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                        ....+..+..++.+++..||..|+++|..+-.           ...++.|+.+|.+++.+||..|+.+|+.+
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence              11133445556666666777777766654421           12355566666666666666666666655

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.45  E-value=2.8e-06  Score=79.51  Aligned_cols=187  Identities=19%  Similarity=0.247  Sum_probs=121.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCC---CChHHHHHc--CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 016280           68 QGVTPQDIEDMLDELQEHVESI---DMANDLHSI--GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANG  142 (392)
Q Consensus        68 ~~~~~e~~~~aL~~L~~lve~i---DnA~d~~~l--Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~  142 (392)
                      .+.+=+.+.++|..|..++...   +....|...  ..+..++..+.+....|-..|+.+|+.++..-...-+.+++ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence            3456788899999999998866   555555432  34556777888888889999999999999753322222222 46


Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      +|.|+..+.+ +...++..|..+|-.++.+.+.....     -+..+...+.++++.+|..++..+..++...+.....+
T Consensus        96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            8899998776 46789999999999999876611211     15667788899999999999999999987766222223


Q ss_pred             Hh----cCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280          223 DK----LGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  261 (392)
Q Consensus       223 ~~----~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~  261 (392)
                      ..    ..+++.+..++.+.++++|+.|-.++..+.++.+...
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            22    2467788889999999999999999999988776543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.41  E-value=2.3e-06  Score=91.61  Aligned_cols=165  Identities=19%  Similarity=0.169  Sum_probs=128.9

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--chH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS--DCS  220 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~--~~~  220 (392)
                      ++..+.+|++ .++.++..|.+-|-.+|+++......+...|||+.|+.+|.+....|++.||++|.+|+-+...  ++-
T Consensus       235 lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            5677888876 5789999999999999999999999999999999999999999999999999999999976555  677


Q ss_pred             HHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHh------------------
Q 016280          221 VVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIK------------------  281 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~------------------  281 (392)
                      .+.+.+.|+.++.+|+. .|.++++.+..+|+||.+...-.. ...++.+..|...+---..                  
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~-~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM-LIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence            88899999999999995 799999999999999998843111 1114444444444332111                  


Q ss_pred             -------hhcCCChhhHHHHHHHHHHHHHHHHHHh
Q 016280          282 -------GISLMSPEDLGAAREERHLVDSLWNACY  309 (392)
Q Consensus       282 -------~i~~~~~ed~~~~~ee~~~~~~L~~~~f  309 (392)
                             .+..-+.|..+..++.-.+++.|+..|-
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq  427 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ  427 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence                   1111245666677777777888888665

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.34  E-value=0.00017  Score=74.15  Aligned_cols=183  Identities=14%  Similarity=0.117  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHhhcCCC-ChHHHHHc-----CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280           73 QDIEDMLDELQEHVESID-MANDLHSI-----GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL  146 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iD-nA~d~~~l-----Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L  146 (392)
                      +-+.-.|--+.+++..-+ .+.-|++.     .-+.+++.+|++++.-|...|+.+++.++...+.........-.+..|
T Consensus        69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l  148 (429)
T cd00256          69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWL  148 (429)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence            444555666666666532 35677765     468889999999999999999999999987544221211111123345


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHh
Q 016280          147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDK  224 (392)
Q Consensus       147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l~~  224 (392)
                      ...+.+..+...+.-++.+++.++|.. .....|...+|++.|..+|+..  +..++=.+++.+--|.-+ +...+.+.+
T Consensus       149 ~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~  226 (429)
T cd00256         149 KEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKR  226 (429)
T ss_pred             HHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhcc
Confidence            555555334567778889999999874 4677888999999999999863  457777777777666543 335556677


Q ss_pred             cCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCC
Q 016280          225 LGFPRLMLHLASS-EDPDVREAALRGLLELAREK  257 (392)
Q Consensus       225 ~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .++|+.++.+++. .-..+..-++.+|.|+....
T Consensus       227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~  260 (429)
T cd00256         227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR  260 (429)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence            8999999999984 45667778888899988754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=98.33  E-value=1.1e-05  Score=78.79  Aligned_cols=192  Identities=14%  Similarity=0.059  Sum_probs=129.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ++.|+.+|.+++..+|+.|++.|+.+-.           ..+++.+..++.+ .++.+|..|+++|+.+-.....     
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc-----
Confidence            7889999999999999999999987642           2245566776554 5889999999999998543211     


Q ss_pred             HHcChHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC-
Q 016280          181 RLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA-  258 (392)
Q Consensus       181 ~~~gGl~~L~~l-L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~-  258 (392)
                       ....++.|..+ +++++..||..|+.+|.++.......     ...++..+..++.+++..||..++.+|+.+-...- 
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai  161 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAI  161 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHH
Confidence             22356777766 67788999999999999997543221     11245567777888999999999999976642111 


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          259 DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       259 ~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      +....++.++...++..-...+..+..   .+       -+..+.|+.........+|.++++.|-.
T Consensus       162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~---~~-------~~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        162 PLLINLLKDPNGDVRNWAAFALNSNKY---DN-------PDIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcCCC---CC-------HHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence            112222233333333333333333311   01       1455667888888888999998888853

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1e-05  Score=87.03  Aligned_cols=177  Identities=23%  Similarity=0.226  Sum_probs=143.3

Q ss_pred             HHHHHHHHhhcCCCChHHHHHc-----CChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           77 DMLDELQEHVESIDMANDLHSI-----GGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        77 ~aL~~L~~lve~iDnA~d~~~l-----Ggl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ..++.|.++||.+-..+.-.--     -.+|.|+.+|++ .+.+|.-.||.+|.+++.--|..-..++++++||.|+.-|
T Consensus       184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL  263 (1051)
T KOG0168|consen  184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKL  263 (1051)
T ss_pred             HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhh
Confidence            3566677777766554433211     234778899988 5799999999999999999999999999999999999877


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPR  229 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~  229 (392)
                      ..=.-..|...++.||--|.|.++   .+++.+||+...+..|.=....+|++|....++.|..=+.+ ...+  +..+|
T Consensus       264 ~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealP  338 (1051)
T KOG0168|consen  264 LTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALP  338 (1051)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHH
Confidence            654567899999999999999887   47789999999999988778999999999999999753333 2233  34689


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .|..+|...|.+..|.++-++..++...-
T Consensus       339 lL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  339 LLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999877554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=4.5e-05  Score=81.75  Aligned_cols=196  Identities=20%  Similarity=0.220  Sum_probs=154.8

Q ss_pred             HHhhhhCCCCHHHHHHHHHHHHHhhcCCC------C-----------hHHHHHc-CChHHHHHhhcCCCHHHHHHHHHHH
Q 016280           62 EQVLESQGVTPQDIEDMLDELQEHVESID------M-----------ANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVV  123 (392)
Q Consensus        62 ~~~l~~~~~~~e~~~~aL~~L~~lve~iD------n-----------A~d~~~l-Ggl~~Ll~lL~s~~~~IR~~Aa~vL  123 (392)
                      ..++.....++|-+.-+||.+..++..-|      +           |..|++. +-+..|+.++..-+-.||+.|..+|
T Consensus        67 i~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLl  146 (970)
T KOG0946|consen   67 IQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLL  146 (970)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHH
Confidence            34455555678888889999988887653      3           3455544 4556677888999999999999999


Q ss_pred             HHHhhCCH-HHHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC----C
Q 016280          124 TTIVQNNP-RSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE----S  197 (392)
Q Consensus       124 g~iaqNNp-~~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~----d  197 (392)
                      ..+..+-| ++|.+++.. -||..|+.+|.. ..+-+|-.|++-|+.++|+++..++.+.-.+++.-|..++...    .
T Consensus       147 salls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG  225 (970)
T KOG0946|consen  147 SALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG  225 (970)
T ss_pred             HHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            99888755 899999877 689999999875 4668999999999999999998888887889999999998753    2


Q ss_pred             HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC---Ch------H----HHHHHHHHHHHHHcCCC
Q 016280          198 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE---DP------D----VREAALRGLLELAREKA  258 (392)
Q Consensus       198 ~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~---d~------~----v~E~aL~aL~~L~~~~~  258 (392)
                      --|-..++.+|.+|+..+.++...|.+.+.|+.|.++|..+   |.      +    -...+|.++..++.-+.
T Consensus       226 gIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N  299 (970)
T KOG0946|consen  226 GIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN  299 (970)
T ss_pred             cchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence            46788999999999999999999999999999999998732   21      1    12445666666666443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.21  E-value=1.4e-05  Score=85.70  Aligned_cols=173  Identities=14%  Similarity=0.141  Sum_probs=133.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc--cHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GIE  178 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~--~~~  178 (392)
                      ++-.+.+|.+.++.++..|+.-|-.++--+.+++..+-+.|+|++||.+|.+ ...+|++.|.+|+-|++-+...  +.-
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence            5677899999999999999999999999888899999999999999999998 4779999999999999988766  777


Q ss_pred             HHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--------------CCChHHH
Q 016280          179 AFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--------------SEDPDVR  243 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--------------~~d~~v~  243 (392)
                      ++...+|++.++++|.. .|..+++.+...|-+|.+. ...+..++.. .+..|...+-              ..+.++-
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence            88899999999999986 7899999999999999865 2333333322 2333322211              1134566


Q ss_pred             HHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHh
Q 016280          244 EAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIK  281 (392)
Q Consensus       244 E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~  281 (392)
                      -.+..+|.|++....+   ..++|     ..|...|-+.++
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c-----~GLIdaL~~~iq  427 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMREC-----DGLIDALLFSIQ  427 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhc-----cchHHHHHHHHH
Confidence            7788888888886653   35555     445555555555

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.20  E-value=0.00017  Score=81.16  Aligned_cols=175  Identities=21%  Similarity=0.206  Sum_probs=95.8

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280          103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL  182 (392)
Q Consensus       103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~  182 (392)
                      .|+..|.++++.||..|+.+|+.+..            +-...|+..|. +++..||..|+.+|+.+-            
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~-D~d~~VR~~Av~aL~~~~------------  742 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALG-DPDHRVRIEAVRALVSVD------------  742 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhc-CCCHHHHHHHHHHHhccc------------
Confidence            34444455555555555555544321            11223444433 356666666666666531            


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hh
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DG  260 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~  260 (392)
                        ..+.|..++.+++..||..++..|..+....         ...++.|..+++++++.+|..|+.+|..+.....  ..
T Consensus       743 --~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~  811 (897)
T PRK13800        743 --DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAA  811 (897)
T ss_pred             --CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHH
Confidence              1233455666666777777766666664321         1225677888888888888888888887754321  11


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          261 SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       261 ~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      ....+.++...+|..--..+..+..            .+.+..|...+-.+...+|++++++|-.
T Consensus       812 l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~  864 (897)
T PRK13800        812 ATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTR  864 (897)
T ss_pred             HHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence            2233344444444444444433331            1233555555566677788888887765

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.00019  Score=77.67  Aligned_cols=187  Identities=11%  Similarity=0.060  Sum_probs=152.2

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280           69 GVTPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL  146 (392)
Q Consensus        69 ~~~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L  146 (392)
                      +..+|-+..|...|.++||-..-. .-++..+.+|.|+ +|+.-..-+|-+++..+|-.+.+.+|+   ++++.|+|...
T Consensus       223 E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~  299 (1051)
T KOG0168|consen  223 EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAV  299 (1051)
T ss_pred             cccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHH
Confidence            345677778899999999987654 4455789999999 477889999999999999999998884   59999999998


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CCcchHHHH
Q 016280          147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE---NASDCSVVD  223 (392)
Q Consensus       147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~---~~~~~~~l~  223 (392)
                      |..|+- -+..++++|+...+|+|..-++-.-.| ....+|.|..+|+..|.+.-+.+|-.+.+++..   .+...+.++
T Consensus       300 LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f~~-v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~  377 (1051)
T KOG0168|consen  300 LSYLDF-FSIHAQRVALAIAANCCKSIRSDEFHF-VMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLC  377 (1051)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHh
Confidence            887763 246799999999999998765443333 467899999999999999999999999999854   444567888


Q ss_pred             hcCchHHHHHhhcCCC----hHHHHHHHHHHHHHHcCCChh
Q 016280          224 KLGFPRLMLHLASSED----PDVREAALRGLLELAREKADG  260 (392)
Q Consensus       224 ~~G~v~~Lv~LL~~~d----~~v~E~aL~aL~~L~~~~~~~  260 (392)
                      ..|+|....+||....    ..+..-..++|..++.+++..
T Consensus       378 s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~  418 (1051)
T KOG0168|consen  378 SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL  418 (1051)
T ss_pred             chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence            8999999999998654    346677789999999998854

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.06  E-value=9.7e-05  Score=83.04  Aligned_cols=194  Identities=21%  Similarity=0.231  Sum_probs=120.4

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      +.++.|+.+|.++++.||..|+..|+.+.           ....++.|+.+| +|++..||..|+.+|..+....+.   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~---  685 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP---  685 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc---
Confidence            35678889999999999999999999764           123567788777 456888999998888777432211   


Q ss_pred             HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----------Ccc--h----HHHHhcCchHHHHHhhcCCChHH
Q 016280          179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----------ASD--C----SVVDKLGFPRLMLHLASSEDPDV  242 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~----------~~~--~----~~l~~~G~v~~Lv~LL~~~d~~v  242 (392)
                             .+.|..+|.++++.+|..|+.+|..+-...          ++.  +    ..+.+.+-.+.|..++.+++..|
T Consensus       686 -------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        686 -------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV  758 (897)
T ss_pred             -------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence                   134455555566666666655554331110          000  0    11122233456777888889999


Q ss_pred             HHHHHHHHHHHHcCCC---hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccc
Q 016280          243 REAALRGLLELAREKA---DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKG  319 (392)
Q Consensus       243 ~E~aL~aL~~L~~~~~---~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~  319 (392)
                      |..++.+|..+.....   ......+.++....+...-..+..+..  .         -.....|......+.-.+|.++
T Consensus       759 R~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~---------~~~~~~l~~aL~d~d~~VR~~A  827 (897)
T PRK13800        759 RIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC--P---------PDDVAAATAALRASAWQVRQGA  827 (897)
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c---------chhHHHHHHHhcCCChHHHHHH
Confidence            9999999988876553   223333345555555555555555432  1         0122345666666677799998


Q ss_pred             eeeccC
Q 016280          320 LLVLPG  325 (392)
Q Consensus       320 ~~~~~~  325 (392)
                      +.+|..
T Consensus       828 a~aL~~  833 (897)
T PRK13800        828 ARALAG  833 (897)
T ss_pred             HHHHHh
Confidence            888854

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=98.04  E-value=7.5e-05  Score=71.78  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH
Q 016280          112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD  191 (392)
Q Consensus       112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~  191 (392)
                      ...+...|..+|--++..+|.+|..+....++..|+.+|....++.++..++.+|.+++..++.++..|-..+|+..++.
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            34467778999999999999999999999999999999966567899999999999999999999999999999999999


Q ss_pred             hhcCC--CHHHHHHHHHHHHHHhhc
Q 016280          192 ALGSE--SVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       192 lL~s~--d~kl~~kA~~lLs~L~~~  214 (392)
                      ++++.  +..+|.|..-+|...+..
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHcc
Confidence            99874  588988888776655544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=1.3e-05  Score=55.15  Aligned_cols=41  Identities=34%  Similarity=0.569  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280          130 NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR  171 (392)
Q Consensus       130 Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR  171 (392)
                      ||..++.+++.|++++|+++|.+ .+..++..|+|||++|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence            46778889999999999999885 689999999999999975

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00048  Score=76.77  Aligned_cols=150  Identities=22%  Similarity=0.230  Sum_probs=114.1

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280          105 LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN  184 (392)
Q Consensus       105 l~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g  184 (392)
                      -.+|.|++..-|..|..+|+.++...++.-...+. ..++..+..| +|+++.||..|+.||+-+..+..+..+.....-
T Consensus       354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~iqk~~~e~  431 (1075)
T KOG2171|consen  354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER  431 (1075)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence            35778999999999999999999886644332221 2344444443 568999999999999999999999888887777


Q ss_pred             hHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchH-HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          185 GYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKL--GFPR-LMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       185 Gl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~-~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      -++.|+..+.+. +++++..|+.++-++....+..  .+.-.  +++. .+..|+.++...++|.++.+|...+....
T Consensus       432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            888899999875 5899999999999998654433  22222  4444 34446678889999999999999987554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.91  E-value=3e-05  Score=61.21  Aligned_cols=86  Identities=21%  Similarity=0.309  Sum_probs=67.6

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          101 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       101 l~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      ++.|++.| +++++.+|..|+++||.+-  .+         .+++.|+.++. ++++.||..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLK-DEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhC---------
Confidence            57899988 8899999999999999542  12         24888999884 579999999999999871         


Q ss_pred             HHHcChHHHHHHhhcCCC-HHHHHHHHHHHH
Q 016280          180 FRLANGYAALRDALGSES-VKFQRKALNLIQ  209 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs  209 (392)
                        ....++.|.+++.+++ ..+|..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              3448889999998754 566888887764

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=97.86  E-value=6.7e-05  Score=84.63  Aligned_cols=196  Identities=12%  Similarity=0.093  Sum_probs=147.6

Q ss_pred             cCCCChHHHHHcC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHH
Q 016280           87 ESIDMANDLHSIG-GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALG  164 (392)
Q Consensus        87 e~iDnA~d~~~lG-gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~  164 (392)
                      -++.|...+|... -+..||..|.+...+|..-.+.+|.|+.=+-. .....+-+.|-+..|.........+...+..|.
T Consensus       381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS  460 (2195)
T KOG2122|consen  381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS  460 (2195)
T ss_pred             ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence            4666878888764 45778899999888999999999999986544 344445577889889887655445566677889


Q ss_pred             HHHHhhcCCcccHHHHHH-cChHHHHHHhhcCC----CHHHHHHHHHHHHHHh---hcCCcchHHHHhcCchHHHHHhhc
Q 016280          165 AISSLIRHNKPGIEAFRL-ANGYAALRDALGSE----SVKFQRKALNLIQYLL---NENASDCSVVDKLGFPRLMLHLAS  236 (392)
Q Consensus       165 ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~----d~kl~~kA~~lLs~L~---~~~~~~~~~l~~~G~v~~Lv~LL~  236 (392)
                      ||.||.-|+..+...|+. -|++.+|+..|.-+    ..++-..|-..|.|..   ......++++.+.+.+..|+..|+
T Consensus       461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK  540 (2195)
T KOG2122|consen  461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK  540 (2195)
T ss_pred             HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence            999999999889888886 58899999999743    4666667766666654   334566788999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHhhhc
Q 016280          237 SEDPDVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGIS  284 (392)
Q Consensus       237 ~~d~~v~E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~~i~  284 (392)
                      +....+.-.++.+|+||...++.   ...+  -++..-|+.+|....+-|.
T Consensus       541 S~SLTiVSNaCGTLWNLSAR~p~DQq~LwD--~gAv~mLrnLIhSKhkMIa  589 (2195)
T KOG2122|consen  541 SHSLTIVSNACGTLWNLSARSPEDQQMLWD--DGAVPMLRNLIHSKHKMIA  589 (2195)
T ss_pred             hcceEEeecchhhhhhhhcCCHHHHHHHHh--cccHHHHHHHHhhhhhhhh
Confidence            99999999999999999888872   2222  2444555666555444433

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.00067  Score=70.86  Aligned_cols=161  Identities=16%  Similarity=0.149  Sum_probs=123.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +.+++..++..|-.+.-.-.+..     -|+..++.++.+.+..+|..+.-.+..+...++..  .++   ++..|.+=|
T Consensus        19 ~~~~~~~~l~kli~~~~~G~~~~-----~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~kdl   88 (526)
T PF01602_consen   19 DISKKKEALKKLIYLMMLGYDIS-----FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQKDL   88 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---G-----STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHHhh
Confidence            44566666666666544333222     67899999999999999999999999999999873  222   345566555


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      .+ +++.+|.-|+.+||++.  .+..     ...-++.+.+++.++++.||++|+.++..+....++.   +... +++.
T Consensus        89 ~~-~n~~~~~lAL~~l~~i~--~~~~-----~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~  156 (526)
T PF01602_consen   89 NS-PNPYIRGLALRTLSNIR--TPEM-----AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPK  156 (526)
T ss_dssp             CS-SSHHHHHHHHHHHHHH---SHHH-----HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHH
T ss_pred             cC-CCHHHHHHHHhhhhhhc--ccch-----hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHH
Confidence            65 68899999999999987  2222     2335788899999999999999999999999876553   3344 7899


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHH
Q 016280          231 MLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      +..+|.+.++.++..|+.++..+
T Consensus       157 l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  157 LKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             HhhhccCCcchhHHHHHHHHHHH
Confidence            99999999999999999999999

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.86  E-value=1.5e-05  Score=54.79  Aligned_cols=38  Identities=18%  Similarity=0.423  Sum_probs=35.6

Q ss_pred             CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280           90 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIV  127 (392)
Q Consensus        90 DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~ia  127 (392)
                      ++...+++.||+++|+.+|++++.++|..|+|+|++++
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            46778899999999999999999999999999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=97.84  E-value=0.0012  Score=70.17  Aligned_cols=193  Identities=15%  Similarity=0.108  Sum_probs=141.3

Q ss_pred             HHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChH----HHHHcCChHHHHHhhcC-------CCHHHHH
Q 016280           49 KRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMAN----DLHSIGGLAPLLGYLKN-------SHANIRA  117 (392)
Q Consensus        49 ~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~----d~~~lGgl~~Ll~lL~s-------~~~~IR~  117 (392)
                      ..+++|+.+++..         +.+++-.+|--+..++.+-|.-.    .+.+.=|+..+-+||++       +....+.
T Consensus         5 ~~l~~c~~lL~~~---------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~   75 (543)
T PF05536_consen    5 ASLEKCLSLLKSA---------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLS   75 (543)
T ss_pred             HHHHHHHHHhccC---------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHH
Confidence            4677888877653         24677788888888898776422    24555568888899987       4577899


Q ss_pred             HHHHHHHHHhhCCHHHH--HHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC
Q 016280          118 KAGEVVTTIVQNNPRSQ--QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS  195 (392)
Q Consensus       118 ~Aa~vLg~iaqNNp~~Q--~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s  195 (392)
                      .|..+|++.+. .|...  ..++  +-||.|+.++.+..+..+...++.+|.+++ .++.+.+.|+..|+++.|.+++.+
T Consensus        76 LavsvL~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~  151 (543)
T PF05536_consen   76 LAVSVLAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN  151 (543)
T ss_pred             HHHHHHHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh
Confidence            99999999998 45442  2333  349999999887656688899999999999 788999999999999999999987


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCcchHHHHhc-----CchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          196 ESVKFQRKALNLIQYLLNENASDCSVVDKL-----GFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       196 ~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-----G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                       .......|+.++.+++......  .+.+.     .++..+...+...+...+=..+..|..+-...
T Consensus       152 -~~~~~E~Al~lL~~Lls~~~~~--~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  152 -QSFQMEIALNLLLNLLSRLGQK--SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             -CcchHHHHHHHHHHHHHhcchh--hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence             6777889999999998653311  11111     34455555666555555666677777766655

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.84  E-value=2.8e-05  Score=56.70  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 016280          113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL  169 (392)
Q Consensus       113 ~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~l  169 (392)
                      +.+|..|+|+||++++..+...+.++ ..+++.|+.+|.+ ++..||.+|+|||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            46899999999999999887766544 3588999999865 4669999999999975

...

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0022  Score=71.72  Aligned_cols=172  Identities=18%  Similarity=0.137  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHc--CChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSI--GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l--Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll  147 (392)
                      +...+..+|-.|.-..|  -+...+...  ..++.++.+|+.+++.||+.||.+||.++.+ -|.+|....+ -.++.|+
T Consensus       361 ~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e-~l~~aL~  437 (1075)
T KOG2171|consen  361 EWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE-RLPPALI  437 (1075)
T ss_pred             CHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH-hccHHHH
Confidence            34555566666665555  222223221  2356667889999999999999999999998 6677776544 4666788


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH-HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL-  225 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-  225 (392)
                      ..+++..++.|+..|.-|+=+..-+++...-.=+--+-+. .+..++++....+|..++.+|...+..-.   ..|+.. 
T Consensus       438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~---~~F~pY~  514 (1075)
T KOG2171|consen  438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ---EKFIPYF  514 (1075)
T ss_pred             HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh---hhhHhHH
Confidence            8888877788999998888888777665433223334445 55566778889999999999999986422   233332 


Q ss_pred             -CchHHHHHhhcCCC-hHHHHHHHH
Q 016280          226 -GFPRLMLHLASSED-PDVREAALR  248 (392)
Q Consensus       226 -G~v~~Lv~LL~~~d-~~v~E~aL~  248 (392)
                       -+++.|.+.|...+ .+.|+....
T Consensus       515 d~~Mp~L~~~L~n~~~~d~r~Lrgk  539 (1075)
T KOG2171|consen  515 DRLMPLLKNFLQNADDKDLRELRGK  539 (1075)
T ss_pred             HHHHHHHHHHHhCCCchhhHHHHhh
Confidence             34566666666544 455444333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.80  E-value=6.1e-05  Score=59.44  Aligned_cols=87  Identities=28%  Similarity=0.280  Sum_probs=69.5

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      |+.|++.|.+++++.+|..|+++|+.+-           ....++.|..++++++..+|..|+++|..+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            5789999867789999999999999331           1245899999999999999999999999873          


Q ss_pred             HhcCchHHHHHhhcCC-ChHHHHHHHHHHH
Q 016280          223 DKLGFPRLMLHLASSE-DPDVREAALRGLL  251 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~-d~~v~E~aL~aL~  251 (392)
                       ....++.|..++.++ +..+|+.|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             234688899988875 4557899998874

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.80  E-value=9e-05  Score=61.59  Aligned_cols=67  Identities=24%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280          115 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFR  181 (392)
Q Consensus       115 IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~  181 (392)
                      +|.....+||+++-+|+.+|+.+.+.|||+.+++...- +.++.+|.-|+|||-+++.+++.+++.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            56778899999999999999999999999999988553 35789999999999999999998887764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.79  E-value=8.3e-05  Score=77.68  Aligned_cols=175  Identities=23%  Similarity=0.276  Sum_probs=121.4

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++..+-.||..|..+. ..+.+..+     ++.+..+|.++++.||..|+.++..+.+.+|..   +-.. .++.|.++|
T Consensus        92 n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL  161 (526)
T PF01602_consen   92 NPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL  161 (526)
T ss_dssp             SHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT
T ss_pred             CHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc
Confidence            4566678899998855 44555555     788889999999999999999999999988854   2222 577888887


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch--H--------
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC--S--------  220 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~--~--------  220 (392)
                       .|+++.|+..|+.++..+ +.++.....+ ...-+..|.+++...++-++.+++.++..++...+...  .        
T Consensus       162 -~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~  238 (526)
T PF01602_consen  162 -SDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN  238 (526)
T ss_dssp             -THSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred             -cCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence             557899999999999999 4444321111 22334455555566677777777777766664333222  0        


Q ss_pred             ---------------HH--------HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          221 ---------------VV--------DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       221 ---------------~l--------~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                                     .+        .-..+++.|+.++.+.+.+++-.++.+|..++...+
T Consensus       239 ~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~  299 (526)
T PF01602_consen  239 LLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP  299 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred             HhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence                           01        112456777788888888888888888888888774

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.78  E-value=0.0013  Score=69.81  Aligned_cols=137  Identities=15%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             hcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHH
Q 016280           86 VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA  165 (392)
Q Consensus        86 ve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~A  165 (392)
                      |..+++.  +-...+..+++++|..++.-|+..+..+|.|++-.-...|..++..||+..|++++.+ .+.++|.+++|+
T Consensus       408 V~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~-~~~n~r~~~~~~  484 (678)
T KOG1293|consen  408 VSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD-PDFNSRANSLWV  484 (678)
T ss_pred             HHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC-CCchHHHHHHHH
Confidence            3333444  6677889999999988999999999999999999877788999999999999998665 688999999999


Q ss_pred             HHHhhcCCccc-HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280          166 ISSLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL  225 (392)
Q Consensus       166 LS~lvR~~~~~-~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~  225 (392)
                      |-.+.-+...- +.++...=+...|..+...++..||+.+..++++|+-+..+..+.+.+.
T Consensus       485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~  545 (678)
T KOG1293|consen  485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK  545 (678)
T ss_pred             HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence            99999886543 3344455567778888899999999999999999997666666666554

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.77  E-value=0.00091  Score=68.02  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=113.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc----CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc
Q 016280          108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  183 (392)
Q Consensus       108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~----g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~  183 (392)
                      ....+..++.-+..|++..+. ||.-+..|.+.    +++..|.+...+ ++.+|......||+|+|..+..++.+|...
T Consensus        51 i~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l  128 (604)
T KOG4500|consen   51 IMTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNL  128 (604)
T ss_pred             eeeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence            344567889999999999984 56666666665    456666666555 478999999999999999999999999999


Q ss_pred             ChHHHHHHhhcC---CC----HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHH
Q 016280          184 NGYAALRDALGS---ES----VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVREAALRGLLEL  253 (392)
Q Consensus       184 gGl~~L~~lL~s---~d----~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E~aL~aL~~L  253 (392)
                      ||-.+++++|++   .+    .++-.-++.+|++-..++.+.+..+.++|+++.|+.++.  -.+....|..+-...++
T Consensus       129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nl  207 (604)
T KOG4500|consen  129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNL  207 (604)
T ss_pred             CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccH
Confidence            998888888875   22    577788888899888888888999999999999988876  34566777777544443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.68  E-value=0.001  Score=67.71  Aligned_cols=183  Identities=19%  Similarity=0.130  Sum_probs=145.7

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHHcC-
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEAN-  141 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-~-------~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g-  141 (392)
                      .++-.++.|+.|....|+-.-.-.|.+.|.++.++.+++. .       .-.+-..++..+.-+....+..|. +...+ 
T Consensus       237 ~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~-L~~~p~  315 (604)
T KOG4500|consen  237 REDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQK-LHADPQ  315 (604)
T ss_pred             ccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHH-HhcCcH
Confidence            3455678899999999988888899999999999999875 2       123455677777777777676666 44444 


Q ss_pred             CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCC
Q 016280          142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENA  216 (392)
Q Consensus       142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~  216 (392)
                      .+..++..+.++ |......+..||+|++|... ....|++.+-+..|+.+|..     ++.+++-.++.+|++|.- ..
T Consensus       316 ~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv  392 (604)
T KOG4500|consen  316 FLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PV  392 (604)
T ss_pred             HHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cC
Confidence            678888888885 67899999999999999865 55678899999999999864     468999999999999986 46


Q ss_pred             cchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          217 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       217 ~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .++..+...|+++.++..++...+.++-+-+.+|.-+...-
T Consensus       393 ~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q  433 (604)
T KOG4500|consen  393 SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ  433 (604)
T ss_pred             CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence            77889999999999999999888888888777775544433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.65  E-value=0.0015  Score=67.27  Aligned_cols=182  Identities=17%  Similarity=0.147  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      ...++..|..++..-+....|.+.+|+++|+.+|+..  ...++-.++-||=-++=+.+ ..+...+.+.++.|+.++..
T Consensus       161 ~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~  239 (429)
T cd00256         161 VQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKE  239 (429)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHh
Confidence            4456788888888888888999999999999999763  45666666666655554433 54555567888888888876


Q ss_pred             CCCHHHHHHHHHHHHHhhcC------------------------------------------------------------
Q 016280          153 DPDVTVRTKALGAISSLIRH------------------------------------------------------------  172 (392)
Q Consensus       153 ~~~~~vr~kAl~ALS~lvR~------------------------------------------------------------  172 (392)
                      ...+.|-+-++.++-|++..                                                            
T Consensus       240 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y  319 (429)
T cd00256         240 STKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEY  319 (429)
T ss_pred             hhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            65556666566555555320                                                            


Q ss_pred             -----------Cc---------ccHHHHHHcC--hHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          173 -----------NK---------PGIEAFRLAN--GYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       173 -----------~~---------~~~~~f~~~g--Gl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                                 .|         .+...|.+.+  -+..|+.+|. |.|+.+..-||+=|..+++..|..+..+.+.|+=.
T Consensus       320 ~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~  399 (429)
T cd00256         320 KSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQ  399 (429)
T ss_pred             HHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHH
Confidence                       11         2233443332  2345677774 56788888899999999999999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .+++|+.++|++|+..||.++..|..++
T Consensus       400 ~vM~Lm~h~d~~Vr~eAL~avQklm~~~  427 (429)
T cd00256         400 RVMRLLNHEDPNVRYEALLAVQKLMVHN  427 (429)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999886554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=97.64  E-value=0.01  Score=65.48  Aligned_cols=164  Identities=12%  Similarity=0.162  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhh-cCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280           73 QDIEDMLDELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        73 e~~~~aL~~L~~lv-e~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      .++..++..+..+. ...|...      +++-+++++.+++.++|....-.+.+.+..+|..  .++   ++..|.+=+.
T Consensus        47 ~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--alL---aINtl~KDl~  115 (746)
T PTZ00429         47 YRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--ALL---AVNTFLQDTT  115 (746)
T ss_pred             HHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HHH---HHHHHHHHcC
Confidence            44445555443333 3334433      4677889999999999999999999999888864  233   2445555444


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM  231 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L  231 (392)
                      + +++.+|.-|+.++|++. . +.    + ..-.+..+.+++.+.++-||++|+.++..|...+++   .+.+.|+++.|
T Consensus       116 d-~Np~IRaLALRtLs~Ir-~-~~----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L  184 (746)
T PTZ00429        116 N-SSPVVRALAVRTMMCIR-V-SS----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDL  184 (746)
T ss_pred             C-CCHHHHHHHHHHHHcCC-c-HH----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHH
Confidence            3 68999999999999964 2 11    1 122566788999999999999999999999876554   55677999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          232 LHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       232 v~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..+|.+.++.|.-.|+.+|..+...++
T Consensus       185 ~~LL~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        185 VELLNDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999987765

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.59  E-value=0.00071  Score=66.88  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=115.9

Q ss_pred             HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh--
Q 016280           77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF--  150 (392)
Q Consensus        77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s----~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL--  150 (392)
                      .++..|..++..-+....-...+.++.++.+|.+    ++.+++..|+.+++++.. ++.++..|.+.|+++.|+.++  
T Consensus       124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~  202 (312)
T PF03224_consen  124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRK  202 (312)
T ss_dssp             HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHh
Confidence            4455555555544333332223456777777654    456788999999999995 577999999999999999999  


Q ss_pred             ----CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCc-chHHHHh
Q 016280          151 ----ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENAS-DCSVVDK  224 (392)
Q Consensus       151 ----~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~  224 (392)
                          .+.....++..+++++-.+.-+ +.....+...+-++.|..+++. ..+|+-+-++..+.+|+...+. ....++.
T Consensus       203 ~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~  281 (312)
T PF03224_consen  203 QATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL  281 (312)
T ss_dssp             --------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             hcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                4445678999999999999865 4566778788899999999875 5699999999999999976554 5667777


Q ss_pred             cCchHHHHHhhcC--CChHHHH
Q 016280          225 LGFPRLMLHLASS--EDPDVRE  244 (392)
Q Consensus       225 ~G~v~~Lv~LL~~--~d~~v~E  244 (392)
                      .|+++.+-.|...  .|+++.+
T Consensus       282 ~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  282 CGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             H-HHHHHHHHHSS--SSHHHHH
T ss_pred             ccHHHHHHHHhcCCCCCHHHHH
Confidence            7877766666542  3555554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.59  E-value=0.00065  Score=69.62  Aligned_cols=159  Identities=17%  Similarity=0.167  Sum_probs=128.1

Q ss_pred             HcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280           97 SIGGLAPLLGYLKNSH--ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus        97 ~lGgl~~Ll~lL~s~~--~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      .-||+..|++++.+++  ..+|..|+.+|-.|..  ...++.|...| +..++.+......++.++..+.-|.++-.|..
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            3599999999999876  4579999999987754  23456666665 66666665544567889999999999999998


Q ss_pred             ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          175 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       175 ~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      .....++..||+..++......++.+.+.++.+|.+++-+ .-..+..+++..+.+.|..|..+.|.-+|-+|.-+++.|
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence            8888889999999999888888999999999999988754 334466788888888898888888888999998888888


Q ss_pred             HcCCC
Q 016280          254 AREKA  258 (392)
Q Consensus       254 ~~~~~  258 (392)
                      ++...
T Consensus       335 at~KE  339 (832)
T KOG3678|consen  335 ATNKE  339 (832)
T ss_pred             hhhhh
Confidence            77654

>PF05536 Neurochondrin: Neurochondrin

Probab=97.48  E-value=0.01  Score=63.31  Aligned_cols=155  Identities=18%  Similarity=0.167  Sum_probs=122.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH---HHHHHHcCCHHHHHHhhCCC------CCHHHHHHHHHHHHHhhc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS---QQLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIR  171 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~---Q~~vl~~g~l~~Ll~LL~s~------~~~~vr~kAl~ALS~lvR  171 (392)
                      +.-++.+|++.+.+=|-.+.-++..++.+.+..   ++.|.+.=|.+=|-+||.+.      +....+.=|+.-|+++|+
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            566788999988888999999999999987743   33577776665555666652      235688888999999998


Q ss_pred             CCcccHHHHHHcChHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280          172 HNKPGIEAFRLANGYAALRDALGSESV-KFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL  250 (392)
Q Consensus       172 ~~~~~~~~f~~~gGl~~L~~lL~s~d~-kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL  250 (392)
                      . +.....---.+-+|.|+.++.+.+. .+...|...|..++ ..+..++.+.+.|.++.|++.+.+ +...+|.|+.+|
T Consensus        87 ~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 D-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             C-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            4 3222222235679999999987666 99999999999999 578889999999999999999888 777899999999


Q ss_pred             HHHHcCCC
Q 016280          251 LELAREKA  258 (392)
Q Consensus       251 ~~L~~~~~  258 (392)
                      .+++....
T Consensus       164 ~~Lls~~~  171 (543)
T PF05536_consen  164 LNLLSRLG  171 (543)
T ss_pred             HHHHHhcc
Confidence            99887655

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=97.48  E-value=0.0008  Score=76.39  Aligned_cols=181  Identities=15%  Similarity=0.190  Sum_probs=137.3

Q ss_pred             HHHHHHHHhhcCCC------ChHHHHHcCChHHHHHhh-cCCC-HHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHH
Q 016280           77 DMLDELQEHVESID------MANDLHSIGGLAPLLGYL-KNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLL  147 (392)
Q Consensus        77 ~aL~~L~~lve~iD------nA~d~~~lGgl~~Ll~lL-~s~~-~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll  147 (392)
                      ++++.+.-++.|+-      ....|-..|-+..|..+- .... ..++ ....+|=|++.+..+.+..|-.- |+|.-|+
T Consensus       409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLK-avLSALWNLSAHcteNKA~iCaVDGALaFLV  487 (2195)
T KOG2122|consen  409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLK-AVLSALWNLSAHCTENKAEICAVDGALAFLV  487 (2195)
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHH-HHHHHHhhhhhcccccchhhhcccchHHHHH
Confidence            44555555666553      355677788888888754 3333 3343 33444444555544445555544 8899999


Q ss_pred             HhhCCCC--C-HHHHHHH---HHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280          148 SNFASDP--D-VTVRTKA---LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV  221 (392)
Q Consensus       148 ~LL~s~~--~-~~vr~kA---l~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~  221 (392)
                      .+|.-+.  + ..+...|   |.-+|+++-.+.+..+...+.+-+..|++.|+|....+-..+|..|-+|...++.+++.
T Consensus       488 g~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~  567 (2195)
T KOG2122|consen  488 GTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQM  567 (2195)
T ss_pred             hhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHH
Confidence            9987541  1 2233333   66677888888888888889999999999999999999999999999999999999999


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.+.|.|+.|-+|+++.+..+-+-++.+|.||...-+
T Consensus       568 LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  568 LWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999988775

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.42  E-value=0.00027  Score=47.69  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280           90 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ  128 (392)
Q Consensus        90 DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq  128 (392)
                      +++..+.+.||+++|+.+|.+++.+++..|+|+|++++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            477889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.42  E-value=0.0027  Score=67.21  Aligned_cols=161  Identities=19%  Similarity=0.219  Sum_probs=98.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ...++...+ .+...+..|+..|......-|..|+..     |..++.|.. |.|..||+.|+-.|..+|++++..... 
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~k-   96 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSK-   96 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHH-
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhH-
Confidence            344455544 468899999999999999999999864     557888866 468999999999999999998765555 


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  260 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~  260 (392)
                          -..+|+++|++++..-..-+-..|..|+..++...-    .|++.++..- .+++..+||+++..|..-...-...
T Consensus        97 ----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL----~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   97 ----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL----TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             ----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             ----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHH
Confidence                467899999999877777777777777765433210    1222222211 2567889999999887655544322


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhh
Q 016280          261 SAIKLAEDNEKLKQLLGERIKG  282 (392)
Q Consensus       261 ~~~~~~~~~~~L~~~L~~~~~~  282 (392)
                      ..    .|..+..+.+...++.
T Consensus       168 ~~----~p~~E~e~~i~~~ikk  185 (556)
T PF05918_consen  168 LL----TPQKEMEEFIVDEIKK  185 (556)
T ss_dssp             TS-------HHHHHHHHHHHHH
T ss_pred             Hh----hchHHHHHHHHHHHHH
Confidence            21    2333445555555443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.37  E-value=0.0077  Score=61.20  Aligned_cols=182  Identities=16%  Similarity=0.136  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      +--+..+|..++.--...-.|+...|+..++..|.+.  +-.++-+.+.|+=-+.-| |...+.+...+.++.|..++.+
T Consensus       174 ~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~  252 (442)
T KOG2759|consen  174 IQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKE  252 (442)
T ss_pred             HHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHH
Confidence            3345556666666666777888899999999887443  455666666666666654 4444656666788888888776


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCc----------------------------------------------------------
Q 016280          153 DPDVTVRTKALGAISSLIRHNK----------------------------------------------------------  174 (392)
Q Consensus       153 ~~~~~vr~kAl~ALS~lvR~~~----------------------------------------------------------  174 (392)
                      ...+.|-+-.+..+.|++-..+                                                          
T Consensus       253 ~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY  332 (442)
T KOG2759|consen  253 STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEY  332 (442)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            5545555555555555432110                                                          


Q ss_pred             ----------------------ccHHHHHH--cChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          175 ----------------------PGIEAFRL--ANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       175 ----------------------~~~~~f~~--~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                                            .+...|.+  ..-+.+|+.+|++. |+.+.--||+=|...++..|..+..+.+.|+=+
T Consensus       333 ~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe  412 (442)
T KOG2759|consen  333 KSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKE  412 (442)
T ss_pred             HHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHH
Confidence                                  11222222  22456677777754 578888899999999999999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .++.|+.++|++|+-+|+.|+..|..++
T Consensus       413 ~vM~Llnh~d~~Vry~ALlavQ~lm~~~  440 (442)
T KOG2759|consen  413 RVMNLLNHEDPEVRYHALLAVQKLMVHN  440 (442)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998876554

>PTZ00429 beta-adaptin; Provisional

Probab=97.34  E-value=0.043  Score=60.59  Aligned_cols=145  Identities=16%  Similarity=0.092  Sum_probs=103.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  181 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~  181 (392)
                      .++.++|.+.++-||..|+.++..+-+.+|..   +.+.|.++.|..+|. |.++.|...|+.+|..+....+...  -.
T Consensus       143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pel---v~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l--~l  216 (746)
T PTZ00429        143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL---FYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKI--ES  216 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc---ccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhh--HH
Confidence            44556788899999999999999999988843   446677888888765 5788999999999999986654322  12


Q ss_pred             HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ..+-+.-|...+..-++-.|...+.+|...   .+.+...  ...++..+...|++.+..|.-.|++++.++....
T Consensus       217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~  287 (746)
T PTZ00429        217 SNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC  287 (746)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence            344455566666666777777766666442   2332222  1356777888888888888888888888887653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.33  E-value=0.00068  Score=57.84  Aligned_cols=102  Identities=17%  Similarity=0.348  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcC
Q 016280            9 DGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVES   88 (392)
Q Consensus         9 ~gLLkwsi~~sd~~~~~~~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~   88 (392)
                      .|.|.||--|++           +.=|-++|.+= ..+..+.+|..+.++....        ++..+..|..+|.++|..
T Consensus        15 sg~L~WSP~H~s-----------e~FW~ENa~kf-~~~~~~llk~L~~lL~~s~--------d~~~laVac~Dig~~vr~   74 (119)
T PF11698_consen   15 SGHLEWSPVHKS-----------EKFWRENADKF-EENNFELLKKLIKLLDKSD--------DPTTLAVACHDIGEFVRH   74 (119)
T ss_dssp             HT-----GGGG------------HHHHHHHSGGG-SSGGGHHHHHHHHHH-SHH--------HHHHHHHHHHHHHHHHHH
T ss_pred             cCCccccCCCCC-----------ccHHHHHHHHH-HHcccHHHHHHHHHHccCC--------CcceeehhhcchHHHHHH
Confidence            477889888875           23566666554 4556788888888875432        345667899999999999


Q ss_pred             CCChHHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016280           89 IDMANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN  130 (392)
Q Consensus        89 iDnA~d~~-~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN  130 (392)
                      .++.+.++ ++|+=..++.|+.+++++||..|..++..+..+|
T Consensus        75 ~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~  117 (119)
T PF11698_consen   75 YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN  117 (119)
T ss_dssp             -GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred             ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999888 5677777889999999999999999999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.30  E-value=0.039  Score=56.19  Aligned_cols=157  Identities=15%  Similarity=0.123  Sum_probs=114.7

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC-HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANG-LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~-l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      -.+.+.+++|...+.-+...++++|+.++++.+..-. -.+... ...|-.++.+..+.....-|+.+|..++|. ++-+
T Consensus       114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR  191 (442)
T KOG2759|consen  114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYR  191 (442)
T ss_pred             cchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchh
Confidence            3489999999999999999999999999986542211 001111 122333444444556778889999999997 4578


Q ss_pred             HHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELA  254 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~  254 (392)
                      ..|+.++|+..++..+.|.  +..+|=..++++--|+- ++...+.+...+.++.|..++++ .-..|..-++.++.|+.
T Consensus       192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll  270 (442)
T KOG2759|consen  192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL  270 (442)
T ss_pred             heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999543  57788888888876664 45556777788999999999985 34556666777778887


Q ss_pred             cCCC
Q 016280          255 REKA  258 (392)
Q Consensus       255 ~~~~  258 (392)
                      ...+
T Consensus       271 ~k~~  274 (442)
T KOG2759|consen  271 DKGP  274 (442)
T ss_pred             ccCc
Confidence            7774

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.28  E-value=0.0088  Score=60.81  Aligned_cols=182  Identities=16%  Similarity=0.173  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ...|++.||.-+..+++-.+..+. ...|.+..++.+.++++..+|..|...|..++--||..   +.++||+..|++.+
T Consensus        81 ~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l  156 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRAL  156 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHH
Confidence            457889999999888886544443 47788899999999999999999999999999999954   88999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-------CH--HHHHHHHHHHHHHhhcCCcchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-------SV--KFQRKALNLIQYLLNENASDCSV  221 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-------d~--kl~~kA~~lLs~L~~~~~~~~~~  221 (392)
                      .. ...++....+.++=.+. ++|...+.+...--++.+..-+.+.       +.  ..-..+..++..++..=+.-.-.
T Consensus       157 ~d-~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l  234 (371)
T PF14664_consen  157 ID-GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL  234 (371)
T ss_pred             Hh-ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence            76 34456677777777777 4555555554434555555444322       22  34556778888888764443221


Q ss_pred             HH-hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          222 VD-KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       222 l~-~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      -. +...++.|+..|..+.+.+|+..+..+..+-.-.+
T Consensus       235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~  272 (371)
T PF14664_consen  235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP  272 (371)
T ss_pred             ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence            11 22578999999999999999999999999866444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.0025  Score=70.64  Aligned_cols=170  Identities=19%  Similarity=0.129  Sum_probs=137.6

Q ss_pred             CCChHHHHHcCChHHHHHhhcC-C--CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHH
Q 016280           89 IDMANDLHSIGGLAPLLGYLKN-S--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA  165 (392)
Q Consensus        89 iDnA~d~~~lGgl~~Ll~lL~s-~--~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~A  165 (392)
                      ..+.-|++|-+|-..++..|.. +  +++-|..|+.+|+.++.|-+.-|+..++.+.+..-+..|..++.+-+|.=++-+
T Consensus       544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic  623 (1387)
T KOG1517|consen  544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC  623 (1387)
T ss_pred             chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence            4567899999999999998876 2  578999999999999999999999999999999888887775556788888888


Q ss_pred             HHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----CcchHHH------------HhcCch-
Q 016280          166 ISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----ASDCSVV------------DKLGFP-  228 (392)
Q Consensus       166 LS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~----~~~~~~l------------~~~G~v-  228 (392)
                      |+-|=.++..++-.-...++...|..+|..+.++||..|+|+|..++...    .+....+            ++.-+. 
T Consensus       624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~  703 (1387)
T KOG1517|consen  624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIK  703 (1387)
T ss_pred             HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHh
Confidence            99998899988888888999999999999999999999999999999752    2222111            121222 


Q ss_pred             --HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          229 --RLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       229 --~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                        -.++.+++...+-++..+.-+|..++.+..
T Consensus       704 ~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~  735 (1387)
T KOG1517|consen  704 GLMSLLALVSDGSPLVRTEVVVALSHFVVGYV  735 (1387)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence              245666777788888888888888877665

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.00097  Score=69.34  Aligned_cols=138  Identities=9%  Similarity=-0.007  Sum_probs=108.2

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCH
Q 016280          119 AGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV  198 (392)
Q Consensus       119 Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~  198 (392)
                      ++.+|-.+...-...+--+..+....+|+++|.+ ++.-+.--++.+|.+.+-.+.+-+..|+..|-+.+|+.++.++|.
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            3444455554444444445556677889999876 566677788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          199 KFQRKALNLIQYLLNENASDC-SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       199 kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .+|.+..|.++++.-+..... =.+...-.+..++.+..+++..||+.++..|.|+.-+.
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~  547 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT  547 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence            999999999999986544332 13344445788999999999999999999999987643

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.01  Score=64.23  Aligned_cols=185  Identities=19%  Similarity=0.231  Sum_probs=140.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCC--------HH-------
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNN--------PR-------  132 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s--~~~~IR~~Aa~vLg~iaqNN--------p~-------  132 (392)
                      .-++++..|+.-|.-+...   =+.-+-.-|+++|+..|+.  .++++-..|...+..+..+.        +.       
T Consensus        35 TL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~  111 (970)
T KOG0946|consen   35 TLLEDRRDAVRGLKAFSRK---YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL  111 (970)
T ss_pred             cchhhHHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence            3457777776666554331   1333456789999999976  58999999999998888754        22       


Q ss_pred             -HHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-HHHHH-cChHHHHHHhhcCCCHHHHHHHHHHH
Q 016280          133 -SQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRL-ANGYAALRDALGSESVKFQRKALNLI  208 (392)
Q Consensus       133 -~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lL  208 (392)
                       +.+.+++. +-|..|+..+.. .|-.||..++--|++++++.+.-. ..+.. .-|+.-|+.+|.....-+|-.|..+|
T Consensus       112 ~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL  190 (970)
T KOG0946|consen  112 WIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL  190 (970)
T ss_pred             HHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence             23444443 667777777665 478999999999999999877654 44443 46999999999999999999999999


Q ss_pred             HHHhhcCCcchHHHHhcCchHHHHHhhcCC---C-hHHHHHHHHHHHHHHcCCC
Q 016280          209 QYLLNENASDCSVVDKLGFPRLMLHLASSE---D-PDVREAALRGLLELAREKA  258 (392)
Q Consensus       209 s~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~---d-~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..|+.+++.....+.=.++...|..++..+   | --|.+-|+..|.+|.+++.
T Consensus       191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~  244 (970)
T KOG0946|consen  191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI  244 (970)
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence            999998777776666678899999998743   2 2478999999999988765

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.22  E-value=0.0037  Score=54.66  Aligned_cols=128  Identities=12%  Similarity=0.126  Sum_probs=100.0

Q ss_pred             HHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          102 APLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       102 ~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ..|+. +-+..+.+-+++..-=|++.|- .|..-..+.+.+++..++..|.. ++..+...++.+|+|+|-. +.+.+.+
T Consensus        19 q~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d-~~n~~~I   95 (173)
T KOG4646|consen   19 QHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLD-KTNAKFI   95 (173)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence            34443 3344677777777767777775 47777888899999999998776 5889999999999999975 4567777


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML  232 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv  232 (392)
                      +.++|++.++.++.|+...+--.|+.++.+|+..+...++.+..-.+++.+.
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~  147 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ  147 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence            8999999999999999988888999999999987777777666555444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.21  E-value=0.0063  Score=65.54  Aligned_cols=150  Identities=17%  Similarity=0.208  Sum_probs=107.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  181 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~-vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~  181 (392)
                      ++..|++..+.+|.+|+.+++.++---..|++. .+. .|.+  |..-|.. ..++|.-..+.||.+++.-..- .+.+-
T Consensus       804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge-eypEvLgsILgAikaI~nvigm-~km~p  879 (1172)
T KOG0213|consen  804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE-EYPEVLGSILGAIKAIVNVIGM-TKMTP  879 (1172)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc-ccHHHHHHHHHHHHHHHHhccc-cccCC
Confidence            345788999999999999999998655555552 222 2332  5566665 4677777777777776643210 00110


Q ss_pred             -HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          182 -LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       182 -~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                       ..+-+|-|..+|++...|++..+.-++..++...++....=.=+-++=-|+++|++-...+|..|..+++.|++--
T Consensus       880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence             3456788999999999999999999999999887775433233345556888888888999999999999988754

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.16  E-value=0.00071  Score=49.14  Aligned_cols=55  Identities=20%  Similarity=0.090  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016280          156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL  211 (392)
Q Consensus       156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L  211 (392)
                      +.+|..|+++|++++.+.+..... .....++.|..+|.+++..||..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            368999999999998877665555 4677999999999999999999999999865

...

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.02  Score=61.87  Aligned_cols=173  Identities=15%  Similarity=0.150  Sum_probs=115.0

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-HHHHHcC
Q 016280          106 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRLAN  184 (392)
Q Consensus       106 ~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~~g  184 (392)
                      .-+++++=.-|..|+.+.|.+-..-...+-.-+..+++|.++.++. |++..++..+.|+++.++.+.+... .......
T Consensus       371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~  449 (859)
T KOG1241|consen  371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQS  449 (859)
T ss_pred             HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence            3667888889999999999998765555555666789999999866 7888999999999999998876432 2223344


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhcCchHHH-HHhhcC------CChHHHHHHHHHHHH
Q 016280          185 GYAALRDALGSESVKFQRKALNLIQYLLNENASD-----CSVVDKLGFPRLM-LHLASS------EDPDVREAALRGLLE  252 (392)
Q Consensus       185 Gl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-----~~~l~~~G~v~~L-v~LL~~------~d~~v~E~aL~aL~~  252 (392)
                      -+++++.-|. +.+++-.++||++.+|+..-.+.     ...... .+.+.+ -.|++.      .+..+|..|-.||..
T Consensus       450 ~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE  527 (859)
T KOG1241|consen  450 KLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME  527 (859)
T ss_pred             HHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            5555555554 46899999999999998542221     001111 122222 234432      346799999999999


Q ss_pred             HHcCCChhhhhhhhhhHHHHHHHHHHHHh
Q 016280          253 LAREKADGSAIKLAEDNEKLKQLLGERIK  281 (392)
Q Consensus       253 L~~~~~~~~~~~~~~~~~~L~~~L~~~~~  281 (392)
                      |++.+++.+.....+........|.+-++
T Consensus       528 lIk~st~~vy~~v~~~~l~il~kl~q~i~  556 (859)
T KOG1241|consen  528 LIKNSTDDVYPMVQKLTLVILEKLDQTIS  556 (859)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999865333223333333444444444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.14  E-value=0.0016  Score=54.23  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280          158 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKL  225 (392)
Q Consensus       158 vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~  225 (392)
                      +|...+..|++++-.++..+..+...||++.+..+..-  .++-+++.|.|+|++|+.+++++++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            46778889999999999999999999999999988653  569999999999999999998888766654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.05  E-value=0.0095  Score=53.42  Aligned_cols=127  Identities=16%  Similarity=0.193  Sum_probs=102.1

Q ss_pred             ChHHHHHcCChHHHHHhhcCCC------HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC-CHHHHHHHH
Q 016280           91 MANDLHSIGGLAPLLGYLKNSH------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-DVTVRTKAL  163 (392)
Q Consensus        91 nA~d~~~lGgl~~Ll~lL~s~~------~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~-~~~vr~kAl  163 (392)
                      .|..|++.||+..|+..++++.      .++-..+..+.-.+....- +....+....+.+.+..+.... +..+...|+
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            5889999999999999998754      4777778888777777653 3334556666778888776544 678999999


Q ss_pred             HHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       164 ~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      .-|=+++-+.+.....+...=-++-|+..|+..+..++.+|..++-.|....++.
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            9999999887766777767778889999999999999999999999998765554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.05  E-value=0.0016  Score=55.64  Aligned_cols=73  Identities=19%  Similarity=0.210  Sum_probs=62.6

Q ss_pred             CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      .+..|+++|.+..|+.+..-|++-|+.+||++|.+...+-..||-..++.+|.++|+.||..|+.++..|..+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            4788999997656888889999999999999999888877889999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.03  E-value=0.022  Score=59.35  Aligned_cols=249  Identities=15%  Similarity=0.146  Sum_probs=152.5

Q ss_pred             HHHHHHhhcCCCChHHHHHcCChHHHHHhh----------cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           79 LDELQEHVESIDMANDLHSIGGLAPLLGYL----------KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        79 L~~L~~lve~iDnA~d~~~lGgl~~Ll~lL----------~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      |+.|.-|-.+-.++..+..-.|+..|+.+-          ..++..+...|..||+|+.-++|..|+.+.+.|+...++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            455666666666777777766677776554          3468899999999999999999999999999999999999


Q ss_pred             hhCCCC----CH---HHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-----------------CCHHHHHHH
Q 016280          149 NFASDP----DV---TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-----------------ESVKFQRKA  204 (392)
Q Consensus       149 LL~s~~----~~---~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-----------------~d~kl~~kA  204 (392)
                      .|....    +.   .+-.+.+|-+.++...  ...+.+-+.+|+..|...|..                 .+..+...+
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~--~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPD--DRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChh--HHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            988651    22   2444555544443322  122334456888887766542                 123445667


Q ss_pred             HHHHHHHhhcCCcchHHHHhcCchHHHHHhhc---------CCChHHHHHHHHHHHHHHcCCChh------------hhh
Q 016280          205 LNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---------SEDPDVREAALRGLLELAREKADG------------SAI  263 (392)
Q Consensus       205 ~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~---------~~d~~v~E~aL~aL~~L~~~~~~~------------~~~  263 (392)
                      +-++-++....+.... -.....++.++.++.         .+-...+-++.++|.++--.+...            ...
T Consensus       160 LKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence            7777777755444332 122234444444432         223567888889998872211110            000


Q ss_pred             hhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCcccccc-ceeeccCCCC--CCcccccc
Q 016280          264 KLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDK-GLLVLPGEDA--PPPDVASK  336 (392)
Q Consensus       264 ~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~-~~~~~~~~~~--~~~~~~~~  336 (392)
                      .--.....|...|+.++.......      ..+.+.=+=.++..++.....+|+- -.++||.+..  .||+.-..
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~------l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~t  308 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALK------LDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDT  308 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCccc------chhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcc
Confidence            002334667777888777654221      1222222445566666666888888 8889998864  77776443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.97  E-value=0.2  Score=49.75  Aligned_cols=181  Identities=20%  Similarity=0.119  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHH---cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHHcCCHHH
Q 016280           72 PQDIEDMLDELQEHVESIDMANDLHS---IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEANGLEP  145 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iDnA~d~~~---lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN---Np~~Q~~vl~~g~l~~  145 (392)
                      ..-++.+|..|..++...-. -+|+.   .-.+..+++.++.+..+-+..|+.+++-++=.   ..... .+++ ...|.
T Consensus        57 ~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~-ei~~-~~~~~  133 (309)
T PF05004_consen   57 SSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE-EIFE-ELKPV  133 (309)
T ss_pred             HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH-HHHH-HHHHH
Confidence            45677888888877754433 34442   23466777888887777788888988887532   23343 3554 35667


Q ss_pred             HHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHH--HHHhhcC----------CCHHHHHHHHHHHHHH
Q 016280          146 LLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAA--LRDALGS----------ESVKFQRKALNLIQYL  211 (392)
Q Consensus       146 Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~--L~~lL~s----------~d~kl~~kA~~lLs~L  211 (392)
                      |.+.+... ....+|..++.||+-++.-......... ....+..  ....+++          ++..+...|+...+-|
T Consensus       134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL  213 (309)
T PF05004_consen  134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL  213 (309)
T ss_pred             HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence            77766543 3457788888888865432111112211 1122221  1111221          2357888888888888


Q ss_pred             hhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          212 LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       212 ~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ++.-+...-.-.-...++.|+.+|.++|.+||-.|-.+|.-|..
T Consensus       214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            86544421111112468999999999999999888877765533

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>TIGR02270 conserved hypothetical protein

Probab=96.87  E-value=0.011  Score=60.77  Aligned_cols=118  Identities=21%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      +..|+..|.++++.+|..++..||.+-           .....+.|+.+|.+ .++.+|..++.+++.  |+        
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~-~~p~vR~aal~al~~--r~--------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAA-SEPPGRAIGLAALGA--HR--------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcC-CChHHHHHHHHHHHh--hc--------
Confidence            778888888888888888888888542           12345667777755 577888877766665  11        


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                        ..-++.|..+|++.+..|+..|+.+|.+|-..           ..++.|...+.+.++.||..|+.++..+
T Consensus       146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       146 --HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             --cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence              12345678888888999999999998887542           3455577778888899998888887665

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.03  Score=55.61  Aligned_cols=152  Identities=20%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH--HHHH--HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP--RSQQ--LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG  176 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp--~~Q~--~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~  176 (392)
                      .+.|-.-|.+++..|+..||.-||.+..|..  .+-+  .|++.+.++.++..+.. .+.+|...|.-.|+.+.+ ++.+
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh-cHHH
Confidence            4556667889999999999999999999876  2222  24577888888888776 478999999999999997 4666


Q ss_pred             HHHHHHcChHHHH--HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHH
Q 016280          177 IEAFRLANGYAAL--RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLEL  253 (392)
Q Consensus       177 ~~~f~~~gGl~~L--~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L  253 (392)
                      ...+...+-+..+  +.+-...+.-.|.+...+|-.+.+-.+.......+.|++..|..-|+. .|.-++-.++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            6666665544433  333333456677788888888887777777777778888887776664 5555556665555555


Q ss_pred             H
Q 016280          254 A  254 (392)
Q Consensus       254 ~  254 (392)
                      +
T Consensus       242 a  242 (524)
T KOG4413|consen  242 A  242 (524)
T ss_pred             H
Confidence            3

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.84  E-value=0.026  Score=54.46  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280          156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL  234 (392)
Q Consensus       156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L  234 (392)
                      ......|+..|-.+|--||+.+..|....++.+|+++|. +....++..++.+|.+++-+++.+...|.+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            345677888888888889999999999999999999995 4679999999999999999999999999999999999999


Q ss_pred             hcC--CChHHHHHHHHHHHHHHcCCC
Q 016280          235 ASS--EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       235 L~~--~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +++  .+.+++-+++..|.-......
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~E~  210 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMPET  210 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcccC
Confidence            985  467899999988887666554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.79  E-value=0.003  Score=42.40  Aligned_cols=37  Identities=27%  Similarity=0.197  Sum_probs=34.3

Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      ....++..||++.|+.+|++.+.+++..|+++|++|+
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            5667889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.72  E-value=0.044  Score=60.03  Aligned_cols=140  Identities=19%  Similarity=0.282  Sum_probs=113.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ++-+++...+.+.++|...---+-..++.+|  +++++.   ++.+.+=+. ++++.+|..|+.++|.+ |..     ++
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLa---vNti~kDl~-d~N~~iR~~AlR~ls~l-~~~-----el  124 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLA---VNTIQKDLQ-DPNEEIRGFALRTLSLL-RVK-----EL  124 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHH---HHHHHhhcc-CCCHHHHHHHHHHHHhc-ChH-----HH
Confidence            5667787778899999999999999999999  445543   444444444 47899999999999986 332     22


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                       ....++.+.+++.+++..||+.|+.++..+-+-   +...+.+.|.+..+..++.+.++.+...|+.+|..+...
T Consensus       125 -~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         125 -LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence             334688999999999999999999999999864   455788899999999999999999999999999887665

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=96.58  E-value=0.024  Score=49.71  Aligned_cols=116  Identities=11%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280          141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS  220 (392)
Q Consensus       141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~  220 (392)
                      +.+..|+.-+...++.+.+...+--|+|.+. .|.+.......+.+.+.+..|...+..+..-+...|.++|- ++.+.+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence            4578889888888889999999999999885 47788889999999999999999999999999999999996 477788


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+.+.+.++.++..+.++...+...++.++.-|.-..-
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R  131 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER  131 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999888888888888877766554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.57  E-value=0.023  Score=56.21  Aligned_cols=67  Identities=30%  Similarity=0.344  Sum_probs=52.3

Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ...++.+...+.+.+..+|..|+.+|..+..++         ..+++.+...+.+++..++..++.+|+.+-....
T Consensus       179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~  245 (335)
T COG1413         179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDEEA  245 (335)
T ss_pred             hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchh
Confidence            346777888888888899999999998887653         3456778888889999999998888877644443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.032  Score=62.27  Aligned_cols=140  Identities=21%  Similarity=0.227  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHH----cCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHH
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHS----IGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE  144 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~----lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~  144 (392)
                      +.+..+.+|..|++++. +.|.|..|-.    +|-++.++.+|.+ .++.|+..|..+|..+..|-| |-+.+...|.+.
T Consensus      1738 s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLT 1816 (2235)
T ss_pred             hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHH
Confidence            44567889999999988 5577877653    7889999998865 889999999999998887765 667788999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-cCCCHHHHHHHHHHHHHHhhc
Q 016280          145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      .|+.+|-+.  ++.|..++..|-++..+ +....+-...||+..|..++ .+.....|..|+.++..|..+
T Consensus      1817 ~LL~lLHS~--PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1817 TLLTLLHSQ--PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHHHHHhcC--hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            999998874  56777776666666544 34455556899998888776 456789999999999999864

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.041  Score=61.00  Aligned_cols=108  Identities=15%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC-hH--HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDM-AN--DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn-A~--d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      .+-.+++||..+..+++-+.- +.  +....=.+..+...++++.--+|++|||+++..+.-+=+.+..+.  .++....
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~  508 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTH  508 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHH
Confidence            445677777777777754421 11  222222345566777888889999999999999942212222222  2455566


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      +.|.++.+.-||+.|+.||.+++++++.+..++
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~  541 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKV  541 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence            677766778899999999999999988664444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.02  Score=59.21  Aligned_cols=122  Identities=14%  Similarity=0.068  Sum_probs=96.3

Q ss_pred             CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHH
Q 016280           88 SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS  167 (392)
Q Consensus        88 ~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS  167 (392)
                      -.+|.+++..+|.++-|+++..+.++++|.....++=+++-+.- .+...+..|.+|.|..++.+++...+..+.+|-+|
T Consensus       334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S  412 (791)
T KOG1222|consen  334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS  412 (791)
T ss_pred             hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence            44899999999999999999999999999999999999986543 55667889999999999999887788899999888


Q ss_pred             HhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhc
Q 016280          168 SLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       168 ~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~  214 (392)
                      +=    ......|.-...++.+...+-+ .+.++-.....+.-+|+.+
T Consensus       413 ~d----D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  413 CD----DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             cC----cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            72    3455667777788887766543 4566655555555566643

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.43  E-value=0.065  Score=48.34  Aligned_cols=109  Identities=22%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc-HHHHHHcChHHHHHHhhcC---------CCHHHHHHHHHHHHHHh
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGS---------ESVKFQRKALNLIQYLL  212 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~-~~~f~~~gGl~~L~~lL~s---------~d~kl~~kA~~lLs~L~  212 (392)
                      ...++..+.+.+.   ..+.+..|.-.+|..+.. ...|+..||+..|..+|..         .+..+...++..|..|+
T Consensus        68 p~~~i~~L~~~~~---~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRPS---TSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT-----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCc---cHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4457777766432   228888888888987654 6899999999999998874         24578888999999998


Q ss_pred             hcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          213 NENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       213 ~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      .........+...+++..++..|.+++..++..|+..|..++
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            654333334445689999999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.41  E-value=0.015  Score=61.55  Aligned_cols=152  Identities=13%  Similarity=0.154  Sum_probs=104.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      ..++.+|+|..+.+|.+|+...|.++.   ++-+.. .+.+.|.+  |..-|.. ..+++.-..+.||.|+..-+....-
T Consensus       607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~i--LyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNI--LYENLGE-DYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHH--HHHhcCc-ccHHHHHHHHHHHHHHhhhhccccc
Confidence            344678899999999999999998874   222221 12233333  4555555 3667777666666666533211100


Q ss_pred             HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +==..|-+|.|..+|.++..|+......++.-++...++....=.=+-++=-|+.+|++-+..+|..|..+++.|++--
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            0013577889999999999999999999999999887775332222345556788888989999999999999888754

>TIGR02270 conserved hypothetical protein

Probab=96.38  E-value=0.16  Score=52.31  Aligned_cols=159  Identities=20%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      .+.|+.+|.+.++.+|..+..+++..            .....+.|+.+|. +.+..|+..|+.+|+.+-+.        
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r------------~~~~~~~L~~~L~-d~d~~Vra~A~raLG~l~~~--------  177 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAH------------RHDPGPALEAALT-HEDALVRAAALRALGELPRR--------  177 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhh------------ccChHHHHHHHhc-CCCHHHHHHHHHHHHhhccc--------
Confidence            57788999999999998888777761            1234567888876 57899999999999987543        


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-------------CCcch---HHHHhc----CchHHHHHhhcCCCh
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNE-------------NASDC---SVVDKL----GFPRLMLHLASSEDP  240 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-------------~~~~~---~~l~~~----G~v~~Lv~LL~~~d~  240 (392)
                         ..++.|..++.+.++.||.-|++.+..+-..             +....   ..+...    ..++.|..+++.+. 
T Consensus       178 ---~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~-  253 (410)
T TIGR02270       178 ---LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA-  253 (410)
T ss_pred             ---cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh-
Confidence               2444577789999999999999888665210             00000   111111    34566666766644 


Q ss_pred             HHHHHHHHHHHHHHcCCCh-hhhhhhhhhHHHHHHHHHHHHhhhcCCC
Q 016280          241 DVREAALRGLLELAREKAD-GSAIKLAEDNEKLKQLLGERIKGISLMS  287 (392)
Q Consensus       241 ~v~E~aL~aL~~L~~~~~~-~~~~~~~~~~~~L~~~L~~~~~~i~~~~  287 (392)
                       +++.++.+|+.+-...-- .....+.+  ..++..-.+-++.|.+++
T Consensus       254 -vr~~a~~AlG~lg~p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       254 -TRREALRAVGLVGDVEAAPWCLEAMRE--PPWARLAGEAFSLITGMD  298 (410)
T ss_pred             -hHHHHHHHHHHcCCcchHHHHHHHhcC--cHHHHHHHHHHHHhhCCC
Confidence             899999999976554431 11111122  226777777888888864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.02  Score=59.83  Aligned_cols=183  Identities=13%  Similarity=0.067  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280           74 DIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      +...++..|..+...+-. ..-+......++|+.+|..|+--|..-+...|.+.+---...|..+++.|.+..|+.++.+
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            344444444444332211 1222334456888999998888888888888888887777799999999999999999886


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCccc-HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC---CcchHHHHhcC--
Q 016280          153 DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN---ASDCSVVDKLG--  226 (392)
Q Consensus       153 ~~~~~vr~kAl~ALS~lvR~~~~~-~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~---~~~~~~l~~~G--  226 (392)
                       .|..+|.+.+|.+-.++-|+... +-+|+...|+..++.+...++-+++.....++++++-+.   ...++.+.++.  
T Consensus       485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence             47799999999999999887654 457788999999999999999999999999999997421   22344444442  


Q ss_pred             --chHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          227 --FPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       227 --~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                        +.+.|+.-+...++-..+..+-.|.+++..+
T Consensus       564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d  596 (743)
T COG5369         564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACD  596 (743)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhcc
Confidence              3344555555555444444456666655544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.36  E-value=0.22  Score=46.37  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=90.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCC--HHHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280          109 KNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN  184 (392)
Q Consensus       109 ~s~~~~IR~~Aa~vLg~iaqNN--p~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g  184 (392)
                      .+.+=+.|..|..-|..++..+  ......+++.  ..+..++..+.+ ....+...|+.+|+.++++.......+ ...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPY-ADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence            4456678888888888887766  2222333322  344555555443 456788999999999998876666555 445


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          185 GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       185 Gl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      -++.|+..+.++..-++..|..+|..++...+.....     +++.+...+.+.++.+|..++..|..+....+
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            7888999999988999999999999999764411111     15667777889999999999999999888776

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=0.075  Score=57.00  Aligned_cols=153  Identities=20%  Similarity=0.179  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHH------cC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHH
Q 016280           75 IEDMLDELQEHVESIDMANDLHS------IG-GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPL  146 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~------lG-gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~L  146 (392)
                      .|.|+..|..+||+  -|.-+-.      +. .+|.++.+.+|+++.||..|..|+-...-.++..  ..... ..+..|
T Consensus       145 ~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~l  220 (885)
T KOG2023|consen  145 CEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEIL  220 (885)
T ss_pred             cchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHH
Confidence            36788889888884  3333322      22 3577888899999999999999998877655422  22222 245556


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-
Q 016280          147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL-  225 (392)
Q Consensus       147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-  225 (392)
                      ..+ .+|.+++||+....|++-+..-.+... .=.-.+.++.+.+..+..|..+...||-+...++.. +..+..+... 
T Consensus       221 Fal-anD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l  297 (885)
T KOG2023|consen  221 FAL-ANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYL  297 (885)
T ss_pred             HHH-ccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHH
Confidence            665 588899999999999999875443211 111356778888888888999999999999999964 4555544433 


Q ss_pred             -CchHHHHHh
Q 016280          226 -GFPRLMLHL  234 (392)
Q Consensus       226 -G~v~~Lv~L  234 (392)
                       .++|.|+.-
T Consensus       298 ~kliPvLl~~  307 (885)
T KOG2023|consen  298 DKLIPVLLSG  307 (885)
T ss_pred             HHHHHHHHcc
Confidence             455655543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.33  E-value=0.13  Score=56.99  Aligned_cols=165  Identities=17%  Similarity=0.161  Sum_probs=103.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHHc---C------CHHHHHHhhCCCC-C---------------
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEA---N------GLEPLLSNFASDP-D---------------  155 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaq-NNp~~Q~~vl~~---g------~l~~Ll~LL~s~~-~---------------  155 (392)
                      ..+++.++|++.+|+..|+.+||+++- |-+..--.+++.   .      .+-.|...+.... +               
T Consensus       860 ~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k  939 (1233)
T KOG1824|consen  860 DTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFK  939 (1233)
T ss_pred             HHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence            356789999999999999999999987 444332222221   0      0111112111111 1               


Q ss_pred             ------HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          156 ------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       156 ------~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                            +..|.-..-+|+-++-.+|        .--++.|...+.|+....|.-++.++.+.+.+.+...+.+.+ ..+.
T Consensus       940 ~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig 1010 (1233)
T KOG1824|consen  940 HCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIG 1010 (1233)
T ss_pred             hcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHH
Confidence                  1122222222222222221        113566777788888888999999999988877776655544 3466


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHH
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQL  275 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~  275 (392)
                      ....+++++|..||..|+.++-..+.+.|..+++.+.+-++.|.+.
T Consensus      1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence            7788899999999999999999998888866665544444444433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.23  E-value=0.077  Score=48.12  Aligned_cols=92  Identities=25%  Similarity=0.274  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc-hHHHHH
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF-PRLMLH  233 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~-v~~Lv~  233 (392)
                      ++.+|..++-+++-++.-++...+.     -++.+..+|.++++.+|..|+..|++|+..+....     .|- +..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHH
Confidence            4689999999999988877754443     47889999999999999999999999997643221     133 367778


Q ss_pred             hhcCCChHHHHHHHHHHHHHHcC
Q 016280          234 LASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       234 LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      ++.++++.++..|...+..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999888

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.18  E-value=0.06  Score=55.41  Aligned_cols=112  Identities=18%  Similarity=0.261  Sum_probs=83.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH-------------HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRS-------------QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS  168 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~-------------Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~  168 (392)
                      ..|+.+|.+  +++...|+..++.++.+.+.+             ++.++. -.+|+|++-+... +...|..-+.|||.
T Consensus       274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHHHH
Confidence            445555555  778999999999999884444             233332 2578888877663 44589999999999


Q ss_pred             hhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280          169 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  217 (392)
Q Consensus       169 lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~  217 (392)
                      ++++-|...-.=.-..-+|.|.+.|..++..++.-++..|..++.+.++
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            9998774432222345789999999999999999999999999987643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.87  Score=49.76  Aligned_cols=152  Identities=19%  Similarity=0.206  Sum_probs=87.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH-HhhCCCCCHHHHHHHH-------------HHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL-SNFASDPDVTVRTKAL-------------GAI  166 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll-~LL~s~~~~~vr~kAl-------------~AL  166 (392)
                      +|.+..+|+|.++-||..|.-+|.++-+|..    .++- + .|-|+ ..|..+.|+..+++|.             |..
T Consensus       136 ~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~p-D-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~  209 (948)
T KOG1058|consen  136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLIP-D-APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL  209 (948)
T ss_pred             HHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhcC-C-hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence            3444579999999999999999999988732    1111 1 22333 2344445556666552             444


Q ss_pred             HHhhcCC--ccc-HHHHH-------------HcChHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhh
Q 016280          167 SSLIRHN--KPG-IEAFR-------------LANGYAALRDALGSE-----------------SVKFQRKALNLIQYLLN  213 (392)
Q Consensus       167 S~lvR~~--~~~-~~~f~-------------~~gGl~~L~~lL~s~-----------------d~kl~~kA~~lLs~L~~  213 (392)
                      +|+-.-.  ... +..|+             ...-+..+..+|.+.                 ++.....|+..+-.|+.
T Consensus       210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~  289 (948)
T KOG1058|consen  210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLV  289 (948)
T ss_pred             hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHH
Confidence            4442211  111 11111             112345566666653                 45555666666666664


Q ss_pred             cCCcchH------HHHhc---------CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          214 ENASDCS------VVDKL---------GFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       214 ~~~~~~~------~l~~~---------G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..+.+..      .+.+.         |++-.++.+|.++|.+++.+++.....|++...
T Consensus       290 kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  290 KESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN  349 (948)
T ss_pred             hccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence            4333321      22222         444556677889999999999999988887665

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.04  E-value=0.21  Score=49.31  Aligned_cols=136  Identities=24%  Similarity=0.259  Sum_probs=76.4

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      -.++.++.++.+.+..+|..|++.++.+..           .-+++.|..++.. .+..+|..|++||+.+  +.+    
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d-~~~~vr~~a~~aLg~~--~~~----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD-EDPRVRDAAADALGEL--GDP----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC-CCHHHHHHHHHHHHcc--CCh----
Confidence            346666677777677777777777554432           1235566666544 4556777777755553  112    


Q ss_pred             HHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCC----------------------c---ch----HHHHhc---
Q 016280          179 AFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENA----------------------S---DC----SVVDKL---  225 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~----------------------~---~~----~~l~~~---  225 (392)
                           -.++.|+.++. +.+..+|..|+++|..+-....                      .   .+    ..+...   
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~  179 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP  179 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence                 13445566665 4666667766666666543210                      0   00    111112   


Q ss_pred             CchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          226 GFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      -.++.+..++.+.+..+|..+..+|+.+..+.
T Consensus       180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         180 EAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            24556666666777777777777777776664

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.96  E-value=0.46  Score=42.68  Aligned_cols=125  Identities=12%  Similarity=0.146  Sum_probs=93.0

Q ss_pred             HHHHHcCCHHHHHHhhCCCCC-----HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHH
Q 016280          135 QLVMEANGLEPLLSNFASDPD-----VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNL  207 (392)
Q Consensus       135 ~~vl~~g~l~~Ll~LL~s~~~-----~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~l  207 (392)
                      ..|++.||+..|++++.+...     .+....++.|+..+.-|.--..+ .+...=+.-++.....  .+..+...|+..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            348899999999999987653     36677788888888776543433 2233334445555543  368999999999


Q ss_pred             HHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280          208 IQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  260 (392)
Q Consensus       208 Ls~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~  260 (392)
                      |-+++...+.....+.+.=-++.|+..|...+.++|..|+..+-.|-...+..
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            99999866665666666666899999999999999999998888877666543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.87  E-value=0.015  Score=37.42  Aligned_cols=29  Identities=28%  Similarity=0.450  Sum_probs=25.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN  129 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN  129 (392)
                      +|.+++++++++++||..|+++||.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            67889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.79  E-value=0.53  Score=42.64  Aligned_cols=93  Identities=19%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH
Q 016280          112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD  191 (392)
Q Consensus       112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~  191 (392)
                      ++.||..+..++|-++...|..-+     ..++.+...|.. +++.||..|+..|+.++.+.--..    ....+..+..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence            578999999999999988774433     357788888765 689999999999999997643211    1223367778


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhc
Q 016280          192 ALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       192 lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      ++.++++.++.-|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999865

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.78  E-value=0.38  Score=49.01  Aligned_cols=149  Identities=18%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL  182 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~~  182 (392)
                      +..++-+++.+||..|..++..+..+....+. +.+.+.---++.-|..+ ....-|..|+--+..++.-.. +.+. +.
T Consensus        30 i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~-~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~-~~  106 (371)
T PF14664_consen   30 IQCMLLSDSKEVRAAGYRILRYLISDEESLQI-LLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE-IP  106 (371)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHH-HHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc-CC
Confidence            33344444499999999999999988766655 67766444445556654 345678888888877775532 2222 26


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .|-+..|+.+..+.+.+++.-|...|.-|+-.+|.   .+.+.|+++.|+..+.++..++.+..+.++..+..+..
T Consensus       107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence            67788899999999999999999999999876554   78899999999998887777788999999998877654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=1.2  Score=46.15  Aligned_cols=181  Identities=18%  Similarity=0.219  Sum_probs=132.3

Q ss_pred             HHHHHHHHHhhcCC-CChHHHHHcCChHHHHH-hh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-
Q 016280           76 EDMLDELQEHVESI-DMANDLHSIGGLAPLLG-YL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-  151 (392)
Q Consensus        76 ~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~-lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~-  151 (392)
                      ...|..++++++-- +.+...++.|.+.-|+. +- +.+-...+.+|..+++-+-||+...+..+-..+|+-.|++-+. 
T Consensus       200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~  279 (536)
T KOG2734|consen  200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence            44555666666622 44566667776666665 33 3466778999999999999999888887878899999988764 


Q ss_pred             ---CC---C-CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--cchHHH
Q 016280          152 ---SD---P-DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--SDCSVV  222 (392)
Q Consensus       152 ---s~---~-~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~--~~~~~l  222 (392)
                         .+   . ..+.-.+...+|+++++. +.+...|+...|+....-+++. ....+-.|..+|-+...+..  ..+..+
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kf  357 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKF  357 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHH
Confidence               23   1 235677888999999986 6789999999999988777765 45556677888888887655  457788


Q ss_pred             HhcCchHHHHHhhc----------CCChHHHHHHHHHHHHHHcCCC
Q 016280          223 DKLGFPRLMLHLAS----------SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~----------~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ++.+.++.+..+..          ..-...-|++...|+++-..+.
T Consensus       358 Ve~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~  403 (536)
T KOG2734|consen  358 VEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD  403 (536)
T ss_pred             HHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence            88887877776543          1224566889888888866553

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.18  Score=54.13  Aligned_cols=153  Identities=17%  Similarity=0.196  Sum_probs=111.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHHc---CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG  176 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~-vl~~---g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~  176 (392)
                      +|.|..+|.+++....+-|..+|..++.+.+..-+. +...   -.+|++++.+.+ +++.+|..|+.++-..+-....+
T Consensus       130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qa  208 (885)
T KOG2023|consen  130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQA  208 (885)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHH
Confidence            456667889999999999999999999887643321 2211   246889998777 58999999999999977655433


Q ss_pred             HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-h-cCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          177 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD-K-LGFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       177 ~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~-~-~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      ... ..-.=++.|..+-...++.||...|.++.+|+.-.++   .+. . .++++.++...++.|..|--.|......++
T Consensus       209 l~~-~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  209 LYV-HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            211 1122345566666778899999999999999964333   222 2 267888888888888888877888888888


Q ss_pred             cCCC
Q 016280          255 REKA  258 (392)
Q Consensus       255 ~~~~  258 (392)
                      +...
T Consensus       285 eqpi  288 (885)
T KOG2023|consen  285 EQPI  288 (885)
T ss_pred             cCcC
Confidence            8763

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=0.39  Score=50.04  Aligned_cols=167  Identities=13%  Similarity=0.113  Sum_probs=126.2

Q ss_pred             HHhhcCCCChHHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHH
Q 016280           83 QEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK  161 (392)
Q Consensus        83 ~~lve~iDnA~d~~~lGgl~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~k  161 (392)
                      .+++-+.-||.-+|.-.|+..|.. -+++.++-+    ..++.+++|+.-..|..|+++  +..|...+..+.+++.-..
T Consensus       451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~E  524 (791)
T KOG1222|consen  451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLE  524 (791)
T ss_pred             HHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHH
Confidence            567778899999999999999985 677777653    578999999988899999986  6678888787778888899


Q ss_pred             HHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC--
Q 016280          162 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--  237 (392)
Q Consensus       162 Al~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~--  237 (392)
                      +++.++++.-..-+-...+...+-+|.+...|+..  ...+.....-++.-++.+ ......+...|+|+.+++||+.  
T Consensus       525 ClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~Q  603 (791)
T KOG1222|consen  525 CLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQ  603 (791)
T ss_pred             HHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhc
Confidence            99999998765554455555678999999988863  245555566666655542 3445567788999999999984  


Q ss_pred             CChHHHHHHHHHHHHHHcC
Q 016280          238 EDPDVREAALRGLLELARE  256 (392)
Q Consensus       238 ~d~~v~E~aL~aL~~L~~~  256 (392)
                      .|..+.-..+....++..|
T Consensus       604 eDDEfV~QiiyVF~Q~l~H  622 (791)
T KOG1222|consen  604 EDDEFVVQIIYVFLQFLKH  622 (791)
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            4556666666666666665

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.68  E-value=1.2  Score=42.97  Aligned_cols=187  Identities=21%  Similarity=0.271  Sum_probs=126.6

Q ss_pred             CHHHHHHHHHHHHHhhcCC-CChHHHHH-cCChHHHHH-hhc----------CCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESI-DMANDLHS-IGGLAPLLG-YLK----------NSHANIRAKAGEVVTTIVQNNPRSQQLV  137 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~-lGgl~~Ll~-lL~----------s~~~~IR~~Aa~vLg~iaqNNp~~Q~~v  137 (392)
                      +++.+|.+|.+|.+--+.. |.|--+-. .|-...++. .+.          ++...-|..-+-+|=.|+..+|+.+..|
T Consensus        37 ~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~F  116 (293)
T KOG3036|consen   37 SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAF  116 (293)
T ss_pred             CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHH
Confidence            4456678888888877755 66765544 444444433 221          1233456555666666777789999999


Q ss_pred             HHcCC---HHHHHHhh-CCCCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          138 MEANG---LEPLLSNF-ASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       138 l~~g~---l~~Ll~LL-~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      ++...   +-+++..- .+.+.+..|..+++.|++++.+.......|+ ..+.++...+.+.+.+.--|.-|.|.+..++
T Consensus       117 L~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl  196 (293)
T KOG3036|consen  117 LRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL  196 (293)
T ss_pred             HHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            98854   33444432 2335678999999999999999877766665 5788999999999999999999999999888


Q ss_pred             hcCCcc---h---HHHHhcC-chHH-HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          213 NENASD---C---SVVDKLG-FPRL-MLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       213 ~~~~~~---~---~~l~~~G-~v~~-Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .++..-   +   ++|-.-+ ++.. +.++.+.++.-+..++++...+|+.+-
T Consensus       197 ldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  197 LDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             hccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            654332   1   2222222 2222 344556788888899999988886654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.33  Score=52.60  Aligned_cols=88  Identities=24%  Similarity=0.333  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCH
Q 016280           77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV  156 (392)
Q Consensus        77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~  156 (392)
                      -||.-|.- +-..|.|+|+.     +-++.+|+|+.+-+|..|.-++=.+.---|..   +.  ..+|.|..-|.. +|+
T Consensus       128 iAL~GLS~-fvTpdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeD-pDp  195 (877)
T KOG1059|consen  128 LALSGLSC-IVTPDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLED-PDP  195 (877)
T ss_pred             heeccccc-ccCchhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccC-CCc
Confidence            34555543 23456777763     45666777777777777777776666554533   22  246777776554 567


Q ss_pred             HHHHHHHHHHHHhhcCCccc
Q 016280          157 TVRTKALGAISSLIRHNKPG  176 (392)
Q Consensus       157 ~vr~kAl~ALS~lvR~~~~~  176 (392)
                      .|+..|+..|+-++|.+|.+
T Consensus       196 ~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  196 SVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             hHHHHHHHHHHHHHhhCCcc
Confidence            77777777777777766644

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=0.083  Score=57.32  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=116.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      +.++.++.+....+-+++...---+.+.++-.|.-+.     +++..++.=. .++++.+|..|+...+++--. .    
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~-~d~np~iR~lAlrtm~~l~v~-~----  117 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDC-EDPNPLIRALALRTMGCLRVD-K----  117 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccC-CCCCHHHHHHHhhceeeEeeh-H----
Confidence            3478889999999999999999999999999885533     5566666643 346899999999988876322 1    


Q ss_pred             HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                       + ...-+..|.++++++++-+|..|+..+..+-.   .+.+.+...|++..|-.++.+.++.|...|+.+|..|+...+
T Consensus       118 -i-~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  118 -I-TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             -H-HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence             1 22356789999999999999999999888865   445578899999999999999999999999999999998775

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.14  Score=55.01  Aligned_cols=180  Identities=17%  Similarity=0.171  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHcCC--------------hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH----HHH
Q 016280           73 QDIEDMLDELQEHVESIDMANDLHSIGG--------------LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP----RSQ  134 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDnA~d~~~lGg--------------l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp----~~Q  134 (392)
                      -+.+.+++.|.+++.+-|...--+...|              ....+.+|..++..||..|..++.-..+-.|    ..+
T Consensus       194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            5677888889999998887633333333              4455678888899999998555543333221    111


Q ss_pred             H-HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC----------------------Cccc---------------
Q 016280          135 Q-LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH----------------------NKPG---------------  176 (392)
Q Consensus       135 ~-~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~----------------------~~~~---------------  176 (392)
                      + .=+.-.++..+...+. |-+..||+.|.-+|+.+-.-                      ....               
T Consensus       274 ~e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhHHHHHHHHHHHHh-cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            1 1111134555555533 34556777666666544100                      0000               


Q ss_pred             -------------HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHH
Q 016280          177 -------------IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVR  243 (392)
Q Consensus       177 -------------~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~  243 (392)
                                   ...++..|+...+++.|..+=..||+.|+..+..|+...|.....     .+..|+..++++..+||
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VR  427 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVR  427 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHH
Confidence                         111233445566777777666899999999999999877776443     35678889999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 016280          244 EAALRGLLELAREKA  258 (392)
Q Consensus       244 E~aL~aL~~L~~~~~  258 (392)
                      .+|+.+|..|+.+-.
T Consensus       428 L~ai~aL~~Is~~l~  442 (823)
T KOG2259|consen  428 LKAIFALTMISVHLA  442 (823)
T ss_pred             HHHHHHHHHHHHHhe
Confidence            999999998887743

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=95.52  E-value=0.13  Score=53.34  Aligned_cols=150  Identities=14%  Similarity=0.100  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD  153 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~  153 (392)
                      +.++-..|+++. .-.|-.-++..| +..++.+-+ ...+++....+.+|+++-.+....-..+++.|++..++--... 
T Consensus       199 Rve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR-  275 (832)
T KOG3678|consen  199 RVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR-  275 (832)
T ss_pred             HHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeeccc-
Confidence            334434444322 235555666666 666666554 4678899999999999999755444558889999888766565 


Q ss_pred             CCHHHHHHHHHHHHHhhcCC-cccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          154 PDVTVRTKALGAISSLIRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       154 ~~~~vr~kAl~ALS~lvR~~-~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      .++.+.+.+..||+|++-|. ...+..+++...-+.|..+..+.|.-+|-.||.++.-|++. ++....+.+.|-+
T Consensus       276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~Tl  350 (832)
T KOG3678|consen  276 TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTL  350 (832)
T ss_pred             CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccch
Confidence            56889999999999976653 44567777888888999998899999999999999999864 4443344444443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.61  Score=51.11  Aligned_cols=176  Identities=18%  Similarity=0.173  Sum_probs=111.6

Q ss_pred             HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc----------C-----
Q 016280           77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----------N-----  141 (392)
Q Consensus        77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~----------g-----  141 (392)
                      .||-.|..++ +-+.|+|+     .|-+-++|++.++-||..|+-|.-.+..-.|..-+.|+..          |     
T Consensus       126 lAL~alg~i~-s~Emardl-----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~  199 (866)
T KOG1062|consen  126 LALCALGNIC-SPEMARDL-----APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAG  199 (866)
T ss_pred             HHHHHhhccC-CHHHhHHh-----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeH
Confidence            4666666533 45677776     4556678888888888888877766655555433333221          2     


Q ss_pred             --------------------CHHHHHHhhCC--------------CCCHHHHHHHHHHHHHhhcCCcccHHHHH------
Q 016280          142 --------------------GLEPLLSNFAS--------------DPDVTVRTKALGAISSLIRHNKPGIEAFR------  181 (392)
Q Consensus       142 --------------------~l~~Ll~LL~s--------------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~------  181 (392)
                                          .++-|+..|..              =+++.++.++++-|+-+-++.+.+.+.+.      
T Consensus       200 l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqv  279 (866)
T KOG1062|consen  200 LHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQV  279 (866)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence                                12333333321              04788999999988888888776655543      


Q ss_pred             -------HcChHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchH--------HHH--hcCch----HHHHHhh
Q 016280          182 -------LANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCS--------VVD--KLGFP----RLMLHLA  235 (392)
Q Consensus       182 -------~~gGl~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~--------~l~--~~G~v----~~Lv~LL  235 (392)
                             ..-|-.+|..+..+     ++..+|..|+..|..++.+...+..        .++  +..++    ..++++|
T Consensus       280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL  359 (866)
T KOG1062|consen  280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL  359 (866)
T ss_pred             HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh
Confidence                   12355555555443     4688888888888888865444422        111  11223    2478889


Q ss_pred             cCCChHHHHHHHHHHHHHHcCCC
Q 016280          236 SSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       236 ~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +++|..++..|+..+..|+....
T Consensus       360 ~DpD~SIkrralELs~~lvn~~N  382 (866)
T KOG1062|consen  360 KDPDVSIKRRALELSYALVNESN  382 (866)
T ss_pred             cCCcHHHHHHHHHHHHHHhcccc
Confidence            99999999999999988888775

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=1.5  Score=49.93  Aligned_cols=217  Identities=19%  Similarity=0.162  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHhhCC--ccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHH
Q 016280           30 EEDRRWFMEAMQSQT--VDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLG  106 (392)
Q Consensus        30 ~E~~~~L~~Al~~~~--~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~  106 (392)
                      ....+.|.+++.+..  .=..+++..+...|.++...     .+.-.+...+..|..+++-.++- -+|+- ..++-+|=
T Consensus       672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-----~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~EvIL  745 (1176)
T KOG1248|consen  672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-----SSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEVIL  745 (1176)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHH
Confidence            455677887777621  11123444444444443321     22234456677777777766611 12222 23444444


Q ss_pred             hhcCCCHHHHHHHHHHHHHHh--------hCCHHHHHHHHHcCCHHHHHHhhCCC--CCH-HHHHHHHHHHHHhhcCCcc
Q 016280          107 YLKNSHANIRAKAGEVVTTIV--------QNNPRSQQLVMEANGLEPLLSNFASD--PDV-TVRTKALGAISSLIRHNKP  175 (392)
Q Consensus       107 lL~s~~~~IR~~Aa~vLg~ia--------qNNp~~Q~~vl~~g~l~~Ll~LL~s~--~~~-~vr~kAl~ALS~lvR~~~~  175 (392)
                      +++.-+..-|..|..+|-.+.        .|+|  +..     .|...+..+...  .+. -+...-+.|+.+++.++..
T Consensus       746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~-----~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  746 SLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASA-----ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             hcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            447778889999999887777        2233  122     333344333321  122 3333338999999987766


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ....-...+-+..+..+|.+....++.-|..++.-++...|+..-.....-+++.+..+++.....++.++-..|--|++
T Consensus       819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            55555566778888889999999999999999999998777654444444577888888777788999999999999988


Q ss_pred             CCCh
Q 016280          256 EKAD  259 (392)
Q Consensus       256 ~~~~  259 (392)
                      .+..
T Consensus       899 kfg~  902 (1176)
T KOG1248|consen  899 KFGA  902 (1176)
T ss_pred             HhCH
Confidence            7763

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.37  E-value=0.13  Score=42.36  Aligned_cols=93  Identities=14%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh-cCchHHHHHhhc
Q 016280          158 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK-LGFPRLMLHLAS  236 (392)
Q Consensus       158 vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~-~G~v~~Lv~LL~  236 (392)
                      .|.-++.+|++++.+.+.....+ ..--++++..++.+.+.++|--||.+|.+++.....  +.+.. ..+...|..++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHc
Confidence            36778889998877765554333 345788899999999999999999999999864322  12222 245677777777


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 016280          237 SEDPDVREAALRGLLELA  254 (392)
Q Consensus       237 ~~d~~v~E~aL~aL~~L~  254 (392)
                      +.+..||..| ..|.++.
T Consensus        79 D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CCchhHHHHH-HHHHHHh
Confidence            8888877666 4554443

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=3.9  Score=42.41  Aligned_cols=188  Identities=17%  Similarity=0.152  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHh---------------------------
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIV---------------------------  127 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~ia---------------------------  127 (392)
                      +...++.+.-+....|.=-.|++++|++.|+.||.|.+.+|-.....++-.+.                           
T Consensus       101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            33455666666677788889999999999999999988776554444433222                           


Q ss_pred             --hC----------------------------CHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCccc
Q 016280          128 --QN----------------------------NPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPG  176 (392)
Q Consensus       128 --qN----------------------------Np~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~  176 (392)
                        ||                            .|.+-..+.+.|.+..|+.-+. ..+-...+..|.--++-+..+...+
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence              22                            1111122233333333333111 1111222333333344445555556


Q ss_pred             HHHHHHcChHHHHHHhhcC---CC---HHHHHHHHHHHHHHhh--cCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280          177 IEAFRLANGYAALRDALGS---ES---VKFQRKALNLIQYLLN--ENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR  248 (392)
Q Consensus       177 ~~~f~~~gGl~~L~~lL~s---~d---~kl~~kA~~lLs~L~~--~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~  248 (392)
                      +......+|+.++.+-+.-   .+   ..=+.--..+.-+||.  ..+.+++.|.....++...-+++. ....+-.++.
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk  339 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK  339 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence            6666778899988876642   12   2223333444444442  256778888887777655555554 4456666777


Q ss_pred             HHHHHHcCCChhhhhh
Q 016280          249 GLLELAREKADGSAIK  264 (392)
Q Consensus       249 aL~~L~~~~~~~~~~~  264 (392)
                      +|-.+..+. .++..|
T Consensus       340 vLd~am~g~-~gt~~C  354 (536)
T KOG2734|consen  340 VLDHAMFGP-EGTPNC  354 (536)
T ss_pred             HHHHHHhCC-CchHHH
Confidence            776655544 344444

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.01  E-value=0.33  Score=54.05  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=82.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      |..|..-..+.....|.-.+.|||.++-++|..        .+|.|=..+.+ .+...|.-++.|+--.+...++..+..
T Consensus       934 W~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~ 1004 (1233)
T KOG1824|consen  934 WALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPL 1004 (1233)
T ss_pred             HHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHH
Confidence            555666666677888999999999999999954        46666666555 467889988888888777777665544


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      . ..-+.-...+++.+|.+||+.|+.++...++..|+.
T Consensus      1005 l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 1005 L-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred             H-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence            3 334555567888999999999999999998776653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=94.99  E-value=0.58  Score=49.79  Aligned_cols=169  Identities=17%  Similarity=0.121  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHHcCCHHHHHHhhC
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq--NNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      .+..+++-|.-+.+..+-.-.++--..+|.+.+.|..++++||..+..+|-.++.  .||.+|.      .+|.|++.+.
T Consensus       270 tK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~  343 (569)
T KOG1242|consen  270 TKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALA  343 (569)
T ss_pred             hHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhc
Confidence            4556677776666655666666667888999999999999999999999877665  5676665      4788999876


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----SESVKFQRKALNLIQYLLNENASDCSVVDKL--  225 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~----s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--  225 (392)
                      .. ...+ .+++..|+.-.      .-.+++.-.+.+++.+|+    ..+..++++++-.+-+++..-++.+ .+...  
T Consensus       344 dp-~~~~-~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~-~lapfl~  414 (569)
T KOG1242|consen  344 DP-SCYT-PECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK-DLAPFLP  414 (569)
T ss_pred             Cc-ccch-HHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH-HHhhhHH
Confidence            53 2122 33444443311      112234445555555554    4567788999999999886532222 22211  


Q ss_pred             CchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          226 GFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      -++|.|=..+.+..+++|+-++++|+.+.++-
T Consensus       415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  415 SLLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            23344444455678999999999998876643

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.97  E-value=0.7  Score=50.15  Aligned_cols=79  Identities=18%  Similarity=0.278  Sum_probs=56.8

Q ss_pred             hHHHHHcCCh-HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---CC---------CCHHH
Q 016280           92 ANDLHSIGGL-APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SD---------PDVTV  158 (392)
Q Consensus        92 A~d~~~lGgl-~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s~---------~~~~v  158 (392)
                      .-|++..|+| .+++.+|...+-.|-..|...|-.++.+||+.+...+-. ++..|..+..   .+         +.+.+
T Consensus       179 spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL  257 (938)
T KOG1077|consen  179 SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWL  257 (938)
T ss_pred             CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHH
Confidence            5667778887 678899999999999999999999999999876633321 2333333321   11         46788


Q ss_pred             HHHHHHHHHHhhc
Q 016280          159 RTKALGAISSLIR  171 (392)
Q Consensus       159 r~kAl~ALS~lvR  171 (392)
                      .+|++..|.+.=+
T Consensus       258 ~vKl~rlLq~~p~  270 (938)
T KOG1077|consen  258 QVKLLRLLQIYPT  270 (938)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999998888733

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.14  Score=55.57  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=102.9

Q ss_pred             CChHHHHHhhcCC--C-----HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH-hhCCCCCHHHHHHHHHHHHHhh
Q 016280           99 GGLAPLLGYLKNS--H-----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS-NFASDPDVTVRTKALGAISSLI  170 (392)
Q Consensus        99 Ggl~~Ll~lL~s~--~-----~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~-LL~s~~~~~vr~kAl~ALS~lv  170 (392)
                      +.+|.|+++|...  +     =.+-..|.-||.-.+|.   +.+.++. .++ ++++ -+.+ +|-.-|..|+.|++|+.
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl-~Fiee~i~~-pdwr~reaavmAFGSIl  392 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVL-PFIEENIQN-PDWRNREAAVMAFGSIL  392 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhH-HHHHHhcCC-cchhhhhHHHHHHHhhh
Confidence            3456677877542  1     13566677777777765   3334444 223 3443 3444 57788999999999999


Q ss_pred             cCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 016280          171 RHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRG  249 (392)
Q Consensus       171 R~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~-~l~~~G~v~~Lv~LL~~~d~~v~E~aL~a  249 (392)
                      -+-.+.+..-+..++++.++.++.++..-++.-++|.+..++...++.+. ...-.+.+..++.-| .+++.+-..+..+
T Consensus       393 ~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWA  471 (859)
T KOG1241|consen  393 EGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWA  471 (859)
T ss_pred             cCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHH
Confidence            88777777777899999999999988888999999999999987664321 111123333333333 3467777888888


Q ss_pred             HHHHHcCCC
Q 016280          250 LLELAREKA  258 (392)
Q Consensus       250 L~~L~~~~~  258 (392)
                      +.+|+.+.+
T Consensus       472 f~~Laea~~  480 (859)
T KOG1241|consen  472 FISLAEAAY  480 (859)
T ss_pred             HHHHHHHHH
Confidence            888875444

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.85  E-value=0.16  Score=46.72  Aligned_cols=141  Identities=23%  Similarity=0.256  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhhC-CHHHH----HHHH------HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc
Q 016280          115 IRAKAGEVVTTIVQN-NPRSQ----QLVM------EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA  183 (392)
Q Consensus       115 IR~~Aa~vLg~iaqN-Np~~Q----~~vl------~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~  183 (392)
                      ||..|..+|..++++ .++.=    -.++      ....-+.|+.++..|+++.+|..|+.+|+.+..+..+-...--+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            799999999999998 44221    0111      112456788888888999999999999999998753221111111


Q ss_pred             C-------------------hHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH----HHHHhhcCCC
Q 016280          184 N-------------------GYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPR----LMLHLASSED  239 (392)
Q Consensus       184 g-------------------Gl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~----~Lv~LL~~~d  239 (392)
                      .                   --..|..+|+.+ +..+....+..+..|++..|..+=   +.|+++    .+-.++.+.|
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d  158 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD  158 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence            1                   122345555553 577777888888888887666532   245544    4555677899


Q ss_pred             hHHHHHHHHHHHHHHcCCC
Q 016280          240 PDVREAALRGLLELAREKA  258 (392)
Q Consensus       240 ~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+++..++.+++.+..-.+
T Consensus       159 ~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  159 PNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             CcHHHHHHHHHHHHHcCCC
Confidence            9999999999998876543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.79  E-value=1.8  Score=41.94  Aligned_cols=188  Identities=19%  Similarity=0.228  Sum_probs=117.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCC-hHHHHH-cCChHHHHH-------hhcCCC--HHHHHHHHHHH---HHHhhCCHHHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDM-ANDLHS-IGGLAPLLG-------YLKNSH--ANIRAKAGEVV---TTIVQNNPRSQQ  135 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDn-A~d~~~-lGgl~~Ll~-------lL~s~~--~~IR~~Aa~vL---g~iaqNNp~~Q~  135 (392)
                      ..++.++.||.+|...-+..++ |--+-. -|.+..|+.       .|..+.  +..-.+.|.+|   -.+|. +|+.+.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            3568899999999888877744 544443 455555543       233222  22223334443   34554 788999


Q ss_pred             HHHHcCCH---HHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccH-HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 016280          136 LVMEANGL---EPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQY  210 (392)
Q Consensus       136 ~vl~~g~l---~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~  210 (392)
                      .|++.+..   -|++..-... +-+.+|-..++.|++++....+-. ..+....-++...+.|...+.--|..|.|.+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999764   4444442221 235799999999999998765544 444567889999999999999999999999999


Q ss_pred             HhhcCCcc------hHHHHhc-CchHHHH-HhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          211 LLNENASD------CSVVDKL-GFPRLML-HLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       211 L~~~~~~~------~~~l~~~-G~v~~Lv-~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ++.++..-      .+.+... .++..++ .+...+++-+-.++.++-..|+.+..
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            98753321      1222222 2233333 34557778888999998888887764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.79  E-value=0.28  Score=40.35  Aligned_cols=93  Identities=19%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC
Q 016280          116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS  195 (392)
Q Consensus       116 R~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s  195 (392)
                      |..+.+.|+.++...+..-...++ -.+++++..+. |++..||..|..||-++++......-. .-..-+..|.+++..
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence            556677777776554433222333 36888998865 478999999999999999876533222 235678899999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 016280          196 ESVKFQRKALNLIQYLL  212 (392)
Q Consensus       196 ~d~kl~~kA~~lLs~L~  212 (392)
                      .++.||.-| .+|-.|+
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999998865 5555554

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.72  E-value=0.23  Score=53.02  Aligned_cols=213  Identities=18%  Similarity=0.221  Sum_probs=116.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH---HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS---QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~---Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      |.+|.|...|++.+..|.......+|+++.|.|+.   ++...   .---|+.+|.+ .+.++|+.|.-.++|+.|---|
T Consensus       688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGP  763 (975)
T COG5181         688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKS-WNKEIRRNATETFGCISRAIGP  763 (975)
T ss_pred             hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCH
Confidence            56788999999999999999999999999999852   22211   11236666666 4789999999998888763211


Q ss_pred             c------------------------HHHHHH-cChHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcC
Q 016280          176 G------------------------IEAFRL-ANGYAALRDALG---SESVKFQRKALNLIQYLLNEN-ASDCSVVDKLG  226 (392)
Q Consensus       176 ~------------------------~~~f~~-~gGl~~L~~lL~---s~d~kl~~kA~~lLs~L~~~~-~~~~~~l~~~G  226 (392)
                      .                        ...+.+ +|-+.+|-.+|.   .+...+|.-.+.+++++...- ...++.+  .-
T Consensus       764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~  841 (975)
T COG5181         764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YS  841 (975)
T ss_pred             HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HH
Confidence            0                        000111 222333333332   234444444444444433210 0001111  01


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCh-------hhHHHHHHHH-
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSP-------EDLGAAREER-  298 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~-------ed~~~~~ee~-  298 (392)
                      +.|.|-.-|.+.|+..|..|.+.+..|+-+++.- ..  .+.--+|.++|   .-.|-.-++       |-++.+..-+ 
T Consensus       842 itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~--eda~IHLlNll---wpNIle~sPhvi~~~~Eg~e~~~~~lg  915 (975)
T COG5181         842 ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GD--EDAAIHLLNLL---WPNILEPSPHVIQSFDEGMESFATVLG  915 (975)
T ss_pred             hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-cc--HHHHHHHHHHh---hhhccCCCcHHHHHHHHHHHHHHHHhc
Confidence            2233344455778888899999999999887631 11  11122222222   111111011       1222222222 


Q ss_pred             --HHHHHHHHHHhCCCccccccceeec
Q 016280          299 --HLVDSLWNACYNEPSSLRDKGLLVL  323 (392)
Q Consensus       299 --~~~~~L~~~~f~~~~~~~~~~~~~~  323 (392)
                        -+...+|.-+|.-.+.+|+-=|.|.
T Consensus       916 ~g~~m~Yv~qGLFHPs~~VRk~ywtvy  942 (975)
T COG5181         916 SGAMMKYVQQGLFHPSSTVRKRYWTVY  942 (975)
T ss_pred             cHHHHHHHHHhccCchHHHHHHHHHHH
Confidence              3467788888988888888766554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=10  Score=43.53  Aligned_cols=184  Identities=14%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHc---CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSI---GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEP  145 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~l---Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~  145 (392)
                      .+......+.+.|.+++.. +...-+..-   -....|..-.++.....|..++.+|..+.+-.+ ..-..+.+  .|+-
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~E  742 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPE  742 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHH
Confidence            3455566788888888876 323222221   123444555667788899999999999998655 22222222  2444


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHhhc-------CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          146 LLSNFASDPDVTVRTKALGAISSLIR-------HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       146 Ll~LL~s~~~~~vr~kAl~ALS~lvR-------~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      +|-.+ ++.+...|..|.-+|=+|++       ++.+. .. ....-+..|...+-.+...+......++++++.+....
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~-~~-~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPA-SA-ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccch-HH-HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            44443 55677888888777777764       11220 00 01112333333333444444444467888888765554


Q ss_pred             hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       219 ~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      ...-.=.+++..+..+|.+...+++..|+..+.-++...|.
T Consensus       820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe  860 (1176)
T KOG1248|consen  820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE  860 (1176)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence            44333446677777788899999999999999999998884

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=94.66  E-value=0.071  Score=46.93  Aligned_cols=74  Identities=18%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      ++..|.+-|.+.++.++..|..+|-.|++|. +.++..|...+.+..|+.++....+..|+.+++..|-+-...+
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            4566777888999999999999999999995 6788888888999999999887678899999998887766554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.61  E-value=1.3  Score=44.21  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=117.5

Q ss_pred             hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHHc-C----CHHHHHHhhCCCCC---------H
Q 016280           92 ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEA-N----GLEPLLSNFASDPD---------V  156 (392)
Q Consensus        92 A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq-NNp~~Q~~vl~~-g----~l~~Ll~LL~s~~~---------~  156 (392)
                      ++.|.+-. +..+.+.|++....+...+..++..++. +.......|+.. +    +++.|+..=..+..         .
T Consensus        50 ~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~  128 (330)
T PF11707_consen   50 IRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP  128 (330)
T ss_pred             HHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence            44444443 7888899999999999999999999999 887777777765 2    34444433111111         1


Q ss_pred             HHHHHHH-HHHHHhhcCCcccHHHHHHcC-hHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCC---cchHHHHhcCchHH
Q 016280          157 TVRTKAL-GAISSLIRHNKPGIEAFRLAN-GYAALRDALGSESVKFQRKALNLIQ-YLLNENA---SDCSVVDKLGFPRL  230 (392)
Q Consensus       157 ~vr~kAl-~ALS~lvR~~~~~~~~f~~~g-Gl~~L~~lL~s~d~kl~~kA~~lLs-~L~~~~~---~~~~~l~~~G~v~~  230 (392)
                      .+|...+ ++||-+..+++.....++..+ -+..+.+-|..++..+-...+..+. +++.+..   ..+-.+.....+.+
T Consensus       129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~  208 (330)
T PF11707_consen  129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ  208 (330)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence            7787776 555555555555666776654 4666777788888888888887777 4655432   22445666678899


Q ss_pred             HHHhhcCCCh----HHHHHHHHHHHHHHcCCChh
Q 016280          231 MLHLASSEDP----DVREAALRGLLELAREKADG  260 (392)
Q Consensus       231 Lv~LL~~~d~----~v~E~aL~aL~~L~~~~~~~  260 (392)
                      |+.+...++.    .+.+.+-..|..++++...+
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~G  242 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPKHG  242 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcCCCcc
Confidence            9998887777    89999999999999866543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=3  Score=41.91  Aligned_cols=266  Identities=17%  Similarity=0.148  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHhhcCCC-Ch----HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHH--HH
Q 016280           75 IEDMLDELQEHVESID-MA----NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP--LL  147 (392)
Q Consensus        75 ~~~aL~~L~~lve~iD-nA----~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~--Ll  147 (392)
                      +.-++..+--++|+-| |+    ...++.|.++.++.++-.++.+|-..|...|..++-- |..-+.+++...+.+  +.
T Consensus        99 KiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlr  177 (524)
T KOG4413|consen   99 KILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLR  177 (524)
T ss_pred             hhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHh
Confidence            4456677777788877 33    2344678888889999999999999999999999853 556677777766543  34


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLG  226 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G  226 (392)
                      .+-.. .+.-+|...+.-|--+..-.+......-..|-+..|..=|+. +|.-++..+.-+...|... ...++.+.+.|
T Consensus       178 nlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeg  255 (524)
T KOG4413|consen  178 NLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEG  255 (524)
T ss_pred             HHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhh
Confidence            44333 344566666555544444445555566677778887777776 6778888888888888753 45677888999


Q ss_pred             chHHHHHhhcCCChHHHH--HHHHHHHHHHcCCC-hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH----
Q 016280          227 FPRLMLHLASSEDPDVRE--AALRGLLELAREKA-DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERH----  299 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E--~aL~aL~~L~~~~~-~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~----  299 (392)
                      +|..+.+++...+.+--+  .++-..+.+-.... -.+..  ...-..+...++..++.|+.-+.+-+++..+.+.    
T Consensus       256 lIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvse--eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS  333 (524)
T KOG4413|consen  256 LIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSE--EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS  333 (524)
T ss_pred             HHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCH--HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence            999999998855443222  23333222221111 00000  1112445556666666666545555555554442    


Q ss_pred             --------------HHHHHHHHHhCCCcccccc----ceeeccCCCCCCcccc--ccccCCchhhh
Q 016280          300 --------------LVDSLWNACYNEPSSLRDK----GLLVLPGEDAPPPDVA--SKHFEPPLRAW  345 (392)
Q Consensus       300 --------------~~~~L~~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~  345 (392)
                                    ..++|+-..|....+-+.+    ++-.|+|+--|||.-.  ||--+...-.|
T Consensus       334 nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  334 NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence                          2356677777777766666    6778899998888643  44444433334

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.48  E-value=0.24  Score=51.59  Aligned_cols=152  Identities=20%  Similarity=0.211  Sum_probs=89.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhh----CCHH---HHHHHHHcCCHHHHHHhhC--CCCCHHHHHHHHHHHHHhhc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQ----NNPR---SQQLVMEANGLEPLLSNFA--SDPDVTVRTKALGAISSLIR  171 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaq----NNp~---~Q~~vl~~g~l~~Ll~LL~--s~~~~~vr~kAl~ALS~lvR  171 (392)
                      ...++..|.+..-..|..|+|.+|+|..    |-|.   .++.+... .+..+++.-.  ......|+.+|+.||+++..
T Consensus       435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ  513 (728)
T KOG4535|consen  435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ  513 (728)
T ss_pred             HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence            3445555666667889999999999763    4443   34443322 3444554422  22245799999999999864


Q ss_pred             CCc----ccHHHHHHcChHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC----chHHHHHhhc-CCChH
Q 016280          172 HNK----PGIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLG----FPRLMLHLAS-SEDPD  241 (392)
Q Consensus       172 ~~~----~~~~~f~~~gGl~~L~~l-L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G----~v~~Lv~LL~-~~d~~  241 (392)
                      --.    .+.... ..+.+..+... +-....+||=.||+++++|..+..-   .+.++.    +.+.|..|+. ..+..
T Consensus       514 vlq~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~---~lq~~~wA~~~F~~L~~Lv~~~~NFK  589 (728)
T KOG4535|consen  514 FLQPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL---PLQTAPWASQAFNALTSLVTSCKNFK  589 (728)
T ss_pred             HHHHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhhcCccc---cccCCCchHHHHHHHHHHHHHhccce
Confidence            211    111111 12222222222 2234689999999999999975322   123333    3455556554 57889


Q ss_pred             HHHHHHHHHHHHHcCC
Q 016280          242 VREAALRGLLELAREK  257 (392)
Q Consensus       242 v~E~aL~aL~~L~~~~  257 (392)
                      +|..|+.+|..-.+-.
T Consensus       590 VRi~AA~aL~vp~~re  605 (728)
T KOG4535|consen  590 VRIRAAAALSVPGKRE  605 (728)
T ss_pred             EeehhhhhhcCCCCcc
Confidence            9999999997655433

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.39  E-value=0.4  Score=43.11  Aligned_cols=110  Identities=23%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCC--------CCCHHHHHHHHHHHHHhh
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFAS--------DPDVTVRTKALGAISSLI  170 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s--------~~~~~vr~kAl~ALS~lv  170 (392)
                      ....++..|.+.....  ....-|...-.+++ .--+.|++.||+..|+.+|..        ..+......++.+|-+++
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3455667676544332  22222222223333 333448889999999887752        245678888999999988


Q ss_pred             cCCcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          171 RHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       171 R~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      . +..+...++. .+++..|+.+|.+++.+++.-|+.+|+.+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            4 4566666665 689999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.37  E-value=0.58  Score=42.07  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC--CHHHHHHhhCCCCCHHHHHHHHHHHHHhh---cCCcc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISSLI---RHNKP  175 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g--~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv---R~~~~  175 (392)
                      +..+..+|++.++.-||.++.+++..+++++.  +.+.+++  .+..|+.+|.+..+..++..++.+++.+.   ++++.
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34567899999999999999999999998742  3343443  57889999988777888888888888764   56666


Q ss_pred             cHHHHHHcCh---HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          176 GIEAFRLANG---YAALRDALGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       176 ~~~~f~~~gG---l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      -...+.....   ++.++.+++.  ......++.+|+.|...++..
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt  148 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT  148 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence            5555544332   2223333332  566677788888887665554

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=94.33  E-value=0.59  Score=48.76  Aligned_cols=125  Identities=16%  Similarity=0.166  Sum_probs=86.1

Q ss_pred             HHHHHHHcCCHHHHHHhh---------CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-----C-
Q 016280          133 SQQLVMEANGLEPLLSNF---------ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-----S-  197 (392)
Q Consensus       133 ~Q~~vl~~g~l~~Ll~LL---------~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-----d-  197 (392)
                      ..+.++...++..|+++-         ....+..+...|+-+|+|++-+++.+++.|.+.|+...++..|+..     + 
T Consensus        14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~   93 (446)
T PF10165_consen   14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS   93 (446)
T ss_pred             cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence            334445455566666654         3446789999999999999999999999999999999999998764     3 


Q ss_pred             --HHHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHHHHhhc----------C-------CChHHHHHHHHHHHHHHcCC
Q 016280          198 --VKFQRKALNLIQYLLNENASDC-SVVDKLGFPRLMLHLAS----------S-------EDPDVREAALRGLLELAREK  257 (392)
Q Consensus       198 --~kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~Lv~LL~----------~-------~d~~v~E~aL~aL~~L~~~~  257 (392)
                        .-+-.|-+|++.++.   +..+ +.+.+.+++..++..|.          .       .+.....-+|.++.|+..+.
T Consensus        94 d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~  170 (446)
T PF10165_consen   94 DVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY  170 (446)
T ss_pred             hHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence              334455555555554   3344 44445577777666542          0       13345577789999998877


Q ss_pred             Chh
Q 016280          258 ADG  260 (392)
Q Consensus       258 ~~~  260 (392)
                      +..
T Consensus       171 ~~~  173 (446)
T PF10165_consen  171 PKS  173 (446)
T ss_pred             Ccc
Confidence            754

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.24  E-value=1.4  Score=48.58  Aligned_cols=126  Identities=16%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280           75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP  154 (392)
Q Consensus        75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~  154 (392)
                      +.+.+.-.-..+-..+....+.   .+..+.+=|.++++.||..|...++.+=  .+   + +++ ..++++.+++.. +
T Consensus        71 lKrL~ylYl~~yak~~P~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~--~~---e-l~~-~~~~~ik~~l~d-~  139 (757)
T COG5096          71 LKRLLYLYLERYAKLKPELALL---AVNTIQKDLQDPNEEIRGFALRTLSLLR--VK---E-LLG-NIIDPIKKLLTD-P  139 (757)
T ss_pred             HHHHHHHHHHHHhccCHHHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcC--hH---H-HHH-HHHHHHHHHccC-C
Confidence            3445444444444334433222   2455667778899999999988888763  22   2 222 357777787665 6


Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      ++.||++|+.||..+-|-.   ...+.+.|-+..+..++.+.++.+...|...+..+..+
T Consensus       140 ~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         140 HAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            7899999999999987643   34565677777888888888899999888888777543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.14  E-value=0.48  Score=51.36  Aligned_cols=129  Identities=22%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH-H
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL-S  148 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll-~  148 (392)
                      .-++.+..-+-.+-+..++.|.-+||+. |-+..+++...+.+..||.+.|.+|+.+..++...-+.+.+ +....|+ +
T Consensus        57 si~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~R  134 (892)
T KOG2025|consen   57 SIPDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIR  134 (892)
T ss_pred             CcHHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHH
Confidence            4566677777777777888899999764 55677778888899999999999999999887766665544 3444444 4


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHH
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNL  207 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~l  207 (392)
                      +++.  .+.||..|+.|||-+=. .+ .-..   ......+..+++. ++..||+-|+..
T Consensus       135 l~Dr--ep~VRiqAv~aLsrlQ~-d~-~dee---~~v~n~l~~liqnDpS~EVRRaaLsn  187 (892)
T KOG2025|consen  135 LKDR--EPNVRIQAVLALSRLQG-DP-KDEE---CPVVNLLKDLIQNDPSDEVRRAALSN  187 (892)
T ss_pred             Hhcc--CchHHHHHHHHHHHHhc-CC-CCCc---ccHHHHHHHHHhcCCcHHHHHHHHHh
Confidence            4444  56899999999998752 22 1122   2344455555554 567888766543

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.09  E-value=6.9  Score=38.94  Aligned_cols=139  Identities=18%  Similarity=0.235  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhhcCCcccHHHHHHcCh----HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---hHHHHhcCchH
Q 016280          157 TVRTKALGAISSLIRHNKPGIEAFRLANG----YAALRDALGSESVKFQRKALNLIQYLLNENASD---CSVVDKLGFPR  229 (392)
Q Consensus       157 ~vr~kAl~ALS~lvR~~~~~~~~f~~~gG----l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~---~~~l~~~G~v~  229 (392)
                      .+..-|......+++.+......|...+-    .++-..++.+.+.-.++.+..++.+++.+.+..   ...+-+..-++
T Consensus       181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLK  260 (342)
T KOG1566|consen  181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLK  260 (342)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHH
Confidence            45556666666777777777777776654    445777889999999999999999998654332   23444556788


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCC--ChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREK--ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL  300 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~--~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~  300 (392)
                      .++.||+.+..++|-.|-....-.+.+-  ++.+..|+..-..+|.+.+..-.....    +| +.+-+|+.+
T Consensus       261 lmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~----~D-eqF~dEk~~  328 (342)
T KOG1566|consen  261 LMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRT----ED-EQFLDEKAY  328 (342)
T ss_pred             HHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCC----ch-hhhhhhHHH
Confidence            9999999999999988888777666543  356777766667777776665433332    23 445566655

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.90  E-value=0.093  Score=33.65  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=26.5

Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      ++|.+++++.++++.||..|+.+|..|+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.88  E-value=1.8  Score=47.40  Aligned_cols=130  Identities=18%  Similarity=0.222  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChH------------------HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLA------------------PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ  135 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~------------------~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~  135 (392)
                      +.++|++=|...++++.+-++...+-.++                  .++.+|.++++.++-.|+..|-++. |+|..-.
T Consensus       200 D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk  278 (948)
T KOG1058|consen  200 DPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALK  278 (948)
T ss_pred             CHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHH
Confidence            34677777777777777655554433222                  2333444444445544444444443 3332211


Q ss_pred             HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      .     +-..+++++...+|..++.-.+.-|+.+-..+...     -.|-+--+.++|.++|..++.|+..+.-.|+..
T Consensus       279 ~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i-----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  279 A-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI-----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             H-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH-----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            1     22345555544444445555555555544222211     122233356788999999999999999999865

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.79  E-value=1.5  Score=44.93  Aligned_cols=104  Identities=22%  Similarity=0.314  Sum_probs=83.4

Q ss_pred             HHHHHcCChHHHH-HhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-CC--CCHHHHHHHHHH
Q 016280           93 NDLHSIGGLAPLL-GYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SD--PDVTVRTKALGA  165 (392)
Q Consensus        93 ~d~~~lGgl~~Ll-~lL~s~---~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~--~~~~vr~kAl~A  165 (392)
                      +++.+-+.++..+ ..+++.   -+.|=..|+.++.++..|.|.+-..+.+.|.++.++..+. .+  ++.++....-.+
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            3444434444444 455654   4789999999999999999999998999999999998877 43  567888888899


Q ss_pred             HHHhhcCCcccHHHHHHcChHHHHHHhhcCCC
Q 016280          166 ISSLIRHNKPGIEAFRLANGYAALRDALGSES  197 (392)
Q Consensus       166 LS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d  197 (392)
                      |+++|-|. .+.+.|...+.+..+.+++.+++
T Consensus       179 l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  179 LSAICLNN-RGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HhHHhcCH-HHHHHHHhcChHHHHHHHhCCHH
Confidence            99999864 68999999999999999998864

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=93.78  E-value=6.8  Score=40.32  Aligned_cols=128  Identities=17%  Similarity=0.200  Sum_probs=89.7

Q ss_pred             HHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc--------cHHHHHH----cChHHHHHH
Q 016280          124 TTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--------GIEAFRL----ANGYAALRD  191 (392)
Q Consensus       124 g~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~--------~~~~f~~----~gGl~~L~~  191 (392)
                      |-+..++|...+      .+..|+.+|.+   +.+...|.-++.-++...+.        ..+.++.    .--++.|++
T Consensus       260 aLv~R~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~  330 (415)
T PF12460_consen  260 ALVMRGHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLE  330 (415)
T ss_pred             HHHHcCCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHH
Confidence            445566665544      35668888765   56778888888887766221        1111112    235666777


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhh
Q 016280          192 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVREAALRGLLELAREKADGSA  262 (392)
Q Consensus       192 lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~  262 (392)
                      ..+..+...|..-..+|++++.+-|..  .+...  .++|.|++-|..++.+++..++.+|..+.++.++...
T Consensus       331 ~~~~~~~~~k~~yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~  401 (415)
T PF12460_consen  331 GFKEADDEIKSNYLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS  401 (415)
T ss_pred             HHhhcChhhHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence            776666668888899999999876643  33322  5789999999999999999999999999999976554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.78  E-value=0.38  Score=45.98  Aligned_cols=53  Identities=13%  Similarity=0.213  Sum_probs=41.3

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHH-HHHHHHcCCHHHHHHhhCCC
Q 016280          101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEPLLSNFASD  153 (392)
Q Consensus       101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~-Q~~vl~~g~l~~Ll~LL~s~  153 (392)
                      +..|+++|. ..+...|+-|.-+|.++++....+ +....+.+.|..||..+...
T Consensus       174 ~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a  228 (257)
T PF12031_consen  174 FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence            346677775 478899999999999999976644 45555779999999987653

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.77  E-value=0.69  Score=45.38  Aligned_cols=113  Identities=20%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             CChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280           99 GGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus        99 Ggl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      +.+..|+ ..+.+.++.||+.|..|+|-++--+.+.-..     .++.++..+..+ +..++..|+.+|.-++.-|....
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            4465665 7889999999999999999999876643222     366677777654 88999999999998877654321


Q ss_pred             -HHH-------HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280          178 -EAF-------RLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  217 (392)
Q Consensus       178 -~~f-------~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~  217 (392)
                       ...       ....-+.++.+.+.+.+..++..|+-.++.|.-.+.-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i  147 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI  147 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence             111       1123466788888888999999999999998865443

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.76  E-value=0.47  Score=51.07  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=75.0

Q ss_pred             HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 016280          137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA  216 (392)
Q Consensus       137 vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~  216 (392)
                      ++..|+-..++.=|.. .=-+||+.|++++..++.+.|.    | ....+..|+..+..+...||.+|.++|..++.+  
T Consensus       369 iI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~----F-A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--  440 (823)
T KOG2259|consen  369 IIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPG----F-AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--  440 (823)
T ss_pred             cccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCC----c-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--
Confidence            4444555555554332 2347999999999999987763    2 233788999999999999999999999999865  


Q ss_pred             cchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280          217 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  252 (392)
Q Consensus       217 ~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~  252 (392)
                          ..++...++.+...|.+...++|+.....|.+
T Consensus       441 ----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  441 ----LAIREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             ----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence                23344456677777777777888776666654

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.73  E-value=2.7  Score=48.05  Aligned_cols=146  Identities=18%  Similarity=0.228  Sum_probs=112.6

Q ss_pred             cCChHHHH-Hhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC
Q 016280           98 IGGLAPLL-GYLK----NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH  172 (392)
Q Consensus        98 lGgl~~Ll-~lL~----s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~  172 (392)
                      +|-+.|++ ...+    .+++++|..|.-++|.+.--..   + |.+ -.+|.|+..+...+++.+|.+++-|++-++--
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~-fce-s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---E-FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---H-HHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            56676666 4553    3589999999999999874322   1 222 24888999999888999999999999988776


Q ss_pred             CcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280          173 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  252 (392)
Q Consensus       173 ~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~  252 (392)
                      +|.-.+.+     -+.|.+-|+..+..+|+.|.-.|++|...+     .+.--|.+.-+..+|.+++..+++-|=...-.
T Consensus       992 fpnlie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen  992 FPNLIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred             cccccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            76555444     234677788899999999999999999753     44455999999999999999999999877777


Q ss_pred             HHcCCC
Q 016280          253 LAREKA  258 (392)
Q Consensus       253 L~~~~~  258 (392)
                      |+..+.
T Consensus      1062 ls~k~n 1067 (1251)
T KOG0414|consen 1062 LSSKGN 1067 (1251)
T ss_pred             hhhccc
Confidence            766654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.73  E-value=3.3  Score=41.62  Aligned_cols=182  Identities=14%  Similarity=0.208  Sum_probs=123.7

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC---hHHH
Q 016280          112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN---GYAA  188 (392)
Q Consensus       112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g---Gl~~  188 (392)
                      ++++--.+-.+|..|+...+ +-+.++....+-.+.+.+.. ++-++..-|...+..+...|+.....|+..+   =+..
T Consensus       136 ~~dial~~g~mlRec~k~e~-l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~  213 (335)
T PF08569_consen  136 NPDIALNCGDMLRECIKHES-LAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK  213 (335)
T ss_dssp             STTTHHHHHHHHHHHTTSHH-HHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred             CccccchHHHHHHHHHhhHH-HHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            55666778888888988744 55568888888888887665 5789999999999998877777777777654   3456


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH----HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhh
Q 016280          189 LRDALGSESVKFQRKALNLIQYLLNENASDCSV----VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSA  262 (392)
Q Consensus       189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~----l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~  262 (392)
                      ...+|.|++--.|+.++-+|+.|+.+ +.+...    +.+..-+..++.||++....+|-.|..+.--.+.+..  +.+.
T Consensus       214 ~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~  292 (335)
T PF08569_consen  214 YNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV  292 (335)
T ss_dssp             HHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred             HHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence            78889999999999999999999964 555443    3344678899999999999999999988877766543  2222


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 016280          263 IKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV  301 (392)
Q Consensus       263 ~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~  301 (392)
                      ..    +..=|+.|-.-+..... +..|-+.+.+|++++
T Consensus       293 ~i----L~~Nr~kLl~fl~~f~~-~~~~D~qf~~EK~~l  326 (335)
T PF08569_consen  293 DI----LIKNREKLLRFLKDFHT-DRTDDEQFEDEKAYL  326 (335)
T ss_dssp             HH----HHHTHHHHHHHHHTTTT-T--S-CHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHhCCC-CCCccccHHHHHHHH
Confidence            11    11112222223333221 231336788888774

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=93.69  E-value=2.5  Score=47.19  Aligned_cols=156  Identities=18%  Similarity=0.167  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHhhC-CccH--HHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHH
Q 016280           28 LSEEDRRWFMEAMQSQ-TVDV--IKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPL  104 (392)
Q Consensus        28 ~s~E~~~~L~~Al~~~-~~D~--~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~L  104 (392)
                      -|.|-.-.|+||+..+ +.|.  ...|++.+.=+  .....-....+|--...+.+.+.++++..+|...++..- +|.+
T Consensus       542 ~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~--~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~-iPsl  618 (1005)
T KOG2274|consen  542 SSDEVLVLLMEALSSVVKLDPEFAASMESKICPL--TINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERL-IPSL  618 (1005)
T ss_pred             ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHH--HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHH-HHHH
Confidence            3566777777777775 3443  22344322100  001111122355555667788888888777777766543 8999


Q ss_pred             HHhhcCCC----HHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          105 LGYLKNSH----ANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       105 l~lL~s~~----~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      +..|..+.    +.+...|+.+|.++..|-|. .-+.++ +-++|++.++.-...|..+-..+--|+++++....+....
T Consensus       619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t  697 (1005)
T KOG2274|consen  619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLT  697 (1005)
T ss_pred             HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHh
Confidence            99998776    88999999999999998542 222233 3479999998776667788899999999999765544444


Q ss_pred             HHHcChHH
Q 016280          180 FRLANGYA  187 (392)
Q Consensus       180 f~~~gGl~  187 (392)
                      ....+|..
T Consensus       698 ~~~e~g~~  705 (1005)
T KOG2274|consen  698 WHDEPGHN  705 (1005)
T ss_pred             hccCCCcc
Confidence            44455544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.57  E-value=1.6  Score=47.54  Aligned_cols=143  Identities=10%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      .+|.|..-|..+++.|+..|..+|..+|.-||+.   ++.  .-|.+..++.+..+..+..|.+--.++++---|...+ 
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn---yL~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-  255 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN---YLQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-  255 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc---ccc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-
Confidence            4666777788899999999999999999999954   332  3466778877767788999999999998865554333 


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHH---------hhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNLIQYL---------LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL  250 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L---------~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL  250 (392)
                          .-++.|..++.++.      |..+|+-.         ..+.+.+. ..++ =.+..|-.++.+.|++++--.|-++
T Consensus       256 ----KLieplt~li~sT~------AmSLlYECvNTVVa~s~s~g~~d~~-asiq-LCvqKLr~fiedsDqNLKYlgLlam  323 (877)
T KOG1059|consen  256 ----KLIEPITELMESTV------AMSLLYECVNTVVAVSMSSGMSDHS-ASIQ-LCVQKLRIFIEDSDQNLKYLGLLAM  323 (877)
T ss_pred             ----hhhhHHHHHHHhhH------HHHHHHHHHHHheeehhccCCCCcH-HHHH-HHHHHHhhhhhcCCccHHHHHHHHH
Confidence                34667777777642      33333222         21111111 1111 0133444455566666776666666


Q ss_pred             HHHHcCCChh
Q 016280          251 LELAREKADG  260 (392)
Q Consensus       251 ~~L~~~~~~~  260 (392)
                      ..|....++.
T Consensus       324 ~KI~ktHp~~  333 (877)
T KOG1059|consen  324 SKILKTHPKA  333 (877)
T ss_pred             HHHhhhCHHH
Confidence            6666666543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.47  E-value=0.33  Score=43.30  Aligned_cols=146  Identities=17%  Similarity=0.214  Sum_probs=97.6

Q ss_pred             ChHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280          100 GLAPLLGYLK--NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       100 gl~~Ll~lL~--s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      .+..++..|.  ...+++|..|.-+++.+-   +..++.+.+.  +...+..+..+.+..-...++.+++.+--..+...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            3556676654  467889999999999884   4444444332  44444433222223367889999999987766554


Q ss_pred             HHH-HHcChHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChH-HHHHHHHHHHH
Q 016280          178 EAF-RLANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPD-VREAALRGLLE  252 (392)
Q Consensus       178 ~~f-~~~gGl~~L~~lL~--s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~-v~E~aL~aL~~  252 (392)
                      ..+ ...|-.+.+...+.  +++..++..++.+|+.=|..  ..+..++...+++.|-.+++ +++.. ++..|+-.|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            444 45667778888888  78999999999999988753  44444555556888888885 45555 77777766653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=93.43  E-value=0.84  Score=51.66  Aligned_cols=141  Identities=16%  Similarity=0.131  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHH----cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHH
Q 016280          115 IRAKAGEVVTTIVQNNPRSQQLVME----ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR  190 (392)
Q Consensus       115 IR~~Aa~vLg~iaqNNp~~Q~~vl~----~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~  190 (392)
                      =-..+..+|.|+..-||.....|-.    .|.++-++..+....+..++.-|+..|+-+. .+.+....+...|.+..|.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHH
Confidence            3456889999999999965443322    2677778888887778889999998887765 4567788888899999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280          191 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       191 ~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+|+|- +..|..++..|+.|++. +.......+.|.+..+..++. +.+.+.|..++..|..++.+.-
T Consensus      1820 ~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence            999874 67788999999999865 444445566676666666554 6788999999999999988664

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.34  E-value=1.7  Score=46.16  Aligned_cols=159  Identities=14%  Similarity=0.158  Sum_probs=108.1

Q ss_pred             HHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHH
Q 016280           50 RMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTT  125 (392)
Q Consensus        50 ~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~----~~IR~~Aa~vLg~  125 (392)
                      --+.+++++..+.         ...+..++-.|..+.-+.-.|.+|+++.|+..|..++.+..    .++......+...
T Consensus        84 ~a~~i~e~l~~~~---------~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~e  154 (713)
T KOG2999|consen   84 YAKRIMEILTEGN---------NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSE  154 (713)
T ss_pred             HHHHHHHHHhCCC---------cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence            3455666654432         23344488889998888889999999999999999998754    3455555555544


Q ss_pred             HhhCCHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHH
Q 016280          126 IVQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKA  204 (392)
Q Consensus       126 iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA  204 (392)
                      +....-..-+ .+...++.....+.. +-.+..+-..|+.-+-+++-+.......+...--+.-|++.++..+.+++..|
T Consensus       155 lmehgvvsW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~a  233 (713)
T KOG2999|consen  155 LMEHGVVSWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCA  233 (713)
T ss_pred             HHhhceeeee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHH
Confidence            4433221111 111122333333321 11244677788888888888877667777778889999999999999999999


Q ss_pred             HHHHHHHhhcCCcc
Q 016280          205 LNLIQYLLNENASD  218 (392)
Q Consensus       205 ~~lLs~L~~~~~~~  218 (392)
                      ..++..|....+++
T Consensus       234 ial~nal~~~a~~~  247 (713)
T KOG2999|consen  234 IALLNALFRKAPDD  247 (713)
T ss_pred             HHHHHHHHhhCChH
Confidence            99999998776665

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.32  E-value=2.2  Score=49.95  Aligned_cols=134  Identities=18%  Similarity=0.190  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc
Q 016280          115 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG  194 (392)
Q Consensus       115 IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~  194 (392)
                      -...|.|+.-.++++.|..|..   .+.+..++..|.+ +...+|.||+-|||.++.-.+.-.   .....-..+-+=+.
T Consensus       793 d~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~  865 (1692)
T KOG1020|consen  793 DDDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLN  865 (1692)
T ss_pred             cchhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhc
Confidence            4567888888899998877652   2457777777775 678999999999999986544211   11112222333344


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280          195 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  260 (392)
Q Consensus       195 s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~  260 (392)
                      .....||..|+-++...+...++....     +-..+.+=+.++...||.+|++.|..++...|.+
T Consensus       866 DssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  866 DSSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDF  926 (1692)
T ss_pred             cchhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence            566899999999999777655554322     2345566667788999999999999999999866

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.15  E-value=0.31  Score=42.99  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..|.+=|.+.++.++.+|..+|-+|++|.. .++..|.....+..|+.++....+..|+.+++..|-.-...++
T Consensus        39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            5666777889999999999999999999976 6777788888999999998775788999999998888766554

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=92.98  E-value=2.1  Score=42.60  Aligned_cols=159  Identities=21%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             HHHHHHhhCCCC---CHHHHHHHHHHHHHhhcCCcccHHHHHH---------c---ChHHHHHHhhc-----CCCHHHHH
Q 016280          143 LEPLLSNFASDP---DVTVRTKALGAISSLIRHNKPGIEAFRL---------A---NGYAALRDALG-----SESVKFQR  202 (392)
Q Consensus       143 l~~Ll~LL~s~~---~~~vr~kAl~ALS~lvR~~~~~~~~f~~---------~---gGl~~L~~lL~-----s~d~kl~~  202 (392)
                      +-.|+.+.-...   ...+|..|+|++-|.+.+|+.++..|+.         .   .+-.++..++.     +.|+---=
T Consensus        36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w  115 (312)
T PF04869_consen   36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW  115 (312)
T ss_dssp             HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence            444555433333   5689999999999999999999999872         1   11123333342     22332223


Q ss_pred             HHHHHHHHHhhcCCcchHHHHhc------------CchHHHHHhhc-----CCChHHHHHHHHHHHHHHcCCChhhhhhh
Q 016280          203 KALNLIQYLLNENASDCSVVDKL------------GFPRLMLHLAS-----SEDPDVREAALRGLLELAREKADGSAIKL  265 (392)
Q Consensus       203 kA~~lLs~L~~~~~~~~~~l~~~------------G~v~~Lv~LL~-----~~d~~v~E~aL~aL~~L~~~~~~~~~~~~  265 (392)
                      -|+.++.|++.+++..++.+.+-            -.++.+..+|.     ..++.++---|..|..-.-+++..+.+.+
T Consensus       116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL  195 (312)
T PF04869_consen  116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFL  195 (312)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            58889999999888887765432            24566666554     34666777778888888888887665542


Q ss_pred             hhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280          266 AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN  310 (392)
Q Consensus       266 ~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~  310 (392)
                       +.-..+..++..    +.+.+.+|  .+-  ..+|.-|+-+||-
T Consensus       196 -~~~s~l~~Li~~----~~~~~~~~--~~V--qGL~A~LLGicye  231 (312)
T PF04869_consen  196 -SEGSNLQSLIEF----SNQSSSED--VLV--QGLCAFLLGICYE  231 (312)
T ss_dssp             -CSTTHHHHHHHH----HS--TCCC--HHH--HHHHHHHHHHHHH
T ss_pred             -cCcchHHHHHHH----hhcCCCCc--chH--HHHHHHHHHHHHH
Confidence             333344444444    22222222  111  4789999999985

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.92  E-value=1.4  Score=47.87  Aligned_cols=139  Identities=14%  Similarity=0.087  Sum_probs=104.8

Q ss_pred             HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280           96 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus        96 ~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      ++-..++.|...+++.+..++..+..++.+++.-=+   ..+++.-.+|.|-.+....++..++..++-|+..++    .
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q  458 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----Q  458 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----H
Confidence            345667888889999999999999999999986433   345566678888777666678899999999999999    3


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHH
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV  242 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v  242 (392)
                      ..+.+....-+..+.++.++.++.+......+...+....+.. ..+....++|.++.+...+...+
T Consensus       459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccH
Confidence            4556656677788888888999999998888888877554443 34555677787777766544333

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=92.80  E-value=2.9  Score=46.76  Aligned_cols=171  Identities=22%  Similarity=0.230  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHcCC---hHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHH
Q 016280           72 PQDIEDMLDELQEHVESIDMANDLHSIGG---LAPLLGY-LKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPL  146 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGg---l~~Ll~l-L~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~L  146 (392)
                      -.++.++|+.+-..+++   +.--...|.   +-.++.. +...+..+-..|+.+|.-+|.-.. .++..  ..+.++.|
T Consensus       267 WK~R~Eale~l~~~l~e---~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~--~~~v~p~l  341 (815)
T KOG1820|consen  267 WKDRKEALEELVAILEE---AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY--AKNVFPSL  341 (815)
T ss_pred             hHHHHHHHHHHHHHHhc---cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH--HHhhcchH
Confidence            35666777777777664   432222222   3333433 345788899999999999997654 33332  23678888


Q ss_pred             HHhhCCCCCHH---HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHH
Q 016280          147 LSNFASDPDVT---VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVV  222 (392)
Q Consensus       147 l~LL~s~~~~~---vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~~~~l  222 (392)
                      +.-+..- -..   +.++++-++++.+   +       ...-.+.+..++...+++++..+..++...+.... .....-
T Consensus       342 ld~lkek-k~~l~d~l~~~~d~~~ns~---~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~  410 (815)
T KOG1820|consen  342 LDRLKEK-KSELRDALLKALDAILNST---P-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE  410 (815)
T ss_pred             HHHhhhc-cHHHHHHHHHHHHHHHhcc---c-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence            8877642 333   4445555555511   1       12245667888999999999997777777765433 323333


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .-.++++.++....+.+.+||..|+.++..+.....
T Consensus       411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence            334678888888889999999999999988766554

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.70  E-value=0.3  Score=42.90  Aligned_cols=74  Identities=16%  Similarity=0.101  Sum_probs=61.3

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCC
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      ++..|.+-|++.++.+..+|..+|-+|++|. +.++..|...+.+..|++++..     .++..|+.+.+..|-.-...+
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4666778889999999999999999999997 5788889888999999999853     357899999988776655444

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.66  E-value=11  Score=39.46  Aligned_cols=176  Identities=15%  Similarity=0.105  Sum_probs=107.0

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      ..++++.|+.+|..+.. +----.+=+-...+..++..|.. .+..+|..|..+|+.++.|.|..-..-.+ -++.++++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            34666777776655544 32222221112234556677765 78899999999999999988743221112 35667777


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--C
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--G  226 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G  226 (392)
                      .-. +++..|-+.|.-+.+-++..+.+-+.       +..+..++.+.|...-.-+...+..|+..  -.++.+...  .
T Consensus       379 aa~-ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~d  448 (516)
T KOG2956|consen  379 AAK-DSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFER--LSAEELLNLLPD  448 (516)
T ss_pred             HHh-CCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhh--cCHHHHHHhhhh
Confidence            633 34455555555554444433333222       33455666666666555566666777643  333433332  6


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +.|.+++--.+....||..|..+|..++..-
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~v  479 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV  479 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence            7788888888999999999999998887644

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.65  E-value=9  Score=40.89  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=116.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC---CHHHHHHHHHHHHHhhcCCcccHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~---~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      ..+...+.+++..-|..|..-+..+..+. ..-+.|+...++..|.+++.++.   ..++..-.+.|+|.+.-|.-.+..
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            34667888888888888999999888764 45566899999999999987653   346778888899988876544333


Q ss_pred             HHHHcChHHHHHHh--hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          179 AFRLANGYAALRDA--LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       179 ~f~~~gGl~~L~~l--L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      .+ ...++.-...+  .+..+..+-..|+..|-.++.......+.+.+.--+..|+..+...+..++..|+..|-.+...
T Consensus       165 ~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  165 SV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             ec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            32 22222222222  2234567777899999999887777777888888899999999999999999998888888777


Q ss_pred             CChh
Q 016280          257 KADG  260 (392)
Q Consensus       257 ~~~~  260 (392)
                      .+..
T Consensus       244 a~~~  247 (713)
T KOG2999|consen  244 APDD  247 (713)
T ss_pred             CChH
Confidence            7643

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.30  E-value=2.9  Score=42.06  Aligned_cols=164  Identities=12%  Similarity=0.124  Sum_probs=118.4

Q ss_pred             ChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHH
Q 016280           91 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEA--NGLEPLLSNFASDPDVTVRTKAL  163 (392)
Q Consensus        91 nA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-----~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl  163 (392)
                      .+..+++.+.+..|+..|..-+-+.|..++.+.+++....+     .+.+.+..+  ..+..|+.-..+   +++...+-
T Consensus        68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g  144 (335)
T PF08569_consen   68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCG  144 (335)
T ss_dssp             HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHH
Confidence            46678888989999999999999999999999999875421     233444433  345555554433   33445555


Q ss_pred             HHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchHHHHHhhcCCCh
Q 016280          164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPRLMLHLASSEDP  240 (392)
Q Consensus       164 ~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~---G~v~~Lv~LL~~~d~  240 (392)
                      .-|--++|+. .....++...-+.-+....+.++-.+...|...+..|++.++.....+...   .++.....||.+++.
T Consensus       145 ~mlRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY  223 (335)
T PF08569_consen  145 DMLRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY  223 (335)
T ss_dssp             HHHHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred             HHHHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence            5566666663 334455566777778888999999999999999999998777665555554   356778889999999


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 016280          241 DVREAALRGLLELAREKA  258 (392)
Q Consensus       241 ~v~E~aL~aL~~L~~~~~  258 (392)
                      -.+.+++..|+.|..+..
T Consensus       224 vtkrqslkLL~ellldr~  241 (335)
T PF08569_consen  224 VTKRQSLKLLGELLLDRS  241 (335)
T ss_dssp             HHHHHHHHHHHHHHHSGG
T ss_pred             EeehhhHHHHHHHHHchh
Confidence            999999999999987765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.23  E-value=5.6  Score=42.42  Aligned_cols=175  Identities=18%  Similarity=0.174  Sum_probs=115.7

Q ss_pred             HHHhhcCCCChHHHHHcC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHH
Q 016280           82 LQEHVESIDMANDLHSIG-GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT  160 (392)
Q Consensus        82 L~~lve~iDnA~d~~~lG-gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~  160 (392)
                      |.++...|++.-...+.+ .++.++.-+.++++.+|..|..-|-..++--+.. -...-.|.+..++.++.+.+....+.
T Consensus       232 l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~  310 (675)
T KOG0212|consen  232 LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKE  310 (675)
T ss_pred             HHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHH
Confidence            445555565655554433 4677788999999999999988888777754422 22223466777777766543322333


Q ss_pred             HH---HHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC
Q 016280          161 KA---LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS  237 (392)
Q Consensus       161 kA---l~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~  237 (392)
                      .|   -.-+..++.... ..+.|--..-+.+|.+.+.++....|..++.-+..|.+..+. .-......+.+.|+.-|.+
T Consensus       311 ~a~~~n~~l~~l~s~~~-~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd  388 (675)
T KOG0212|consen  311 YAQMVNGLLLKLVSSER-LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSD  388 (675)
T ss_pred             HHHHHHHHHHHHHhhhh-hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcC
Confidence            22   112333332221 122232234677888999999999999999999999865443 2233344678889999999


Q ss_pred             CChHHHHHHHHHHHHHHcCCCh
Q 016280          238 EDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       238 ~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      .+..|...+|..+.+++.+...
T Consensus       389 ~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  389 RSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             chhHHHHHHHHHHHHHhcCccc
Confidence            9999999999999999997763

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.20  E-value=9  Score=40.34  Aligned_cols=197  Identities=18%  Similarity=0.171  Sum_probs=120.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCH---HHHHHHHHcCCHHHHHHhhCCC------CCHHHHHHHHHHHHHhhcCCc
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNP---RSQQLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp---~~Q~~vl~~g~l~~Ll~LL~s~------~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..++...+.+-|..|.-.+..++.|..   ..+..+++.-|++-+=++|.+.      ++...+.-++.-|.|.||.-+
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5677777788889999999999998743   5556677876665555555432      345677888899999999755


Q ss_pred             ccHHHHHHcChHHHHHHhhcCC-C------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHH-HHHH
Q 016280          175 PGIEAFRLANGYAALRDALGSE-S------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV-REAA  246 (392)
Q Consensus       175 ~~~~~f~~~gGl~~L~~lL~s~-d------~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v-~E~a  246 (392)
                      -+...- ..+.||.|..++... |      .-+...+-..|..+++. +.....++..|.++.+.+.-.-++... ++-+
T Consensus        96 lAsh~~-~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEE-MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHH-HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            443322 346789888888642 2      22555666666666654 667778999999999987644333322 2333


Q ss_pred             HHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHH--HHHHHHHHHHhCCCccc
Q 016280          247 LRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREER--HLVDSLWNACYNEPSSL  315 (392)
Q Consensus       247 L~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~--~~~~~L~~~~f~~~~~~  315 (392)
                      +..+.-++....     |-..+...|..++..--.        |++..-.++  |+|.-|-.++|.+++++
T Consensus       174 l~Vlll~~~~~~-----cw~e~~~~flali~~va~--------df~~~~~a~KfElc~lL~~vl~~~~~e~  231 (698)
T KOG2611|consen  174 LKVLLLLVSKLD-----CWSETIERFLALIAAVAR--------DFAVLHNALKFELCHLLSAVLSSEYSEL  231 (698)
T ss_pred             HHHHHHHHHhcc-----cCcCCHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHHhCChHHh
Confidence            333332332221     112333444444332222        222233333  55888888888887655

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=92.18  E-value=10  Score=37.83  Aligned_cols=157  Identities=19%  Similarity=0.109  Sum_probs=99.8

Q ss_pred             CChHHHHHh-hcC---CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-------CC----HHHHHHhhC---C--CCCHHH
Q 016280           99 GGLAPLLGY-LKN---SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-------NG----LEPLLSNFA---S--DPDVTV  158 (392)
Q Consensus        99 Ggl~~Ll~l-L~s---~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-------g~----l~~Ll~LL~---s--~~~~~v  158 (392)
                      ..+..|+.+ |..   ..-.+|..|+.|+-....+|+..|.+|++.       +.    ...|+.-|.   .  ..|+--
T Consensus        34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~  113 (312)
T PF04869_consen   34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR  113 (312)
T ss_dssp             EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred             cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence            334555543 332   357899999999999999999999999975       11    123554433   1  124444


Q ss_pred             HHHHHHHHHHhhcCCcccHHHHHHc------Ch------HHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280          159 RTKALGAISSLIRHNKPGIEAFRLA------NG------YAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSV  221 (392)
Q Consensus       159 r~kAl~ALS~lvR~~~~~~~~f~~~------gG------l~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~  221 (392)
                      -..|...++.++++++.+++....-      .|      ++.+..+|..     .+.+++.--+.+|..-+.+++.....
T Consensus       114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~  193 (312)
T PF04869_consen  114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND  193 (312)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence            5688999999999998877665422      22      3335554433     46788887788888888888887777


Q ss_pred             HHhcC-chHHHHHhhc---CCChHHHHHHHHHHHHHHc
Q 016280          222 VDKLG-FPRLMLHLAS---SEDPDVREAALRGLLELAR  255 (392)
Q Consensus       222 l~~~G-~v~~Lv~LL~---~~d~~v~E~aL~aL~~L~~  255 (392)
                      |...| .++.|+....   +.+.-+|--++-.|+-+..
T Consensus       194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence            77665 7899998754   3455566666666666554

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.14  E-value=0.89  Score=39.31  Aligned_cols=74  Identities=19%  Similarity=0.120  Sum_probs=61.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCC--CCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFAS--DPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s--~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..|-+-|+++++.++..|..+|-.|+.|... ++..|.....+..|+.++..  ..+..|+.+++..|-+-...++
T Consensus        39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            56677788999999999999999999999854 88878887788889998876  4678999999998887766554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=91.91  E-value=1.7  Score=37.49  Aligned_cols=95  Identities=22%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC
Q 016280          159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS  237 (392)
Q Consensus       159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~  237 (392)
                      -......|+-+++..+.+..     .++..|.+-|+++++.++..|+.+|-.++.+... ....+....++..|+.++..
T Consensus        17 D~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~   91 (133)
T cd03561          17 DWALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN   91 (133)
T ss_pred             cHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence            35667788888887644333     3677888889999999999999999999977555 34555666788889998874


Q ss_pred             ---CChHHHHHHHHHHHHHHcCCC
Q 016280          238 ---EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       238 ---~d~~v~E~aL~aL~~L~~~~~  258 (392)
                         .+..|+++++..|...+....
T Consensus        92 ~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          92 SPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhc
Confidence               578899999999998776554

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.91  E-value=13  Score=41.66  Aligned_cols=173  Identities=19%  Similarity=0.142  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC-
Q 016280           76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-  154 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~-  154 (392)
                      -.++..|..++|+-+-+.-+...+.+...+..|++.++-|=-.|...+.++|.        +.....+|.|.....+.+ 
T Consensus       745 ~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce--------vy~e~il~dL~e~Y~s~k~  816 (982)
T KOG4653|consen  745 GYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE--------VYPEDILPDLSEEYLSEKK  816 (982)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH--------hcchhhHHHHHHHHHhccc
Confidence            46788999999988777777788999999999999998888888888877774        345567888887554332 


Q ss_pred             --CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHH
Q 016280          155 --DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-SVVDKLGFPRLM  231 (392)
Q Consensus       155 --~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~L  231 (392)
                        .+..+.+.=-||-.+++--.+-...+.. --+....+...+++...|..++..+..||+-..-.. +.+.  .++..+
T Consensus       817 k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~I  893 (982)
T KOG4653|consen  817 KLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLI  893 (982)
T ss_pred             CCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence              1345556667777776643332222222 233444555667788999999999999986432111 1111  223444


Q ss_pred             HHhhc-CCChHHHHHHHHHHHHHHcCCCh
Q 016280          232 LHLAS-SEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       232 v~LL~-~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      +.+.+ ++...+|..|+..|..+..+..+
T Consensus       894 l~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  894 LSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             HHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            55555 45577889999988888776653

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.91  E-value=6.2  Score=44.53  Aligned_cols=132  Identities=15%  Similarity=0.121  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC------C-CCHHHHHHHHHHHHHhhc---CCcc---cHHHHHH
Q 016280          117 AKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS------D-PDVTVRTKALGAISSLIR---HNKP---GIEAFRL  182 (392)
Q Consensus       117 ~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s------~-~~~~vr~kAl~ALS~lvR---~~~~---~~~~f~~  182 (392)
                      .+|..++-+++... ++.=.     |.++-+++.|.+      + .+..-+--|+.++|++++   ...+   -.+.|+ 
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l~-----k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl-  463 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETLP-----KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL-  463 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhhh-----hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH-
Confidence            36777787777543 22211     344555555551      1 234455567888887763   2222   223343 


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCCh
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                         +..+...++|+---+|.||||.++.++..+=.+...+  ..+++....+|. +.+-.|+-.|+-||..+..++.+
T Consensus       464 ---v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~  536 (1010)
T KOG1991|consen  464 ---VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ  536 (1010)
T ss_pred             ---HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence               3344455678889999999999999995433333222  234566667776 78889999999999999888864

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=91.85  E-value=1.3  Score=48.46  Aligned_cols=168  Identities=17%  Similarity=0.089  Sum_probs=99.8

Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChH-HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY-AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG  226 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl-~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G  226 (392)
                      ..|.+ +++.+|..|+-.+|+++.--... ..+...|-+ -+|..-|....+.+.--.+.+|..++....-.+-.=--.+
T Consensus       806 ~rLnn-ksa~vRqqaadlis~la~Vlktc-~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d  883 (1172)
T KOG0213|consen  806 WRLNN-KSAKVRQQAADLISSLAKVLKTC-GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD  883 (1172)
T ss_pred             HHhcC-CChhHHHHHHHHHHHHHHHHHhc-cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence            33444 56788888888888875422111 111112212 2456667777788877777777777643211111001137


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh--hhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHH---HHH
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELAREKADG--SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREER---HLV  301 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~--~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~---~~~  301 (392)
                      ++|.|..+|++.+..+++.+...++.|+...+..  .++. -..--+|.++|....+.|+.---+-+.....-+   ++.
T Consensus       884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL  962 (1172)
T KOG0213|consen  884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL  962 (1172)
T ss_pred             hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence            8999999999999999999999999999998853  2222 122267777887777776641111122222211   455


Q ss_pred             HHHHHHHhCCCcccccc
Q 016280          302 DSLWNACYNEPSSLRDK  318 (392)
Q Consensus       302 ~~L~~~~f~~~~~~~~~  318 (392)
                      .+|++-+-.+.-+.|-.
T Consensus       963 atLlnnLkvqeRq~Rvc  979 (1172)
T KOG0213|consen  963 ATLLNNLKVQERQNRVC  979 (1172)
T ss_pred             HHHHhcchHHHHHhchh
Confidence            66666655555555544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.66  E-value=4  Score=43.48  Aligned_cols=141  Identities=19%  Similarity=0.137  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhhC--CHHHHHHHHHcCC-HHHHHHh
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHA-NIRAKAGEVVTTIVQN--NPRSQQLVMEANG-LEPLLSN  149 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~-~IR~~Aa~vLg~iaqN--Np~~Q~~vl~~g~-l~~Ll~L  149 (392)
                      -...|+-=|.++|.-.-++--..-.|.+..++.++.+++. .++..|..+-+.+..-  .+...+. ++.|. +..|.+.
T Consensus       266 iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~  344 (675)
T KOG0212|consen  266 IQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKY  344 (675)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHH
Confidence            3456777777777765555555556777888888877655 6888887776544331  1111111 33343 3445555


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  217 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~  217 (392)
                      +.+ ...+.|..++-=|.-+-+..+ ++-......-++.|..-|...+..+-.+++++++++|.+...
T Consensus       345 l~~-~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  345 LSD-DREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             hhc-chHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            554 467899999999999887654 454444667888999999999999999999999999976444

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.64  E-value=13  Score=44.07  Aligned_cols=108  Identities=18%  Similarity=0.274  Sum_probs=77.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~-vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      +..++..|..+...+|..|..||+.++.-.|.+.-. -++.++...+     .|....||..|+--++-.+-.++....+
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~-----~DssasVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL-----NDSSASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh-----ccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence            455667888899999999999999999866633110 0111222222     2346789999999999888777766655


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      +     +..|..-...+...||.+|...++.+|.+.|..
T Consensus       893 y-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  893 Y-----YDQIIERILDTGVSVRKRVIKILRDICEETPDF  926 (1692)
T ss_pred             H-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence            5     344555566677999999999999999887765

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.53  E-value=9  Score=41.15  Aligned_cols=176  Identities=14%  Similarity=0.060  Sum_probs=105.2

Q ss_pred             ChHHHHHh----hcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280          100 GLAPLLGY----LKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       100 gl~~Ll~l----L~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      .+.|++.+    +++++=.=|+.|+.++|.+... +..+.-.+ -..++|.++.+ .+|+...++..+.||++.+..+-+
T Consensus       363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~-m~D~~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENE-MSDSCLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHh-cccceeehhhHHHHHHHHHHHHHH
Confidence            34555544    4566777899999999999875 33443333 34688888877 557788899999999999886543


Q ss_pred             ccHHHHHHcChHHHHHHh-hc--CCCHHHHHHHHHHHHHHhhcCCcch---HHHHhc---CchHHHHHh--hcCCChHHH
Q 016280          175 PGIEAFRLANGYAALRDA-LG--SESVKFQRKALNLIQYLLNENASDC---SVVDKL---GFPRLMLHL--ASSEDPDVR  243 (392)
Q Consensus       175 ~~~~~f~~~gGl~~L~~l-L~--s~d~kl~~kA~~lLs~L~~~~~~~~---~~l~~~---G~v~~Lv~L--L~~~d~~v~  243 (392)
                      ....   ..|-++..++. +.  .+.+++-...+|..-+|+.+-+...   .-+.-.   .++..|+.-  +...+.+.|
T Consensus       441 ~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R  517 (858)
T COG5215         441 MIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLR  517 (858)
T ss_pred             HhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHH
Confidence            2221   22333332222 21  2468888999999999986533221   111111   122223222  124567889


Q ss_pred             HHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHH
Q 016280          244 EAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERI  280 (392)
Q Consensus       244 E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~  280 (392)
                      ...-++|+.+..-+++.+.+.+.+...-....|.+-+
T Consensus       518 ~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~i  554 (858)
T COG5215         518 VSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECI  554 (858)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999888886655443333333333344333

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=91.25  E-value=4.3  Score=43.43  Aligned_cols=173  Identities=17%  Similarity=0.094  Sum_probs=108.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      .+-+.++++++...-|.-|++.++.++.++.-.  .+.+.+.+..|-...........|..++.|.-+.+.+-.+..+..
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy  213 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY  213 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence            345567888888889999999999999877633  355667777777765543333444456666666665533222221


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG  260 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~  260 (392)
                       ...-++.+.....+...++|..|..+...+...-+...   ++ -+++.++.-+....-.-..+++..|+.++..-+..
T Consensus       214 -iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q  288 (569)
T KOG1242|consen  214 -IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ  288 (569)
T ss_pred             -HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence             22345555555666789999999999988876432211   11 12333333233334455678889999999998877


Q ss_pred             hhhhhhhhHHHHHHHHHHHH
Q 016280          261 SAIKLAEDNEKLKQLLGERI  280 (392)
Q Consensus       261 ~~~~~~~~~~~L~~~L~~~~  280 (392)
                      ...|+....+.+.+.|..-.
T Consensus       289 Ls~~lp~iiP~lsevl~DT~  308 (569)
T KOG1242|consen  289 LSLCLPDLIPVLSEVLWDTK  308 (569)
T ss_pred             HHHHHhHhhHHHHHHHccCC
Confidence            66665666666666655433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.12  E-value=2.5  Score=46.58  Aligned_cols=140  Identities=18%  Similarity=0.261  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHHc---------------CCH--HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280          112 HANIRAKAGEVVTTIVQNNPRSQQLVMEA---------------NGL--EPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~---------------g~l--~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +|=++.+...+|+-+-||++..-+.+-.-               ++|  .....++.-.++..+|+.|+-+|+-.+-+..
T Consensus       247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d  326 (866)
T KOG1062|consen  247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD  326 (866)
T ss_pred             chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence            56677777777777777766555432210               011  1111122223456799999999998887765


Q ss_pred             ccHHHHH----------HcChH----HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCCh
Q 016280          175 PGIEAFR----------LANGY----AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP  240 (392)
Q Consensus       175 ~~~~~f~----------~~gGl----~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~  240 (392)
                      .+.+.+.          +..++    ..++.||+.+|..+|++|.-++..|+.++  +..     .+++.|+..|.+.+.
T Consensus       327 ~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-----~mv~eLl~fL~~~d~  399 (866)
T KOG1062|consen  327 NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-----VMVKELLEFLESSDE  399 (866)
T ss_pred             cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-----HHHHHHHHHHHhccH
Confidence            5543321          11111    24678888999999999999999888543  222     234556666766677


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 016280          241 DVREAALRGLLELAREKA  258 (392)
Q Consensus       241 ~v~E~aL~aL~~L~~~~~  258 (392)
                      +++..++.-+..++....
T Consensus       400 ~~k~~~as~I~~laEkfa  417 (866)
T KOG1062|consen  400 DFKADIASKIAELAEKFA  417 (866)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            777766666666655443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.07  E-value=3.5  Score=39.35  Aligned_cols=182  Identities=20%  Similarity=0.266  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHhhcCC-CChHHHHHcCChHHHH-H-------hhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Q 016280           75 IEDMLDELQEHVESI-DMANDLHSIGGLAPLL-G-------YLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEAN  141 (392)
Q Consensus        75 ~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll-~-------lL~s----~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g  141 (392)
                      +|.+|++|-+--++. |.|-.+-..-|++..+ .       +|+-    ....=|..-+-.|-.|....|+.+..|++..
T Consensus        62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ah  141 (315)
T COG5209          62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAH  141 (315)
T ss_pred             HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecc
Confidence            456888887777766 6787777766665432 2       2221    1222343334444445556799988888775


Q ss_pred             C---HHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 016280          142 G---LEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENA  216 (392)
Q Consensus       142 ~---l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~  216 (392)
                      .   +-+.+...++ .+-+.+|..+++.|++++.+..+-...|+ ....+|.+.+++...++--|.-|.|.+..++-++.
T Consensus       142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDv  221 (315)
T COG5209         142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDV  221 (315)
T ss_pred             cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch
Confidence            3   2334444333 34567999999999999999877766665 56899999999999998889999999888875433


Q ss_pred             cc---hHHHHhcC----chHHHH-HhhcCCChHHHHHHHHHHHHHHcC
Q 016280          217 SD---CSVVDKLG----FPRLML-HLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       217 ~~---~~~l~~~G----~v~~Lv-~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      ..   ++.+...-    ++..++ ++...+...+..+++++-..++.+
T Consensus       222 GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         222 GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            21   22222222    222332 233455666777777766655443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.06  E-value=4.1  Score=43.65  Aligned_cols=188  Identities=13%  Similarity=-0.010  Sum_probs=113.6

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC------------------H
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN------------------P  131 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN------------------p  131 (392)
                      +.+-...++-+|..+.. ..+.-.-..+--......+.+++++.+|..+|..-.++++...                  -
T Consensus       234 d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~  313 (858)
T COG5215         234 DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHG  313 (858)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcc
Confidence            34445566777666554 1122222222222344457889999999999999998877421                  1


Q ss_pred             HHHHHHHHcCCHHHHHHhhCC-CCC----H-HHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHH
Q 016280          132 RSQQLVMEANGLEPLLSNFAS-DPD----V-TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL  205 (392)
Q Consensus       132 ~~Q~~vl~~g~l~~Ll~LL~s-~~~----~-~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~  205 (392)
                      ..+..  -.+++|.|++||.+ ++|    . .+-..|..+|--...    ....-+-...+..+.+-+++++-.-+..|+
T Consensus       314 fa~aa--v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq----~~gd~i~~pVl~FvEqni~~~~w~nreaav  387 (858)
T COG5215         314 FARAA--VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ----LKGDKIMRPVLGFVEQNIRSESWANREAAV  387 (858)
T ss_pred             hHHHH--HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH----HhhhHhHHHHHHHHHHhccCchhhhHHHHH
Confidence            11111  12478999999875 221    1 232333222221111    111112334666677778888888899999


Q ss_pred             HHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh
Q 016280          206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK  264 (392)
Q Consensus       206 ~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~  264 (392)
                      .++.++.++....+-.-.-...+|.+..+..++..-+.+.++.+++.|+.+-+.....|
T Consensus       388 mAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~  446 (858)
T COG5215         388 MAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC  446 (858)
T ss_pred             HHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc
Confidence            99999987654444333334567777777777788899999999999988776444333

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=91.05  E-value=2.8  Score=44.78  Aligned_cols=55  Identities=18%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      +.-||..|+.|||-..-+-.   ..|........|.+|+...|..+|.+|.|++.++-
T Consensus       500 N~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         500 NNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            45688899999987665422   23334445678999999999999999999999985

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=91.00  E-value=14  Score=37.89  Aligned_cols=162  Identities=14%  Similarity=0.140  Sum_probs=108.5

Q ss_pred             HHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCC----------------------------------HHHHHHHHH
Q 016280           77 DMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSH----------------------------------ANIRAKAGE  121 (392)
Q Consensus        77 ~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~----------------------------------~~IR~~Aa~  121 (392)
                      +|+..|+-++...-+ ...|..+||+..++..|...-                                  ..+.+.-..
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            345555555655533 577888888888876654210                                  112223334


Q ss_pred             HHHHHhh---CCHHHHHHHHHcCCHHH-HHHhhCCCC--CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-
Q 016280          122 VVTTIVQ---NNPRSQQLVMEANGLEP-LLSNFASDP--DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-  194 (392)
Q Consensus       122 vLg~iaq---NNp~~Q~~vl~~g~l~~-Ll~LL~s~~--~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-  194 (392)
                      .|..+.+   ++...-..+++.+.++. |-.++.+..  ...+-..|+..++.++.+.|.....+.+.|-.+.+...+. 
T Consensus        83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~  162 (379)
T PF06025_consen   83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA  162 (379)
T ss_pred             HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence            5555555   33333333555344433 444444422  3568888999999999888888888888888888888887 


Q ss_pred             C---CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCC
Q 016280          195 S---ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED  239 (392)
Q Consensus       195 s---~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d  239 (392)
                      .   ++.++-.-.-.+|+.||- +....+.+.+.+.++.+..++.+++
T Consensus       163 ~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  163 KGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             cCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHH
Confidence            3   457888888889999997 4677888999999999999887654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=90.97  E-value=0.86  Score=35.62  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280          116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       116 R~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      .+.|.|++|+++.... -...+.+.+.++.++++..+.+...+|--|.|+|+-+.+..
T Consensus         4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~   60 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE   60 (73)
T ss_pred             HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence            4679999999998544 44545567999999999888778899999999999988753

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.91  E-value=3.2  Score=35.89  Aligned_cols=73  Identities=16%  Similarity=0.121  Sum_probs=60.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCH-HHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDV-TVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~-~vr~kAl~ALS~lvR~~  173 (392)
                      +..|.+-|.++++.++.+|..++-.++.|. +.++..|.....+..|+.++....+. .|+.+++..|-+-...+
T Consensus        39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            455777888999999999999999999994 67888888888999999988765443 49999998888766544

Unpublished observations. Domain of unknown function.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.88  E-value=2.6  Score=37.02  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=78.5

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHH
Q 016280          145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVD  223 (392)
Q Consensus       145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~~~~l~  223 (392)
                      .+|.-..++...+.-....-.|+-+++..+.+.     ..++..|.+-|.+.++.++..|+.+|-.++.+.. .....+.
T Consensus         7 ~~I~kATs~~l~~~dw~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva   81 (142)
T cd03569           7 ELIEKATSELLGEPDLASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA   81 (142)
T ss_pred             HHHHHHcCcccCccCHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence            344443333333334555666777887655432     3477888888999999999999999999997643 3455677


Q ss_pred             hcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCC
Q 016280          224 KLGFPRLMLHLAS-SEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       224 ~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +.+++..|+.++. ..+..|+++++..+.+-+...
T Consensus        82 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          82 SREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            7899999999987 567889999999998877654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.76  E-value=6.2  Score=39.25  Aligned_cols=149  Identities=15%  Similarity=0.097  Sum_probs=91.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      .-++.+|.+.++.||..|...+-.+..-  ..|...- +.-.++.|.+++.. .++  ..-|+.||.++..... -.+..
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~-l~~~l   79 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEE-LRKKL   79 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence            4577899999999999999777666654  2333211 12356667777654 333  6788899999886532 33333


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHHHHhhcCC-ChHH-HHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLMLHLASSE-DPDV-REAALRGLLE  252 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~------~G~v~~Lv~LL~~~-d~~v-~E~aL~aL~~  252 (392)
                      +.. =+..++..+..+...+-.-.|.++++|++........+..      .|+++.......++ +... -++.+..+.+
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            333 5667777777777788888999999999765443332221      34555444444432 2111 2455556666


Q ss_pred             HHcCC
Q 016280          253 LAREK  257 (392)
Q Consensus       253 L~~~~  257 (392)
                      |++-.
T Consensus       159 ls~~~  163 (353)
T KOG2973|consen  159 LSQFE  163 (353)
T ss_pred             Hhhhh
Confidence            65544

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.07  E-value=19  Score=39.71  Aligned_cols=88  Identities=22%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHHcCCHHHHHHhhC
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq--NNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      .+-+.+..|.-++.++---.+-+--+....+..=|....+.||.+|..+|+.+-.  +++++       .+...|+.++.
T Consensus       101 VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~-------~v~n~l~~liq  173 (892)
T KOG2025|consen  101 VRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC-------PVVNLLKDLIQ  173 (892)
T ss_pred             HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-------cHHHHHHHHHh
Confidence            3445555555555533222222223334555555566788999999999998752  34433       45677888899


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 016280          152 SDPDVTVRTKALGAISS  168 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~  168 (392)
                      +|++++||+.|+..|+.
T Consensus       174 nDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  174 NDPSDEVRRAALSNISV  190 (892)
T ss_pred             cCCcHHHHHHHHHhhcc
Confidence            99999999988776664

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=89.60  E-value=13  Score=39.78  Aligned_cols=131  Identities=21%  Similarity=0.228  Sum_probs=78.9

Q ss_pred             hHHHHHhhcC----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCCHHHHHHhhCC---CCCHHHHHHHHHHHHHh
Q 016280          101 LAPLLGYLKN----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLLSNFAS---DPDVTVRTKALGAISSL  169 (392)
Q Consensus       101 l~~Ll~lL~s----~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~l~~Ll~LL~s---~~~~~vr~kAl~ALS~l  169 (392)
                      +..+..++++    .++.++..|.-.+|+++.    +.+.+...++ ...++.|...|..   ..+...+.-++-||+|+
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            4455566654    356788888888887664    3333322222 2356666665542   34555677788888886


Q ss_pred             hcCCcccHHHHHHcChHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHH
Q 016280          170 IRHNKPGIEAFRLANGYAALRDALG---SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVRE  244 (392)
Q Consensus       170 vR~~~~~~~~f~~~gGl~~L~~lL~---s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E  244 (392)
                      -  ++...         ..|...+.   ..+..+|.-|+++|..++...+..        +-+.++.++.  ..+.++|-
T Consensus       474 g--~~~~i---------~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      474 G--HPSSI---------KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             C--ChhHH---------HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHH
Confidence            3  33332         33344443   235789999999999887544332        2334555555  45778888


Q ss_pred             HHHHHHH
Q 016280          245 AALRGLL  251 (392)
Q Consensus       245 ~aL~aL~  251 (392)
                      .|..+|.
T Consensus       535 aA~~~lm  541 (574)
T smart00638      535 AAVLVLM  541 (574)
T ss_pred             HHHHHHH
Confidence            8876664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.48  E-value=1.7  Score=48.35  Aligned_cols=172  Identities=19%  Similarity=0.187  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhhcC--------CCChHHHHHcCChHHHHHhhcCC--------CHHHHHHHHHHHHHHhhCCHHHHHHH
Q 016280           74 DIEDMLDELQEHVES--------IDMANDLHSIGGLAPLLGYLKNS--------HANIRAKAGEVVTTIVQNNPRSQQLV  137 (392)
Q Consensus        74 ~~~~aL~~L~~lve~--------iDnA~d~~~lGgl~~Ll~lL~s~--------~~~IR~~Aa~vLg~iaqNNp~~Q~~v  137 (392)
                      -.+..+..++.+++-        -.-|++|.++||+..++.+..-+        ..++...|..+|.-+ .--|.+|.++
T Consensus       568 ~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~-t~iP~iq~~L  646 (1516)
T KOG1832|consen  568 AVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIV-TSIPDIQKAL  646 (1516)
T ss_pred             HHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeee-EecchHHHHH
Confidence            344555555555542        34699999999999999887532        345667777777633 3568888877


Q ss_pred             HHc--------CCHHHHHHhhC--C-CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-CCCHHHHH---
Q 016280          138 MEA--------NGLEPLLSNFA--S-DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQR---  202 (392)
Q Consensus       138 l~~--------g~l~~Ll~LL~--s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-s~d~kl~~---  202 (392)
                      ...        .|+..++..-.  . ..|++++..|+..|-+++-.-|......        +..+.. +.+.+...   
T Consensus       647 a~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~  718 (1516)
T KOG1832|consen  647 AHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAG  718 (1516)
T ss_pred             HHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCC
Confidence            754        36666655422  1 2478999999999999887655433322        111111 11211111   


Q ss_pred             -HHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC-----ChHHHHHHHHHHHHHHcCCC
Q 016280          203 -KALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE-----DPDVREAALRGLLELAREKA  258 (392)
Q Consensus       203 -kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~-----d~~v~E~aL~aL~~L~~~~~  258 (392)
                       |..-+-..|.    .-...+.....|..|+.||+-.     -..+|..|.++|.-|+++..
T Consensus       719 ~ks~~le~~l~----~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  719 TKSAKLEQVLR----QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             CchHHHHHHHH----HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence             1111111111    1123455667899999999833     24588889999999988875

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.42  E-value=22  Score=34.52  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHh
Q 016280           76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-----~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~L  149 (392)
                      -.+|.-|+-...--|....|.+...--.+..+|..     +..-+|-.+..+||.+++|.. ++-..++..+++|..++.
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            46676666667777899999998865556677753     567899999999999999855 666667788999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHH-------HHH-cChHH-HHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEA-------FRL-ANGYA-ALRDALGSESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~-------f~~-~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~  213 (392)
                      +... ++.-+.-|+|-+--++-+. .+...       |.. ..-+. .+.++.+.++.++...+......|+.
T Consensus       177 me~G-SelSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  177 MESG-SELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             Hhcc-cHHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            8774 5567777888777766543 23222       211 11122 22233344567777766666666653

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=89.41  E-value=3.7  Score=36.77  Aligned_cols=142  Identities=20%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             hHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          101 LAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       101 l~~Ll~lL~s~-~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      ++.|+++|+++ +..+|..|..+||.+-.=.|...+.+....-     .....+.........+     ...+..+..+.
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l-----~~~~~~~~~ee   81 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISL-----PMMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHH-----hhccCCCchHH
Confidence            56677888764 6899999999999998877855442222111     0000001111111111     22233346677


Q ss_pred             HHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          180 FRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~-G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      |+-.-.+..|++.|+++. ......+..++.++...-...+  +--. -++|.++..+++.+...+|..+.-|..|+
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c--v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC--VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc--hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            778888899999998765 4555577778877774422222  1111 46777888888666688888877776664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.17  E-value=1.8  Score=47.30  Aligned_cols=70  Identities=26%  Similarity=0.385  Sum_probs=59.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +.||.+++++.++-+|..|+-+++.+-.-++.   .+...|.+..|-.++. |.++.|-.+|+.|++.+...++
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence            47888999999999999999999999988773   3667788888888877 5688999999999999987654

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=89.03  E-value=4  Score=40.84  Aligned_cols=72  Identities=22%  Similarity=0.255  Sum_probs=61.1

Q ss_pred             ChHHHHHHhhcCCCHH-HHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          184 NGYAALRDALGSESVK-FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       184 gGl~~L~~lL~s~d~k-l~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      .-+..|.+++++..+. .-.-||.=|.+++...|+....+.+.|+=+.+++|++++|++++-.|+.|+..+.+
T Consensus       356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            3566788888886544 44458888889999999999999999999999999999999999999999987654

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.00  E-value=6  Score=34.88  Aligned_cols=94  Identities=16%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC-
Q 016280          160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS-  237 (392)
Q Consensus       160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~-  237 (392)
                      ....-.|+-+++..+.+.     ..++..|.+-|.+.++.++..|+.+|-.++.+... ....+.+..++..|+.++.. 
T Consensus        18 w~~il~icD~I~~~~~~~-----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~   92 (144)
T cd03568          18 WGLILDVCDKVKSDENGA-----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR   92 (144)
T ss_pred             HHHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc
Confidence            344555666676653332     24677788888899999999999999999976554 34466777899999999987 


Q ss_pred             CChHHHHHHHHHHHHHHcCCC
Q 016280          238 EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       238 ~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+..|+++++..|...+....
T Consensus        93 ~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          93 VHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             CCHHHHHHHHHHHHHHHHHhC
Confidence            788999999999988776553

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.95  E-value=2.3  Score=46.42  Aligned_cols=115  Identities=21%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcCCcc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      +..++.+|.+++-.+|..-..+.|+++.+-..--+ .+++  .-+..|+.++.   +|..+-+|.||+..+++++.-+..
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~q-m~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk  379 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQ-MVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK  379 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchh-hHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence            46677899999999999999999998864211111 1221  12445555543   457889999999999999853321


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      -  .-..+.-+....+.++..+.-||++|..+++.|+..+|-.
T Consensus       380 ~--~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~  420 (1128)
T COG5098         380 T--VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA  420 (1128)
T ss_pred             c--cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence            1  0112334566778899999999999999999999776643

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.84  E-value=8.9  Score=42.48  Aligned_cols=161  Identities=14%  Similarity=0.202  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD  153 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~  153 (392)
                      .+.+|+..|.-++-.-+++.++     +|.+++...+.+.+||...---|-.-|.++|..  +++.   |..+=+-| .|
T Consensus        51 ~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--ALLS---IntfQk~L-~D  119 (968)
T KOG1060|consen   51 LKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--ALLS---INTFQKAL-KD  119 (968)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--eeee---HHHHHhhh-cC
Confidence            3445555555555555666665     677777777777777776666665566555532  1121   22222222 35


Q ss_pred             CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 016280          154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH  233 (392)
Q Consensus       154 ~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~  233 (392)
                      ++.-+|.-|+.++|+| |-.  ...-+    .+-.+.++.....+.||..|+.+|-.|-+-+++.+..+     ++.+-.
T Consensus       120 pN~LiRasALRvlSsI-Rvp--~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~  187 (968)
T KOG1060|consen  120 PNQLIRASALRVLSSI-RVP--MIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKK  187 (968)
T ss_pred             CcHHHHHHHHHHHHhc-chh--hHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHH
Confidence            7889999999999996 321  11111    23345677778889999999999999988777776644     345556


Q ss_pred             hhcCCChHHHHHHHHHHHHHHcCC
Q 016280          234 LASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       234 LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ||.+.++-|.-.|+.|...++-+.
T Consensus       188 LLaD~splVvgsAv~AF~evCPer  211 (968)
T KOG1060|consen  188 LLADRSPLVVGSAVMAFEEVCPER  211 (968)
T ss_pred             HhcCCCCcchhHHHHHHHHhchhH
Confidence            778888888877777765544433

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=88.82  E-value=2.8  Score=36.48  Aligned_cols=73  Identities=22%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHH---HHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVT---VRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~---vr~kAl~ALS~lvR~~  173 (392)
                      +..|-+-|.+.++.++..|..++-.++.|. +.++..|.....+..|..++.+.....   |+.+++-.|..-...+
T Consensus        44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            556778889999999999999999999997 688888877778888888877544443   8999987777655433

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=88.79  E-value=3.3  Score=40.62  Aligned_cols=111  Identities=23%  Similarity=0.266  Sum_probs=78.0

Q ss_pred             CCHHHHHH-hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-
Q 016280          141 NGLEPLLS-NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-  218 (392)
Q Consensus       141 g~l~~Ll~-LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-  218 (392)
                      +.+..||. -+.+ .+..+|..|+-+++-.+--+....     ..-++.+.+.++.++..++..|+.++.+++..+... 
T Consensus        26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            34455553 2344 577999999999997665444222     224677888887789999999999999998653322 


Q ss_pred             hHH-------HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          219 CSV-------VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       219 ~~~-------l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ...       .....+++.+...+.+.+++++..|+..++.|.-.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            111       122356778888889999999999999999875544

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.67  E-value=8.6  Score=34.44  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh--HHHHHHhhcCC-CHHHHHHHHHHHHHHhhc---CC
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--YAALRDALGSE-SVKFQRKALNLIQYLLNE---NA  216 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG--l~~L~~lL~s~-d~kl~~kA~~lLs~L~~~---~~  216 (392)
                      +..+..+|.+ .+..-|..++.-+..++..++  .+.|...++  +..|..+|+++ ...++.-|+.++..|...   .+
T Consensus        27 ~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   27 VTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4456677666 467889999999999998764  355544443  34567777764 478888888888888743   33


Q ss_pred             cchHHHHhc---CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          217 SDCSVVDKL---GFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       217 ~~~~~l~~~---G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      +....+..-   ++++.++.++..  ..+.+.++.+|..+....+-
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            322222222   455666666655  67889999999999887763

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=88.65  E-value=9.1  Score=37.16  Aligned_cols=145  Identities=12%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHH
Q 016280           74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~-----~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll  147 (392)
                      ..-.+|.-|+-....-|....|.+....-.|..+|+..     ...+|-.+..+||.++.. ++++...+++...+|..+
T Consensus        66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            34567777777777888999999999777777888653     356999999999999984 668888888889999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCc-------ccHHHHHHcChHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNK-------PGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDC  219 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~-------~~~~~f~~~gGl~~L~~-lL~s~d~kl~~kA~~lLs~L~~~~~~~~  219 (392)
                      +.+... ++--|.-|.|-+--+.-+..       .....+.....+..++. +...++.++.+-.......|+. ++..+
T Consensus       146 r~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar  223 (262)
T PF04078_consen  146 RIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAR  223 (262)
T ss_dssp             HHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHH
T ss_pred             HHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHH
Confidence            998774 66778889888887765421       11222223334443333 3334566666666666666653 34433


Q ss_pred             H
Q 016280          220 S  220 (392)
Q Consensus       220 ~  220 (392)
                      +
T Consensus       224 ~  224 (262)
T PF04078_consen  224 E  224 (262)
T ss_dssp             H
T ss_pred             H
Confidence            3

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=88.62  E-value=1.6  Score=34.17  Aligned_cols=67  Identities=13%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280          159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGF  227 (392)
Q Consensus       159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~  227 (392)
                      .+.|+||++++.. .+.+...+...+-++.++++... +...+|--|.+.|.-+ ....+..+.+.+.|+
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lgli-s~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLI-SSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHH-hCCHHHHHHHHHcCC
Confidence            5789999999976 45666666667999999999875 5567777666666544 456777888888876

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.61  E-value=5.3  Score=42.96  Aligned_cols=182  Identities=20%  Similarity=0.258  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhhC-CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC
Q 016280           32 DRRWFMEAMQSQ-TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN  110 (392)
Q Consensus        32 ~~~~L~~Al~~~-~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s  110 (392)
                      -|+||.+|+... +.+-++.|++.+          .++.++..+...+|-.|...+.  .....+     +..+..++++
T Consensus       380 ~r~~~lDal~~aGT~~av~~i~~~I----------~~~~~~~~ea~~~l~~l~~~~~--~Pt~e~-----l~~l~~L~~~  442 (618)
T PF01347_consen  380 ARKIFLDALPQAGTNPAVKFIKDLI----------KSKKLTDDEAAQLLASLPFHVR--RPTEEL-----LKELFELAKS  442 (618)
T ss_dssp             HHHHHHHHHHHH-SHHHHHHHHHHH----------HTT-S-HHHHHHHHHHHHHT-------HHH-----HHHHHHHHT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHhhcC--CCCHHH-----HHHHHHHHhC
Confidence            345555554442 333344444422          2233444444455544444442  122222     3344445544


Q ss_pred             ----CCHHHHHHHHHHHHHHhhCCHHHHH-----------HHHHcCCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcC
Q 016280          111 ----SHANIRAKAGEVVTTIVQNNPRSQQ-----------LVMEANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRH  172 (392)
Q Consensus       111 ----~~~~IR~~Aa~vLg~iaqNNp~~Q~-----------~vl~~g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~  172 (392)
                          .++.++..|.-.+|+++..  .|..           ..+....++.|...|.   +..+...+..++-||+|+-  
T Consensus       443 ~~~~~~~~l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--  518 (618)
T PF01347_consen  443 PKVKNSPYLRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--  518 (618)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--
T ss_pred             ccccCChhHHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--
Confidence                4567888888888877642  1111           1122235566666655   3456788899999999983  


Q ss_pred             CcccHHHHHHcChHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHHHHH
Q 016280          173 NKPGIEAFRLANGYAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVREAAL  247 (392)
Q Consensus       173 ~~~~~~~f~~~gGl~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E~aL  247 (392)
                      ++         ..++.|..++...   +..+|..|+++|..+....+.        .+.+.+..++.  ..+.++|-.|.
T Consensus       519 ~~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~  581 (618)
T PF01347_consen  519 HP---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAY  581 (618)
T ss_dssp             -G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred             Cc---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHH
Confidence            33         2455667777665   689999999999988654332        12345666665  45678898888


Q ss_pred             HHHH
Q 016280          248 RGLL  251 (392)
Q Consensus       248 ~aL~  251 (392)
                      .+|.
T Consensus       582 ~~lm  585 (618)
T PF01347_consen  582 LILM  585 (618)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.60  E-value=8.7  Score=42.11  Aligned_cols=160  Identities=18%  Similarity=0.206  Sum_probs=101.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ..--+.||.++.-.=+.-....++-+..-|.+.-..++     ..+-.=|.+ .++....-|+.+|+++-  .......|
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvi-----n~iknDL~s-rn~~fv~LAL~~I~niG--~re~~ea~  147 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVI-----NSIKNDLSS-RNPTFVCLALHCIANIG--SREMAEAF  147 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHH-----HHHHhhhhc-CCcHHHHHHHHHHHhhc--cHhHHHHh
Confidence            33445788776444444445555555544443323222     222222233 35677788999999873  23334444


Q ss_pred             HHcChHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          181 RLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d--~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                        +.-++   ++|-|.+  .-+|.||+-.|..|....|+   .+---++..++++||.+.|..+...+...+..|+...+
T Consensus       148 --~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p  219 (938)
T KOG1077|consen  148 --ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP  219 (938)
T ss_pred             --hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence              22233   5555543  78999999999999887554   33344789999999999999999999999999999998


Q ss_pred             hhhhhhhhhhHHHHHHHH
Q 016280          259 DGSAIKLAEDNEKLKQLL  276 (392)
Q Consensus       259 ~~~~~~~~~~~~~L~~~L  276 (392)
                      +....|+.-...+|....
T Consensus       220 ~~yk~~~~~avs~L~riv  237 (938)
T KOG1077|consen  220 ESYKTCLPLAVSRLSRIV  237 (938)
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            766655344444444433

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=88.30  E-value=9.4  Score=37.09  Aligned_cols=166  Identities=17%  Similarity=0.104  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhhcCCC--------ChHHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 016280           75 IEDMLDELQEHVESID--------MANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANG  142 (392)
Q Consensus        75 ~~~aL~~L~~lve~iD--------nA~d~~~lGgl~~Ll~lL~s~~----~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~  142 (392)
                      .+..++.|..|+.-.|        +.--+.=++.+|.++.-+.++.    ...-..+|..|+.+|.++        +...
T Consensus        79 ~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~  150 (262)
T PF14225_consen   79 YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPN  150 (262)
T ss_pred             HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCcc
Confidence            3455555555554322        3333334456666666666655    234446667888887432        2345


Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      +..++..+.+..-.+...-.--+++++..++-+..    ....+..|..+|.....-+|.+++..|..|...-+..+.  
T Consensus       151 La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--  224 (262)
T PF14225_consen  151 LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--  224 (262)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence            66666665543221122222233344444432211    334667789999999999999999999999976544433  


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ....++..+..+|++   +....|+.+|-.+++-+
T Consensus       225 ~~~dlispllrlL~t---~~~~eAL~VLd~~v~~s  256 (262)
T PF14225_consen  225 HGADLISPLLRLLQT---DLWMEALEVLDEIVTRS  256 (262)
T ss_pred             cchHHHHHHHHHhCC---ccHHHHHHHHHHHHhhc
Confidence            444578888888876   44566677666655433

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=87.99  E-value=30  Score=34.34  Aligned_cols=138  Identities=20%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhhcCC---CChHHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHh---hCCHHHHHHHHHcCCHH
Q 016280           73 QDIEDMLDELQEHVESI---DMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIV---QNNPRSQQLVMEANGLE  144 (392)
Q Consensus        73 e~~~~aL~~L~~lve~i---DnA~d~~~lGgl~~Ll~lL~s--~~~~IR~~Aa~vLg~ia---qNNp~~Q~~vl~~g~l~  144 (392)
                      ++..-|+..+.-++=++   +.+..+++. ..++|.+.+..  ....+|..++.+||-++   .+.+..-...++.  +.
T Consensus       101 ~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~--le  177 (309)
T PF05004_consen  101 EEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES--LE  177 (309)
T ss_pred             HHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH--HH
Confidence            55556666666665553   567777663 35666677764  35667888887777654   3444333322221  22


Q ss_pred             HHH--HhhCCC---------CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280          145 PLL--SNFASD---------PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       145 ~Ll--~LL~s~---------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~  213 (392)
                      .+.  .....+         ++..+...|+.+-+-|+..-+...-.-.....++.|..+|.+++..||.-|.-+|.-|..
T Consensus       178 ~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  178 SIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            111  112221         235789999999998887766532222235579999999999999999999998887754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=87.99  E-value=1.2  Score=39.66  Aligned_cols=101  Identities=18%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHH-cCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280          107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN  184 (392)
Q Consensus       107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~-~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g  184 (392)
                      ++...+.+-...+..+++.+-+--|.+-..++. .|.++.++.+.. ...+..++..++-+|+.-|-+  .....|+..+
T Consensus        51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~  128 (157)
T PF11701_consen   51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN  128 (157)
T ss_dssp             HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred             HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence            333333335667899999999998977776664 466677777776 235789999999999998854  4567778899


Q ss_pred             hHHHHHHhhc-CCCHH-HHHHHHHHHH
Q 016280          185 GYAALRDALG-SESVK-FQRKALNLIQ  209 (392)
Q Consensus       185 Gl~~L~~lL~-s~d~k-l~~kA~~lLs  209 (392)
                      |++.|...++ +++.. +|..|+-.|.
T Consensus       129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen  129 YVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHh
Confidence            9999999995 66676 8888876654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.84  E-value=15  Score=43.39  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=99.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      +|.|.++=-.|+..||..-..+.++++++...+-+..++. .+.-|+.-+.+ ..=-||..+..||+-++|+.+..+..-
T Consensus      1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNE-ILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            5666676667999999999999999999866665555443 56666665554 234689999999999999976433221


Q ss_pred             HHcChHHHHHHhhcCCCHHHH---HHHHHHHHHHhhc--CCc---chHHHHhcCchHHHHH-hhcCCChHHHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQ---RKALNLIQYLLNE--NAS---DCSVVDKLGFPRLMLH-LASSEDPDVREAALRGLL  251 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~---~kA~~lLs~L~~~--~~~---~~~~l~~~G~v~~Lv~-LL~~~d~~v~E~aL~aL~  251 (392)
                      -...-+..+.+.+.+-.+.+|   .+++.+|+.||-.  ++.   .-..+.+ -++|.|.. -+-+.-..+|..++.+|.
T Consensus      1078 ~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLM 1156 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHH
Confidence            123456666677665444444   4566667777621  111   1111111 22333322 112556789999999999


Q ss_pred             HHHcCCCh
Q 016280          252 ELAREKAD  259 (392)
Q Consensus       252 ~L~~~~~~  259 (392)
                      .|+.+...
T Consensus      1157 dl~Kssg~ 1164 (1702)
T KOG0915|consen 1157 DLAKSSGK 1164 (1702)
T ss_pred             HHHHhchh
Confidence            99988763

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.84  E-value=4.5  Score=35.01  Aligned_cols=93  Identities=18%  Similarity=0.150  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcCC
Q 016280          160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASSE  238 (392)
Q Consensus       160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~~  238 (392)
                      ....-.|+-+++..+.+..     .++..|.+-|.++++.++..|+.+|-.++.+... ....+.+.+++..|+.++...
T Consensus        18 w~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~   92 (133)
T smart00288       18 WELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK   92 (133)
T ss_pred             HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence            4556667778877654333     2567788889999999999999999999976433 345666778999999988854


Q ss_pred             C-hH-HHHHHHHHHHHHHcCC
Q 016280          239 D-PD-VREAALRGLLELAREK  257 (392)
Q Consensus       239 d-~~-v~E~aL~aL~~L~~~~  257 (392)
                      . .. |+++++..+.+-+...
T Consensus        93 ~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       93 YPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             CCcHHHHHHHHHHHHHHHHHH
Confidence            3 33 9999999998876654

Unpublished observations. Domain of unknown function.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.52  E-value=29  Score=39.10  Aligned_cols=139  Identities=12%  Similarity=0.200  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhcCCCChHHHHHcCChHH-HHHh-h-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280           77 DMLDELQEHVESIDMANDLHSIGGLAP-LLGY-L-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD  153 (392)
Q Consensus        77 ~aL~~L~~lve~iDnA~d~~~lGgl~~-Ll~l-L-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~  153 (392)
                      -..+.|.. +...|.+-....-.-+-| ++.+ + .++++.|-..+-.++-.+.|+ ..++.-.. .-.||.|++.+...
T Consensus       549 llmE~Ls~-vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~-e~~iPslisil~~~  625 (1005)
T KOG2274|consen  549 LLMEALSS-VVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQ-ERLIPSLISVLQLN  625 (1005)
T ss_pred             HHHHHHHH-HhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchH-HHHHHHHHHHHcCc
Confidence            33444443 445666655544444444 4443 3 357888888888888888883 44544322 24689999998754


Q ss_pred             C---CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280          154 P---DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASD  218 (392)
Q Consensus       154 ~---~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l-L~s~d~kl~~kA~~lLs~L~~~~~~~  218 (392)
                      .   ......-|+.-|.+++|+.++-...-+..-.++.+.++ |+++|..+-..+--+|++++....+.
T Consensus       626 ~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq  694 (1005)
T KOG2274|consen  626 ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ  694 (1005)
T ss_pred             ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence            2   24677788999999999988766555566688888887 57888888889999999998754443

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.50  E-value=5.3  Score=34.75  Aligned_cols=109  Identities=23%  Similarity=0.196  Sum_probs=75.7

Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHH
Q 016280          144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVV  222 (392)
Q Consensus       144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~~~~l  222 (392)
                      ..+|.-..++...+.-..+..-|+-+++..+.+..     .++..|.+-|.+.+++++..|+.+|-.++.+.. .....+
T Consensus         7 ~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev   81 (140)
T PF00790_consen    7 TELIEKATSESLPSPDWSLILEICDLINSSPDGAK-----EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV   81 (140)
T ss_dssp             HHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34454444332222234566678888887644332     367778888999999999999999999997653 334556


Q ss_pred             HhcCchHHHHHhhcC-CChH---HHHHHHHHHHHHHcCC
Q 016280          223 DKLGFPRLMLHLASS-EDPD---VREAALRGLLELAREK  257 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~-~d~~---v~E~aL~aL~~L~~~~  257 (392)
                      ....++..|..++.. ....   |+++++..|...+...
T Consensus        82 ~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   82 ASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             TSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            667889999998874 3333   8999999998877766

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=87.33  E-value=8.2  Score=43.98  Aligned_cols=147  Identities=13%  Similarity=0.061  Sum_probs=99.4

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      +.++.|+.-|++.+..|||.||.-+|.+++.-|..    +...++...+.++.--.+...=--|.-||+-+.+-.---..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            34666777788899999999999999999988832    22345666777655333344445888888888765432222


Q ss_pred             HHHHcChHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHH-----hhcCCChHHHH
Q 016280          179 AFRLANGYAALRDALGS--------ESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLH-----LASSEDPDVRE  244 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s--------~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~-----LL~~~d~~v~E  244 (392)
                      .+  ...++++...|.-        ....+|-.||+++-.+.+..... .+     +++..|..     -+-+.+.++|.
T Consensus       417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~-----p~l~~L~s~LL~~AlFDrevncRR  489 (1133)
T KOG1943|consen  417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK-----PVLQSLASALLIVALFDREVNCRR  489 (1133)
T ss_pred             HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh-----HHHHHHHHHHHHHHhcCchhhHhH
Confidence            22  3467777776653        34679999999999999764433 22     23333333     33477889999


Q ss_pred             HHHHHHHHHHcC
Q 016280          245 AALRGLLELARE  256 (392)
Q Consensus       245 ~aL~aL~~L~~~  256 (392)
                      .|..|+...+.-
T Consensus       490 AAsAAlqE~VGR  501 (1133)
T KOG1943|consen  490 AASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHHHhcc
Confidence            999999887654

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.18  E-value=13  Score=40.31  Aligned_cols=177  Identities=13%  Similarity=0.092  Sum_probs=100.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcC----C------CHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKN----S------HANIRAKAGEVVTTIVQNNPRSQQLVME  139 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s----~------~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~  139 (392)
                      .|++....|.++.+.++..+- +..+.-+..++.+..++-.    +      .+.++......-        ..-+.+++
T Consensus       204 nPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr--------~yE~~Ll~  275 (704)
T KOG2153|consen  204 NPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLR--------EYEQALLK  275 (704)
T ss_pred             CHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHH--------HHHHHHHH
Confidence            456677788888888887765 6777666666655444321    1      111111111110        01111111


Q ss_pred             c--CCHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280          140 A--NGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN  215 (392)
Q Consensus       140 ~--g~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~  215 (392)
                      .  ..+..|..+....  ..+....-+.-|++|+|.=-......-+..+-+..+++.+.++...+..-++..+.++..++
T Consensus       276 ~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D  355 (704)
T KOG2153|consen  276 QYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND  355 (704)
T ss_pred             HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence            1  2345555544322  11222223334444544211111111134567778888888888888899999999999765


Q ss_pred             CcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          216 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       216 ~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .   ..-...++|..+..+++.-+.+++..++.++.+|-.+..
T Consensus       356 ~---~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed  395 (704)
T KOG2153|consen  356 N---GGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDED  395 (704)
T ss_pred             C---ccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhh
Confidence            4   233345677888888888888999999999988855444

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=87.18  E-value=42  Score=35.58  Aligned_cols=146  Identities=12%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhhcCCCC--hHH--HHHcCChHHHHHhhcCC-------CHHHHHHHHHHHHHHhhCCH-HHHHHHHHc
Q 016280           73 QDIEDMLDELQEHVESIDM--AND--LHSIGGLAPLLGYLKNS-------HANIRAKAGEVVTTIVQNNP-RSQQLVMEA  140 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDn--A~d--~~~lGgl~~Ll~lL~s~-------~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~  140 (392)
                      +++-.+|--...+|.+-|.  ++.  +.+.=|++.+=++|.+.       +.-.|.-+..+++..|+.-+ ..-+.++  
T Consensus        26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--  103 (698)
T KOG2611|consen   26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--  103 (698)
T ss_pred             HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--
Confidence            4444455555555654442  333  66666788888888642       44578889999998888633 1112333  


Q ss_pred             CCHHHHHHhhCCCCCHH------HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC----CCHHHHHHHHHHHHH
Q 016280          141 NGLEPLLSNFASDPDVT------VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS----ESVKFQRKALNLIQY  210 (392)
Q Consensus       141 g~l~~Ll~LL~s~~~~~------vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s----~d~kl~~kA~~lLs~  210 (392)
                      +.||.|+..+....++.      +...+-.+|-.+. +.+++....+..||++.+.++-.-    .+..+..+...++..
T Consensus       104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~  182 (698)
T KOG2611|consen  104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVS  182 (698)
T ss_pred             HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence            45888888876432222      4444444444444 448899999999999999987543    346666666555554


Q ss_pred             HhhcCCcchHH
Q 016280          211 LLNENASDCSV  221 (392)
Q Consensus       211 L~~~~~~~~~~  221 (392)
                      =+..-++....
T Consensus       183 ~~~cw~e~~~~  193 (698)
T KOG2611|consen  183 KLDCWSETIER  193 (698)
T ss_pred             hcccCcCCHHH
Confidence            44444444433

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=87.13  E-value=6.2  Score=34.63  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC
Q 016280          159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS  237 (392)
Q Consensus       159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~  237 (392)
                      -....-.|+=+++..+.+.     ..++..|.+-|++.++.++..|+.+|-.++.+... ....+.+.+++..|+.++..
T Consensus        18 dw~~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~   92 (139)
T cd03567          18 DWEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP   92 (139)
T ss_pred             CHHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence            3455666666776554332     34777888889999999999999999999975443 34567778899899999863


Q ss_pred             ------CChHHHHHHHHHHHHHHcCCC
Q 016280          238 ------EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       238 ------~d~~v~E~aL~aL~~L~~~~~  258 (392)
                            .+..|+++++..|..-+...+
T Consensus        93 k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          93 KYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence                  578999999999988776553

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=86.83  E-value=7.3  Score=43.65  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             ChHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---CCCC----HHH
Q 016280           91 MANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SDPD----VTV  158 (392)
Q Consensus        91 nA~d~~~lGgl~~Ll~lL~s~-----~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s~~~----~~v  158 (392)
                      .++.|.+.||+..++.+|.+-     ...+-.....++..|+.- +.+++++++.|+++.|+..|.   ....    ..+
T Consensus       109 ~~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i  187 (802)
T PF13764_consen  109 IASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEI  187 (802)
T ss_pred             HHHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchH
Confidence            467788899999999998762     345667788888988865 889999999999999998764   2222    455


Q ss_pred             HHHHHHHHHHhhcCCc----ccHHHHHHcCh--------HHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          159 RTKALGAISSLIRHNK----PGIEAFRLANG--------YAALRDALGSE----SVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       159 r~kAl~ALS~lvR~~~----~~~~~f~~~gG--------l~~L~~lL~s~----d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      -.+.+--|-.++..-.    .....+....|        +..|...+.++    +.++..-.+.+|-+|+-++++..+.+
T Consensus       188 ~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L  267 (802)
T PF13764_consen  188 AEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL  267 (802)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence            5666655555543211    11112222333        67777777764    58888888889999987766654433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.55  E-value=17  Score=39.11  Aligned_cols=104  Identities=18%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 016280          144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD  223 (392)
Q Consensus       144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~  223 (392)
                      ..+|.....  +..+++-|..-|.-..+++|.....     ++..+..+....+..+|..|..-|-.+|.++++....  
T Consensus        26 ~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            345555443  5789999999999999999876654     6788999999999999999999999999887776654  


Q ss_pred             hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                         ++..|++||.+++..-...+=.+|.+|...++.
T Consensus        97 ---vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k  129 (556)
T PF05918_consen   97 ---VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK  129 (556)
T ss_dssp             ---HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH
T ss_pred             ---HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH
Confidence               456899999999988777777777777776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.37  E-value=8.5  Score=42.63  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=39.0

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280          107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      ||.|.++.+-..+|.+.=.+|   |+.|..    ..+.+|+++|.+  +..+|.-.+.+|+.++.-.
T Consensus       295 Ll~S~n~sVVmA~aql~y~lA---P~~~~~----~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~~  352 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHLA---PKNQVT----KIAKALVRLLRS--NREVQYVVLQNIATISIKR  352 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhhC---CHHHHH----HHHHHHHHHHhc--CCcchhhhHHHHHHHHhcc
Confidence            445666677666776666666   333332    237789999887  3568888888888887543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=86.07  E-value=4.6  Score=45.26  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=103.4

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHH-c-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-A-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~-~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      .+|.|++........+|..-..+|+++..|-|. |. ++. . ..+|.|++.|.- +|..+|..++..|.-++..++.-+
T Consensus       868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~v-llp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QV-LLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-Hh-hccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence            456677777777778999999999999998886 33 333 2 355667777665 688999999999999888776655


Q ss_pred             HHHHHcChHHHHHHhhcCCC---HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALGSES---VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG  249 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~d---~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~a  249 (392)
                      ..-+ .--++.+..+=.+.+   ..+|..|...+..|.+--|...-.-..-.+++.|...|.++.--+|+.|.++
T Consensus       945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            5432 224555555545544   7899999999999987555543333344567777777777777788877754

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=85.56  E-value=0.28  Score=51.13  Aligned_cols=60  Identities=20%  Similarity=0.150  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280          111 SHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI  170 (392)
Q Consensus       111 ~~~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv  170 (392)
                      ....|||.||.++||+..|-.. .|..=...-+++.|..++.+..+-.||..|..||+--.
T Consensus       542 ~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  542 AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            3567999999999999987553 55544455678899999888788899999999998643

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=85.51  E-value=23  Score=33.80  Aligned_cols=194  Identities=15%  Similarity=0.134  Sum_probs=109.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhCCcc------HHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHH
Q 016280           23 RSTRNLSEEDRRWFMEAMQSQTVD------VIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLH   96 (392)
Q Consensus        23 ~~~~~~s~E~~~~L~~Al~~~~~D------~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~   96 (392)
                      .+..+|++++.+.|.+.+......      ......-+..++..         -..+.+-=+||-++-++-....+..+.
T Consensus        31 ~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------Wp~~~~fP~lDLlRl~~l~~~~~~~~~  101 (268)
T PF08324_consen   31 QKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLS---------WPPESRFPALDLLRLAALHPPASDLLA  101 (268)
T ss_dssp             HCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC---------S-CCC-HHHHHHHHHHCCCHCHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHh---------CCCccchhHHhHHHHHHhCccHHHHHh
Confidence            345688999999999888875332      21222222333322         233556678888888887777666666


Q ss_pred             HcCC--hHHHHHhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-C-CHHHHHHhhCCCC---CHHHHHHHHHH
Q 016280           97 SIGG--LAPLLGYLK----NSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-N-GLEPLLSNFASDP---DVTVRTKALGA  165 (392)
Q Consensus        97 ~lGg--l~~Ll~lL~----s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g-~l~~Ll~LL~s~~---~~~vr~kAl~A  165 (392)
                      ..++  ...+..++.    +..+..+..++.+++|+..+.+ .+..++.. + .+...+..+....   +..+|..+...
T Consensus       102 ~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl  180 (268)
T PF08324_consen  102 SEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATL  180 (268)
T ss_dssp             STTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHH
Confidence            5542  344444443    2578899999999999998765 44445544 3 3444444434332   56677766665


Q ss_pred             HHHhhc---CCcc-cHHHHHHcChHHHHHHhhc-C-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          166 ISSLIR---HNKP-GIEAFRLANGYAALRDALG-S-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       166 LS~lvR---~~~~-~~~~f~~~gGl~~L~~lL~-s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +-|++.   .... ...   ...-+..+...+. . .+....-+++-++..|+..++...+.....|+-.
T Consensus       181 ~~Nlsv~~~~~~~~~~~---~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~  247 (268)
T PF08324_consen  181 LLNLSVLLHKNRSDEEW---QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKS  247 (268)
T ss_dssp             HHHHHHHHHHCTS-CCH---HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHH
T ss_pred             HHHHHHHHHhcCCChHH---HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHH
Confidence            555432   2221 000   1112344445332 2 5788999999999999965444343333344443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=85.37  E-value=11  Score=36.52  Aligned_cols=141  Identities=21%  Similarity=0.284  Sum_probs=84.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL  182 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~~  182 (392)
                      |=.+|.+++..+|.+|..+|+.+...-|.-   .+...-+..|+..+.+- .|...-.-++.++..+++........   
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~---   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES---   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence            446899999999999999999999876632   23333355555554321 24444455577888887554322222   


Q ss_pred             cChHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcC-CChHHHHHHHHHHHHHH
Q 016280          183 ANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASS-EDPDVREAALRGLLELA  254 (392)
Q Consensus       183 ~gGl~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~  254 (392)
                        +..++..+.+.     -....|..+-.++..|+....   ..+..+  +++..+++++.. .|+.-.-.+-+.+..+.
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~  152 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL  152 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence              33444444432     236777888888888886533   233333  466777777663 45655555554444443


Q ss_pred             c
Q 016280          255 R  255 (392)
Q Consensus       255 ~  255 (392)
                      +
T Consensus       153 ~  153 (262)
T PF14500_consen  153 Q  153 (262)
T ss_pred             H
Confidence            3

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.28  E-value=10  Score=40.69  Aligned_cols=130  Identities=12%  Similarity=0.060  Sum_probs=84.4

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280          106 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG  185 (392)
Q Consensus       106 ~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG  185 (392)
                      .+|.+.++-+|...+..++.+--..       -..|++..|+..--+|.+..||+.|+-||+-+|-..+         +.
T Consensus       523 ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~  586 (926)
T COG5116         523 ELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DL  586 (926)
T ss_pred             HHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------ch
Confidence            5667778888888777776542110       1235677788876677888999999999998765433         23


Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          186 YAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       186 l~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.-.+++|. |-+.-+|--.+++|.-.|.+.... .      .+..|-.|..+...=||..|.-+++-|...+.
T Consensus       587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n  653 (926)
T COG5116         587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-V------ATDILEALMYDTNDFVRQSAMIAVGMILMQCN  653 (926)
T ss_pred             hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-H------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence            344455554 456888888888888777653222 1      13344455566666677777777776655443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=85.25  E-value=3.7  Score=33.41  Aligned_cols=71  Identities=24%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          187 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       187 ~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      .....-+.++..-+|..++..|+.|+....  .....-.+++..+...|+++|.-+.-.|.++|..|+.-.+.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            344566778888899999999999997655  22333346777788889999999999999999999887764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.03  E-value=4.8  Score=40.03  Aligned_cols=106  Identities=12%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH--HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR--LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~--~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      .|+.++.+ .++.||..|+.-+.++...  + .+.|.  ..--++.|.+++...++  -+.|++++.++... ..-+..+
T Consensus         7 elv~ll~~-~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~l   79 (353)
T KOG2973|consen    7 ELVELLHS-LSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKL   79 (353)
T ss_pred             HHHHHhcc-CChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence            46666554 6789999999888888754  2 22222  23456667788776655  67889999999864 5556666


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+. +++.++..+..+...+-+....+|+|++++..
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~  114 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD  114 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence            666 88888888888877788888888888888775

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=85.00  E-value=3.9  Score=44.86  Aligned_cols=64  Identities=22%  Similarity=0.221  Sum_probs=32.6

Q ss_pred             cCChHHHHH-hhcCCCHHHHHHHHHHHHHH--hh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280           98 IGGLAPLLG-YLKNSHANIRAKAGEVVTTI--VQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR  171 (392)
Q Consensus        98 lGgl~~Ll~-lL~s~~~~IR~~Aa~vLg~i--aq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR  171 (392)
                      .+...+++. ++...++-+|......++-+  .. ||          +++..|+..--+|.+..||+.|+-||+=++-
T Consensus       517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----------kair~lLh~aVsD~nDDVrRaAVialGFVl~  584 (929)
T KOG2062|consen  517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLF  584 (929)
T ss_pred             hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----------hhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence            344555553 44555666666555444432  11 22          2344555554455555666666666665443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.99  E-value=7.1  Score=38.79  Aligned_cols=99  Identities=20%  Similarity=0.229  Sum_probs=70.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhh-C--CCCCHHHHHHHHHHHHHhhcCCccc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNF-A--SDPDVTVRTKALGAISSLIRHNKPG  176 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL-~--s~~~~~vr~kAl~ALS~lvR~~~~~  176 (392)
                      +-.+++-+++....|-..||.+++.+.++ |..+++      .+..++..| .  ...+..|+..|.-||-.++.+-.++
T Consensus       131 ii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~  204 (334)
T KOG2933|consen  131 IIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ  204 (334)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence            45566778889999999999999999996 444544      233333322 2  2345689999999999999775543


Q ss_pred             HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          177 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       177 ~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      .       .++.|..+++..+.+++.+++....+..
T Consensus       205 ~-------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  205 K-------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2       3556677788888999999987666554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=84.93  E-value=4  Score=43.70  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=76.7

Q ss_pred             CChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280           99 GGLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus        99 Ggl~~Ll~l-L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      |.+..++.+ .+..+.+||..|..+||-++-..+         +.++..+++|....+..||.-...||+-.|.+.-.  
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--  619 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--  619 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--
Confidence            344445554 455789999999999998875443         56777888887767889999999999988876431  


Q ss_pred             HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280          178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN  215 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~  215 (392)
                           .-.+.+|-.++...+.-+|.-|+-+++.++.+.
T Consensus       620 -----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~  652 (926)
T COG5116         620 -----KVATDILEALMYDTNDFVRQSAMIAVGMILMQC  652 (926)
T ss_pred             -----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence                 125667888888888999999999999887553

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=84.77  E-value=17  Score=39.68  Aligned_cols=183  Identities=17%  Similarity=0.162  Sum_probs=97.8

Q ss_pred             ccHHHHHHHHHHHhcCcHH----hhhh-------CCCCHHHHHHHHHHHHHhhcCCCChHHHHHcC----ChHHHHHhhc
Q 016280           45 VDVIKRMKEITLVMQTPEQ----VLES-------QGVTPQDIEDMLDELQEHVESIDMANDLHSIG----GLAPLLGYLK  109 (392)
Q Consensus        45 ~D~~~~mk~~~~~l~~~~~----~l~~-------~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lG----gl~~Ll~lL~  109 (392)
                      +|++...++++.++++...    .++.       ..-.++.+--|||.|+.++-..-....|++.-    -+..++..++
T Consensus       520 ~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~  599 (745)
T KOG0301|consen  520 PDEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN  599 (745)
T ss_pred             cchhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc
Confidence            5666666666666654320    0000       00123445678999999998887777777632    2333444444


Q ss_pred             CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh---CCCCCHHHHHHHHHHHHHhhcCCcccHHH-HHHcCh
Q 016280          110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF---ASDPDVTVRTKALGAISSLIRHNKPGIEA-FRLANG  185 (392)
Q Consensus       110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL---~s~~~~~vr~kAl~ALS~lvR~~~~~~~~-f~~~gG  185 (392)
                       .++..+..++.+|.|+..| |.-++.+...  +..++..+   .+.++..++.    |++.++-+......+ -.+.+|
T Consensus       600 -~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~i----a~atlaln~sv~l~~~~~~~~~  671 (745)
T KOG0301|consen  600 -ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQI----ALATLALNYSVLLIQDNEQLEG  671 (745)
T ss_pred             -cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHH----HHHHHHHHHHHHHHhcccccch
Confidence             5577888999999999987 7777766654  33333322   2222223322    222222221111100 112677


Q ss_pred             HHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc
Q 016280          186 YAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  236 (392)
Q Consensus       186 l~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~  236 (392)
                      .+.|..++..     ++..-.-+.+.+|..|+..+...++ +.+.--+..++.-++
T Consensus       672 ~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~A~~~~v~sia~~~~  726 (745)
T KOG0301|consen  672 KEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-LAKNRSVDSIAKKLK  726 (745)
T ss_pred             HHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-HHHhcCHHHHHHHHH
Confidence            7777766653     2344556677788888875433333 333333455554444

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.77  E-value=27  Score=36.86  Aligned_cols=120  Identities=19%  Similarity=0.224  Sum_probs=78.3

Q ss_pred             hHHHHHcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHH
Q 016280           92 ANDLHSIGGLAPLLGYL----KNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAI  166 (392)
Q Consensus        92 A~d~~~lGgl~~Ll~lL----~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~AL  166 (392)
                      -+.+-+.|.+..++..|    .++++.+|..|+.+||+.+.-.| +++..  ..-.+..++.-|..+.+.+|.-.|+.+|
T Consensus       247 ~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~L  324 (533)
T KOG2032|consen  247 PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCL  324 (533)
T ss_pred             cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            33344677777666544    35788999999999999999855 33332  1223445555555555678888887777


Q ss_pred             HHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280          167 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       167 S~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~  213 (392)
                      -+++---..-.-.++-.+..--+..++.+.++++|..|-.++..|..
T Consensus       325 t~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  325 TMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK  371 (533)
T ss_pred             HHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence            77653211111122233444457788889999999999999998874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=84.73  E-value=9.1  Score=44.23  Aligned_cols=133  Identities=14%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhcCCCChHHHH-----------------HcCChHHHH----HhhcC-CCHHHHHHHHHHHHHHhhCCHHH
Q 016280           76 EDMLDELQEHVESIDMANDLH-----------------SIGGLAPLL----GYLKN-SHANIRAKAGEVVTTIVQNNPRS  133 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~-----------------~lGgl~~Ll----~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~  133 (392)
                      -.+++--..++++.+.+.+|.                 +..|.-.++    .++++ .....|..|..+|..++++-.  
T Consensus       378 ~~al~~~r~~~~~l~~~~dl~~~~q~~~~~~~~~~~~~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~--  455 (1431)
T KOG1240|consen  378 SKALEFSRHLIENLDVIQDLKPEKQLWTARSSPNIKDPKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYID--  455 (1431)
T ss_pred             HHHHhhhhhhcccchhhhccchHHhcccccCCcccCCccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc--
Confidence            345554446777777666662                 222333333    44444 355678889999999998632  


Q ss_pred             HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH---hhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHH
Q 016280          134 QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS---LIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQ  209 (392)
Q Consensus       134 Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~---lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs  209 (392)
                      -+..++ -++|.++.++.. +...||..|+-+|.-   ++|..++.-..+...=-+|-|.+++.+ ....+|..-+.-|.
T Consensus       456 de~~LD-RVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla  533 (1431)
T KOG1240|consen  456 DEVKLD-RVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLA  533 (1431)
T ss_pred             hHHHHh-hhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHH
Confidence            122223 478888888664 678999999998886   466666554444445578888888887 55666665555565


Q ss_pred             HHh
Q 016280          210 YLL  212 (392)
Q Consensus       210 ~L~  212 (392)
                      .|+
T Consensus       534 ~LA  536 (1431)
T KOG1240|consen  534 QLA  536 (1431)
T ss_pred             HHH
Confidence            554

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=84.56  E-value=4.7  Score=35.33  Aligned_cols=73  Identities=22%  Similarity=0.196  Sum_probs=56.6

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH-HHHhhCCC--CCHHHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFASD--PDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~-Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~  173 (392)
                      +..|-+=|. +.++.+...|..+|-+|++|. +.++..|.....+.. |+.++...  .+..|+.+.+..|-+-...+
T Consensus        40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            445555455 468999999999999999997 578888888888987 89988632  35689999988887766544

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=83.98  E-value=7.7  Score=35.91  Aligned_cols=127  Identities=12%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc----------------CCHHHHHHhhCCCCC-----HHHHHHHHHHH
Q 016280          108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----------------NGLEPLLSNFASDPD-----VTVRTKALGAI  166 (392)
Q Consensus       108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~----------------g~l~~Ll~LL~s~~~-----~~vr~kAl~AL  166 (392)
                      +..+....--.+|.+|+|++....-+.. +++.                ..+..|+.++..+.+     ..---...+.+
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            3344455666788888888886655542 3322                357788888766211     22334667888


Q ss_pred             HHhhcCCcccHHHHHHcC--h--HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhc
Q 016280          167 SSLIRHNKPGIEAFRLAN--G--YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLAS  236 (392)
Q Consensus       167 S~lvR~~~~~~~~f~~~g--G--l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G~v~~Lv~LL~  236 (392)
                      +|+.+. +.+.+.|+...  .  +..|..++.+.+.--|.-++.+|.++|-+.......+-+  .++++.|+--|.
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            998864 67788887542  3  556777777776666777888999999775555443332  356666655444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=83.61  E-value=19  Score=29.87  Aligned_cols=69  Identities=22%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHh-----hCCCCCHHHHHHHHHHHHHh
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSN-----FASDPDVTVRTKALGAISSL  169 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~L-----L~s~~~~~vr~kAl~ALS~l  169 (392)
                      +..|..-|.+.++.+.-.|..+|=.+++|. +.++..+.....+..++..     ...+.+..||.++++.+...
T Consensus        39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w  113 (115)
T cd00197          39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW  113 (115)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence            555666778889999999999999999995 5788878777666666553     22345789999999877653

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=83.60  E-value=16  Score=40.33  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHH
Q 016280          110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL  189 (392)
Q Consensus       110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L  189 (392)
                      ..+.+||+.|..+||-++-..|.         .++..+++|...-++.||.-|..||+=.|-+.- ...      ++.+|
T Consensus       566 D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e------Ai~lL  629 (929)
T KOG2062|consen  566 DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE------AINLL  629 (929)
T ss_pred             ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH------HHHHH
Confidence            35667777777777766655552         356667776666667777777777776665532 111      34455


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHh
Q 016280          190 RDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       190 ~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      -.+...+..-||.-|+-+++-+.
T Consensus       630 epl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  630 EPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             hhhhcChHHHHHHHHHHHHHHHH
Confidence            55555555566666666655554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.48  E-value=7.7  Score=42.51  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=106.3

Q ss_pred             cCChHHHHH-hhcC----CCHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280           98 IGGLAPLLG-YLKN----SHANIRAKAGEVVTTIV-QNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR  171 (392)
Q Consensus        98 lGgl~~Ll~-lL~s----~~~~IR~~Aa~vLg~ia-qNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR  171 (392)
                      +|-+.|++. ...+    +++.++..|.-++..+. -.+..|-+      -+|.|+..+...+++.+|.+|+-+++-+.-
T Consensus       890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e------hlpllIt~mek~p~P~IR~NaVvglgD~~v  963 (1128)
T COG5098         890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE------HLPLLITSMEKHPIPRIRANAVVGLGDFLV  963 (1128)
T ss_pred             HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhhCCCcceeccceeeccccce
Confidence            456777775 4433    68899999888887643 34444433      388899998877899999999999887654


Q ss_pred             CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 016280          172 HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL  251 (392)
Q Consensus       172 ~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~  251 (392)
                      -+..    |++. --..|.+-|...+..||+.+...+.+|+-.+     .+.--|-.+.++.+|.++|..+.+.|=..+.
T Consensus       964 cfN~----~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft 1033 (1128)
T COG5098         964 CFNT----TADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFT 1033 (1128)
T ss_pred             ehhh----hhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHH
Confidence            3322    2222 2345677788889999999999999988643     2333478888999999999999999988888


Q ss_pred             HHHcCCC
Q 016280          252 ELAREKA  258 (392)
Q Consensus       252 ~L~~~~~  258 (392)
                      .++....
T Consensus      1034 ~~a~KdN 1040 (1128)
T COG5098        1034 QIAKKDN 1040 (1128)
T ss_pred             HHHhccc
Confidence            8877655

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.34  E-value=8.1  Score=42.60  Aligned_cols=156  Identities=16%  Similarity=0.150  Sum_probs=101.3

Q ss_pred             HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHH---HHH
Q 016280           93 NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGA---ISS  168 (392)
Q Consensus        93 ~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~A---LS~  168 (392)
                      ..+++.-+++-+-.++...++-+|..|+.++.++.-..-..-..+.++ ..++....++.. .+......+..+   |.+
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~s  656 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITS  656 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhh
Confidence            336766666666667788999999999999999998766555566664 455444444333 344455554444   445


Q ss_pred             hhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280          169 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR  248 (392)
Q Consensus       169 lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~  248 (392)
                      ++.++...  ......+...++.++.+.+..+|-+.+.-+.++..........+.+....+.+..+-.......++.+..
T Consensus       657 v~~n~c~~--~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~  734 (748)
T KOG4151|consen  657 VVENHCSR--ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAP  734 (748)
T ss_pred             cchhhhhh--HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhh
Confidence            55555443  3335789999999999999999999998888866544444455555555555544433344445555544


Q ss_pred             HHH
Q 016280          249 GLL  251 (392)
Q Consensus       249 aL~  251 (392)
                      .|.
T Consensus       735 ~l~  737 (748)
T KOG4151|consen  735 CLS  737 (748)
T ss_pred             HHH
Confidence            443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.25  E-value=4.3  Score=44.61  Aligned_cols=139  Identities=14%  Similarity=0.198  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCC
Q 016280          118 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSE  196 (392)
Q Consensus       118 ~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~  196 (392)
                      .+...+.+++.-+...++.+++.-+++.+-.++. +.++-.++.++..+.||.-+.---...|.. ..|++....++...
T Consensus       561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~  639 (748)
T KOG4151|consen  561 EALEALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA  639 (748)
T ss_pred             HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence            4455566788877777777888777766444433 357889999999999999765433344444 57888888888888


Q ss_pred             CHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          197 SVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       197 d~kl~~kA~~lLs~L~~~~~~~~~-~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +.++...++..+..++......+. ...-..+...++.++.+++..+|...+..++++....
T Consensus       640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~  701 (748)
T KOG4151|consen  640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL  701 (748)
T ss_pred             hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence            899999888888877766666665 3444477888899999999999999998888855444

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=83.18  E-value=19  Score=33.03  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=79.7

Q ss_pred             ChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC----C---------------HHHHHHhhCCCCCHHHH
Q 016280          100 GLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN----G---------------LEPLLSNFASDPDVTVR  159 (392)
Q Consensus       100 gl~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g----~---------------l~~Ll~LL~s~~~~~vr  159 (392)
                      .-+.|+. ++..+++.+|..|+.+++.+-.+....=...-+..    .               -..|+..|..+.+..+.
T Consensus        40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l  119 (182)
T PF13251_consen   40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL  119 (182)
T ss_pred             CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            4455665 45778999999999999999887432222222222    1               13466667777788888


Q ss_pred             HHHHHHHHHhhcCCcccHHH-HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 016280          160 TKALGAISSLIRHNKPGIEA-FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA  216 (392)
Q Consensus       160 ~kAl~ALS~lvR~~~~~~~~-f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~  216 (392)
                      ...+-+++.++.+.|...-. -+...-+..+..++.+.|..++.-++.++..|+.-.+
T Consensus       120 ~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  120 TQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            99999999999887654311 1122334556666777899999999999998886543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.65  E-value=19  Score=37.97  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             HcCCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          139 EANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR-DALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       139 ~~g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      +.|.+..++..+.   .+++..+|.-|+..|.++..+.|.....-.. --+..++ .+....+..|.-.|..+|..++..
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            4566666554443   4567788888888888888775443322222 2333344 444455678888888877777632


Q ss_pred             CCcchHHHHhcCch---HHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          215 NASDCSVVDKLGFP---RLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       215 ~~~~~~~l~~~G~v---~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                       ..+.  -+..+++   -++..++.+.+.++|..+..+++.|+.
T Consensus       331 -~~~~--~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  331 -ASND--DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK  371 (533)
T ss_pred             -hhhc--chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence             1111  1222333   456667789999999998888777754

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=82.64  E-value=3.6  Score=46.10  Aligned_cols=105  Identities=21%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC---HHHHHHHHHHHHHhhcCCcccH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD---VTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~---~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      +|.|++.|.-++..+|..+..+|.....-.+..+..-+. -.+|.|+.+ .++.+   ..||.-|+.++..+.|--|...
T Consensus       911 lPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~  988 (1030)
T KOG1967|consen  911 LPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTKS  988 (1030)
T ss_pred             HHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence            566678888899999999999999988877777664433 367888876 54444   6899999999999999555443


Q ss_pred             HHHHHcChHHHHHHhhcCCCHHHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALGSESVKFQRKALNL  207 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~l  207 (392)
                      -.-.....+..|...|.++...+|..|...
T Consensus       989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  989 LLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             cccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            333356678889999988888888877654

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=82.50  E-value=93  Score=35.20  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL  182 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~  182 (392)
                      +...+.+++-.-|..|+.-+-....+.. ..++  -..|.+-.++.....|.+..|...|+..|..|+.........| .
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~--~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~  334 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVK--GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-A  334 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhcccccccc--CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-H
Confidence            4445667777788888888877777655 1222  1235567777877788888899999999999988877664444 5


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      .+.++.|...+......++.-+..++-..+...+       -..+.+.++..+++..+.++..+...+.........
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            6778888888887777777666666655554221       124567888899999999999999998888776653

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=82.46  E-value=23  Score=38.79  Aligned_cols=138  Identities=12%  Similarity=0.031  Sum_probs=89.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH
Q 016280          108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA  187 (392)
Q Consensus       108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~  187 (392)
                      |.-.+.+.|..=..-|.....+   .=+.|...-.++.|+..+.-........-.++.+.-....-+      +..+-++
T Consensus       263 l~lks~~eK~~Ff~~L~~~l~~---~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p  333 (690)
T KOG1243|consen  263 LRLKSVEEKQKFFSGLIDRLDN---FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE------YQVRIIP  333 (690)
T ss_pred             cccCcHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc------cccchhh
Confidence            3445566665555555553333   335577777888888776654312222333444444333222      4677899


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          188 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       188 ~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +|++++.+.|..+|..   ||.|+-.--.......++.-+++++...+.+.++.+||+++..+..|+..-
T Consensus       334 ~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL  400 (690)
T KOG1243|consen  334 VLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL  400 (690)
T ss_pred             hHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999888874   555554332333445677789999999999999999999999888887643

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=82.44  E-value=6.7  Score=33.00  Aligned_cols=67  Identities=27%  Similarity=0.323  Sum_probs=46.8

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC-HHHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD-VTVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~-~~vr~kAl~ALS~lvR~~  173 (392)
                      +|.+...|. +..++.|..+..+++.++...+-..+ +     +..|++.+..... ....+.++-+|..++.+.
T Consensus         8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~-----l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-V-----LNALMESILKNWTQETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-H-----HHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence            577778887 78899999999999999987764433 3     3344443332222 222588999999999765

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.98  E-value=7.4  Score=44.74  Aligned_cols=116  Identities=18%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHHc-C-CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQ---NNPRSQQLVMEA-N-GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~-g-~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      +..++.+|.+.+-.+|..-..++|+++-   +++..-...-+. + .+..|..-+ .|.+.-||.|++.-...+++.+..
T Consensus       314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl-~Dvsa~vRskVLqv~~~l~~~~s~  392 (1251)
T KOG0414|consen  314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERL-LDVSAYVRSKVLQVFRRLFQQHSI  392 (1251)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHccCC
Confidence            4456677888888999999999999874   222211111111 1 233344332 346789999999999999987643


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC  219 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~  219 (392)
                      ....+  ...+...++-|.+++.-||++|..+++.++..+|...
T Consensus       393 p~~~~--~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~  434 (1251)
T KOG0414|consen  393 PLGSR--TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSS  434 (1251)
T ss_pred             CccHH--HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchh
Confidence            33222  3345666777888999999999999999998888654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=81.31  E-value=12  Score=40.89  Aligned_cols=170  Identities=14%  Similarity=0.157  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH--ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~--~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      +.+++..-+.-|.+.+++  .-.+++....++.|+..+...+  ..+...... +|....--+      .+.+.+|.|++
T Consensus       267 s~~eK~~Ff~~L~~~l~~--~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k-~~k~ld~~e------yq~~i~p~l~k  337 (690)
T KOG1243|consen  267 SVEEKQKFFSGLIDRLDN--FPEEIIASKVLPILLAALEFGDAASDFLTPLFK-LGKDLDEEE------YQVRIIPVLLK  337 (690)
T ss_pred             cHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhccccchhhhhHHHH-hhhhccccc------cccchhhhHHH
Confidence            456666666655553332  2578888888888887776554  223322222 222222212      34467899999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      ++.. .|..+|...|.-|=..+++-.   +..+..-.++.+...+.+++.-+|..++-.+..|+.-  -... ......+
T Consensus       338 LF~~-~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k--L~~~-~Ln~Ell  410 (690)
T KOG1243|consen  338 LFKS-PDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK--LSKR-NLNGELL  410 (690)
T ss_pred             HhcC-cchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh--hchh-hhcHHHH
Confidence            9887 588999998888888887654   3555777899999999999999999999998888742  1111 2223344


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      +.+..+-.+++..+|....-+|+.++.+
T Consensus       411 r~~ar~q~d~~~~irtntticlgki~~~  438 (690)
T KOG1243|consen  411 RYLARLQPDEHGGIRTNTTICLGKIAPH  438 (690)
T ss_pred             HHHHhhCccccCcccccceeeecccccc
Confidence            5555554444445555444444444433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=81.24  E-value=6.4  Score=42.23  Aligned_cols=94  Identities=22%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHc-CCh----------HHHHHh-hc---CCCHHHHHHHHHHHHHHhhC--CHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSI-GGL----------APLLGY-LK---NSHANIRAKAGEVVTTIVQN--NPRS  133 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l-Ggl----------~~Ll~l-L~---s~~~~IR~~Aa~vLg~iaqN--Np~~  133 (392)
                      .|+.+|+||++|.+++|+-+.-.-.+.+ |.+          ...++. ++   =.+.-||..|..+|+..+-|  .+.+
T Consensus       444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~  523 (898)
T COG5240         444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS  523 (898)
T ss_pred             CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence            6788999999999999987764433321 111          001111 11   13667999999999888765  4455


Q ss_pred             HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280          134 QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI  170 (392)
Q Consensus       134 Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv  170 (392)
                      ++.|      ..++.-..+|.|.+||-.|.+++-++=
T Consensus       524 ~~sv------~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         524 PQSV------ENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHH------HHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            5543      334444455688999999999999873

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=80.81  E-value=25  Score=35.83  Aligned_cols=131  Identities=15%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCcc------------cH
Q 016280          113 ANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKP------------GI  177 (392)
Q Consensus       113 ~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~~------------~~  177 (392)
                      ..-|..|+..|-.++.+.+. +...+.  +.+..++.-..++  .+..-+-.|++.+++++-....            ..
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            34688999999999876442 222222  2355555433333  2345666789999988643311            24


Q ss_pred             HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL  250 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL  250 (392)
                      ..|....-++-|. --.+..+-+|.+|+..+..+-..-  ..+.+  .++++.++.+|.+++.-|+..|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l--~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL--PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            6666666666665 222456889999999999887542  23333  35899999999999999999998765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.73  E-value=6.8  Score=41.18  Aligned_cols=68  Identities=21%  Similarity=0.211  Sum_probs=57.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISS  168 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~  168 (392)
                      +..|-+-|.+.++.++..|..+|-+|+.|+- .+...|.+.+.+.-+|.+.... .+..||.|++..|=.
T Consensus        40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~  109 (470)
T KOG1087|consen   40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT  109 (470)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence            4455567778788999999999999999965 6666788999999999999887 788999999887754

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=80.60  E-value=21  Score=38.64  Aligned_cols=127  Identities=19%  Similarity=0.196  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      -++.+...+-.+-++.-+-|-- .+|+. |-+..+++.+.+++..||.+.+.+|+.++.+--++-+ ++-.|.+.+|..-
T Consensus        63 i~dRil~fl~~f~~Y~~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R  140 (885)
T COG5218          63 IPDRILSFLKRFFEYDMPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSER  140 (885)
T ss_pred             cHHHHHHHHHHHHHhcCCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHH
Confidence            3455555555555544343433 44443 5567777888899999999999999999877555544 5556777777765


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKAL  205 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~  205 (392)
                      +-. -.+.||..|+.+|+-+- +-....+-++    ...|+.+++. ++..+|+-|+
T Consensus       141 ~~D-RE~~VR~eAv~~L~~~Q-e~~~neen~~----~n~l~~~vqnDPS~EVRr~al  191 (885)
T COG5218         141 LFD-REKAVRREAVKVLCYYQ-EMELNEENRI----VNLLKDIVQNDPSDEVRRLAL  191 (885)
T ss_pred             Hhc-chHHHHHHHHHHHHHHH-hccCChHHHH----HHHHHHHHhcCcHHHHHHHHH
Confidence            332 35789999999998764 2223333332    2255555554 4567776554

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=80.02  E-value=6.2  Score=36.45  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             HHHHHcCChHHHHHhhcCC---C---------------HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280           93 NDLHSIGGLAPLLGYLKNS---H---------------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP  154 (392)
Q Consensus        93 ~d~~~lGgl~~Ll~lL~s~---~---------------~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~  154 (392)
                      +-|-.+|....++.+|..+   .               ..+-..+..+|...+.+|++.|..+.++  ++-++..+... 
T Consensus        37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-  113 (207)
T PF01365_consen   37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-  113 (207)
T ss_dssp             HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-
Confidence            3444566666666665431   1               4677899999999999999999988876  44333333221 


Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      ....-.-++.++.++.++|+.....+.+.. +..++.++....  -+.+-+.+|+.|+..
T Consensus       114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~  170 (207)
T PF01365_consen  114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC  170 (207)
T ss_dssp             CH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred             hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence            122224567888999999998888876555 888888876632  334566667777753

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
1xqs_A	280	Crystal Structure Of The Hspbp1 Core Domain Complex		5e-10
1xqr_A	296	Crystal Structure Of The Hspbp1 Core Domain Length		9e-09

>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 280

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 68  QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTI 126
           Q    Q+ E  L+ L +  E++D A D   + G+  L+G YL+   A +R +A +++ T 
Sbjct: 34  QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC 93
Query: 127 VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186
            QN    Q+ V+    L  LL     D   TVR KAL AIS L+R  + G+  F   +G+
Sbjct: 94  SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 153
Query: 187 AALRDALGSESVKFQRKALNLIQYLL 212
           + L  A+  +  K + K+  L+Q LL
Sbjct: 154 SVLMRAMQQQVQKLKVKSAFLLQNLL 179

>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Length = 296

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Query: 68  QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTI 126
           Q    Q+ E  L+ L +  E+ D A D   + G   L+G YL+   A +R +A +++ T 
Sbjct: 50  QAADQQEREGALELLADLCENXDNAADFCQLSGXHLLVGRYLEAGAAGLRWRAAQLIGTC 109
Query: 127 VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186
            QN    Q+ V+    L  LL     D   TVR KAL AIS L+R  + G+  F   +G+
Sbjct: 110 SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169
Query: 187 AALRDALGSESVKFQRKALNLIQYLL 212
           + L  A   +  K + K+  L+Q LL
Sbjct: 170 SVLXRAXQQQVQKLKVKSAFLLQNLL 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-68
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	9e-13
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	4e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-06
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-05
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	6e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	2e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	8e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-04

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  215 bits (549), Expect = 9e-68
 Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 10/273 (3%)

Query: 46  DVIKRMKEITLVMQTPEQVLE---SQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLA 102
             +++MK    V+  P         Q    Q+ E  L+ L +  E++D A D   + G+ 
Sbjct: 25  GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMH 84

Query: 103 PLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK 161
            L+G YL+   A +R +A +++ T  QN    Q+ V+    L  LL     D   TVR K
Sbjct: 85  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 144

Query: 162 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 221
           AL AIS L+R  + G+  F   +G++ L  A+  +  K + K+  L+Q LL  +      
Sbjct: 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 204

Query: 222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIK 281
           +  +G  + ++ L  +E     E  L  L  L  +   G      E    L++LL  R +
Sbjct: 205 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE-CREPELGLEELLRHRCQ 263

Query: 282 GISLMSPEDLGAAREERHLVDSLWNACYNEPSS 314
            +     +     +EE    + L   C++ P+ 
Sbjct: 264 LL-----QQHEEYQEELEFCEKLLQTCFSSPAD 291

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 1/156 (0%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G L  L+  L + +  I  +A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 96  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 154

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 155 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
              V + G    +  L S E+  +++ A   L +L 
Sbjct: 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 4/180 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G L  L+  L + +  I  +A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 112

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

Query: 219 CS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS-AIKLAEDNEKLKQLL 276
              V+D    P L+  L SS +  + + AL  L  +A    +   A+K A   EKL+QL 
Sbjct: 173 IQAVIDAGALPALV-QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 133 SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192
           S       + L  +     SD D+  +  A    S ++      I+A   A    AL   
Sbjct: 4   SHHHHHHGSELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62

Query: 193 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252
           L S + +  ++AL  +  + +        V   G    ++ L SS +  + + AL  L  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 253 LA 254
           +A
Sbjct: 123 IA 124

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 77.6 bits (191), Expect = 7e-16
 Identities = 33/156 (21%), Positives = 61/156 (39%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G +   +  L +   +++ +A   +  I  ++   +  V++ N L PLL  F+    +T+
Sbjct: 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM 166

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
              A+ A+S+L R   P  E  +++     L   L          A   + YL +     
Sbjct: 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
              V   G  R ++ L    D  V   ALR +  + 
Sbjct: 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
             L  LL  L +   +I+ +A   ++ I   N    Q V++AN    L+ +     +   
Sbjct: 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI-SILQTAEFRT 334

Query: 159 RTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217
           R +A  AI++         I+          L D L     K  + ALN ++ +L     
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394

Query: 218 D-----------CSVVDKLGFPRLMLHLASSEDPDVREAALR 248
           +           C+++++      +  L S E+ ++ + A  
Sbjct: 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 2/157 (1%)

Query: 99  GGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT 157
             L PLL      +   +   A   ++ + +      +    +  L  +LS      D  
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL-NVLSWLLFVSDTD 207

Query: 158 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217
           V   A  A+S L       I+A   A     L + L     K    AL  +  ++  +  
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267

Query: 218 DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
              V+      + +LHL SS    +++ A   +  + 
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 1/156 (0%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G L  L+  L + +  I  +A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 112

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
              V + G    +  L S E+  +++ A   L +L 
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 2/179 (1%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
             L  ++  L +        A   ++ I        Q V++A  L  L+    S P+  +
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV-QLLSSPNEQI 70

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
             +AL A+S++       I+A   A    AL   L S + +  ++AL  +  + +     
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD-GSAIKLAEDNEKLKQLL 276
              V   G    ++ L SS +  + + AL  L  +A    +   A+K A   EKL+QL 
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 133 SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192
           S       + L  ++    S PD      AL  +S +       I+A   A    AL   
Sbjct: 4   SHHHHHHGSELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 193 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252
           L S + +  ++AL  +  + +        V   G    ++ L SS +  + + AL  L  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 253 LA 254
           +A
Sbjct: 123 IA 124

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G L  L+  L + +  I  +A   ++ I       +Q V EA  LE L     S  +  +
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE-QLQSHENEKI 196

Query: 159 RTKALGAISSLIRH 172
           + +A  A+  L  H
Sbjct: 197 QKEAQEALEKLQSH 210

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 66.7 bits (162), Expect = 9e-13
 Identities = 43/265 (16%), Positives = 91/265 (34%), Gaps = 11/265 (4%)

Query: 19  SDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDM 78
            +  +  R   E+  +      Q+ T + I +++ +         + +      +     
Sbjct: 7   DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66

Query: 79  LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ--L 136
           LD L    ++   +   +S   L         ++     K  E+   IV+    ++    
Sbjct: 67  LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126

Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
             E +   P L     +    +RT     ++ L     P      L +        L S+
Sbjct: 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-------LKSK 179

Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 256
           + + + + L +I+Y +       S +  L   + +      +D +VR AA+  L+   + 
Sbjct: 180 NARQRSECLLVIEYYITNAGI--SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237

Query: 257 KADGSAIKLAEDNEKLKQLLGERIK 281
           + D          +K K L+ ERIK
Sbjct: 238 EGDQMWKAAGRMADKDKSLVEERIK 262

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-FASDPDVT 157
           G L  L+  L +   N+   A  +++ +  NN +++ +V +  G+E L+     +     
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 158 VRTKALGAISSLIRHN---KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214
           +   A+ A+  L   +   +    A RL  G   +   L   S     KA   +   L  
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 215 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
             ++ + + + G    ++ L      D +     G  +  
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 21/165 (12%), Positives = 60/165 (36%), Gaps = 1/165 (0%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L+  L +   ++   A   +  ++ +   ++  V  A GL+ ++    +  +V  
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV-ALLNKTNVKF 159

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
                  +  L   N+        + G  AL + + + + +      + +  +L+  +S+
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAI 263
              + + G  + +    +     + +  L  L  L+        +
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM 264

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GGL  ++  L  ++    A   + +  +   N  S+ +++ + G + L++   +     +
Sbjct: 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 202

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
                  +  L         A   A G  AL   L   S +  +  L  ++ L +     
Sbjct: 203 LWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK- 260

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
                +     L + L  S+D +V   A   L  L 
Sbjct: 261 -QEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLT 294

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 2/182 (1%)

Query: 97  SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV 156
           S   ++ ++  ++N++    A+        + ++      + ++ G+  L+      P  
Sbjct: 57  SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV-KMLGSPVD 115

Query: 157 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 216
           +V   A+  + +L+ H +    A RLA G   +   L   +VKF     + +Q L   N 
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 217 SDCSVVDKLG-FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQL 275
               ++   G    L+  + +     +     R L  L+   ++  AI  A   + L   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 276 LG 277
           L 
Sbjct: 236 LT 237

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 10/184 (5%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L  +L +    +       +  +        +       L  L+       D+ V
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLV-QLLGSDDINV 282

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENA 216
            T A G +S+L  +N           G  AL   +    +       A+  +++L + + 
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 217 SDC----SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKL 272
                  +V    G P ++  L       + +A +  +  LA   A+ + ++      +L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402

Query: 273 KQLL 276
            QLL
Sbjct: 403 VQLL 406

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
            +    +  L     +D D  V  KA   +  L +         R     +A+   + + 
Sbjct: 13  ELATRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71

Query: 197 S-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
           + V+  R     +  L +      ++    G P L + +  S    V   A+  L  L  
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL-VKMLGSPVDSVLFYAITTLHNLLL 130

Query: 256 EKAD 259
            +  
Sbjct: 131 HQEG 134

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 23/183 (12%)

Query: 93  NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL------ 146
           N +    GL  ++  L         KA   +   +   P +   + E   +  L      
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 147 ---------------LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 191
                                     +     GA+  L R         R  N       
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQ 467

Query: 192 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL 251
            L S     QR A  ++  L  ++      ++  G    +  L  S +  V   A   L 
Sbjct: 468 LLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 252 ELA 254
            ++
Sbjct: 527 RMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 71  TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN 130
             + +E     L      +     +  +  +   +  L +   NI+  A  V+  + Q+ 
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 490

Query: 131 PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 169
             + + +       PL        +  V T A   +  +
Sbjct: 491 KEAAEAIEAEGATAPLT-ELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 165 AISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK 224
           A+ +LI +     +A         L   L  E      KA  ++  L  + AS  +++  
Sbjct: 1   AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 225 LGF-PRLMLHLASSEDPDVREAALRGLLELAREK 257
                 ++  + ++ D +        L  L+  +
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 7/173 (4%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G +  L+  L  +   I   A   +  IV       Q V++A  L  +  +  ++P   +
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AVFPSLLTNPKTNI 332

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI-QYLLNENAS 217
           + +A   +S++    +  I+          L   L     K Q++A   I  Y       
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392

Query: 218 DCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNE 270
               +   G    +++L S++D  + +  L  +  + +     +A KL E  +
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ-----AAEKLGETEK 440

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 4/173 (2%)

Query: 86  VESIDMANDLHSIGGLAPLLGYLKNSHAN-IRAKAGEVVTTIVQNNPRS---QQLVMEAN 141
            +     + +   G + PLL  L     + +       +T  + N  R+      +    
Sbjct: 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 231

Query: 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ 201
            + P L       D  V   +  AIS L       IE          L   LG+  +   
Sbjct: 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 291

Query: 202 RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
             AL  I  ++         V   G   +   L ++   ++++ A   +  + 
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G LA     L N   NI+ +A   ++ I        Q V+    +  L+   +   D   
Sbjct: 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKT 374

Query: 159 RTKALGAISSLIRHNKP-GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN---- 213
           + +A  AI++         I           L + L ++  K  +  L+ I  +      
Sbjct: 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434

Query: 214 --ENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 248
             E      ++++ G    +  L   E+  V +A+L 
Sbjct: 435 LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 471

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           G +  L+G L  +    + +A   +T         Q + +   G+   L N  S  D  +
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417

Query: 159 RTKALGAISSLIR------HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI-QYL 211
               L AIS++ +        +          G   +      E+    + +LNLI +Y 
Sbjct: 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

Query: 212 LNENASDCSVVD 223
             E   D +VV 
Sbjct: 478 SVEEEEDQNVVP 489

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
             + P+LG   ++  ++   A   ++ + +         + +  L P L+      D   
Sbjct: 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL-PTLAKLIYSMDTET 273

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
              A  AIS L    +  I+A         L + L  ES   Q  AL  +  ++  N   
Sbjct: 274 LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ 333

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
             VV   G    +  L SS   ++++ A   +  +  
Sbjct: 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 65.8 bits (160), Expect = 8e-12
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 4/180 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
                L+  L +    ++  A   V  IV  N    Q+V+ A  L P L    S P   +
Sbjct: 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL-PALRLLLSSPKENI 357

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
           + +A   IS++   N   I+A   AN    L   L     K +++A   I    +     
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 417

Query: 219 CSVVDKL---GFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQL 275
             ++  L   G  + +  L    D  + E  L  L  + +        +    NE    +
Sbjct: 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 30/235 (12%), Positives = 75/235 (31%), Gaps = 11/235 (4%)

Query: 26  RNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQE- 84
           RN          +     +V   ++     L  + P+     Q +   D+++ L    + 
Sbjct: 56  RNFIPPTDGADSDEEDESSVSADQQF-YSQLQQELPQMT---QQLNSDDMQEQLSATVKF 111

Query: 85  ----HVESIDMANDLHSIGGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVME 139
                 E     + +   G +  L+ +++ +    ++ +A   +T I        ++V++
Sbjct: 112 RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 171

Query: 140 ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVK 199
           A+ +   +    +   V V+ +A+ A+ ++   +    +     N    +     S    
Sbjct: 172 ADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 230

Query: 200 FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
             R A   +  L                   +  L  S D +    A   +  L+
Sbjct: 231 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 130 NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI-RHNKPGIEAFRLANGYAA 188
           +   Q        L  +     SD D+  +  A      ++ R ++P I+    A     
Sbjct: 76  SADQQFYSQLQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134

Query: 189 LRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAAL 247
           L + +        Q +A   +  + +  ++   VV       L + L  +   +V+E A+
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194

Query: 248 RGLLELARE 256
             L  +A +
Sbjct: 195 WALGNVAGD 203

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GGL  ++  L  ++    A   + +  +   N  S+ +++ + G + L++   +     +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 199

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
                  +  L         A   A G  AL   L   S +  +  L  ++ L +     
Sbjct: 200 LWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA--- 255

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
                  G    ++ L  S+D +V   A   L  L 
Sbjct: 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 1/161 (0%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L+  L +   ++   A   +  ++ +   ++  V  A GL+ ++    +  +V  
Sbjct: 98  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV-ALLNKTNVKF 156

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
                  +  L   N+        + G  AL + + + + +      + +  +L+  +S+
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259
              + + G  + +    +     + +  L  L  L+     
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-FASDPDVT 157
           G L  L+  L +   N+   A  +++ +  NN +++ +V +  G+E L+     +     
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 158 VRTKALGAISSLI---RHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214
           +   A+ A+  L    +  +    A RL  G   +   L   S     KA   +   L  
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 215 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
             ++ + + + G    ++ L      D +     G  +  
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 27/204 (13%)

Query: 99  GGLAPLLGYLKNSHAN--IRAKAGEVV---TTIVQNNPRSQQLVMEANGLEPLLSNFASD 153
           GG+  L+  +  +     I   A   +   T+  Q    +Q  V    GL  ++      
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV-KLLHP 363

Query: 154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL-- 211
           P      KA   +   +          R       L   L       QR+          
Sbjct: 364 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423

Query: 212 -------------------LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252
                              L  +  +  V+  L    L + L  S   +++  A   L E
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483

Query: 253 LAREKADGSAIKLAEDNEKLKQLL 276
           LA++K    AI+       L +LL
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELL 507

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 4/131 (3%)

Query: 130 NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 189
           N +    +     +  L     +D D  V  KA   +  L +         R     +A+
Sbjct: 4   NYQDDAEL-ATRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 190 RDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 248
              + +   V+  R     +  L +      ++    G P L+  +  S    V   A+ 
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV-KMLGSPVDSVLFYAIT 120

Query: 249 GLLELAREKAD 259
            L  L   +  
Sbjct: 121 TLHNLLLHQEG 131

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 75  IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ 134
           +E     L      +     +  +  +   +  L +   NI+  A  V+  + Q +  + 
Sbjct: 433 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAA 491

Query: 135 QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173
           + +       PL        +  V T A   +  +    
Sbjct: 492 EAIEAEGATAPLT-ELLHSRNEGVATYAAAVLFRMSEDK 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 66.2 bits (161), Expect = 7e-12
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 4/160 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN-FASDPDVT 157
           G L  L+  L +   N+   A  +++ +  NN +++ +V +  G+E L+     +     
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458

Query: 158 VRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214
           +   A+ A+  L       +    A RL  G   +   L   S     KA   +   L  
Sbjct: 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518

Query: 215 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
             ++ + + + G    ++ L      D +     G  +  
Sbjct: 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 558

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 65.1 bits (158), Expect = 1e-11
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GGL  ++  L  ++    A   + +  +   N  S+ +++ + G + L++   +     +
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
                  +  L         A   A G  AL   L   S +  +  L  ++ L +     
Sbjct: 336 LWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK- 393

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
                +     L + L  S+D +V   A   L  L 
Sbjct: 394 -QEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLT 427

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 27/225 (12%), Positives = 78/225 (34%), Gaps = 13/225 (5%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L+  L +   ++   A   +  ++ +   ++  V  A GL+ +++      +V  
Sbjct: 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 292

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218
                  +  L   N+        + G  AL + + + + +      + +  +L+  +S+
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK---------LAEDN 269
              + + G  + +    +     + +  L  L  L+        ++         L  D+
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 412

Query: 270 EKLKQLLGERIKGISLMSPEDLGAAREE---RHLVDSLWNACYNE 311
             +       +  ++  + ++     +      LV ++  A   E
Sbjct: 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 457

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 10/184 (5%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L  +L +    +       +  +        +       L  L+       D+ V
Sbjct: 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLV-QLLGSDDINV 415

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKAL----NLIQYLL 212
            T A G +S+L  +N           G  AL   +    +       A+    +L     
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475

Query: 213 NENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKL 272
           +   +  +V    G P ++  L       + +A +  +  LA   A+ + ++      +L
Sbjct: 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 535

Query: 273 KQLL 276
            QLL
Sbjct: 536 VQLL 539

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 47/253 (18%)

Query: 53  EITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH 112
             T         ++      Q ++  +  L  + +  ++A        +  L   L +  
Sbjct: 109 PSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELAT-----RAIPELTKLLNDED 163

Query: 113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL-------------------LSNFASD 153
             +  KA  +V  + +       ++     +  +                   L N +  
Sbjct: 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223

Query: 154 PDVTVRTKALGAISSLIR----------------------HNKPGIEAFRLANGYAALRD 191
            +  +     G I +L+                       H +    A RLA G   +  
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283

Query: 192 ALGSESVKFQRKALNLIQYLLNENA-SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 250
            L   +VKF     + +Q L   N  S   ++   G   L+  + +     +     R L
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 251 LELAREKADGSAI 263
             L+   ++  AI
Sbjct: 344 KVLSVCSSNKPAI 356

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 23/194 (11%)

Query: 85  HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE 144
           H ++    N +    GL  ++  L         KA   +   +   P +   + E   + 
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533

Query: 145 PL------------------LSNFASDPDVTVRTK---ALGAISSLIRHNKPGIEAFRLA 183
            L                   +       V +        GA+  L R         R  
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-NRIVIRGL 592

Query: 184 NGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVR 243
           N        L S     QR A  ++  L  ++      ++  G    +  L  S +  V 
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVA 651

Query: 244 EAALRGLLELAREK 257
             A   L  ++ +K
Sbjct: 652 TYAAAVLFRMSEDK 665

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 2/109 (1%)

Query: 71  TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN 130
             + +E     L      I     +  +  +   +  L +   NI+  A  V+  + Q +
Sbjct: 565 MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D 623

Query: 131 PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179
             + + +       PL        +  V T A   +  +        + 
Sbjct: 624 KEAAEAIEAEGATAPLT-ELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 4/184 (2%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVT--TIVQNNPRSQQLVMEANGLEPLLSNFASDPDV 156
           GG+  LL          +  A + +    I  N   S       + + PLL+    D   
Sbjct: 536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA 595

Query: 157 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 216
               ++L A+++L   N+   +      G + +   L  + +   R A   +  L+    
Sbjct: 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655

Query: 217 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDN--EKLKQ 274
                       + +  L   ED +   A    L  +           LA  +  + L  
Sbjct: 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715

Query: 275 LLGE 278
           L+  
Sbjct: 716 LIAN 719

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 10/113 (8%), Positives = 31/113 (27%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
             +  L    ++            +  I   + +  + ++       +L    ++P   V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 211
           + + +  I ++I   +   +     +    L            +      Q L
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 4e-11
 Identities = 61/396 (15%), Positives = 125/396 (31%), Gaps = 90/396 (22%)

Query: 11  LLKWSLAHSDGTRSTRNLSEE----DRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLE 66
            L W+L  S      +   EE    + ++ M  ++++       M     + Q      +
Sbjct: 66  RLFWTLL-SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYND 122

Query: 67  SQGVTPQDI--EDMLDELQEHVESIDMAND--LHSIGG-----LAPLLGYLKNSHANIRA 117
           +Q     ++       +L++ +  +  A +  +  + G     +A     +  S+     
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCK 179

Query: 118 KAGEV--VTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK-----ALGAISSLI 170
              ++  +     N+P +  L M    L  +  N+ S  D +   K         +  L+
Sbjct: 180 MDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 171 RHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNL-IQYLLNENASDCSVVDKLGFPR 229
           +            N    L +   +++      A NL  + LL        V D L    
Sbjct: 239 KSK-------PYENCLLVLLNVQNAKAW----NAFNLSCKILL--TTRFKQVTDFLSAAT 285

Query: 230 LMLHLASSEDPDV-REAALRGLL---------ELAREKADGSAIKLAEDNEKLKQLLGER 279
              H++            ++ LL         +L RE    +  +L+        ++ E 
Sbjct: 286 -TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--------IIAES 336

Query: 280 IKGISLMSPEDLGAAREE--RHL----VDSLWNACYN--EPSSLRD--KGLLVLPGEDAP 329
           I+          G A  +  +H+    + ++  +  N  EP+  R     L V P   A 
Sbjct: 337 IRD---------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAH 386

Query: 330 -PPDV------ASKHFEPPLRAWAANPASKKSSVEQ 358
            P  +           +  +     N   K S VE+
Sbjct: 387 IPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 5e-10
 Identities = 52/331 (15%), Positives = 97/331 (29%), Gaps = 72/331 (21%)

Query: 73  QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR 132
           +D++DM   +    E   +     ++ G   L   L +    +  K    V  +++ N  
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF---VEEVLRIN-- 90

Query: 133 SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192
             + +M     E    +  +   +  R +         ++N   ++       Y  LR A
Sbjct: 91  -YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP------YLKLRQA 143

Query: 193 LGSESVKFQRKALNLIQY---------LLNENASDCSVVDKLGFPRLMLHLASSEDPDVR 243
           L        R A N++           +  +      V  K+ F    L+L +   P+  
Sbjct: 144 LLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 244 EAALRGLLELAR----EKADGSA---IKLAEDNEKLKQLLGERIKGISLMSPEDLGAARE 296
              L+ LL         ++D S+   +++     +L++LL  +     L           
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----------- 247

Query: 297 ERHLV-DSLWNA---------CYNEPSSL---RDKGL---LVLPGEDAPPPDVASKHFEP 340
              LV  ++ NA         C      L   R K +   L          D  S    P
Sbjct: 248 ---LVLLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 341 P-----LRAWAANPASKKSSVEQKETPLLLG 366
                 L  +                P  L 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 55/311 (17%), Positives = 99/311 (31%), Gaps = 95/311 (30%)

Query: 1   MAKDGPN-WDGLLKWSLAHSDGTRSTRNLS------EEDRRWFME-AMQSQTVDVIKRMK 52
             +DG   WD    W   + D   +    S       E R+ F   ++   +  +     
Sbjct: 336 SIRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI----- 387

Query: 53  EITLVMQTPEQVLES--QGVTPQDIEDMLDELQEHVESI---DMANDLHSIGGLAPLLGY 107
                   P  +L      V   D+  ++++L  H  S+          SI  +     Y
Sbjct: 388 --------PTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSI-----Y 432

Query: 108 LKNSHANIRAKAGEVVT---TIVQ--NNPRSQQLVMEANGLEPL-------------LSN 149
           L+     ++ K         +IV   N P++     +++ L P              L N
Sbjct: 433 LE-----LKVKLENEYALHRSIVDHYNIPKT----FDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 150 FASDPDVTVRTKA---LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALN 206
                 +T+          +   IRH+          N   ++ + L    +KF +    
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDST------AWNASGSILNTLQ--QLKFYKP--- 532

Query: 207 LIQYLL-NENASDCSVVDKLGF-PRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 264
              Y+  N+   +  V   L F P++  +L  S+  D+   AL          A+  AI 
Sbjct: 533 ---YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL---------MAEDEAIF 580

Query: 265 LAEDNEKLKQL 275
                E  KQ+
Sbjct: 581 ----EEAHKQV 587

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 25/230 (10%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVT 157
           G +  L+  LK+   +++     V+  +    +  S++ + E   ++ L+         +
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

Query: 158 VRTKALGAISSLIRHNKPGIEAFRLANG-----YAALRDALGSESVKFQRKALNLIQYLL 212
                L A+ +L  H           +G        L     + ++        +++ + 
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 213 NENASD---CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDN 269
           +  A++     ++ +    + +L    S    +   A   L  L+          L +  
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA-LWDMG 421

Query: 270 --EKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRD 317
               LK L+  + K I++ S     A          L N   N P+  +D
Sbjct: 422 AVSMLKNLIHSKHKMIAMGS---AAA----------LRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 99  GGLAPLLGYLKNSHA-----------NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147
           GGL  +   L+                +R  AG  +T +   +  ++  +    G    L
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 148 SNFASDPDVTVRTKALGAISSL-IRHNKPGIEAFRLANGYAAL-RDALGSESVKFQRKAL 205
                     ++      + +L  R +    +  R      AL   AL  +     +  L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 206 NLIQYLLNENASDC-SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
           + +  L      +   +    G    ++   +        A +     + R
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTI-VQNNPRSQQLVMEANGLEPLLSNFASDPDVT 157
           G +  L+  LK+   +++     V+  +  + +  S++ + E   ++ L+         +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 186

Query: 158 VRTKALGAISSLIRHNKPGIEAFRLANG-----YAALRDALGSESVKFQRKALNLIQYLL 212
                L A+ +L  H           +G        L     + ++        +++ + 
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

Query: 213 NENASD---CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254
           +  A++     ++ +    + +L    S    +   A   L  L+
Sbjct: 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-------NPRSQQLVMEANGLEPLLSNFA 151
           G LA L+G L            E    I++N       N   +Q++ E N L+ LL    
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL-QHL 272

Query: 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 211
               +T+ + A G + +L   N    EA       + L++ + S+       +   ++ L
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

Query: 212 LNENASD 218
           +    + 
Sbjct: 333 MANRPAK 339

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 18/186 (9%)

Query: 99  GGLAPLLGYLKNSHA-----------NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147
           GGL  +   L+                +R  AG  +T +   +  ++  +    G    L
Sbjct: 73  GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 132

Query: 148 SNFASDPDVTVRTKALGAISSL-IRHNKPGIEAFRLANGYAAL-RDALGSESVKFQRKAL 205
                     ++      + +L  R +    +  R      AL   AL  +     +  L
Sbjct: 133 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192

Query: 206 NLIQYLLNENASDCSVVDKLG-----FPRLMLHLASSEDPDVREAALRGLLELAREKADG 260
           + +  L      + + +  +          + + + +    + E+    L  ++   A  
Sbjct: 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252

Query: 261 SAIKLA 266
              +  
Sbjct: 253 EDHRQI 258

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 31/197 (15%), Positives = 71/197 (36%), Gaps = 20/197 (10%)

Query: 79  LDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM 138
           L  L + +        L S  G++ L+  L +S   IR     ++  + ++N   Q++V 
Sbjct: 146 LTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVA 205

Query: 139 EANGLEPLLSNFASDPDV---TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 195
             N  E LL     + +     V    L  + +L+++N      F+  +    ++     
Sbjct: 206 FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV 265

Query: 196 ESVKF----QRK-----ALNLIQYLLNENASDCS------VVDKLGFPRLMLHLA--SSE 238
                    Q+       L L++ L++ N    +       + + G  + +  +   +  
Sbjct: 266 GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV 325

Query: 239 DPDVREAALRGLLELAR 255
             D+    +  + E+ R
Sbjct: 326 PADILTETINTVSEVIR 342

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 16/158 (10%)

Query: 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 163
            L  + +S   IRA  G ++TTI                L P L +     D      A 
Sbjct: 95  CLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSEDYNTCEGAF 149

Query: 164 GAISSLIRHNKPGIE----AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 219
           GA+  +   +   ++       L              S K +  A+  +   +       
Sbjct: 150 GALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA- 208

Query: 220 SVVDKLGFPRLM---LHLASSEDPDVREAALRGLLELA 254
                L     +     LA  E+P+VR+   R L+ L 
Sbjct: 209 ---LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 11/179 (6%)

Query: 77  DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL 136
           D   ELQ+ V       DL     +      +K+  A +RA A   V    +N     + 
Sbjct: 264 DKFTELQKAVGPEITKTDL-----VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318

Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
            +  + + P +    SD +  V++     I  L        +   + +        L  E
Sbjct: 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLKDE 375

Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
             + +   ++ +  +         +   L  P + + LA      VR A +  +  LA 
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIR-QLSQSL-LPAI-VELAEDAKWRVRLAIIEYMPLLAG 431

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 10/152 (6%)

Query: 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 163
            + +L +    IR  A   +  +V+   +          + P +   + DP+   R   L
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT----IIPKVLAMSGDPNYLHRMTTL 501

Query: 164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 223
             I+ L       I    +      +    G      +      +Q +      + ++  
Sbjct: 502 FCINVLSEVCGQDITTKHMLP---TVLRMAGDPVANVRFNVAKSLQKIG-PILDNSTLQS 557

Query: 224 KLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
           ++    ++  L   +D DV+  A   L  L+ 
Sbjct: 558 EV--KPILEKLTQDQDVDVKYFAQEALTVLSL 587

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 6/152 (3%)

Query: 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 163
                 +   ++R  A E    I Q  P+          + P L   A D    VR    
Sbjct: 208 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE----ALVMPTLRQAAEDKSWRVRYMVA 263

Query: 164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 223
              + L +   P I    L   +  L     +E        +      L+ +  +  ++ 
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 224 KLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
           ++     +  L S  +  V+ A    ++ L+ 
Sbjct: 324 QI--LPCIKELVSDANQHVKSALASVIMGLSP 353

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 12/174 (6%)

Query: 82  LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN 141
           L    E I +     S+  L  ++   +++   +R    E +  +               
Sbjct: 387 LDCVNEVIGIRQLSQSL--LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDE 440

Query: 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ 201
            L  L   +  D    +R  A   +  L+         +  A     +    G  +   +
Sbjct: 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHR 497

Query: 202 RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255
              L  I  L      D  +  K   P ++  +A     +VR    + L ++  
Sbjct: 498 MTTLFCINVLSEVCGQD--ITTKHMLPTVL-RMAGDPVANVRFNVAKSLQKIGP 548

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 7/167 (4%)

Query: 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQR 202
           +   +  + S  D   +      I      ++   +      G   L D L S +   Q+
Sbjct: 4   IPKAV-QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 203 KALNLIQYLLNENASDCSV-VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 261
            A   ++ L+  + ++      + G    +  L  + + ++++     L  L+       
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 262 AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNAC 308
            + +A+    L   +     G    +        +     +  +NA 
Sbjct: 123 EL-IADALPVLADRVIIPFSGWCDGNSNMSREVVDP----EVFFNAT 164

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 5/137 (3%)

Query: 101 LAPLLGYLKNSHAN--IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           L   +  L+  H      + A   +         +++ V +  G+  LL       +  V
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDV 68

Query: 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNENAS 217
           +    GA+ +L+  +          NG   L   L  +  ++ +++   L+  L + +  
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-K 127

Query: 218 DCSVVDKLGFPRLMLHL 234
             +++       L  ++
Sbjct: 128 LKNLMITEALLTLTENI 144

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 20/186 (10%), Positives = 64/186 (34%), Gaps = 7/186 (3%)

Query: 75  IEDMLDELQEHVESIDMANDLHS--IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR 132
           +E+  D +    + +   +  +S  +G    ++   K+++    A A + V  I      
Sbjct: 37  LEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKT 94

Query: 133 SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192
                   + +   L +   +   +V      A+ ++ ++  P   + R  +    + + 
Sbjct: 95  PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH 154

Query: 193 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM---LHLASSEDPDVREAALRG 249
           +  ++ + + +   L    + E     S + +     ++   + + +   P +R      
Sbjct: 155 MKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES 214

Query: 250 LLELAR 255
              L +
Sbjct: 215 FAILIK 220

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 15/197 (7%)

Query: 93  NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152
           N +  +  L+  +          +  A  V      +  R  +L+ +   +   +S    
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319

Query: 153 DPDVTVRTKALGAISSLIRHNKPGIE----AFRLANGYAALRDALGSESVKFQRKALNLI 208
                +   + GAI +L             A R     +A+ D L +E  +  + A   +
Sbjct: 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379

Query: 209 QYLLNENASDCSVVDKLGFPRLMLHLASSEDP-------DVREAALRGLLELAREKADGS 261
           + L   +A +  ++ K   P L+ +L   +         D   + L  + E+  E  +  
Sbjct: 380 RNLA-VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA- 437

Query: 262 AIKLAEDN--EKLKQLL 276
           A KL E    EKL  + 
Sbjct: 438 AKKLRETQGIEKLVLIN 454

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 45/264 (17%), Positives = 87/264 (32%), Gaps = 49/264 (18%)

Query: 70  VTPQDIEDMLDELQEHVESID--MANDL-HSIGGLA------------PLLGYLKNSHAN 114
            +  +I  +L EL+E+   +D         +IG  A             LL  ++     
Sbjct: 346 ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNY 405

Query: 115 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKA---LGAISSLIR 171
           +  +A  V+  I +  P   + ++       L  N  S  +   R      +G  +  I 
Sbjct: 406 VVQEAIVVIRDIFRKYPNKYESIIAT-----LCENLDSLDEPDARAAMIWIVGEYAERID 460

Query: 172 HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-SVVDKLGFPRL 230
           +     E         +  +    ES + Q   L  I  L  +  S+   +V ++    L
Sbjct: 461 N---ADELLE------SFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQV----L 507

Query: 231 MLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPED 290
            L    S++PD+R+        L           L+ D    K+++      IS  +   
Sbjct: 508 SLATQDSDNPDLRDRG-YIYWRL-----------LSTDPVTAKEVVLSEKPLISEETDLI 555

Query: 291 LGAAREERHLVDSLWNACYNEPSS 314
                +E         + Y++P +
Sbjct: 556 EPTLLDELICHIGSLASVYHKPPN 579

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 26/182 (14%), Positives = 65/182 (35%), Gaps = 16/182 (8%)

Query: 77  DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL 136
           ++L++L      ++       +  L  ++   K+S+  + A AG+ +  + +   +    
Sbjct: 37  EVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNVVLVAMAGKCLALLAKGLAKR--F 92

Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
              A+   P L     +    V T    AI ++        +         ++ ++L ++
Sbjct: 93  SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQ-------ESIVESLSNK 145

Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM---LHLASSEDPDVREAALRGLLEL 253
           +   + +    I   L         ++K     L    +   +  DP VR+++   L  L
Sbjct: 146 NPSVKSETALFIARALTRTQPT--ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTL 203

Query: 254 AR 255
            +
Sbjct: 204 IK 205

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 12/72 (16%), Positives = 29/72 (40%)

Query: 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 160
              ++  L N + +++++    +   +     +         L   L    ++PD TVR 
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194

Query: 161 KALGAISSLIRH 172
            +  A+ +LI+ 
Sbjct: 195 SSAEALGTLIKL 206

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 101 LAPLLGYLKNSHAN-IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR 159
           L  L   LK S A  +  +  +    + +  P   + ++      P+L       D   +
Sbjct: 71  LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI------PVLFANYRIGDEKTK 124

Query: 160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 219
                A+  + + N   + +             L S++ + +  ALN I+ +   +    
Sbjct: 125 INVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFK-- 177

Query: 220 SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGER 279
                   PR++  L    D  VR +A+  L            + LA  N+KL++++ +R
Sbjct: 178 --YVNPFLPRIINLL-HDGDEIVRASAVEAL------------VHLATLNDKLRKVVIKR 222

Query: 280 IKGISLMSPEDLGAARE 296
           ++ ++  S       +E
Sbjct: 223 LEELNDTSSLVNKTVKE 239

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 37/170 (21%), Positives = 58/170 (34%), Gaps = 34/170 (20%)

Query: 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 160
           + PL+  LK+  A +R  A + +  I   + R+             L     D D  VR 
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALGQI--GDERA----------VEPLIKALKDEDGWVRQ 99

Query: 161 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS 220
            A  A+  +                   L  AL  E    +  A   +  + +E A    
Sbjct: 100 SAAVALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA---- 144

Query: 221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNE 270
            V+ L      +     ED  VR++A   L E+  E+   +  KLAE   
Sbjct: 145 -VEPL------IKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGT 187

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 40.9 bits (94), Expect = 7e-04
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 9/125 (7%)

Query: 133  SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192
               L      +  LL       +   R      +  L   +               L+  
Sbjct: 922  VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLKGY 973

Query: 193  LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252
            L S S   +   +  +++ ++++      + K       L      D +VR  AL     
Sbjct: 974  LISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLEDPDLNVRRVALVTFNS 1032

Query: 253  LAREK 257
             A  K
Sbjct: 1033 AAHNK 1037

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	100.0
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.89
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.88
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.88
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.88
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.86
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.86
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.86
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.86
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.84
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.84
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.84
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.83
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.83
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.82
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.81
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.81
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.8
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.8
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.78
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.78
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.76
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.76
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.73
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.71
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.71
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.71
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.68
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.65
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.55
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.42
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.36
3grl_A	651	General vesicular transport factor P115; vesicle t	99.31
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.18
3grl_A	651	General vesicular transport factor P115; vesicle t	99.03
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.01
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.98
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.95
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.91
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.88
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.82
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.65
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.59
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.58
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.49
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.47
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.47
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.46
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	98.45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.32
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.3
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.23
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.23
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.14
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.14
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.12
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.11
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.1
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.06
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.01
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.99
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.98
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.96
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.96
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.94
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.91
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.78
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.78
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.77
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.74
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.48
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.45
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.43
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.3
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.12
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.65
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.54
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.47
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.07
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.97
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.91
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.9
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.86
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	95.85
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.63
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.56
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.38
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.18
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.99
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.89
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.3
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.26
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.14
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.04
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.02
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.0
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.88
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	93.8
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.37
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.93
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.79
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.24
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.14
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.13
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	91.7
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.23
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.4
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	90.2
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.12
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.87
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.66
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	89.14
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	88.3
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	88.27
3hjl_A	329	Flagellar motor switch protein FLIG; armadillo rep	88.07
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	87.73
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	87.06
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	86.48
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	85.67
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	85.44
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	85.36
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	85.33
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	85.02
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	84.9
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	84.85
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	84.43
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	83.44
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.4
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	83.1
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.25
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	81.63

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=100.00  E-value=2.7e-45  Score=357.30  Aligned_cols=275  Identities=27%  Similarity=0.351  Sum_probs=239.9

Q ss_pred             HHHHHHHHhhCCccHHHHHHHHHHHhcCcH--Hhhhh-CCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHH-hh
Q 016280           33 RRWFMEAMQSQTVDVIKRMKEITLVMQTPE--QVLES-QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YL  108 (392)
Q Consensus        33 ~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~--~~l~~-~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~-lL  108 (392)
                      ..||++||.++ +|++++||+++.++.+|.  ...+. .+.+.++++.|++.|.++++++|||++|++.||+++|+. +|
T Consensus        13 ~~~~~~~~~~~-~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL   91 (296)
T 1xqr_A           13 LVPRGSHMRGQ-RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL   91 (296)
T ss_dssp             -------CCSC-HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence            47999999874 999999999999998862  11111 124568999999999999999999999999999999999 99


Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHH
Q 016280          109 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA  188 (392)
Q Consensus       109 ~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~  188 (392)
                      .++++.||+.|+|+||++++|||.+|+.|++.|++++|+.+|.++++.+++++|+||||+++|++++..+.|...||++.
T Consensus        92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~  171 (296)
T 1xqr_A           92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV  171 (296)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999987668899999999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhh
Q 016280          189 LRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAED  268 (392)
Q Consensus       189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~  268 (392)
                      |+.+|++++.+++.+|+|+|++|+.++++.+..+++.|+++.|+.||.+++..++++|+++|.+|+++.++....| +..
T Consensus       172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~-~~~  250 (296)
T 1xqr_A          172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC-REP  250 (296)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH-HCG
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH-hcc
Confidence            9999999999999999999999999888889999999999999999999999999999999999999976655555 445


Q ss_pred             HHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCcc
Q 016280          269 NEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS  314 (392)
Q Consensus       269 ~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~  314 (392)
                      ...|..+|+++++.|+.     .++++|+.++|..|+..||+++++
T Consensus       251 ~~~l~~lL~~~~~~lq~-----~e~~~e~~~~~~~il~~~f~~~~~  291 (296)
T 1xqr_A          251 ELGLEELLRHRCQLLQQ-----HEEYQEELEFCEKLLQTCFSSPAD  291 (296)
T ss_dssp             GGCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHHHHcCCCCC
Confidence            46689999999988874     356899999999999999998653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2e-22  Score=182.18  Aligned_cols=185  Identities=21%  Similarity=0.257  Sum_probs=171.6

Q ss_pred             CHHHHHHHHHHHHHhh-cCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lv-e~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++.+..++..|..+. .+.++...+.+.|+++.|+.+|.++++.+|..|+|+|++++.+++..+..+++.|+++.|+.+
T Consensus        25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  104 (210)
T 4db6_A           25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  104 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence            4567788999999999 455778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      |.+ .+..++..|+|+|++++.+++.....+...|+++.|+.+|.+++.+++..|+++|.+|+..++..+..+.+.|+++
T Consensus       105 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~  183 (210)
T 4db6_A          105 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE  183 (210)
T ss_dssp             TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred             HcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence            887 4789999999999999998888888888999999999999999999999999999999988788888999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      .|+.++.+++..+++.|+.+|.+|+++
T Consensus       184 ~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          184 KLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999753

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.89  E-value=2.4e-21  Score=178.07  Aligned_cols=188  Identities=19%  Similarity=0.288  Sum_probs=174.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCC-ChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iD-nA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++.+..++..|..++...+ +...+.+.|+++.|+.+|++++..+|..|+++|++++.+++..+..+++.|+++.|+.+
T Consensus        15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l   94 (252)
T 4hxt_A           15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL   94 (252)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            35677889999999988764 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.+ .+..++..|+++|++++.+++.....+...|+++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++
T Consensus        95 l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  173 (252)
T 4hxt_A           95 LTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE  173 (252)
T ss_dssp             TTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHH
Confidence            886 5789999999999999988888899999999999999999999999999999999999987777778899999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      .|+.++.+++..+++.|+.+|.+|+.+++.
T Consensus       174 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  203 (252)
T 4hxt_A          174 VLVKLLTSTDSEVQKEAARALANIASGPTS  203 (252)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTSBHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999986643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.88  E-value=1.4e-21  Score=202.67  Aligned_cols=253  Identities=15%  Similarity=0.143  Sum_probs=206.5

Q ss_pred             CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-...|...|.+++..- ++...+++.|++++|+.+|.+++..+|..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus       133 ~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l  212 (529)
T 3tpo_A          133 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL  212 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence            4566678889999988643 567889999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC----CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280          150 FASDP----DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL  225 (392)
Q Consensus       150 L~s~~----~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~  225 (392)
                      |....    ...+++.++|+|++++++..+........++++.|+.+|.+++..++..|+|+|++|+.........+.+.
T Consensus       213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~  292 (529)
T 3tpo_A          213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK  292 (529)
T ss_dssp             TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT
T ss_pred             HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc
Confidence            87532    35678899999999999987766666678999999999999999999999999999998777778888999


Q ss_pred             CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHH
Q 016280          226 GFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGA  293 (392)
Q Consensus       226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~  293 (392)
                      |+++.|+.+|.+++..+++.++++|++|+.+++......+ .+....|..+|.           --+..|...+.+....
T Consensus       293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~  372 (529)
T 3tpo_A          293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ  372 (529)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence            9999999999999999999999999999988763211110 133333333332           3334444455555555


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          294 AREERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       294 ~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      +.+. .++..|+..+.+....+|++++|+|.
T Consensus       373 v~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~  402 (529)
T 3tpo_A          373 VVNH-GLVPFLVGVLSKADFKTQKAAAWAIT  402 (529)
T ss_dssp             HHHT-THHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHhc-CcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            5553 57788888888888889999888874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.88  E-value=8.2e-22  Score=182.75  Aligned_cols=185  Identities=20%  Similarity=0.229  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280           73 QDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        73 e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      +.+..++..|..++. +-++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..+..+++.|+++.|+.+|.
T Consensus        27 ~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~  106 (252)
T 4db8_A           27 QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  106 (252)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence            445556666644333 3355678889999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM  231 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L  231 (392)
                      + ++..++..|+++|++++.+.+.....+...|+++.|+.+|.+++..++..|+++|.+|+..++.....+.+.|+++.|
T Consensus       107 ~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  185 (252)
T 4db8_A          107 S-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL  185 (252)
T ss_dssp             C-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             C-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence            7 578999999999999998876655888999999999999999999999999999999998777778889999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          232 LHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       232 v~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.+|.+++..+++.|+.+|.+|+.+++
T Consensus       186 ~~ll~~~~~~v~~~a~~~L~~l~~~~~  212 (252)
T 4db8_A          186 VQLLSSPNEQILQEALWALSNIASGGN  212 (252)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999997664

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.88  E-value=1.5e-21  Score=201.93  Aligned_cols=253  Identities=14%  Similarity=0.148  Sum_probs=210.6

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      .++-...|...|.++.. +-++...+++.|++++|+.+|.+++..+|..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus       114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l  193 (510)
T 3ul1_B          114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL  193 (510)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence            45566788899999865 55778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC----CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280          150 FASDP----DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL  225 (392)
Q Consensus       150 L~s~~----~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~  225 (392)
                      +.+..    ...+++.++|++++++++..+........++++.|+++|.+++..++..|+|+|++|+.........+.+.
T Consensus       194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~  273 (510)
T 3ul1_B          194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK  273 (510)
T ss_dssp             TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred             HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence            87532    34678899999999999887666666678899999999999999999999999999998777777888999


Q ss_pred             CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh------------hhhhhhhHHHHHHHHHHHHhhhcCCChhhHHH
Q 016280          226 GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS------------AIKLAEDNEKLKQLLGERIKGISLMSPEDLGA  293 (392)
Q Consensus       226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~------------~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~  293 (392)
                      |+++.|+.+|.+++..+++.++++|++|+++++...            ..++.++...++...---+..|...+.+....
T Consensus       274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~  353 (510)
T 3ul1_B          274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ  353 (510)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            999999999999999999999999999998876321            12223444444444444555666556666565


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          294 AREERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       294 ~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      +.+. .++..|+..+.+....+|++++|+|.
T Consensus       354 v~~~-g~i~~Lv~lL~~~~~~v~~~Aa~aL~  383 (510)
T 3ul1_B          354 VVNH-GLVPFLVGVLSKADFKTQKEAAWAIT  383 (510)
T ss_dssp             HHHT-THHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHhc-CCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6554 67888888888888999999998874

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.88  E-value=1.1e-21  Score=195.19  Aligned_cols=240  Identities=15%  Similarity=0.123  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHHHhhcCCC-ChHHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHH
Q 016280           72 PQDIEDMLDELQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iD-nA~d~~~lGg-l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~  148 (392)
                      ++-+..|...|.+++..-+ +...+...|| +++|+.+|.++++++|..|+|+|++++.+ ++..+..|.+.|++++|++
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            3456789999999997665 4555656777 99999999999999999999999999986 7889999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchH
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCS  220 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~----kl~~kA~~lLs~L~~---~~~~~~~  220 (392)
                      +|.+..+..++..|+.||.+|+.+++..+..+. ..||++.|+.+|.+.+.    .++..|+++|++|+.   .+++.++
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            865545789999999999999987766777777 78999999999987654    699999999999996   5778889


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 016280          221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAREERH  299 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~  299 (392)
                      .+.+.|+++.|+.+|++++..+++.|+.+|.+|+..++....... .+....|.++|.       ..+    ..+++  .
T Consensus       258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~-------s~~----~~i~~--~  324 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-------SKH----KMIAM--G  324 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT-------CSS----HHHHH--H
T ss_pred             HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh-------CCC----HHHHH--H
Confidence            999999999999999999999999999999999976653321110 233333333332       111    22332  4


Q ss_pred             HHHHHHHHHhCCCccccccceeeccC
Q 016280          300 LVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       300 ~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      -++.|.+.+.+.|..+++.+ .+-||
T Consensus       325 A~~aL~nL~~~~~~~~~~~~-~~~~~  349 (354)
T 3nmw_A          325 SAAALRNLMANRPAKYKDAN-IMSPG  349 (354)
T ss_dssp             HHHHHHHHHTTCCGGGC---------
T ss_pred             HHHHHHHHHcCCHHHHhhhc-ccCCc
Confidence            68999999999999888665 44444

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.86  E-value=6.9e-21  Score=172.02  Aligned_cols=163  Identities=21%  Similarity=0.230  Sum_probs=150.3

Q ss_pred             HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280           96 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus        96 ~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      ...|+.++|+.+|+++++.+|..|+|+|++++..++..+..+++.|+++.|+.+|.+ .++.++..|+++|++++.+++.
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence            346788999999999999999999999999999999999999999999999999887 4889999999999999999888


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ....++..|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++.|+.+|.+++..+++.|+.+|.+++.
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            88999999999999999999999999999999999998777778889999999999999999999999999999999998


Q ss_pred             CCCh
Q 016280          256 EKAD  259 (392)
Q Consensus       256 ~~~~  259 (392)
                      +++.
T Consensus       168 ~~~~  171 (210)
T 4db6_A          168 GGNE  171 (210)
T ss_dssp             SCHH
T ss_pred             CCcH
Confidence            8653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.86  E-value=1.5e-20  Score=193.40  Aligned_cols=251  Identities=16%  Similarity=0.189  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           72 PQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++-+..++..|..++.. .++...++..|++++|+.+|.++++.+|..|+|+|++++.+++.++..+++.|++++|+.+|
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL  211 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL  211 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence            67788899999999986 56788889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      ..+.+..++..|+|+|++++++.+.. ......++++.|+.+|.+.+..++..|+++|++|+...+...+.+.+.|+++.
T Consensus       212 ~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          212 NEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence            76678999999999999999986443 34456999999999999999999999999999999876666778889999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHH------------HhhhcCCChhhHHHHHHH
Q 016280          231 MLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGER------------IKGISLMSPEDLGAAREE  297 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~------------~~~i~~~~~ed~~~~~ee  297 (392)
                      |+.+|.+++..+++.|+.+|++|+.+++......+ .+....|..+|.+.            +..|...+.+....+.+.
T Consensus       291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~  370 (528)
T 4b8j_A          291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINA  370 (528)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Confidence            99999999999999999999999997764322111 23344455555432            222332344443333332


Q ss_pred             HHHHHHHHHHHhCCCccccccceeecc
Q 016280          298 RHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       298 ~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                       .++..|+..+-.....+|++++|+|.
T Consensus       371 -~~i~~L~~lL~~~~~~v~~~a~~aL~  396 (528)
T 4b8j_A          371 -GIIGPLVNLLQTAEFDIKKEAAWAIS  396 (528)
T ss_dssp             -TCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             45666777776677788888887764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.86  E-value=2.9e-20  Score=170.86  Aligned_cols=188  Identities=18%  Similarity=0.251  Sum_probs=175.2

Q ss_pred             CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +.+-+..++..|..++.. .++...+.+.|+++.|+.+|.++++.+|..|+++|++++..++..+..+++.|+++.|+.+
T Consensus        57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  136 (252)
T 4hxt_A           57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL  136 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            467788999999999987 6778889999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.+ .++.++..|+++|++++.+++.....+...|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++
T Consensus       137 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  215 (252)
T 4hxt_A          137 LTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE  215 (252)
T ss_dssp             TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH
T ss_pred             HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            886 5789999999999999998887778889999999999999999999999999999999987777888999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      .|+.++.+++..+++.|+.+|.+|+...+.
T Consensus       216 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          216 VLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999999987763

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.86  E-value=1.3e-20  Score=174.60  Aligned_cols=185  Identities=21%  Similarity=0.239  Sum_probs=170.5

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..++..|..++. +.++...+.+.|+++.|+.+|.++++.+|..|+|+|++++.+.+..+..+++.|+++.|+.+
T Consensus        67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  146 (252)
T 4db8_A           67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  146 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence            46778899999999997 56788999999999999999999999999999999999999988776889999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      |.+ .+..++..|+++|++++.+.+.....+...|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++
T Consensus       147 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  225 (252)
T 4db8_A          147 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE  225 (252)
T ss_dssp             GGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             HhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Confidence            876 5889999999999999998888888888999999999999999999999999999999988788888999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      .|+.++.+++..+++.|+.+|.+|+++
T Consensus       226 ~L~~ll~~~~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          226 KLEQLQSHENEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             HHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.84  E-value=9.4e-20  Score=181.69  Aligned_cols=252  Identities=17%  Similarity=0.146  Sum_probs=201.5

Q ss_pred             CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..++..|..++.. .++...+++.|+++.|+.+|+++++.+|..|+|+|++++.+++..+..+++.|+++.|+.+
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  157 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL  157 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence            456778899999998874 3567778889999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCC-cccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          150 FASDPDVTVRTKALGAISSLIRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~-~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      +.++.+..+|..|+++|++++++. +.....+ ..++++.|+.++.+.+..++..|+|+|++|+...+.....+.+.|++
T Consensus       158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  236 (450)
T 2jdq_A          158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC  236 (450)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH
Confidence            987678999999999999999876 3332233 38999999999999999999999999999998766677788889999


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHHHH
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAARE  296 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~~e  296 (392)
                      +.|+.+|.+++..+++.|+.+|.+++.+.+......+ .+....|..+|.           .-+..|...+.+....+.+
T Consensus       237 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~  316 (450)
T 2jdq_A          237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID  316 (450)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999988763221110 123333333332           2233344344555444444


Q ss_pred             HHHHHHHHHHHHhCCCccccccceeecc
Q 016280          297 ERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       297 e~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      . .++..|+..+-.....+|++++|+|.
T Consensus       317 ~-~~l~~L~~~l~~~~~~v~~~a~~~L~  343 (450)
T 2jdq_A          317 A-NIFPALISILQTAEFRTRKEAAWAIT  343 (450)
T ss_dssp             T-THHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3 56777777777777889999888875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.84  E-value=4e-20  Score=189.85  Aligned_cols=231  Identities=14%  Similarity=0.103  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHhhcCCC-ChHHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHh
Q 016280           73 QDIEDMLDELQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iD-nA~d~~~lGg-l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +-+..|...|.+++.+-+ +...+...|| +++|+.+|.+++.+++..|+|+|++++.+ ++..+..|.+.|++++|+.+
T Consensus       215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l  294 (458)
T 3nmz_A          215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC  294 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence            346788899999998765 3445556666 99999999999999999999999999985 78899999999999999998


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchHH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCSV  221 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~----kl~~kA~~lLs~L~~---~~~~~~~~  221 (392)
                      |.+..+..++..|+.||.+|+.+++..+..+. ..||++.|+.+|.+.+.    .++..|+++|++|+.   .+++.++.
T Consensus       295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~  374 (458)
T 3nmz_A          295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI  374 (458)
T ss_dssp             HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            66656789999999999999986766777777 78999999999987654    599999999999996   67788899


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 016280          222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL  300 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~  300 (392)
                      +.+.|+++.|+.+|++++..+++.|+.+|.+|+..++....... .+....|.++|       ...+    ..+++  ..
T Consensus       375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL-------~s~~----~~v~~--~A  441 (458)
T 3nmz_A          375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-------HSKH----KMIAM--GS  441 (458)
T ss_dssp             HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT-------TCSS----HHHHH--HH
T ss_pred             HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-------hCCC----HHHHH--HH
Confidence            99999999999999999999999999999999976653221110 12233333222       2111    12232  46


Q ss_pred             HHHHHHHHhCCCcccc
Q 016280          301 VDSLWNACYNEPSSLR  316 (392)
Q Consensus       301 ~~~L~~~~f~~~~~~~  316 (392)
                      ++.|.+.+.+.|...|
T Consensus       442 a~AL~nL~~~~p~ky~  457 (458)
T 3nmz_A          442 AAALRNLMANRPAKYK  457 (458)
T ss_dssp             HHHHHHHHTCCSCC--
T ss_pred             HHHHHHHHcCCHhhhc
Confidence            8999999998887655

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.84  E-value=7.9e-20  Score=186.74  Aligned_cols=181  Identities=13%  Similarity=0.162  Sum_probs=159.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChH-HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDMAN-DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~-d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++.+..|...|..++..-++.. .+.+.||+++|+.+|.++++.++..|+|+|.+++..|+..+..|++.|++++|+++
T Consensus        15 ~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l   94 (457)
T 1xm9_A           15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL   94 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence            44667889999999987666655 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh--------cCC--------CHHHHHHHHHHHHHHhh
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--------GSE--------SVKFQRKALNLIQYLLN  213 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL--------~s~--------d~kl~~kA~~lLs~L~~  213 (392)
                      |....+..++..|+|||++++.+ +.....++. ||++.|+++|        .+.        +..+++.|+|+|++|+.
T Consensus        95 L~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~  172 (457)
T 1xm9_A           95 LRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS  172 (457)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred             HhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence            98446889999999999999988 667777888 9999999999        332        46777799999999998


Q ss_pred             cCCcchHHHHhc-CchHHHHHhhcC------CChHHHHHHHHHHHHHH
Q 016280          214 ENASDCSVVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELA  254 (392)
Q Consensus       214 ~~~~~~~~l~~~-G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~  254 (392)
                      . ++.+..+.+. |+++.|+.+|.+      .+..+++.++.+|.+|+
T Consensus       173 ~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs  219 (457)
T 1xm9_A          173 A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS  219 (457)
T ss_dssp             S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred             C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence            6 7788899998 999999999985      46678999999999886

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.84  E-value=1e-19  Score=188.06  Aligned_cols=188  Identities=11%  Similarity=0.140  Sum_probs=166.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL  146 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L  146 (392)
                      .+++....+...++.+...-.|  -..+++.|++|+|+.+|.+ +++.+|..|+|+|+++|..++..+..|++.|++|.|
T Consensus        69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L  148 (510)
T 3ul1_B           69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF  148 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence            3567777888889888765555  4789999999999999975 678999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCCcchHH
Q 016280          147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-----VKFQRKALNLIQYLLNENASDCSV  221 (392)
Q Consensus       147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-----~kl~~kA~~lLs~L~~~~~~~~~~  221 (392)
                      +.+|.+ ++..++..|+|||++|+.+++..+..+...||++.|+.+|.+.+     ..+++.++|++++++.+.......
T Consensus       149 v~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  227 (510)
T 3ul1_B          149 ISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  227 (510)
T ss_dssp             HHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred             HHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence            999987 58899999999999999998888999999999999999998754     467889999999999876555555


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ....|+++.|+.+|.+++.+++..|+.+|.+|+.+..
T Consensus       228 ~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~  264 (510)
T 3ul1_B          228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN  264 (510)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh
Confidence            5567899999999999999999999999999998775

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.83  E-value=2.2e-19  Score=185.18  Aligned_cols=252  Identities=16%  Similarity=0.168  Sum_probs=201.0

Q ss_pred             CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..++..|..++... ++...++..|++++|+.+|.++++.+|..|+|+|++++.+++..+..++..|+++.|+.+
T Consensus       144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  223 (530)
T 1wa5_B          144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  223 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence            4567788999999998854 567778889999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.+ .+..++..|+|+|++++++..+....+...++++.|+.+|.+.+..++..|+++|.+|+...+.....+.+.|+++
T Consensus       224 l~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  302 (530)
T 1wa5_B          224 FNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  302 (530)
T ss_dssp             GGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             hcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence            887 6889999999999999998744445666789999999999999999999999999999987667778888999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHHHHH
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAAREE  297 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~~ee  297 (392)
                      .|+.+|.+++..+++.|+.+|++|+.+++......+ .+....|..+|.           .-+..|...+.+....+.+.
T Consensus       303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~  382 (530)
T 1wa5_B          303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA  382 (530)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999999999999999987753221111 123333333332           22333333444444444332


Q ss_pred             HHHHHHHHHHHhCCCccccccceeecc
Q 016280          298 RHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       298 ~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                       .++..|+..+-.....+|++++|+|.
T Consensus       383 -~~l~~L~~lL~~~~~~v~~~a~~aL~  408 (530)
T 1wa5_B          383 -NLIPPLVKLLEVAEYKTKKEACWAIS  408 (530)
T ss_dssp             -TCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             45667777666677788888888774

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.83  E-value=4.5e-19  Score=183.80  Aligned_cols=253  Identities=11%  Similarity=0.132  Sum_probs=195.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +++....++..+..++..-.+  -..+++.|++|+|+.+|. ++++.++..|+|+|++++.+++.....+++.|++|.|+
T Consensus        89 d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv  168 (529)
T 3tpo_A           89 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI  168 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            566777888888887754444  578999999999999996 46799999999999999999999889999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-----VKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-----~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      .+|.+ ++..++..|+|||++|+.+++.....++..||++.|+.+|.+.+     ..+++.++|++++++.+........
T Consensus       169 ~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  247 (529)
T 3tpo_A          169 SLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  247 (529)
T ss_dssp             HHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred             HHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            99877 58899999999999999998888999999999999999998654     4678899999999998765555555


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh-hhhhHHHHHHHHH-----------HHHhhhcCCChhh
Q 016280          223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK-LAEDNEKLKQLLG-----------ERIKGISLMSPED  290 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~-~~~~~~~L~~~L~-----------~~~~~i~~~~~ed  290 (392)
                      ...|+++.|+.+|.+++.+++..|+.+|.+++.+........ ..+....|.++|.           .-+..|-..+.+.
T Consensus       248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  327 (529)
T 3tpo_A          248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  327 (529)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence            667899999999999999999999999999998775321100 0233444444443           2223333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          291 LGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       291 ~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      ...+.+ ...+..|...+.+....+|++++|+|..
T Consensus       328 ~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~n  361 (529)
T 3tpo_A          328 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSN  361 (529)
T ss_dssp             HHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            222222 2445666676777777788888888753

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.82  E-value=1.9e-18  Score=177.58  Aligned_cols=252  Identities=12%  Similarity=0.120  Sum_probs=200.3

Q ss_pred             CHHHHHHHHHHHHHhhcCC--CChHHHHHcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESI--DMANDLHSIGGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i--DnA~d~~~lGgl~~Ll~lL~s~~-~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +++.+..|+..|..++...  ++...++..|+++.|+.+|.+++ +.+|..|+|+|++++..++..+..+++.|+++.|+
T Consensus        87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~  166 (528)
T 4b8j_A           87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence            5677788999998886644  56788999999999999999876 99999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNENASDCSVVDKLG  226 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G  226 (392)
                      .+|.+ ++..++..|+|+|++++.+.+.....+...|+++.|+.+| .+.+..++..|+|+|++|+...+.. ......|
T Consensus       167 ~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~  244 (528)
T 4b8j_A          167 KLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRP  244 (528)
T ss_dssp             HHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTT
T ss_pred             HHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHH
Confidence            99887 5889999999999999998888888888999999999999 6678999999999999999865433 3445589


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHH
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAA  294 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~  294 (392)
                      +++.|+.+|.+++..++..++.+|.+|+.+.+......+ .+....|..+|.           .-+..|...+.+....+
T Consensus       245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  324 (528)
T 4b8j_A          245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI  324 (528)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999987653211110 122333333332           22333433344433333


Q ss_pred             HHHHHHHHHHHHHHhCC-CccccccceeeccC
Q 016280          295 REERHLVDSLWNACYNE-PSSLRDKGLLVLPG  325 (392)
Q Consensus       295 ~ee~~~~~~L~~~~f~~-~~~~~~~~~~~~~~  325 (392)
                      .+ ...+..|+..+... ...+|++++|+|..
T Consensus       325 ~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~n  355 (528)
T 4b8j_A          325 ID-HQALPCLLSLLTQNLKKSIKKEACWTISN  355 (528)
T ss_dssp             HT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            33 24577788887777 78999999998864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.81  E-value=3.2e-18  Score=176.46  Aligned_cols=253  Identities=11%  Similarity=0.086  Sum_probs=201.6

Q ss_pred             CHHHHHHHHHHHHHhhcCC--CChHHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESI--DMANDLHSIGGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i--DnA~d~~~lGgl~~Ll~lL~s~-~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +++.+..++..|..++...  ++...+++.|+++.|+.+|.++ ++.+|..|+|+|++++..++..+..+++.|+++.|+
T Consensus       100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv  179 (530)
T 1wa5_B          100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI  179 (530)
T ss_dssp             SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence            5677888999999997753  4457788999999999999997 899999999999999999998999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF  227 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~  227 (392)
                      .+|.+ .+..+|..|+|+|++++.+.+.....+...|+++.|+.+|.+.+..++..|+|+|++|+.............|+
T Consensus       180 ~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~  258 (530)
T 1wa5_B          180 QLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA  258 (530)
T ss_dssp             HHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred             HHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence            99986 58899999999999999988878888889999999999999999999999999999999765344445667899


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHH-----------HHHHhhhcCCChhhHHHHH
Q 016280          228 PRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLL-----------GERIKGISLMSPEDLGAAR  295 (392)
Q Consensus       228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L-----------~~~~~~i~~~~~ed~~~~~  295 (392)
                      ++.|+.+|.+++..++..++.+|.+|+.+.+......+ .+....|..+|           -.-+..|...+.+....+.
T Consensus       259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  338 (530)
T 1wa5_B          259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  338 (530)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999987653211110 12223333332           2223334333344333333


Q ss_pred             HHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          296 EERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       296 ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      +. .++..|+..+......+|++++|+|..
T Consensus       339 ~~-~~l~~L~~lL~~~~~~vr~~A~~aL~~  367 (530)
T 1wa5_B          339 NA-GVLPALRLLLSSPKENIKKEACWTISN  367 (530)
T ss_dssp             HT-THHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             Hc-chHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            32 567788888877788899999998864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.81  E-value=4.6e-19  Score=176.28  Aligned_cols=191  Identities=13%  Similarity=0.133  Sum_probs=169.9

Q ss_pred             CHHHHHHHHHHHHHhhcC--CCChHHHHHcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHH
Q 016280           71 TPQDIEDMLDELQEHVES--IDMANDLHSIGGLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPL  146 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~--iDnA~d~~~lGgl~~Ll~l-L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~L  146 (392)
                      +++-++.+...|.++...  .+|...+.+.||+++|+.+ +.+.+.++++.|+.+|.+++..++..+..+. ..|+++.|
T Consensus       140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L  219 (354)
T 3nmw_A          140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL  219 (354)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH
Confidence            556778888889888864  4577888999999999997 4678899999999999999997777787787 68999999


Q ss_pred             HHhhCCCCCH---HHHHHHHHHHHHhhc---CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280          147 LSNFASDPDV---TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS  220 (392)
Q Consensus       147 l~LL~s~~~~---~vr~kAl~ALS~lvR---~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~  220 (392)
                      +.+|.+..+.   .++..|+++|++++.   +++.....+++.||++.|+.+|.+.+..+++.|+++|++|+..++..+.
T Consensus       220 v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~  299 (354)
T 3nmw_A          220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE  299 (354)
T ss_dssp             HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999865433   689999999999987   6778888899999999999999999999999999999999977788899


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280          221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  261 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~  261 (392)
                      .+.+.|+++.|+.||.+++..+++.|+.+|.+|+.+.+...
T Consensus       300 ~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999988543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.80  E-value=1.3e-18  Score=189.04  Aligned_cols=228  Identities=15%  Similarity=0.080  Sum_probs=177.7

Q ss_pred             HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC
Q 016280           93 NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH  172 (392)
Q Consensus        93 ~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~  172 (392)
                      ..+++.|++++|+.+|.++++.+|+.|+|+|++++.+ +.++..|++.|++++|+.+|.+. +..+|..|+|||++++++
T Consensus       489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~  566 (810)
T 3now_A          489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGIT  566 (810)
T ss_dssp             HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcC
Confidence            5677899999999999999999999999999999975 66999999999999999999874 678999999999999986


Q ss_pred             CcccHHHH---HHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280          173 NKPGIEAF---RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR  248 (392)
Q Consensus       173 ~~~~~~~f---~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~  248 (392)
                      ..+. ..|   ...|+++.|+.+|.++ +...+..|+++|++|+..++..++.+++.|+++.|+.||.+++..+|+.|+.
T Consensus       567 ~~p~-~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~  645 (810)
T 3now_A          567 INPE-VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ  645 (810)
T ss_dssp             SCHH-HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             CChh-hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            5442 222   1357999999999876 4455678999999999877777889999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCcccc
Q 016280          249 GLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR  316 (392)
Q Consensus       249 aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~  316 (392)
                      +|++|+.+......-.. .+....|..++.           .-+..|...+.+...++.+.-..+..|...+-+....+|
T Consensus       646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq  725 (810)
T 3now_A          646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ  725 (810)
T ss_dssp             HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence            99999986542111000 122222222222           222333323445555555522577899999999999999


Q ss_pred             ccceeec
Q 016280          317 DKGLLVL  323 (392)
Q Consensus       317 ~~~~~~~  323 (392)
                      ++|+|+|
T Consensus       726 ~~A~~aL  732 (810)
T 3now_A          726 HRGIVII  732 (810)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999988

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.80  E-value=1.1e-18  Score=179.13  Aligned_cols=191  Identities=12%  Similarity=0.124  Sum_probs=169.2

Q ss_pred             CHHHHHHHHHHHHHhhcC--CCChHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHH
Q 016280           71 TPQDIEDMLDELQEHVES--IDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPL  146 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~--iDnA~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~L  146 (392)
                      +++-++.+...|.++...  .+|...+.+.||+++|+.+| .+.+..+++.|+.+|++++..++..+..|. ..|+++.|
T Consensus       256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L  335 (458)
T 3nmz_A          256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL  335 (458)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence            567778888999998764  35678888999999999975 667899999999999999997777788887 78999999


Q ss_pred             HHhhCCCCCH---HHHHHHHHHHHHhhc---CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280          147 LSNFASDPDV---TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS  220 (392)
Q Consensus       147 l~LL~s~~~~---~vr~kAl~ALS~lvR---~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~  220 (392)
                      +.+|.+..+.   .++..|+|+|++++.   +++.....+++.||++.|+.+|.+.+..+++.|+|+|++|+..+++.+.
T Consensus       336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~  415 (458)
T 3nmz_A          336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE  415 (458)
T ss_dssp             HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999875443   589999999999986   6778888899999999999999999999999999999999977788899


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280          221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS  261 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~  261 (392)
                      .+.+.|+++.|+.+|.+++..+++.|+.+|.+|+.+++...
T Consensus       416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence            99999999999999999999999999999999999987543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.78  E-value=3e-18  Score=175.03  Aligned_cols=248  Identities=13%  Similarity=0.120  Sum_probs=186.6

Q ss_pred             CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      +++-.+.|...|.++... -+|...+++.||+++|+.+|. +++++++..|+|+|++++.+ +..+..+++ |++++|+.
T Consensus        57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~  134 (457)
T 1xm9_A           57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLAD  134 (457)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHH
Confidence            456677899999999875 688888999999999999998 88999999999999999998 778888999 99999999


Q ss_pred             hhC--------CC-------CCHHHHHHHHHHHHHhhcCCcccHHHHHHc-ChHHHHHHhhcC-----------------
Q 016280          149 NFA--------SD-------PDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDALGS-----------------  195 (392)
Q Consensus       149 LL~--------s~-------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~-gGl~~L~~lL~s-----------------  195 (392)
                      +|.        +.       .+..+++.|+|||++++++ +.....+.+. |+++.|+.+|++                 
T Consensus       135 ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~  213 (457)
T 1xm9_A          135 RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC  213 (457)
T ss_dssp             HTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHH
T ss_pred             HHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHH
Confidence            993        22       3567888999999999987 6777778777 999998877753                 


Q ss_pred             --------------------------------------------------------------------------------
Q 016280          196 --------------------------------------------------------------------------------  195 (392)
Q Consensus       196 --------------------------------------------------------------------------------  195 (392)
                                                                                                      
T Consensus       214 ~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~  293 (457)
T 1xm9_A          214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG  293 (457)
T ss_dssp             HHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred             HHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence                                                                                            


Q ss_pred             --CCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hh
Q 016280          196 --ESVKFQRKALNLIQYLLNENASD-----CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AE  267 (392)
Q Consensus       196 --~d~kl~~kA~~lLs~L~~~~~~~-----~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~  267 (392)
                        +++.+++.|+|+|++|+.++...     +..+.+.|+++.|+.||.+++.+++..|+.+|.+++.+..-  ...+ .+
T Consensus       294 ~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~--~~~i~~~  371 (457)
T 1xm9_A          294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQ  371 (457)
T ss_dssp             HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--HHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--HHHHHHh
Confidence              12456777899999999765432     22344689999999999999999999999999999986531  1110 22


Q ss_pred             hHHHHHHHHHHH-----------------HhhhcCCChhhHHHHHHHHHHHHHHHHHHhCC-Cccccccceeecc
Q 016280          268 DNEKLKQLLGER-----------------IKGISLMSPEDLGAAREERHLVDSLWNACYNE-PSSLRDKGLLVLP  324 (392)
Q Consensus       268 ~~~~L~~~L~~~-----------------~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~-~~~~~~~~~~~~~  324 (392)
                      ....|.++|...                 +..|-..+.+. .....+-..++.|.+.+.++ ...+++++.|+|.
T Consensus       372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~  445 (457)
T 1xm9_A          372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS  445 (457)
T ss_dssp             THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            333333333321                 11121223332 23333446788888888888 7889999998885

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.78  E-value=1.2e-17  Score=166.36  Aligned_cols=187  Identities=20%  Similarity=0.235  Sum_probs=167.9

Q ss_pred             CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +.+-+..++..|.+++... ++...+...|+++.|+.+|.+++..+|..|+++|++++.+++...+.+++.|+++.|+.+
T Consensus       205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  284 (450)
T 2jdq_A          205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL  284 (450)
T ss_dssp             CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence            4566778889999998854 556778889999999999999999999999999999999999888888999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCch
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFP  228 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-~~~~~~~l~~~G~v  228 (392)
                      +.+ ++..+|..|+++|++++++++.....++..|+++.|+.+|.+++.++|..|+|+|++|+.. .+.....+.+.|++
T Consensus       285 l~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i  363 (450)
T 2jdq_A          285 LSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI  363 (450)
T ss_dssp             TTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred             HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence            886 5789999999999999998887778888899999999999999999999999999999976 45566778889999


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.|+.++.+++..+++.|+.+|.+++...+
T Consensus       364 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          364 KPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            999999999999999999999999987654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.76  E-value=7.4e-18  Score=158.48  Aligned_cols=182  Identities=14%  Similarity=0.180  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280           73 QDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        73 e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      +.+..+...|..++. +.++...+++.||+|+|+.+|.++++++|..|+|+|.+++..++..+..|.+.|+|++|+++|.
T Consensus        25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~  104 (233)
T 3tt9_A           25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLK  104 (233)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHc
Confidence            445567778888884 5567888999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc----------------CCCHHHHHHHHHHHHHHhhcC
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----------------SESVKFQRKALNLIQYLLNEN  215 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~----------------s~d~kl~~kA~~lLs~L~~~~  215 (392)
                      +..+..++..|+.||.+|..+ +.....+.. +|++.|+.++.                +.+..++..|+.+|++|+..+
T Consensus       105 ~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~  182 (233)
T 3tt9_A          105 QTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG  182 (233)
T ss_dssp             HCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC
T ss_pred             cCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC
Confidence            556789999999899988754 455666654 68999998763                236799999999999999877


Q ss_pred             CcchHHHHhc-CchHHHHHhhcC------CChHHHHHHHHHHHHHHcC
Q 016280          216 ASDCSVVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELARE  256 (392)
Q Consensus       216 ~~~~~~l~~~-G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~  256 (392)
                      ++.+..+.+. |+|+.|+.+++.      .+...+|.|+.+|.+|+-.
T Consensus       183 ~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          183 ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            7888888876 789999999984      3667999999999999754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.76  E-value=6.2e-17  Score=170.38  Aligned_cols=184  Identities=13%  Similarity=0.169  Sum_probs=159.5

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~  148 (392)
                      +++.+..|...|..++. +-++...+++.||+++|+.+|.+++..+|..|+|+|++++.. |+..+..|++.|+|++|+.
T Consensus        61 ~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~  140 (584)
T 3l6x_A           61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR  140 (584)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHH
Confidence            45666778889999885 678889999999999999999999999999999999999985 7999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc------------------CCCHHHHHHHHHHHHH
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG------------------SESVKFQRKALNLIQY  210 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~------------------s~d~kl~~kA~~lLs~  210 (392)
                      +|.+..+..++..|++||.+|.. ++.....++ .+|++.|++++.                  +.+..++..|+++|++
T Consensus       141 LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~N  218 (584)
T 3l6x_A          141 LLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN  218 (584)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHH
Confidence            99976678999999999999987 456666676 578999999871                  2368999999999999


Q ss_pred             HhhcCCcchHHHHhc-CchHHHHHhhcC------CChHHHHHHHHHHHHHHcC
Q 016280          211 LLNENASDCSVVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELARE  256 (392)
Q Consensus       211 L~~~~~~~~~~l~~~-G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~  256 (392)
                      |+..++..+..+.+. |+++.|+.+|++      .+...+|.|+.+|.+|+..
T Consensus       219 Ls~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          219 VSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             HTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence            998776768888875 778899999874      5678999999999999865

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.73  E-value=1.8e-16  Score=148.98  Aligned_cols=200  Identities=17%  Similarity=0.137  Sum_probs=157.7

Q ss_pred             ChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280          100 GLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       100 gl~~Ll~lL~s~~~--~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      .+++++.+|.++++  .++..|++.|.+++.+++..+..|.+.|+||+|+++|.+ .++.++..|+|||.+++.+++.+.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            47999999999887  999999999999999999999999999999999999988 578999999999999999888889


Q ss_pred             HHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc----------------CCCh
Q 016280          178 EAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS----------------SEDP  240 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~----------------~~d~  240 (392)
                      ..+...||++.|+++|. +.+..+++.|+.+|.+|... +..+..+.+. .++.|+.++.                ..+.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998 57899999999999999864 5566677764 5888988763                1367


Q ss_pred             HHHHHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280          241 DVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN  310 (392)
Q Consensus       241 ~v~E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~  310 (392)
                      ++++.|..+|.+|+..++.   .+++| .+.-..|...++..+..-+   .++.  .+|  .-|-.|.+.||.
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~---~~~k--~~E--n~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQ---PDDK--ATE--NCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTC---TTCH--HHH--HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhccc---chhH--HHH--HHHHHHHHHHhh
Confidence            9999999999999987642   23334 3333555555554443311   1221  111  235677887774

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.72  E-value=8.3e-17  Score=174.83  Aligned_cols=228  Identities=15%  Similarity=0.120  Sum_probs=179.5

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHH-HHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQ-LVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~-~vl~~g~l~~Ll~  148 (392)
                      +++-++.+...|.++..+-++...+++.|++++|+.+|.+++..+|..|+|+|++++.+ +|..-- .....|++++|+.
T Consensus       508 s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~  587 (810)
T 3now_A          508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN  587 (810)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH
Confidence            56778899999999998888999999999999999999999999999999999999874 553310 0012369999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh-cCc
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK-LGF  227 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~-~G~  227 (392)
                      +|.++.+...+..|++||++++.+.+.....++..||++.|+.+|.+++..+|+.|+++|++|+.+ +..+..+++ .|.
T Consensus       588 LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~  666 (810)
T 3now_A          588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDR  666 (810)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCc
Confidence            998765656677899999999998877788899999999999999999999999999999999975 455556665 799


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhh--hhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 016280          228 PRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLA--EDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLW  305 (392)
Q Consensus       228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~--~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~  305 (392)
                      ++.|+.|+.+++..+|+.|+.+|.+|+.+++......+.  +....|.++|.+       .   | ..++  ...++.|.
T Consensus       667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-------~---d-~~vq--~~A~~aL~  733 (810)
T 3now_A          667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-------P---S-PAVQ--HRGIVIIL  733 (810)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-------S---S-HHHH--HHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-------C---C-HHHH--HHHHHHHH
Confidence            999999999999999999999999999965533222211  233333333331       1   1 1222  34688888


Q ss_pred             HHHhCCC
Q 016280          306 NACYNEP  312 (392)
Q Consensus       306 ~~~f~~~  312 (392)
                      +.+.+++
T Consensus       734 NL~~~s~  740 (810)
T 3now_A          734 NMINAGE  740 (810)
T ss_dssp             HHHTTCH
T ss_pred             HHHhCCH
Confidence            8887654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.71  E-value=2.9e-16  Score=159.91  Aligned_cols=186  Identities=12%  Similarity=0.103  Sum_probs=168.4

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +++.+..+...|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.++
T Consensus        73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll  152 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL  152 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH
Confidence            56778889999999998888999999999999999999999999999999999999998887888899999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      .+ .+..++..++.+|.+++.+++.....+...||++.|+.+|.+.+ ..++..++.+|.+|+. ++..+..+.+.|+++
T Consensus       153 ~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~  230 (529)
T 1jdh_A          153 NK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  230 (529)
T ss_dssp             GC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHH
T ss_pred             hc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence            87 57899999999999999988888999999999999999998754 6677778889999986 567788899999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .|+.++.+++..+++.++.+|.+|+.+.+
T Consensus       231 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          231 ALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            99999999999999999999999988764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.71  E-value=1.5e-16  Score=154.54  Aligned_cols=146  Identities=12%  Similarity=0.153  Sum_probs=133.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCC-ChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESID-MANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iD-nA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      +++-++.|+..|..++.+-+ +...+++.||+++|+.+|.+ ++..+|..|+|+|++++.+++..++.|++.|+++.|+.
T Consensus        95 ~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~  174 (296)
T 1xqr_A           95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR  174 (296)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH
Confidence            56778899999999998654 56778899999999999985 58999999999999999999999889999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS  217 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~  217 (392)
                      +|.+ .+..++.+|+|||++++.+++.....+++.|+++.|+.+|.+++.+++..|+.+|.+|+...+.
T Consensus       175 lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~  242 (296)
T 1xqr_A          175 AMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  242 (296)
T ss_dssp             HHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             HHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence            9987 5899999999999999999888899999999999999999999999999999999999986433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.71  E-value=8.8e-16  Score=161.65  Aligned_cols=203  Identities=15%  Similarity=0.105  Sum_probs=164.0

Q ss_pred             HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC-Ccc
Q 016280           97 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH-NKP  175 (392)
Q Consensus        97 ~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~-~~~  175 (392)
                      ..+++++|+.+|.++++.++..|+++|.+++..++..+..|.+.|+||+||.+|.+ .+..++..|+|||.+|+.+ ++.
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHH
Confidence            46789999999999999999999999999999889999999999999999999987 5889999999999999986 578


Q ss_pred             cHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc------------------
Q 016280          176 GIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS------------------  236 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~------------------  236 (392)
                      +...++..||++.|+.+|.+ .+..++..|+++|.+|+. ++..+..+++ +.++.|+.++.                  
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            89999999999999999997 678999999999999987 4677777776 46999999871                  


Q ss_pred             CCChHHHHHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280          237 SEDPDVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN  310 (392)
Q Consensus       237 ~~d~~v~E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~  310 (392)
                      ..+.++++.|..+|.+|+.+++.   .+.++ .+....|...|+..+..-..   ++  ...|  ..|..|++.||.
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~---~~--~~~e--nav~aL~NLs~~  271 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDS---DS--KLVE--NCVCLLRNLSYQ  271 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCC---SC--HHHH--HHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCc---cH--HHHH--HHHHHHHHhhcc
Confidence            23679999999999999998753   23444 34444555555544322211   11  1111  357899999987

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.69  E-value=9e-16  Score=162.40  Aligned_cols=187  Identities=12%  Similarity=0.099  Sum_probs=169.7

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      .+++.+..+...|..+....++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus        69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l  148 (644)
T 2z6h_A           69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  148 (644)
T ss_dssp             CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence            35677888999999999988889999999999999999999999999999999999999887788888999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      |.+. +..++..++.+|++++.+++.....+...||++.|+.+|.+.+ .+++..++.+|.+|+. .+..+..+++.|++
T Consensus       149 L~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l  226 (644)
T 2z6h_A          149 LNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM  226 (644)
T ss_dssp             GGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHH
T ss_pred             HCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCH
Confidence            9874 6788889999999999888888899999999999999998764 7888899999999985 57778899999999


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.|+.++.+.+..+++.++.+|.+|+.+.+
T Consensus       227 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  256 (644)
T 2z6h_A          227 QALGLHLTDPSQRLVQNCLWTLRNLSDAAT  256 (644)
T ss_dssp             HHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence            999999999999999999999999988654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.68  E-value=5.8e-16  Score=157.61  Aligned_cols=252  Identities=15%  Similarity=0.171  Sum_probs=174.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..++..|..++...++ ...+.+.|+++.|+.+|.+++..++..++.+|++++..|+..+..+.+.|+++.|+.+
T Consensus       114 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l  193 (529)
T 1jdh_A          114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI  193 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            456678899999999887544 5566689999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHH---------------------------------------HH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA---------------------------------------LR  190 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~---------------------------------------L~  190 (392)
                      +.+..+..++..+..+|.+++. ++.....+...|+++.                                       |+
T Consensus       194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~  272 (529)
T 1jdh_A          194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV  272 (529)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHH
Confidence            8866555566666666666664 3344555555555554                                       44


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC--CChHHHHHHHHHHHHHHcCCChh--hhhhh-
Q 016280          191 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLLELAREKADG--SAIKL-  265 (392)
Q Consensus       191 ~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~--~d~~v~E~aL~aL~~L~~~~~~~--~~~~~-  265 (392)
                      ++|.+++..++..|+++|++|+..++..+..+.+.|+++.|+.+|.+  ++..+++.|+.+|.+|+.+.+..  .+..+ 
T Consensus       273 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~  352 (529)
T 1jdh_A          273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR  352 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            55555667777788888888877666678888899999999999975  34799999999999998875431  00000 


Q ss_pred             -hhhHHHHHHHHH------------HHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          266 -AEDNEKLKQLLG------------ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       266 -~~~~~~L~~~L~------------~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                       .+....|.++|.            .-+..+.. +.+....+.+. .++..|+..+-.....+|++++|++..
T Consensus       353 ~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHT-THHHHHHHHHHHHHHHHC---------
T ss_pred             HcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHc-CCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence             122233333222            12223332 23333444433 567888887777778999999998875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.66  E-value=2.7e-15  Score=162.98  Aligned_cols=187  Identities=12%  Similarity=0.105  Sum_probs=169.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      .+++.+..++..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus       205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l  284 (780)
T 2z6g_A          205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  284 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence            36778889999999998888888899999999999999999999999999999999999988888889899999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      |.+ .+..++..++.+|.+++.+++.....+...||++.|+.+|.+.+ ..++..++.+|.+|+. .+..+..+++.|++
T Consensus       285 L~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l  362 (780)
T 2z6g_A          285 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM  362 (780)
T ss_dssp             GGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH
T ss_pred             Hhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH
Confidence            987 57889999999999999888888999999999999999998765 5667788899999986 56778889999999


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.|+.++.+.+..+++.|+.+|.+|+....
T Consensus       363 ~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          363 QALGLHLTDPSQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             HHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence            999999999999999999999999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.65  E-value=6.3e-15  Score=155.90  Aligned_cols=252  Identities=15%  Similarity=0.149  Sum_probs=183.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..++..|..++...+. ...+.+.|+++.|+.+|.+++..++..++.+|++++..++..+..+.+.|+++.|+.+
T Consensus       111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l  190 (644)
T 2z6h_A          111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI  190 (644)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence            456778899999999887544 4566689999999999999999999999999999999899999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-----------------------------------
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-----------------------------------  194 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-----------------------------------  194 (392)
                      +.+.....++..++.+|.+++. ++.....++..|+++.|+.++.                                   
T Consensus       191 L~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv  269 (644)
T 2z6h_A          191 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV  269 (644)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHH
Confidence            9887667788888888888885 4556777777777777666554                                   


Q ss_pred             ----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCCh--hhhh-h-
Q 016280          195 ----SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREKAD--GSAI-K-  264 (392)
Q Consensus       195 ----s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~~--~~~~-~-  264 (392)
                          +.+..++..|+++|.+|+..++..+..+.+.|+++.|+.+|.+.  ...+++.|+.+|.+|+.+.+.  .... . 
T Consensus       270 ~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~  349 (644)
T 2z6h_A          270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR  349 (644)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence                45667777777777777766666678888999999999999863  379999999999999876542  1110 0 


Q ss_pred             hhhhHHHHHHHHHH------------HHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280          265 LAEDNEKLKQLLGE------------RIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG  325 (392)
Q Consensus       265 ~~~~~~~L~~~L~~------------~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~  325 (392)
                      ..+....|.++|.+            -+..|.. +.+....+.+. ..+..|...+......+|+++.|++..
T Consensus       350 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~-~~~~~~~i~~~-~~i~~Lv~lL~~~~~~vr~~a~~al~n  420 (644)
T 2z6h_A          350 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQ  420 (644)
T ss_dssp             HTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHT-THHHHHHHHHHHHHHHHTTC-------
T ss_pred             HccChHHHHHHhCccCchHHHHHHHHHHHHHcc-CHHHHHHHHHc-CCHHHHHHHHhccchhhhhHhhhcccc
Confidence            01233333333331            1223322 23333444443 678888888888888999999999886

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.55  E-value=3.7e-13  Score=146.14  Aligned_cols=249  Identities=14%  Similarity=0.122  Sum_probs=188.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..++..|..++...++. ..+.+.|+++.|+.+|.+++..++..|+.+|..++..|+..+..+.+.|+++.|+.+
T Consensus       247 ~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~l  326 (780)
T 2z6g_A          247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI  326 (780)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence            4667788999999999876554 455579999999999999999999999999999999899999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.+.....++..++.+|.+++. ++.....++..|+++.|+.++.+.+..++..|+++|.+|+......   ....++++
T Consensus       327 L~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~  402 (780)
T 2z6g_A          327 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLG  402 (780)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHH
Confidence            9887677778888999999986 4567788889999999999999999999999999999999765332   12247899


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHH-------------HHhhhcCCChhh--H-H
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGE-------------RIKGISLMSPED--L-G  292 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~-------------~~~~i~~~~~ed--~-~  292 (392)
                      .|+.+|.+.+..+++.|+.+|.+|+.+.+......+ .+....|.++|.+             -+..|...+.+.  . .
T Consensus       403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~  482 (780)
T 2z6g_A          403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN  482 (780)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            999999999999999999999999988753211100 2333444444433             122232222221  0 1


Q ss_pred             HHHHHHHHHHHHHHHHhCCCc-cccccceeecc
Q 016280          293 AAREERHLVDSLWNACYNEPS-SLRDKGLLVLP  324 (392)
Q Consensus       293 ~~~ee~~~~~~L~~~~f~~~~-~~~~~~~~~~~  324 (392)
                      .+.+. ..+..|...+-.... .+|++++|+|.
T Consensus       483 ~v~~~-~~l~~L~~lL~~~~~~~v~~~A~~aL~  514 (780)
T 2z6g_A          483 AVRLH-YGLPVVVKLLHPPSHWPLIKATVGLIR  514 (780)
T ss_dssp             HHHHT-TCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            22221 335666666665554 78888888765

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.42  E-value=3.5e-12  Score=137.13  Aligned_cols=165  Identities=14%  Similarity=0.192  Sum_probs=134.4

Q ss_pred             hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCH--HHHHHHHHHHHHh
Q 016280           92 ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV--TVRTKALGAISSL  169 (392)
Q Consensus        92 A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~--~vr~kAl~ALS~l  169 (392)
                      ...+++.|++++|+.++.++++.+|..|+|+|++++.+ +.++..+++.|++++|+.+|.+.++.  .+|..|+.||+++
T Consensus       450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            34566789999999999999999999999999999966 88999999999999999999876443  2899999999999


Q ss_pred             hcCCcccHHHHH---HcChHHHHHHhhcC-CCH-------------HHHHHHHHHHHHHhhcCC----cchHHHHhc-Cc
Q 016280          170 IRHNKPGIEAFR---LANGYAALRDALGS-ESV-------------KFQRKALNLIQYLLNENA----SDCSVVDKL-GF  227 (392)
Q Consensus       170 vR~~~~~~~~f~---~~gGl~~L~~lL~s-~d~-------------kl~~kA~~lLs~L~~~~~----~~~~~l~~~-G~  227 (392)
                      .-...+.. .|-   ..|+++.|+.+|.. +..             .-+..|+.+|.+|+....    +.+..+++. |+
T Consensus       529 lis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga  607 (778)
T 3opb_A          529 LIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY  607 (778)
T ss_dssp             HHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred             HhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence            86544332 332   14999999999983 221             237789999999998642    235667875 99


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          228 PRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ++.|+.+|.+++..+|..|+.+|++|+.+..
T Consensus       608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e  638 (778)
T 3opb_A          608 WSTIENLMLDENVPLQRSTLELISNMMSHPL  638 (778)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence            9999999999999999999999999998554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.6e-11  Score=132.15  Aligned_cols=187  Identities=18%  Similarity=0.215  Sum_probs=148.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHH---HHHHHHHHHHHHhh-CCHHHHHHHHH---cCC
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHAN---IRAKAGEVVTTIVQ-NNPRSQQLVME---ANG  142 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~---IR~~Aa~vLg~iaq-NNp~~Q~~vl~---~g~  142 (392)
                      .++.-++.+...|..++.+-++...+++.||+++|+.+|.+....   +|..|+.+|+++.- .||..  .|-.   .|+
T Consensus       469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~a  546 (778)
T 3opb_A          469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNA  546 (778)
T ss_dssp             SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccc
Confidence            367788899999999999999999999999999999999886544   89999999999984 56754  1211   389


Q ss_pred             HHHHHHhhCCCCCH-------------HHHHHHHHHHHHhhcCCc----ccHHHHHHc-ChHHHHHHhhcCCCHHHHHHH
Q 016280          143 LEPLLSNFASDPDV-------------TVRTKALGAISSLIRHNK----PGIEAFRLA-NGYAALRDALGSESVKFQRKA  204 (392)
Q Consensus       143 l~~Ll~LL~s~~~~-------------~vr~kAl~ALS~lvR~~~----~~~~~f~~~-gGl~~L~~lL~s~d~kl~~kA  204 (392)
                      +++|+.+|..++..             --+..|+.||.||+....    .....++.. |+++.|..+|.+++..+|+.|
T Consensus       547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA  626 (778)
T 3opb_A          547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST  626 (778)
T ss_dssp             HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence            99999999832111             237799999999998752    235666774 999999999999999999999


Q ss_pred             HHHHHHHhhcCCcch-HHHHhcC------chHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          205 LNLIQYLLNENASDC-SVVDKLG------FPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       205 ~~lLs~L~~~~~~~~-~~l~~~G------~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      ++++++|+. ++..+ +.+...+      -++.|+.|+.++|.++|..|..+|.++++..+.
T Consensus       627 ~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~  687 (778)
T 3opb_A          627 LELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL  687 (778)
T ss_dssp             HHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence            999999996 44443 2343222      377899999999999999999999999877664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.31  E-value=5.4e-11  Score=125.28  Aligned_cols=188  Identities=18%  Similarity=0.200  Sum_probs=155.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCC------------------ChHHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016280           69 GVTPQDIEDMLDELQEHVESID------------------MANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN  129 (392)
Q Consensus        69 ~~~~e~~~~aL~~L~~lve~iD------------------nA~d~~-~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN  129 (392)
                      ..+.|-...+|+.|..+....+                  ++..|. +.++++.|+.+|++.+-.+|..|..+|..++.+
T Consensus        73 ~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~  152 (651)
T 3grl_A           73 RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ  152 (651)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc
Confidence            3466667778888877666443                  233443 458899999999999999999999999999999


Q ss_pred             CHH-HHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC----HHHHHH
Q 016280          130 NPR-SQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES----VKFQRK  203 (392)
Q Consensus       130 Np~-~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d----~kl~~k  203 (392)
                      +|. +|+.|+.. +|++.|+.+|.. ..+.+|..|+..|..++++++..++.+.-.||++.|..++..+.    ..+..+
T Consensus       153 r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D  231 (651)
T 3grl_A          153 LGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVED  231 (651)
T ss_dssp             SHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred             CcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence            998 99999976 999999999886 47899999999999999999988888888999999999998754    488899


Q ss_pred             HHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChH------H-H--HHHHHHHHHHHcCC
Q 016280          204 ALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD------V-R--EAALRGLLELAREK  257 (392)
Q Consensus       204 A~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~------v-~--E~aL~aL~~L~~~~  257 (392)
                      ++.+|.+|++.++.++..|.+.|.++.|..+|..++..      . .  -.++.++.-++..+
T Consensus       232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~  294 (651)
T 3grl_A          232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN  294 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999854321      1 1  22555666666654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.18  E-value=8e-11  Score=126.10  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=134.0

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC-cccH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN-KPGI  177 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~-~~~~  177 (392)
                      ..+.|++..|+|+++..|..||++|+++++ ++..+..+++.|++.+++.-+..|++.+||..|++||.+|+.+. ....
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            357788899999999999999999999998 68888999999999998877667789999999999999998764 4455


Q ss_pred             HHHHHcChHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc
Q 016280          178 EAFRLANGYAALRDALGSES---------------------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS  236 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~d---------------------~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~  236 (392)
                      ..++..|+++.|..++.+..                     ..+...++.+|.+|+..+......+...+.++.|+.+|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            66778999999998875321                     123345778899999776666778888899999999875


Q ss_pred             CC---ChHHHHHHHHHHHHHHcCCChhhh
Q 016280          237 SE---DPDVREAALRGLLELAREKADGSA  262 (392)
Q Consensus       237 ~~---d~~v~E~aL~aL~~L~~~~~~~~~  262 (392)
                      +.   ..+++..|+.+|..++.+++.+..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~  221 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQ  221 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHH
Confidence            32   367999999999999999986544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.03  E-value=1.8e-09  Score=113.70  Aligned_cols=188  Identities=15%  Similarity=0.171  Sum_probs=153.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCC--ChHHHHHc-CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESID--MANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iD--nA~d~~~l-Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +...+..++..|.-++.+-.  +-..+... +|++.|+.+|.++...||..|.-+|..++.+|+.+|+.|.-.|++++|+
T Consensus       135 df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf  214 (651)
T 3grl_A          135 DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL  214 (651)
T ss_dssp             CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence            44556677777777776543  34556644 9999999999999999999999999999999999999888889999999


Q ss_pred             HhhCCCC---CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCH-------HHHH--HHHHHHHHHhhcC
Q 016280          148 SNFASDP---DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV-------KFQR--KALNLIQYLLNEN  215 (392)
Q Consensus       148 ~LL~s~~---~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~-------kl~~--kA~~lLs~L~~~~  215 (392)
                      .++..+.   .-.+...++..|.+++|+|+.++..|.+.|+++.|..+|..++.       ++.-  -+..+++-|+..+
T Consensus       215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~  294 (651)
T 3grl_A          215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN  294 (651)
T ss_dssp             HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence            9988643   23677899999999999999999999999999999999986432       2222  2556677776543


Q ss_pred             C------cchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCC
Q 016280          216 A------SDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREKA  258 (392)
Q Consensus       216 ~------~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .      .++..+.+.|+++.|+.++.+.  ...++..|+.++..+.++++
T Consensus       295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~  345 (651)
T 3grl_A          295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ  345 (651)
T ss_dssp             SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence            2      3466889999999999998865  56899999999999999997

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.01  E-value=8e-09  Score=92.93  Aligned_cols=118  Identities=24%  Similarity=0.229  Sum_probs=53.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  181 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~  181 (392)
                      +.|+.+|.++++.+|..|+++|+.+..           .++++.|+.+|.+ +++.+|..|+++|+.+..          
T Consensus        53 ~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------  110 (211)
T 3ltm_A           53 EPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------  110 (211)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------
Confidence            444444444455555555555544431           1234444444332 344455555555544321          


Q ss_pred             HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                       ...++.|+.+|.+++..+|..|+++|..+-.           ...++.|..++.+++..+|..++.+|..+
T Consensus       111 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A          111 -ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI  170 (211)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence             1234444555554555555555555544421           12344445555555555555555555544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.98  E-value=1.1e-08  Score=91.33  Aligned_cols=119  Identities=22%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      .+.++.+|+++++.+|..|+++|+.+..           ..+++.|+.+|. +++..+|..|+++|+.+..         
T Consensus        16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           16 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC---------
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC---------
Confidence            4555555555555555555555554432           123455555543 2345555555555554421         


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                        ..+++.|+.+|.+++..+|..|+++|..+..           ...++.|+.+|.+++..+|..|+.+|..+
T Consensus        75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  134 (201)
T 3ltj_A           75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI  134 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence              1344555555555555555555555554421           12344455555555555555555555554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.95  E-value=4.4e-08  Score=87.37  Aligned_cols=139  Identities=21%  Similarity=0.163  Sum_probs=114.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++..+..++..|..+-.          -+.++.|+.+|.++++.+|..|+++|+.+..           ..+++.|+.+|
T Consensus        27 ~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l   85 (201)
T 3ltj_A           27 SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKAL   85 (201)
T ss_dssp             CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHH
Confidence            44566677777765432          2568999999999999999999999998753           14678888887


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      .+ +++.+|..|+++|+.+..           ...++.|..+|.+++..+|..|+++|..+-.           ...++.
T Consensus        86 ~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~  142 (201)
T 3ltj_A           86 KD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEP  142 (201)
T ss_dssp             TC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHH
T ss_pred             cC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHH
Confidence            65 689999999999998742           2478889999999999999999999998842           346788


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHH
Q 016280          231 MLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      |+.++.+++..+|..|+.+|..+
T Consensus       143 L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          143 LIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.91  E-value=2.8e-08  Score=93.24  Aligned_cols=155  Identities=12%  Similarity=0.015  Sum_probs=111.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++..+..++..|..+-.          -+.++.|+.+|.++++.+|..|+++|+.+......+..      .++.|...+
T Consensus        36 ~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~------l~~~L~~~~   99 (280)
T 1oyz_A           36 NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMA   99 (280)
T ss_dssp             SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH------HHHHHHHHH
Confidence            44566677777776541          23578888999999999999999999988643221111      223333333


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      .++++..||..|+++|+.+..+++...     ...++.|..++.+++..+|..|+++|..+..           .+.++.
T Consensus       100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~  163 (280)
T 1oyz_A          100 LNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL  163 (280)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence            456788999999999999876554322     2357888888999999999999999887643           247888


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          231 MLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      |+.++.+++..+|..|+.+|..+..+.
T Consensus       164 L~~~l~d~~~~vr~~a~~aL~~~~~~~  190 (280)
T 1oyz_A          164 LINLLKDPNGDVRNWAAFAININKYDN  190 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhccCc
Confidence            999999999999999999998885443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.88  E-value=9.9e-08  Score=85.72  Aligned_cols=126  Identities=21%  Similarity=0.194  Sum_probs=94.2

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      +.++.|+.+|.++++.+|..|+++|+.+..           ..+++.|+.++. +++..||..|+++|+.+-  .     
T Consensus        81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~--~-----  141 (211)
T 3ltm_A           81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIG--D-----  141 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC--C-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHcC--C-----
Confidence            367888888888889999999999988753           246777888764 467889999999998873  1     


Q ss_pred             HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                          ...++.|..++.+++..+|..|+.+|..+-.           ..+++.|..++.+++..+|..|+.+|..+...+.
T Consensus       142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                2467788888888888899999888888732           2356778888888888899999998888766553

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.86  E-value=6.3e-08  Score=90.85  Aligned_cols=196  Identities=12%  Similarity=0.042  Sum_probs=132.0

Q ss_pred             HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280           96 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus        96 ~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      .+-+.++.|+.+|.++++.+|..|+++|+.+.  .+         .+++.|+.++.+ ++..+|..|+++|+.+..... 
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~-   86 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK-   86 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT-
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc-
Confidence            34578999999999999999999999999986  22         357788888775 588999999999998753322 


Q ss_pred             cHHHHHHcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          176 GIEAFRLANGYAALR-DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      ...     ..++.|. .++.+++..+|..|+++|..+...++...     ..+++.|+.++.+++..+|..|+.+|+.+.
T Consensus        87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            111     1344555 35678899999999999999985443222     245788999999999999999999999876


Q ss_pred             cCCC-hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          255 REKA-DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       255 ~~~~-~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      .... .....++.++...++...-..+..+...+          -+.+..|......+...+|..++++|-
T Consensus       157 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          157 DKATIPLLINLLKDPNGDVRNWAAFAININKYDN----------SDIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             --CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc----------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            5322 22223334555555554444444443111          133445555555555566666666553

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.82  E-value=1.3e-08  Score=108.90  Aligned_cols=184  Identities=14%  Similarity=0.027  Sum_probs=146.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll  147 (392)
                      .+++++..|+..|.+++++-.+..-+.+.|++.+++ .+|.+++.+||..|+++|++++.. .+.+...++..|++++|+
T Consensus        46 ~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~  125 (684)
T 4gmo_A           46 PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIE  125 (684)
T ss_dssp             SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHH
Confidence            467889999999999999877888899999999876 578899999999999999999986 578888899999999999


Q ss_pred             HhhCCC-------------CC-------HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC---CCHHHHHHH
Q 016280          148 SNFASD-------------PD-------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---ESVKFQRKA  204 (392)
Q Consensus       148 ~LL~s~-------------~~-------~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s---~d~kl~~kA  204 (392)
                      .++.+.             ..       ..+...++++|.+++.+...+...+...++++.|+.+|.+   ....++..|
T Consensus       126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a  205 (684)
T 4gmo_A          126 HAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEA  205 (684)
T ss_dssp             HHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred             HHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHH
Confidence            887531             01       1234467888999998888888888899999999998854   347899999


Q ss_pred             HHHHHHHhhcCCcchHHHHhcCchHH---HHHhhcCCChHHHHHHHHHHHHHH
Q 016280          205 LNLIQYLLNENASDCSVVDKLGFPRL---MLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       205 ~~lLs~L~~~~~~~~~~l~~~G~v~~---Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      +.+|+.|+.+++...+.+.+.|....   +..+.++ +...+..+..+|.++.
T Consensus       206 ~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          206 ISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            99999999988888888887775432   3333333 3344566777777763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.65  E-value=9.2e-07  Score=81.58  Aligned_cols=176  Identities=14%  Similarity=0.186  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCC-CC-hHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH
Q 016280           70 VTPQDIEDMLDELQEHVESI-DM-ANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP  145 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~i-Dn-A~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~  145 (392)
                      .+-.++..++..|..+++.. +. ..++.++  ++.|..+|. .++..+|..|+.+|+.++..- +.+...+-  ..++.
T Consensus        27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i--~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~  102 (242)
T 2qk2_A           27 KKWTLRKESLEVLEKLLTDHPKLENGEYGAL--VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPS  102 (242)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCCCCHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHH
Confidence            45678888999999888752 21 2223222  666778884 899999999999999999641 12222221  36888


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-Ccc-hHHHH
Q 016280          146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASD-CSVVD  223 (392)
Q Consensus       146 Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~-~~~-~~~l~  223 (392)
                      |+..+.. ++..||..|..||..++....  ..     .-++.|...|++++.++|..++.+|..++... +.. .....
T Consensus       103 ll~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l  174 (242)
T 2qk2_A          103 LLEKFKE-KKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL  174 (242)
T ss_dssp             HHHGGGC-CCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence            9988765 678999999999999987643  22     24667888899999999999999999977543 221 11122


Q ss_pred             hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                       ..+++.|+.+|.+.+..+|..|..+|+.++..-.
T Consensus       175 -~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          175 -KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             -HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence             2578999999999999999999999999886554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.59  E-value=1e-06  Score=92.31  Aligned_cols=176  Identities=17%  Similarity=0.200  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280           72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      +..+..|+..|..+. ..+.+..+     ++.+..+|.++++.||..|+++++.+...+|..   +-+.+.++.|..+|.
T Consensus       100 ~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~  170 (591)
T 2vgl_B          100 PLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA  170 (591)
T ss_dssp             HHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC
Confidence            344455666665543 23334443     466889999999999999999999999988753   223467888888876


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCccc---------HHHHHH----------------------------cChHHHHHHhhc
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPG---------IEAFRL----------------------------ANGYAALRDALG  194 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~---------~~~f~~----------------------------~gGl~~L~~lL~  194 (392)
                       |+++.|+..|+.+|+.++.+.+..         ...++.                            ...++.+..+++
T Consensus       171 -d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~  249 (591)
T 2vgl_B          171 -DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS  249 (591)
T ss_dssp             -CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC
T ss_pred             -CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc
Confidence             578999999999999999876532         111111                            134556666778


Q ss_pred             CCCHHHHHHHHHHHHHHhhc---CCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          195 SESVKFQRKALNLIQYLLNE---NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       195 s~d~kl~~kA~~lLs~L~~~---~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      +.+..++..|++++.++...   +++....+ -..+.+.|+.++. ++.++|..|+++|..++...+.
T Consensus       250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~  315 (591)
T 2vgl_B          250 HANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE  315 (591)
T ss_dssp             SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH
Confidence            88899999999999998742   23333322 2345677776664 7899999999999999876553

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.58  E-value=3.6e-06  Score=88.15  Aligned_cols=166  Identities=13%  Similarity=0.188  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280           72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      .+.+..++..+..+.-.-...     ..++..+++++.+++..+|..+...+..++..+|....     -++..|.+-|.
T Consensus        27 ~~~k~~~~~kli~~~~~G~d~-----~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~   96 (591)
T 2vgl_B           27 KEKRKEAVKKVIAAMTVGKDV-----SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCE   96 (591)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-----GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSS
T ss_pred             HHHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcC
Confidence            345555555555443322221     22577888999999999999999999999887765422     24566776666


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM  231 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L  231 (392)
                      + +++.+|..|+.+|+++.  .+.....     -++.+..++.++++.+|.+|+.++..+...+++   .+.+.++++.+
T Consensus        97 ~-~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l  165 (591)
T 2vgl_B           97 D-PNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSL  165 (591)
T ss_dssp             S-SSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHH
Confidence            5 68999999999999985  2322222     356789999999999999999999999986655   34456889999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          232 LHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       232 v~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..+|.++++.|+..|+.+|..++.+.+
T Consensus       166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          166 RDLIADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999876

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.49  E-value=2.7e-06  Score=92.18  Aligned_cols=246  Identities=15%  Similarity=0.091  Sum_probs=150.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHH-------cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHS-------IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGL  143 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~-------lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l  143 (392)
                      +...++.++..|..+++.....  +..       -..++.++.++.++++.+|..|+++++.++...+..-...+ ...+
T Consensus       141 ~~~~r~~al~~L~~i~~~~~~~--~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l  217 (852)
T 4fdd_A          141 DYNTCEGAFGALQKICEDSAEI--LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFI  217 (852)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTH--HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHH--hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHH
Confidence            4567888999999988865332  221       12366777888899999999999999998876553211111 1356


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 016280          144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD  223 (392)
Q Consensus       144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~  223 (392)
                      +.|+.++. +++..+|..|+++|..++..++...... -.+-++.+..++.+.+..++..|+.++..++... ..+..+.
T Consensus       218 ~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~  294 (852)
T 4fdd_A          218 ENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLV  294 (852)
T ss_dssp             HHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHT
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHH
Confidence            77777755 4688999999999999998765432222 2246788888899999999999999999998542 2222121


Q ss_pred             hc--CchHHHHHhh-----------cC-----------CChHHHHHHHHHHHHHHcCCChhhh--------hhhhhhHHH
Q 016280          224 KL--GFPRLMLHLA-----------SS-----------EDPDVREAALRGLLELAREKADGSA--------IKLAEDNEK  271 (392)
Q Consensus       224 ~~--G~v~~Lv~LL-----------~~-----------~d~~v~E~aL~aL~~L~~~~~~~~~--------~~~~~~~~~  271 (392)
                      ..  .+++.++..+           .+           .+..+|..+..+|..++...+..+.        ..+.++...
T Consensus       295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~  374 (852)
T 4fdd_A          295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV  374 (852)
T ss_dssp             TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHH
Confidence            11  3455555555           22           1234688888888888765442111        111112222


Q ss_pred             HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          272 LKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       272 L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      .|...-..+..|.....+.+..+.+  +++..|+..+-.....+|..++|+|.
T Consensus       375 ~R~aa~~alg~i~~~~~~~~~~~l~--~~l~~l~~~l~d~~~~Vr~~a~~~l~  425 (852)
T 4fdd_A          375 VKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSDKKALVRSITCWTLS  425 (852)
T ss_dssp             HHHHHHHHHHHTTTTTHHHHGGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            2222222233333333332222222  34666666655555667887887764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.47  E-value=3.8e-07  Score=98.97  Aligned_cols=182  Identities=12%  Similarity=0.024  Sum_probs=126.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHc---CChHHHHHhh-----------cC-----------CCHHHHHHHHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSI---GGLAPLLGYL-----------KN-----------SHANIRAKAGEVVTT  125 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l---Ggl~~Ll~lL-----------~s-----------~~~~IR~~Aa~vLg~  125 (392)
                      +++-+..+++.+..+++..... .+.+-   ..++.++..+           ..           .+-.+|..|+.+|+.
T Consensus       269 ~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~  347 (852)
T 4fdd_A          269 DENVALEACEFWLTLAEQPICK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV  347 (852)
T ss_dssp             SHHHHHHHHHHHHHHTTSTTHH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence            4566788888888888754322 22211   2245555555           22           122479999999999


Q ss_pred             HhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHH
Q 016280          126 IVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL  205 (392)
Q Consensus       126 iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~  205 (392)
                      ++...+.   .++. ..++.|..++.+ ++..+|..|++||++++.+....... .....++.|..++.+++..+|..|+
T Consensus       348 la~~~~~---~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~  421 (852)
T 4fdd_A          348 LANVYRD---ELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITC  421 (852)
T ss_dssp             HHHHHGG---GGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHhccH---HHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9976542   2332 245666666665 57899999999999999876543222 2356789999999999999999999


Q ss_pred             HHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       206 ~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      |++..++...........-.++++.|+..+.+++..+|+.|+.+|.+++.....
T Consensus       422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            999999864221111111225778888888888999999999999999876553

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.47  E-value=1.3e-08  Score=85.64  Aligned_cols=119  Identities=18%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      ..++.++.+|+++++.+|..|+++|+.+...            .++.|+.+|.+ ++..||..|+++|+.+-.       
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS-------
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC-------
Confidence            4577888999999999999999999876421            36788888774 789999999999998742       


Q ss_pred             HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280          179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE  252 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~  252 (392)
                          ...++.|..+|.+++..+|..|+++|..+..           ...++.|+.++++++..++..|+.+|.+
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                2357889999999999999999999998752           2357889999999999999999988864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.9e-06  Score=80.88  Aligned_cols=183  Identities=14%  Similarity=0.167  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHH-hhcC---CCC-hHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCC--HHHH-HHHHHc
Q 016280           70 VTPQDIEDMLDELQE-HVES---IDM-ANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNN--PRSQ-QLVMEA  140 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~-lve~---iDn-A~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNN--p~~Q-~~vl~~  140 (392)
                      ....++..+++.|.. +++.   +.. ..++.++  +..|...| +.++..+|..|+.+|+.++..-  +.++ ....  
T Consensus        28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~--~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--  103 (249)
T 2qk1_A           28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL--LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--  103 (249)
T ss_dssp             SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence            356788889999999 8853   211 2223233  66777888 7899999999999999999632  3333 3222  


Q ss_pred             CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280          141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS  220 (392)
Q Consensus       141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~  220 (392)
                      -.++.++..+.. ....|+..+..|+-+++.+..+......-..-++.|...|++++..+|..++.+|..++...+....
T Consensus       104 ~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~  182 (249)
T 2qk1_A          104 LVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS  182 (249)
T ss_dssp             HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence            258899998764 5789999999999999986533110000112566788889999999999999999999976554212


Q ss_pred             HH---HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          221 VV---DKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       221 ~l---~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .+   +.-.+++.|..++.+.+..+|+.|..+|..++..-
T Consensus       183 ~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            22   22478999999999999999999999999887544

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=98.45  E-value=2.5e-06  Score=82.17  Aligned_cols=236  Identities=16%  Similarity=0.183  Sum_probs=139.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHh--hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGY--LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPL  146 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~l--L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~L  146 (392)
                      +.+.++.+|+.|.++.++|..--.+.... +..|-.+  ..+..+.+|+.|+.+||.+-+|||.+-+.|.+.  ..+..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            34678899999999999999998888753 5555444  355788999999999999999999999988876  233333


Q ss_pred             HHhhC----C--CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhc---C
Q 016280          147 LSNFA----S--DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNE---N  215 (392)
Q Consensus       147 l~LL~----s--~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~---~  215 (392)
                      ..-|.    .  .....+++.-+++|..|+.+.    ..| ...|+..|..++...  +..+|+|++.+++.+...   .
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~~~~~  194 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKADMYE  194 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccccccc
Confidence            32222    1  134567777899999999874    234 366888888888777  899999999999998741   1


Q ss_pred             C------cchHHHHh-----cCchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhh
Q 016280          216 A------SDCSVVDK-----LGFPRLMLHLASSED--PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKG  282 (392)
Q Consensus       216 ~------~~~~~l~~-----~G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~  282 (392)
                      .      ..+.-+.+     .++...+-.++++..  ..-...--..|.+|.+.....+.-- ..-+.=|-+..+.|.+.
T Consensus       195 ~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~~~~lK~~-~~FLnWLa~E~e~Rk~~  273 (315)
T 3qml_C          195 NDDTNLILFKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIFKSDITIN-KGFLNWLAQQCKARQSN  273 (315)
T ss_dssp             -------------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHGGGSCCC-HHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHHHHhh
Confidence            1      11111111     124455666666433  2233444567778877552111000 12223333444455555


Q ss_pred             hcC----CChhhHHHHHHHHHHHHHHHHHHhCCCccccc
Q 016280          283 ISL----MSPEDLGAAREERHLVDSLWNACYNEPSSLRD  317 (392)
Q Consensus       283 i~~----~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~  317 (392)
                      ++.    .+.+|  ...++ .+++. .+..||+|-..|=
T Consensus       274 ~~~~~~~rd~eq--~~FD~-~li~s-RH~VFGNPma~R~  308 (315)
T 3qml_C          274 LDNGLQERDTEQ--DSFDK-KLIDS-RHLIFGNPMAHRI  308 (315)
T ss_dssp             HTSCCSCCCHHH--HHHHH-HHHHH-HTTTC--------
T ss_pred             hccccccCChHH--HHHHH-HHHHH-HHHHcCCchhhhh
Confidence            433    33333  12222 22333 5689999998883

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.32  E-value=1.2e-05  Score=82.04  Aligned_cols=175  Identities=18%  Similarity=0.112  Sum_probs=124.4

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +.+.+..+.+.|..+++.+....  +....++.|..++.+++..+|..|+.+|+.++...+.-+   +....++.+..+.
T Consensus        61 ~~~vr~~~~~~L~~~~~~~~~~~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~---~~~~l~~~l~~l~  135 (588)
T 1b3u_A           61 EDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD---LEAHFVPLVKRLA  135 (588)
T ss_dssp             CHHHHHHHHHHHTTCSGGGTSGG--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH---HHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccCcHH--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHh
Confidence            44556677777776665432221  112235666677788999999999999999999876421   2222344444554


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      . +.+..+|..|+..++.++.+....    ....-++.+..++.+++..+|..|+.+|..++...+..   .....+++.
T Consensus       136 ~-~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~  207 (588)
T 1b3u_A          136 G-GDWFTSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPM  207 (588)
T ss_dssp             T-CSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHH
T ss_pred             c-CCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHH
Confidence            4 457889999999999988765532    23445777888888899999999999999998653321   223467888


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          231 MLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +..++.+++..+|..|+.+|..++...+
T Consensus       208 l~~~~~d~~~~vr~~a~~~l~~l~~~~~  235 (588)
T 1b3u_A          208 FSNLASDEQDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             HHHHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHhCC
Confidence            8889999999999999999999887654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.30  E-value=1.9e-05  Score=80.51  Aligned_cols=172  Identities=10%  Similarity=-0.005  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +..-+..+.+.|..+++.... ..+ .--.++.+..+..+++..+|..|+.+++.++...+..   . ....++.|..++
T Consensus       100 ~~~vR~~a~~~L~~l~~~~~~-~~~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~-~~~l~~~l~~l~  173 (588)
T 1b3u_A          100 ETVVRDKAVESLRAISHEHSP-SDL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V-KAELRQYFRNLC  173 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCH-HHH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCCH-HHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHh
Confidence            456677888888888876542 111 1122444445666777788888888888877654321   1 122345555554


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      . ++++.||..|+.+|+.+++..+..   .....-++.|..++.+++..+|..|+.+|..++...+..   .....+++.
T Consensus       174 ~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~  246 (588)
T 1b3u_A          174 S-DDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPT  246 (588)
T ss_dssp             T-CSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHH
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHH
Confidence            3 457778888888888877654321   123445666677777777777777777777666432211   111234455


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          231 MLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      +..++.+++..+|..++.+|+.++.
T Consensus       247 l~~~~~d~~~~vR~~a~~~l~~l~~  271 (588)
T 1b3u_A          247 LRQAAEDKSWRVRYMVADKFTELQK  271 (588)
T ss_dssp             HHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHH
Confidence            5555555555566666666555554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.23  E-value=4.2e-06  Score=82.66  Aligned_cols=184  Identities=8%  Similarity=0.029  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH--------------
Q 016280           71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ--------------  135 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~--------------  135 (392)
                      +.+.+..+++.|..+++..... .....-+.++.++..+++.+..+|..|++.+++++........              
T Consensus       230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (462)
T 1ibr_B          230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  309 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence            4556667777777777643110 0111014466677888899999999999999999875311100              


Q ss_pred             ---HHHH---cCCHHHHHHhhCCC------CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHH
Q 016280          136 ---LVME---ANGLEPLLSNFASD------PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRK  203 (392)
Q Consensus       136 ---~vl~---~g~l~~Ll~LL~s~------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~k  203 (392)
                         .+++   ...+|.|+..+...      .+..+|..|..+|+.++...+.   .+ ....++.+...+.+.+.++|..
T Consensus       310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~-~~~~~~~l~~~l~~~~~~~r~a  385 (462)
T 1ibr_B          310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI-VPHVLPFIKEHIKNPDWRYRDA  385 (462)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---TH-HHHHHHHHHHHTTCSSHHHHHH
T ss_pred             hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHHHHHHHHhcCCChHHHHH
Confidence               0111   22466677666431      2347899999999999887652   22 2356788888999999999999


Q ss_pred             HHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          204 ALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       204 A~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      |+++|..++.+.... ..... ..+++.++.+|.++++.+|..|+.+|++++.....
T Consensus       386 al~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          386 AVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            999999999753311 11111 46889999999999999999999999999886643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.23  E-value=5.6e-05  Score=73.92  Aligned_cols=188  Identities=16%  Similarity=0.163  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHH-hhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 016280           47 VIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQE-HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTT  125 (392)
Q Consensus        47 ~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~-lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~  125 (392)
                      .-.+-.++++.+.       +  .+.+++.++|-.|.. +-++.+.|..|++.+|+..|+......+.+++.++..+++.
T Consensus       116 ps~ra~~iiekL~-------~--~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~  186 (339)
T 3dad_A          116 LSVRVNAILEKLY-------S--SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQ  186 (339)
T ss_dssp             HHHHHHHHHHHHH-------H--CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh-------c--CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            3345555555443       2  246788899999999 55789999999999999999999999999999999999999


Q ss_pred             HhhCCHHHHHHHHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH-------cCh---HHHHHHhhc
Q 016280          126 IVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL-------ANG---YAALRDALG  194 (392)
Q Consensus       126 iaqNNp~~Q~~vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-------~gG---l~~L~~lL~  194 (392)
                      +.-...-. +.|++ ...|..|..++.+ .+..|-+.|+.-|-++|-..+.+...+..       ..|   ++.|+.+|+
T Consensus       187 LM~~v~Gm-~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~  264 (339)
T 3dad_A          187 LMLFVDGM-LGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE  264 (339)
T ss_dssp             HTTSHHHH-HHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred             HHhccccc-cchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence            99764433 33443 3567888888875 67888888888888888766544443332       223   889999998


Q ss_pred             ---CCCHHHHHHHHHHHHHHhhcCCcch------HHHHhcCchHHHHHhhcCC--ChHHHHH
Q 016280          195 ---SESVKFQRKALNLIQYLLNENASDC------SVVDKLGFPRLMLHLASSE--DPDVREA  245 (392)
Q Consensus       195 ---s~d~kl~~kA~~lLs~L~~~~~~~~------~~l~~~G~v~~Lv~LL~~~--d~~v~E~  245 (392)
                         +.|..++..|..+|..++..-+...      ..+.+.|+-..+..+++..  +++++++
T Consensus       265 ~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          265 EKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence               6789999999999999997755422      3445567666666666643  5555443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.14  E-value=3.8e-05  Score=70.59  Aligned_cols=146  Identities=10%  Similarity=0.131  Sum_probs=111.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280          103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL  182 (392)
Q Consensus       103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~  182 (392)
                      .+...+.+.+-..|..|+..|+.++..++.....-+ ...++.|..++..+.+..|+..|+.+|+.++++..+....+ .
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-A   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-H
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-H
Confidence            477888999999999999999999987543211000 12356667776545789999999999999997654433333 3


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      ..-++.|...+.+++..+|..|+.+|..++...+  ..     .+++.+...|.+.++.+|+.++..|..+....
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            4478899999999999999999999999986432  11     35778888899999999999999999976554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.14  E-value=1.8e-05  Score=84.83  Aligned_cols=152  Identities=16%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-H-HHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-R-SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-  177 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~-~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~-  177 (392)
                      ++.+...|.+++..+|..|++++|.++.... . ... .+ ...++.|+..+.. ++..||..|+++|+.++...+... 
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~-~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LV-IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcc
Confidence            4445567788999999999999999998753 3 332 23 2468888888754 678999999999999998765421 


Q ss_pred             -HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--------------c-chHHHHhcCchHHHHHhhcCC---
Q 016280          178 -EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--------------S-DCSVVDKLGFPRLMLHLASSE---  238 (392)
Q Consensus       178 -~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~--------------~-~~~~l~~~G~v~~Lv~LL~~~---  238 (392)
                       ..+ ....++.|...|.+. .+++..|+++|.+++....              . ....+  ..+++.|+.++...   
T Consensus       445 ~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          445 NDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             STTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             cHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence             111 235677788888774 9999999999999986421              0 01111  24667777777654   


Q ss_pred             ChHHHHHHHHHHHHHHcCCCh
Q 016280          239 DPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       239 d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      +..++..++.+|..++.....
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~  541 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAK  541 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCS
T ss_pred             hhhHHHHHHHHHHHHHHHCch
Confidence            457999999999999887653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.12  E-value=2.4e-05  Score=82.46  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=87.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC--------------CCCHHHHHHHHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS--------------DPDVTVRTKALGAI  166 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s--------------~~~~~vr~kAl~AL  166 (392)
                      ++.+..+|...++.|+..|+++++.++.++|.....+.  ..++.|+.+|.+              ..++..+.+++.+|
T Consensus       181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L  258 (618)
T 1w63_A          181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL  258 (618)
T ss_dssp             GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence            44445566666677777777777777766665322222  457777776542              24788899999999


Q ss_pred             HHhhcCCcccHHH---HH----------------------------------HcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 016280          167 SSLIRHNKPGIEA---FR----------------------------------LANGYAALRDALGSESVKFQRKALNLIQ  209 (392)
Q Consensus       167 S~lvR~~~~~~~~---f~----------------------------------~~gGl~~L~~lL~s~d~kl~~kA~~lLs  209 (392)
                      +.++++.+.....   ++                                  ...++..|..++.+++..+|.-|+..|.
T Consensus       259 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~  338 (618)
T 1w63_A          259 RILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLL  338 (618)
T ss_dssp             HHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            9888765432111   00                                  0124566667777777777777777777


Q ss_pred             HHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          210 YLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       210 ~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .++..++..   +.  .....++.++.+++..+|..|+.+|..++...
T Consensus       339 ~i~~~~p~~---~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~  381 (618)
T 1w63_A          339 KTVQTDHNA---VQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN  381 (618)
T ss_dssp             HHHHHHHHH---HG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred             HHHhhCHHH---HH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence            776543221   11  12334455555555555555555555555543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.11  E-value=0.00016  Score=67.46  Aligned_cols=176  Identities=15%  Similarity=0.114  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~-lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      .+..-+.++|..|++++...|-.-.... -..++.++.++.+.+..|--.|..||+++..+.|-.-+.+.+  .+..|..
T Consensus        45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~d  122 (265)
T 3b2a_A           45 DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVS  122 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHH
Confidence            3556678999999999998765544443 357999999999999999999999999999999877676665  3566777


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      ++. ..+.-++..|+-.++.+ +--..      ...-+..|.+++.|++.++|.-+..++.+++... .+...  -.+++
T Consensus       123 lik-~~~~il~~eaae~Lgkl-kv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-~D~~i--~~~I~  191 (265)
T 3b2a_A          123 LLE-SPDDMMRIETIDVLSKL-QPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-ADSGH--LTLIL  191 (265)
T ss_dssp             HTT-SCCHHHHHHHHHHHHHC-CBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-SSCCC--GGGTT
T ss_pred             Hhc-CCCchHHHHHHHHhCcC-Ccccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-CCHHH--HHHHH
Confidence            766 46888999999999998 22111      1235678899999999999999999999998532 22211  12456


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .-+-.+|+++|+.+++.|+.+|..+.+-.-
T Consensus       192 ~eI~elL~~eD~~l~e~aLd~Le~ils~pi  221 (265)
T 3b2a_A          192 DEIPSLLQNDNEFIVELALDVLEKALSFPL  221 (265)
T ss_dssp             TTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence            667889999999999999999999987653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.10  E-value=2.7e-05  Score=83.27  Aligned_cols=178  Identities=15%  Similarity=0.080  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhC
Q 016280           73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFA  151 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~  151 (392)
                      .-+..+.+.|..++....  ..+.. ..++.+...|.+++..+|..|++++|.++... +..-...+. ..++.|+..+.
T Consensus       346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~  421 (861)
T 2bpt_A          346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN  421 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence            445566666666655332  11111 12455556778889999999999999999764 222122233 36788888765


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcccH--HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC----cch-HHHHh
Q 016280          152 SDPDVTVRTKALGAISSLIRHNKPGI--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA----SDC-SVVDK  224 (392)
Q Consensus       152 s~~~~~vr~kAl~ALS~lvR~~~~~~--~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~----~~~-~~l~~  224 (392)
                      . +++.+|..++|+|+.++.......  ..+ ...-++.|...++++ .+++..|++++..++....    ... ..+  
T Consensus       422 d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--  496 (861)
T 2bpt_A          422 D-QSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--  496 (861)
T ss_dssp             C-SCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--
T ss_pred             C-CcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--
Confidence            4 688999999999999987533210  111 234577888888776 9999999999999986422    111 111  


Q ss_pred             cCchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCCh
Q 016280          225 LGFPRLMLHLASSED--PDVREAALRGLLELAREKAD  259 (392)
Q Consensus       225 ~G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~  259 (392)
                      ..+++.|+.++.+.+  ..+|..++.+|..++...+.
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            245777888887544  78999999999999887664

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.06  E-value=2.2e-05  Score=77.47  Aligned_cols=155  Identities=12%  Similarity=0.096  Sum_probs=109.5

Q ss_pred             ChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCC-CHHHHHHHHHHHHHhhcCCcc
Q 016280          100 GLAPLLGYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus       100 gl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~-~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      .++.|+.++.++  ++.+|..|+.+++.++... +..-...+. ..++.++..+..+. +..||..|+.++++++.....
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345667788887  8999999999999999754 322111222 35677888877653 789999999999997643221


Q ss_pred             cH--HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          176 GI--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       176 ~~--~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      ..  ..+ ..--++.|..++.+.+..+|..++.+|..++...+.........++++.++..+++.+..++..++.++..+
T Consensus       208 ~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          208 NFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            11  111 111356677778888999999999999999976544322122226677788888899999999999999888


Q ss_pred             HcC
Q 016280          254 ARE  256 (392)
Q Consensus       254 ~~~  256 (392)
                      +..
T Consensus       287 ~~~  289 (462)
T 1ibr_B          287 CDE  289 (462)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.01  E-value=0.0003  Score=74.37  Aligned_cols=169  Identities=14%  Similarity=0.061  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      .+..++..++..|..+.-.-...     .-|+..+++++.+++..+|..+.-.+..++..++..--.     ++..+.+=
T Consensus        50 ~~~~~k~~~l~Kli~l~~~G~d~-----s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kD  119 (621)
T 2vgl_A           50 LDGYSKKKYVCKLLFIFLLGHDI-----DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKND  119 (621)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCC-----CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCC-----chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHh
Confidence            46677777777776654422211     247888999999999999999999999999988854322     23344444


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGF  227 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL--~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~  227 (392)
                      +.+ +++.+|.-|+.+||++..  +.    + ...-++.+.++|  .+.++.||.+|+.++..+...+++..   ...++
T Consensus       120 l~~-~n~~ir~lALr~L~~i~~--~e----~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~  188 (621)
T 2vgl_A          120 LAS-RNPTFMGLALHCIANVGS--RE----M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDW  188 (621)
T ss_dssp             HHS-CCHHHHHHHHHHHHHHCC--HH----H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSC
T ss_pred             cCC-CCHHHHHHHHHHhhccCC--HH----H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhH
Confidence            443 689999999999999842  21    2 234567788888  78899999999999999998665433   23589


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          228 PRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      ++.+..+|.+.|+.++..|+.+|..++.+++.
T Consensus       189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence            99999999999999999999999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.99  E-value=5.8e-06  Score=69.22  Aligned_cols=87  Identities=22%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ++.|+.+|+++++.+|..|+++||.+..  +         .+++.|+.+|. +++..||..|+++|+.+-          
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~----------  101 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLE-DDSGFVRSGAARSLEQIG----------  101 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHH-HCCTHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhC----------
Confidence            7889999999999999999999998863  2         24778888875 468899999999999874          


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQY  210 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~  210 (392)
                       ...+++.|..++++++..++..|+++|..
T Consensus       102 -~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          102 -GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence             12468889999999999999999988754

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.98  E-value=0.00015  Score=81.52  Aligned_cols=182  Identities=15%  Similarity=0.134  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +.+.+..|++.|...+..--.. ..-..-..++.++..|.+++..+|..|+.+|+.++...+.-   .+. ..++.|+..
T Consensus        19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~-~i~~~Ll~~   94 (1230)
T 1u6g_C           19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVE-TIVDTLCTN   94 (1230)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHH-HHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHH-HHHHHHHHH
Confidence            5567777878777766431110 00011133677889999999999999999999999865541   111 246677877


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCccc-----HHHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPG-----IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVD  223 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~-----~~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~  223 (392)
                      +.+ ++..+|..|..+|+.++....+.     ........-++.|...+. +++.+++..|+.++..++...+...... 
T Consensus        95 l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-  172 (1230)
T 1u6g_C           95 MLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-  172 (1230)
T ss_dssp             TTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-
T ss_pred             hcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-
Confidence            665 45688999999999998776543     112223457888999998 5889999999999999986433321111 


Q ss_pred             hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      -..+++.++.+|.+++..+|+.|+.+|..++....
T Consensus       173 ~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          173 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence            13467778888889999999999999999987654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.96  E-value=0.00034  Score=74.73  Aligned_cols=250  Identities=12%  Similarity=0.049  Sum_probs=146.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChH---HHHHcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHH-HHHHHHcCCHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMAN---DLHSIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLE  144 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~---d~~~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~-Q~~vl~~g~l~  144 (392)
                      ++..++.++..|..+++.++...   .-+.-..++.++..|.++  +..||..|+.+++.++.--... .........++
T Consensus       148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~  227 (861)
T 2bpt_A          148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ  227 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence            56778899999999998764220   001112356667778776  8999999999999986432111 00000011345


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-------
Q 016280          145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-------  217 (392)
Q Consensus       145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-------  217 (392)
                      .|...+. +.+..+|..|+.+|..++..++......+...-++.+...+.+.+..++..|+.++..++.....       
T Consensus       228 ~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  306 (861)
T 2bpt_A          228 VVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ  306 (861)
T ss_dssp             HHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            5555554 46889999999999999987665443333335677788888888999999999999998864210       


Q ss_pred             -------chHHHHh--cCchHHHHHhhcC-------CChHHHHHHHHHHHHHHcCCChhhh--------hhhhhhHHHHH
Q 016280          218 -------DCSVVDK--LGFPRLMLHLASS-------EDPDVREAALRGLLELAREKADGSA--------IKLAEDNEKLK  273 (392)
Q Consensus       218 -------~~~~l~~--~G~v~~Lv~LL~~-------~d~~v~E~aL~aL~~L~~~~~~~~~--------~~~~~~~~~L~  273 (392)
                             ....+..  ..+++.++..+..       ++..++..+..+|..++......+.        ..+.+.....+
T Consensus       307 ~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r  386 (861)
T 2bpt_A          307 FPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNR  386 (861)
T ss_dssp             CTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHH
Confidence                   0001111  2456777777764       2357888999999888875442111        00111111222


Q ss_pred             HHHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHHhCCCccccccceeec
Q 016280          274 QLLGERIKGISLMS-PEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVL  323 (392)
Q Consensus       274 ~~L~~~~~~i~~~~-~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~  323 (392)
                      ...-..+..|.... .+.+..+.+  +++..|++.+......+|..++|+|
T Consensus       387 ~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l  435 (861)
T 2bpt_A          387 EAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCI  435 (861)
T ss_dssp             HHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            22222233333221 233333322  3456666666555566777777754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.96  E-value=0.00025  Score=74.70  Aligned_cols=163  Identities=10%  Similarity=-0.023  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280           73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      ..+..++..|.++.-.-...     .-|+..+++++.+++-.+|..+.-.+..++..++..--.     ++..|.+-|.+
T Consensus        49 ~~k~~~l~kli~~~~~G~d~-----~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~  118 (618)
T 1w63_A           49 TYRCRNVAKLLYMHMLGYPA-----HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNH  118 (618)
T ss_dssp             TTHHHHHHHHHHHHHTTCCC-----GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHcCCCC-----cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCC
Confidence            44556666666654332211     236788889999999999999999999999888754222     34556666665


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 016280          153 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML  232 (392)
Q Consensus       153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv  232 (392)
                       +++.+|.-|+.+|+++..  +    .+ ...-++.+.++|.+.++.+|.+|+.++..+...+++..+     ++++.+.
T Consensus       119 -~n~~vr~lAL~~L~~i~~--~----~~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~  185 (618)
T 1w63_A          119 -STQFVQGLALCTLGCMGS--S----EM-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATK  185 (618)
T ss_dssp             -SSSHHHHHHHHHHHHHCC--H----HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTT
T ss_pred             -CCHhHHHHHHHHHHhcCC--H----HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHH
Confidence             678999999999999862  2    12 235678889999999999999999999999987665432     6888899


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          233 HLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       233 ~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+|.+.++.++..|+.+|..++.+++
T Consensus       186 ~lL~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          186 NLLNEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             HHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence            99999999999999999999988765

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.94  E-value=0.00047  Score=73.77  Aligned_cols=250  Identities=13%  Similarity=0.094  Sum_probs=148.4

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHH--cCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHH-HHHHHHcCCHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHS--IGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEP  145 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~--lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~-Q~~vl~~g~l~~  145 (392)
                      ++.-++.++..|..+++.++. ..|..  -..++.++.+|.++  +..+|..|+++++.++..-+.. .........++.
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~  221 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV  221 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCH-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCH-hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            456778899999988876531 11211  12356677788776  6899999999999988643311 111111124555


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--------
Q 016280          146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS--------  217 (392)
Q Consensus       146 Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~--------  217 (392)
                      +...+. +.+..+|..++.+|+.++..++.....++...-++.+...+.+.+..++..|+.++..++.....        
T Consensus       222 l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~  300 (876)
T 1qgr_A          222 VCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA  300 (876)
T ss_dssp             HHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccc
Confidence            666554 46789999999999999987776555554447788888888888999999999999988753210        


Q ss_pred             ----------chHHHH--hcCchHHHHHhhc-------CCChHHHHHHHHHHHHHHcCCChhhh--------hhhhhhHH
Q 016280          218 ----------DCSVVD--KLGFPRLMLHLAS-------SEDPDVREAALRGLLELAREKADGSA--------IKLAEDNE  270 (392)
Q Consensus       218 ----------~~~~l~--~~G~v~~Lv~LL~-------~~d~~v~E~aL~aL~~L~~~~~~~~~--------~~~~~~~~  270 (392)
                                ....+.  -..+++.++..+.       +++..+|..|+.+|..++........        ..+.++..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~  380 (876)
T 1qgr_A          301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW  380 (876)
T ss_dssp             HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred             cccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCCh
Confidence                      000100  0234566666664       23457888888888888765542111        11111222


Q ss_pred             HHHHHHHHHHhhhcCC-ChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          271 KLKQLLGERIKGISLM-SPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       271 ~L~~~L~~~~~~i~~~-~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      ..|...-..+..+... ..+.+..+..  +++..|+..+-.....+|..++|+|.
T Consensus       381 ~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~  433 (876)
T 1qgr_A          381 RYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVG  433 (876)
T ss_dssp             HHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            2222222223333322 1233332222  34555555554445567888888765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.91  E-value=0.00039  Score=66.08  Aligned_cols=194  Identities=21%  Similarity=0.193  Sum_probs=129.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCC
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYL----KNSHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANG  142 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL----~s~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~  142 (392)
                      +..++..+++.|.+.++.  +...+  ..-+..+++.+    .+++..+-..+..+|..+..    .+....+.-. .-.
T Consensus        59 d~k~~~~ale~L~~~l~~--~~~~~--~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~  133 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADT--SPRSL--LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF  133 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHH--CHHHH--HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred             CHHHHHHHHHHHHHHhhh--ChHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence            567778888888887764  22222  12233344433    36799999999998887753    2222212111 125


Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      +|.|+.-+. |+...+|.++-..+-.+..-+++.       .-++.+...+.+++.+.|..++..+.+++......    
T Consensus       134 lP~LveKlG-d~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----  201 (266)
T 2of3_A          134 VPYLLLKTG-EAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----  201 (266)
T ss_dssp             HHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred             HHHHHHHhC-CChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence            788888764 456789888877665555333321       23456778889999999999999999998654333    


Q ss_pred             HhcCch---HHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhh
Q 016280          223 DKLGFP---RLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKG  282 (392)
Q Consensus       223 ~~~G~v---~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~  282 (392)
                       ....+   +.+..++.+.|..||+.|++++..+..+....+..++++--..-++.|.+|++.
T Consensus       202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r  263 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKR  263 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhh
Confidence             23467   999999999999999999999998877665545444444444456666666653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.78  E-value=0.0046  Score=55.88  Aligned_cols=178  Identities=16%  Similarity=0.199  Sum_probs=125.6

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280           76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP  154 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~  154 (392)
                      ..|+..+..+.+...-+-.    -.+.-|+.+| +|..-.+-..-+..+|+++.-+|..-.     +.+|.|..-+.-. 
T Consensus        50 kNAl~vi~~i~~~~~el~e----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrig-  119 (253)
T 2db0_A           50 KNAISIIMVIAKTREDLYE----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIG-  119 (253)
T ss_dssp             HHHHHHHHHHHTTCGGGHH----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCC-
T ss_pred             HhHHHHHHHHHHHhHHHHH----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcC-
Confidence            4556666655554433211    0123334444 455666667778999999999996533     3577788776664 


Q ss_pred             CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280          155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL  234 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L  234 (392)
                      ++.+|.+-.|||.-+.|.+|....     +.+.-+..++.|+|..=|.-|+.+|+.+-..+.   ..  -.-++|.|..|
T Consensus       120 d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~---~y--v~PfLprL~aL  189 (253)
T 2db0_A          120 DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF---KY--VNPFLPRIINL  189 (253)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH---HH--HGGGHHHHHGG
T ss_pred             CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc---cc--cCcchHHHHHH
Confidence            899999999999999999986443     345567788899997777777777777654321   11  13578999999


Q ss_pred             hcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcC
Q 016280          235 ASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISL  285 (392)
Q Consensus       235 L~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~  285 (392)
                      |.+.|.-||-.|..+|.++++-++            +|+..+...++....
T Consensus       190 L~D~deiVRaSaVEtL~~lA~~np------------klRkii~~kl~e~~D  228 (253)
T 2db0_A          190 LHDGDEIVRASAVEALVHLATLND------------KLRKVVIKRLEELND  228 (253)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTSCH------------HHHHHHHHHHHHCCC
T ss_pred             HcCcchhhhHHHHHHHHHHHHcCH------------HHHHHHHHHHHHhcC
Confidence            999999999999999999999884            346666666666654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.78  E-value=0.0013  Score=61.47  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=119.8

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      .+..|+.+|...++.++.+|..+|+.+-..-|..-....=...++.++.++.+ .+..+..+|+-+|..++.+.|.....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            36778899999999999999999999988644333323333589999999765 68999999999999999999988888


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      |..  -...|..++.+++.-++..|+-.+..|- - ....     -+++..+..|+.+.+..++..++++|.+++.-+.
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklk-v-~~~~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ-P-LEDS-----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCC-B-SCCC-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCC-c-ccch-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            854  4567788888999999999999998881 1 1111     2456778889999999999999999999988553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.00014  Score=68.17  Aligned_cols=154  Identities=12%  Similarity=0.080  Sum_probs=111.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHH-HhhCCHHHHHHHHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc-ccHH-H
Q 016280          104 LLGYLKNSHANIRAKAGEVVTT-IVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK-PGIE-A  179 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~-iaqNNp~~Q~~vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~-~~~~-~  179 (392)
                      +...+.+++-.-|..|...|+. ++.++|+....-.+ ...+..|...+..+.+..++..|+.||+.++++.. +... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3456789999999999999999 88666644210001 12355666777567889999999999999997665 4443 3


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +. .--++.|+..+.+....++..+..++..++..-+.....-.=..+++.|...|.+.++.+|+.++.+|..++....
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            32 2368888999998889999999999999986432110000001256788888999999999999999999987664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.0013  Score=61.71  Aligned_cols=180  Identities=12%  Similarity=0.111  Sum_probs=120.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC--h--HHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHH-----HHHHHHHc
Q 016280           71 TPQDIEDMLDELQEHVESIDM--A--NDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPR-----SQQLVMEA  140 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn--A--~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~-----~Q~~vl~~  140 (392)
                      .-.++..+++.|..++.....  .  ..+...+.+..++ ..+..++..+...|+.+|..++.....     ......-.
T Consensus        22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~  101 (278)
T 4ffb_C           22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS  101 (278)
T ss_dssp             SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence            346788899999888875422  1  1222345555544 688899999999999999998864211     11111122


Q ss_pred             CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc--
Q 016280          141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD--  218 (392)
Q Consensus       141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~--  218 (392)
                      ..++.|+.-.-.+....++.+|+.++..++....+...      .++.+...+.+++++++..++..|..++......  
T Consensus       102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~  175 (278)
T 4ffb_C          102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV  175 (278)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence            45777876423345788999999999888755433222      2466778889999999999999999988642111  


Q ss_pred             -hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          219 -CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       219 -~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                       ....+ ..+++.+..+|.+.+..||+.|..++..+...-
T Consensus       176 ~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          176 NVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             CHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             CchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence             11111 134566778889999999999999999987654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.48  E-value=0.00037  Score=78.41  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=109.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      +..++.-+.++++++|..|..-|.+..+.+......-.....++.|+..|. +++..+|..|+.+|+.++.+.+..  . 
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~--~-   83 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEY--Q-   83 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHH--H-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHH--H-
Confidence            556777788999999999999888877654210000001134667888876 478999999999999999876541  1 


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-----HHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-----SVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELA  254 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-----~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~  254 (392)
                       ...-++.|...+.+++..+|..|+.+|..++..-....     ..-.-..+++.|...+. +++..+++.|+.+|..++
T Consensus        84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence             23457778888888888999999999999986543320     11122357888888888 588999999999999998


Q ss_pred             cCC
Q 016280          255 REK  257 (392)
Q Consensus       255 ~~~  257 (392)
                      ...
T Consensus       163 ~~~  165 (1230)
T 1u6g_C          163 SRQ  165 (1230)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.45  E-value=0.0027  Score=66.97  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYL--KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL--~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +-.+--||..|..+.. .+.+.++     ++.+..+|  .+.++-||..|+.++..+.+.+|..-   -..+.++.|..+
T Consensus       125 ~~ir~lALr~L~~i~~-~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~l  195 (621)
T 2vgl_A          125 PTFMGLALHCIANVGS-REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHL  195 (621)
T ss_dssp             HHHHHHHHHHHHHHCC-HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHH
T ss_pred             HHHHHHHHHHhhccCC-HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHH
Confidence            3445567777776543 2333333     67788899  88999999999999999999888442   224788889888


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      |. |.++.|+..|+.+|..++.+++.
T Consensus       196 L~-d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          196 LN-DQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             TT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             hC-CCCccHHHHHHHHHHHHHHhChH
Confidence            74 67899999999999999987654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.43  E-value=0.013  Score=57.29  Aligned_cols=155  Identities=15%  Similarity=0.109  Sum_probs=119.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  181 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~  181 (392)
                      ..++.-|.+++...+..|..-|..+.|..+..-..|++.+|+..|+..... .+-..+..++.|+.++.- +..+...++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchh
Confidence            345566667778888899999999776545454558999999999999866 478899999999999874 556676666


Q ss_pred             H-cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--------C--chHHHHHhhc---CCChHHHHHHH
Q 016280          182 L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--------G--FPRLMLHLAS---SEDPDVREAAL  247 (392)
Q Consensus       182 ~-~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--------G--~v~~Lv~LL~---~~d~~v~E~aL  247 (392)
                      . ...+..|..++.+.+..+.+.|+.+|-.++...+.....+.+.        |  ....|+.+|.   +.|..++.+|+
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            4 4578889999999899999999999999997766555443322        2  4778999997   78999999998


Q ss_pred             HHHHHHHcCCC
Q 016280          248 RGLLELAREKA  258 (392)
Q Consensus       248 ~aL~~L~~~~~  258 (392)
                      ..|-.+..+.+
T Consensus       279 tLIN~lL~~ap  289 (339)
T 3dad_A          279 TLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHhcCC
Confidence            77766655544

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.30  E-value=0.0097  Score=58.73  Aligned_cols=140  Identities=13%  Similarity=0.097  Sum_probs=110.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      .+..+++++.+++..+|....-.+-.++...+   +.++   ++..|.+=+.+ +++-+|..|+.+++++.-. . -.+ 
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~-~-m~~-  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---DVII---VTSSLTKDMTG-KEDSYRGPAVRALCQITDS-T-MLQ-  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---CGGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCT-T-THH-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---HHHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCH-H-HHH-
Confidence            36667899999999999999999988887632   3232   34555555454 6889999999999998632 2 222 


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                          .-.+.+.++|.+.++-||.+|+....+|+...++.    ++ +++..+-.++.+.++-++-+|+.+|..+..++.
T Consensus       139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~  208 (355)
T 3tjz_B          139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR  208 (355)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence                24566899999999999999999999999765552    22 799999999999999999999999999987653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.12  E-value=0.0072  Score=66.58  Aligned_cols=100  Identities=15%  Similarity=0.074  Sum_probs=75.4

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSV  221 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~-lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~  221 (392)
                      +..|+..+.++.+..||+.|+.+|+-+.-+.+..         ++-++. ++++.++.+|..|+++|.-++.+++. .  
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~--  646 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q--  646 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H--
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H--
Confidence            5567777666777889999999999876665422         233343 55678899999999999988866543 1  


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                          .++..|..++++.+..|+..|+.+|+.+..++.
T Consensus       647 ----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          647 ----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             ----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence                235677788889999999999999999877655

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.65  E-value=0.13  Score=52.60  Aligned_cols=135  Identities=13%  Similarity=0.125  Sum_probs=99.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR  181 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~  181 (392)
                      ..++..- ..+...+..|+..|.....+-|..|+..     +..++.|... .|..||+.|+-.|..+|++  ...    
T Consensus        32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcED-ed~~IR~qaik~Lp~~ck~--~~i----   98 (507)
T 3u0r_A           32 QVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCED-EDVSIRRQAIKELPQFATG--ENL----   98 (507)
T ss_dssp             HHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTC-SSHHHHHHHHHHGGGGCCT--TCH----
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhhHHHhhh--hhh----
Confidence            3344433 3468999999999999999999999864     5578888654 6899999999999999998  233    


Q ss_pred             HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                       ..-..+|+++|++++..-..-+-..|..|+..++..        .+..+...+..++..+||+++..|..-+..-+
T Consensus        99 -~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~  166 (507)
T 3u0r_A           99 -PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLP  166 (507)
T ss_dssp             -HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred             -hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcc
Confidence             335678999999988777777777777777654332        22233333333578999999999987665544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.54  E-value=0.07  Score=48.23  Aligned_cols=200  Identities=14%  Similarity=0.116  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHh---hcCCCChHHHHH-----------
Q 016280           32 DRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEH---VESIDMANDLHS-----------   97 (392)
Q Consensus        32 ~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~l---ve~iDnA~d~~~-----------   97 (392)
                      |++||.+.+...--|--..-|.++.++.+...      .-++-.+-++..|--+   .|.|+....+.+           
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~------~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAK------TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT------TCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHH------HhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            45677766666544444555666655433221      1223334444444433   233333222222           


Q ss_pred             --cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280           98 --IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus        98 --lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                        -+.+|.+..-+.-.++.+|..-..+|+.++.+||..-..|     +.-+..++.+ ++..=|..|+.-|+.+--++..
T Consensus       104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~  177 (253)
T 2db0_A          104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSS-KNREDKLTALNFIEAMGENSFK  177 (253)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHH
T ss_pred             HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcC-CChHHHHHHHHHHHHHhccCcc
Confidence              1223444455566799999999999999999999775544     4567888774 6888888999999988765542


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      -     ...-++-|..+|+..|.-+|..|+-.|.+|+.-++..+..      |..-++-+.+.+..++..+-.+|+.|+
T Consensus       178 y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          178 Y-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             H-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             c-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            2     3456888999999999999999999999999877665443      333455567777888888888887764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.47  E-value=0.02  Score=56.48  Aligned_cols=153  Identities=13%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      .+++..+|.+.++-||..|+.++..+...+|+.-+     +.+..+-+++.+ .++.|...|+.++..+.++...+...+
T Consensus       141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kL  214 (355)
T 3tjz_B          141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKM  214 (355)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHH
Confidence            34556788899999999999999999999986533     577778777654 688899999999988887654332222


Q ss_pred             HH---cCh-----------------------------HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          181 RL---ANG-----------------------------YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       181 ~~---~gG-----------------------------l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      +.   .+|                             ++.|..+|++.+.-|.-.|+.+|.+|......    + -..++
T Consensus       215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~-~~~a~  289 (355)
T 3tjz_B          215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----E-LAPAV  289 (355)
T ss_dssp             HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CC
T ss_pred             HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----H-HHHHH
Confidence            11   111                             12233333333444455555555444321100    1 11234


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIK  264 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~  264 (392)
                      ..|..+|.++++.+|-.|++.|..++...|..+..|
T Consensus       290 ~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~  325 (355)
T 3tjz_B          290 SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC  325 (355)
T ss_dssp             CTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH
Confidence            445556667777777777777777777777655544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.07  E-value=0.051  Score=59.92  Aligned_cols=104  Identities=9%  Similarity=0.031  Sum_probs=73.0

Q ss_pred             CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-H
Q 016280          142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-S  220 (392)
Q Consensus       142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-~  220 (392)
                      .++.++.+|....++.+|..|.+|++-++-+++.       ...+..|..++++.+..|+..|+.+|..+..+.++.. .
T Consensus       612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~  684 (963)
T 4ady_A          612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNP  684 (963)
T ss_dssp             SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccch
Confidence            4678888777777899999999999999877652       2356688899999999999999999999986654431 1


Q ss_pred             HHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHHH
Q 016280          221 VVDKLGFPRLMLHLAS--SEDPDVREAALRGLLELA  254 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~--~~d~~v~E~aL~aL~~L~  254 (392)
                      .+  .++.++|.....  +.|...+=-+.-|.+-+.
T Consensus       685 rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          685 QV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             TH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            11  133455555554  345555555555555443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.97  E-value=0.23  Score=49.33  Aligned_cols=163  Identities=21%  Similarity=0.272  Sum_probs=114.1

Q ss_pred             HHHHHHHhhc--CCCChHHHHHcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCH
Q 016280           78 MLDELQEHVE--SIDMANDLHSIGGLAPLLGYLK-----------NSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGL  143 (392)
Q Consensus        78 aL~~L~~lve--~iDnA~d~~~lGgl~~Ll~lL~-----------s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l  143 (392)
                      .|+.|.-.+.  .+++-..|+ .+|+..|+..|.           ..+..++.....||..+. |+..--+.|+.. .++
T Consensus        87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHH
Confidence            4555554443  467789998 889999998874           124578888999999887 556555667765 677


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc-cc-HHHHH----------HcChHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 016280          144 EPLLSNFASDPDVTVRTKALGAISSLIRHNK-PG-IEAFR----------LANGYAALRDALGS-ESVKFQRKALNLIQY  210 (392)
Q Consensus       144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~-~~-~~~f~----------~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~  210 (392)
                      ..|...+.+ ..+.++.-|+--|+.+|.-.. .+ ...++          ...-+..++..|.+ .+..++..+..+|..
T Consensus       165 ~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~  243 (383)
T 3eg5_B          165 LLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  243 (383)
T ss_dssp             HHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            888888766 578899999999988876443 22 22222          23447888888887 578999999999999


Q ss_pred             HhhcCCcc------hHHHHhcCchHHHHHhhcCCChHHH
Q 016280          211 LLNENASD------CSVVDKLGFPRLMLHLASSEDPDVR  243 (392)
Q Consensus       211 L~~~~~~~------~~~l~~~G~v~~Lv~LL~~~d~~v~  243 (392)
                      |+...++.      +..+...|+.+.+-.+=..++.++.
T Consensus       244 li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          244 LITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  282 (383)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence            99765432      3466778988877765444454444

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.91  E-value=0.15  Score=46.96  Aligned_cols=145  Identities=20%  Similarity=0.252  Sum_probs=97.3

Q ss_pred             CCCChHHHHHcCChHHHHHhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCCC
Q 016280           88 SIDMANDLHSIGGLAPLLGYLKN----S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPD  155 (392)
Q Consensus        88 ~iDnA~d~~~lGgl~~Ll~lL~s----~-------~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~~  155 (392)
                      .+++-..| ..||+..|+.+|..    .       +..+...+..||..+. |+..--+.++.. +++..|...|.+ +.
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s-~~  109 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AV  109 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCT-TS
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCC-CC
Confidence            45667777 46888888887752    1       4567888999998887 555555557765 577777777765 67


Q ss_pred             HHHHHHHHHHHHHhhcCCc-cc-HHHHH----------HcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcc----
Q 016280          156 VTVRTKALGAISSLIRHNK-PG-IEAFR----------LANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASD----  218 (392)
Q Consensus       156 ~~vr~kAl~ALS~lvR~~~-~~-~~~f~----------~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~----  218 (392)
                      +.+|..++--|+.+|.-.. .+ ...++          ...-+..++..+.+ .+..++..+..+|..|+...++.    
T Consensus       110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~  189 (233)
T 2f31_A          110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  189 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            8899988887877765433 13 22221          22356667777774 56889998999999888764332    


Q ss_pred             --hHHHHhcCchHHHHHhh
Q 016280          219 --CSVVDKLGFPRLMLHLA  235 (392)
Q Consensus       219 --~~~l~~~G~v~~Lv~LL  235 (392)
                        +..+...|+.+.+-.+-
T Consensus       190 ~lR~ef~~~Gl~~il~~l~  208 (233)
T 2f31_A          190 HIRSELMRLGLHQVLQELR  208 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHCChHHHHHHHh
Confidence              34566777776665543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.90  E-value=0.17  Score=55.08  Aligned_cols=137  Identities=9%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh---CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280          109 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF---ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG  185 (392)
Q Consensus       109 ~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL---~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG  185 (392)
                      .+.+-..+..|++++|.++..-....     ...++.++..+   .. +++.+|..++|+|+..++...... .+ -..-
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~v  530 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHP-VM-INSV  530 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHH
Confidence            45677899999999999997633211     11233333322   32 467899999999999876432222 23 3467


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCC
Q 016280          186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASSE--DPDVREAALRGLLELAREKA  258 (392)
Q Consensus       186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ++.|...|++  ++++..|++++..|+...+..   +..  ..++..+..++...  +...++.++.+++.++...+
T Consensus       531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~---l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          531 LPLVLHALGN--PELSVSSVSTLKKICRECKYD---LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG---CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence            8888888865  889999999999999653321   211  13344455556542  56789999999999987554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.86  E-value=0.042  Score=61.30  Aligned_cols=142  Identities=11%  Similarity=0.022  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHH-HHHHcCCHHHHHHhhCC--CCCH--HHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280          111 SHANIRAKAGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFAS--DPDV--TVRTKALGAISSLIRHNKPGIEAFRLANG  185 (392)
Q Consensus       111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~-~vl~~g~l~~Ll~LL~s--~~~~--~vr~kAl~ALS~lvR~~~~~~~~f~~~gG  185 (392)
                      .+=..++.|+|++|.++..-..-++ .++. .+++.|+.++..  ..++  -++..++|.||..++-..... .| -..-
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~-L~~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NF-LRTV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HH-HHHH
Confidence            4678999999999999986433222 2222 367888887653  1123  345567799997665221111 22 3445


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHHH----HhhcCCChHHHHHHHHHHHHHHc
Q 016280          186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLML----HLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~------~G~v~~Lv----~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      +..|...|..++++++..||+++.+|+...   +..+..      ..+++.++    ..+..-+..-+..+..+++.+++
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c---~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHH---HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            666778887788999999999999999742   223332      12344443    33334566777888899999988


Q ss_pred             CCC
Q 016280          256 EKA  258 (392)
Q Consensus       256 ~~~  258 (392)
                      .-+
T Consensus       619 ~~~  621 (1023)
T 4hat_C          619 EER  621 (1023)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            876

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=95.85  E-value=0.1  Score=53.27  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=111.4

Q ss_pred             CChHHHHHcCCh--HHHHHhhc-CCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHHcCCHHHHHHhhCCC--CCHHHH
Q 016280           90 DMANDLHSIGGL--APLLGYLK-NSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEANGLEPLLSNFASD--PDVTVR  159 (392)
Q Consensus        90 DnA~d~~~lGgl--~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp-----~~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr  159 (392)
                      +-+..|...+..  +.|+..++ +....|-+-+..++-|+...++     ...+.++..++ +++++.|...  .|+++.
T Consensus       260 ~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~  338 (480)
T 1ho8_A          260 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR  338 (480)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH
Confidence            345556555422  44555565 4667788888889999998763     22333444455 4577666643  344433


Q ss_pred             HHHHHH---------------------HHHhhcCCcccHH-HHH--------H--cChHHHHHHhhcC----------CC
Q 016280          160 TKALGA---------------------ISSLIRHNKPGIE-AFR--------L--ANGYAALRDALGS----------ES  197 (392)
Q Consensus       160 ~kAl~A---------------------LS~lvR~~~~~~~-~f~--------~--~gGl~~L~~lL~s----------~d  197 (392)
                      .-.-+-                     -|...+-.|.... .|=        +  ..-+..|+.+|.+          .|
T Consensus       339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d  418 (480)
T 1ho8_A          339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  418 (480)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence            322111                     1122222333332 332        2  1235667888873          46


Q ss_pred             HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          198 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       198 ~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +.+..-||+=|..++...|..+..+.+.|+=..+++|+.++|++|+..||.++..+..++
T Consensus       419 ~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          419 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             cceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            889999999999999999999999999999999999999999999999999999887655

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.63  E-value=1.8  Score=42.15  Aligned_cols=174  Identities=13%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC---hHHHHHHhhcCCC
Q 016280          121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN---GYAALRDALGSES  197 (392)
Q Consensus       121 ~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g---Gl~~L~~lL~s~d  197 (392)
                      .+|..|+.+ +.+...++..+.+-.+.+.+.. ++-++..-|...+-.+...|+.....|+..+   -+...-.+|.|++
T Consensus       145 ~mLRecir~-e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N  222 (341)
T 1upk_A          145 IMLRECIRH-EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN  222 (341)
T ss_dssp             HHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHh-HHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence            334444443 3344445555555566665444 5678888888888888777776666776544   2455678899999


Q ss_pred             HHHHHHHHHHHHHHhhcCCcchHHHH----hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhhhhhhhhHHH
Q 016280          198 VKFQRKALNLIQYLLNENASDCSVVD----KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEK  271 (392)
Q Consensus       198 ~kl~~kA~~lLs~L~~~~~~~~~~l~----~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~~~~~~~~~~  271 (392)
                      --.|+.++-+|+.|+.+ +.+...+.    +..-+..++.||++....+|-.|..+.--.+.+..  +.+...+..--.+
T Consensus       223 YVTkRQSlKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~k  301 (341)
T 1upk_A          223 YVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK  301 (341)
T ss_dssp             HHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH
T ss_pred             chhHHHHHHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHH
Confidence            99999999999999964 45544333    33568899999999999999999988877665432  2233222222222


Q ss_pred             HHHHHHHHHhhhcCCCh-hhHHHHHHHHHHHHH
Q 016280          272 LKQLLGERIKGISLMSP-EDLGAAREERHLVDS  303 (392)
Q Consensus       272 L~~~L~~~~~~i~~~~~-ed~~~~~ee~~~~~~  303 (392)
                      |..    -+..... +. || +.+.+|++++-.
T Consensus       302 Ll~----fl~~f~~-d~~eD-eqF~dEK~~lI~  328 (341)
T 1upk_A          302 LIE----FLSKFQN-DRTED-EQFNDEKTYLVK  328 (341)
T ss_dssp             HHH----HHHHTTT-TC-CC-SHHHHHHHHHHH
T ss_pred             HHH----HHHhCCC-CCcch-hhHHHHHHHHHH
Confidence            222    2333221 22 33 568888877533

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.56  E-value=0.12  Score=56.43  Aligned_cols=135  Identities=9%  Similarity=0.011  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh---hC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChH
Q 016280          111 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN---FA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY  186 (392)
Q Consensus       111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L---L~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl  186 (392)
                      .+-..|+.|..++|.++........     ..++.++.+   +. .+.++.||..++|+|+.++....... .+ -...+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~-l~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AY-IPPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----C-HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HH-HHHHH
Confidence            4556899999999999876443221     223333332   23 24578999999999999875322211 11 22356


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcC--CChHHHHHHHHHHHHHHcCCC
Q 016280          187 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASS--EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       187 ~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~--~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.|...|.   ++++..|++++.+|+....   ..+...  .++..+..++..  -+.+.++.++.+++.++..-+
T Consensus       549 ~~l~~~l~---~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          549 NLLVRGLN---SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHHHHHHH---SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhC---hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            66777773   7899999999999996533   222211  455566667776  357899999999999987543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.75  Score=42.59  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=100.4

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HHHH-HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc---H
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ--QLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG---I  177 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q--~~vl-~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~---~  177 (392)
                      |-.-|.|.+=..|..|..-|..+.++++...  +.++ ..+.+..++.-...|.+..+..+++.+|..++......   .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4567889999999999999999888766432  1111 23444445544446789999999999999998764322   1


Q ss_pred             HHH--HHcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          178 EAF--RLANGYAALR-DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       178 ~~f--~~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      ..+  .....++.|+ ++|.+...+++..|..++..++...... ..     +++.++..+.+.++.++..++..|..+.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            222  2234456555 4678888999999998888877532221 11     2456777888999999999999999887


Q ss_pred             cCC
Q 016280          255 REK  257 (392)
Q Consensus       255 ~~~  257 (392)
                      ...
T Consensus       168 ~~f  170 (278)
T 4ffb_C          168 AAF  170 (278)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.18  E-value=0.43  Score=47.34  Aligned_cols=155  Identities=19%  Similarity=0.250  Sum_probs=105.2

Q ss_pred             CCCChHHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCCC
Q 016280           88 SIDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPD  155 (392)
Q Consensus        88 ~iDnA~d~~~lGgl~~Ll~lL~s-----------~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~~  155 (392)
                      .+++-..|. .+|+..|+.+|..           .+..+...+..||..+. ||..--+.|+.. +++..|...|.+ +.
T Consensus        37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s-~~  113 (386)
T 2bnx_A           37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AV  113 (386)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCT-TS
T ss_pred             CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCC-CC
Confidence            456677775 6888888877641           14577888999998887 555455556666 677777777765 57


Q ss_pred             HHHHHHHHHHHHHhhcCCc-cc-HHHH----------HHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcc----
Q 016280          156 VTVRTKALGAISSLIRHNK-PG-IEAF----------RLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASD----  218 (392)
Q Consensus       156 ~~vr~kAl~ALS~lvR~~~-~~-~~~f----------~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~----  218 (392)
                      +.++..++--|+.+|--.. .+ ...+          ....-+..|+..+. +.+..++..+..+|..|+...++.    
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~  193 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  193 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            8888888877777765432 13 2222          12335667888887 467899999999999999765432    


Q ss_pred             --hHHHHhcCchHHHHHhhcCCChHHHHH
Q 016280          219 --CSVVDKLGFPRLMLHLASSEDPDVREA  245 (392)
Q Consensus       219 --~~~l~~~G~v~~Lv~LL~~~d~~v~E~  245 (392)
                        +..+...|+.+.+-.+-...+.++..+
T Consensus       194 ~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          194 HIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence              356778898887776655555554433

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.99  E-value=0.41  Score=53.02  Aligned_cols=142  Identities=11%  Similarity=0.020  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHH-HHHHcCCHHHHHHhhCC----CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280          111 SHANIRAKAGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFAS----DPDVTVRTKALGAISSLIRHNKPGIEAFRLANG  185 (392)
Q Consensus       111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~-~vl~~g~l~~Ll~LL~s----~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG  185 (392)
                      .+-..+..|++++|.++.......+ .++. ..++.|+.+...    ++.+-++..++|+++..++-..... .+ -...
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~-l~~v  541 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NF-LRTV  541 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HH-HHHH
Confidence            5677899999999999875432211 1111 234445553221    1233455568899987664322222 22 2346


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHH----HHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRL----MLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~------~G~v~~----Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ++.|...|.+++.+++..||+++..|+...+   ..+..      ..+++.    +..++..-+.+-......+++.++.
T Consensus       542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7778888888899999999999999997532   22320      122333    3444555555556677788888766


Q ss_pred             CCC
Q 016280          256 EKA  258 (392)
Q Consensus       256 ~~~  258 (392)
                      ..+
T Consensus       619 ~~~  621 (1049)
T 3m1i_C          619 EER  621 (1049)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.89  E-value=0.35  Score=53.00  Aligned_cols=131  Identities=11%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---C--CCCHHHHHHHHHHHHHhhcCCc----c--------c
Q 016280          114 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---S--DPDVTVRTKALGAISSLIRHNK----P--------G  176 (392)
Q Consensus       114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s--~~~~~vr~kAl~ALS~lvR~~~----~--------~  176 (392)
                      .+|..|..+|..++...+   +.++.. .++.+-+.+.   .  ..+-..|..|++|+++++.+..    .        .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            589999999999998866   222221 2222223333   1  2355688899999999975421    0        2


Q ss_pred             HHHHHHcChHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          177 IEAFRLANGYAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       177 ~~~f~~~gGl~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      ...|+..-    +...|.++   .+.+|.+|+|+++.++..-  ..+.  -..+++.++..|.+++..|+.+|+.||.++
T Consensus       452 l~~~l~~~----v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~  523 (960)
T 1wa5_C          452 VVDFFTKE----IAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKI  523 (960)
T ss_dssp             HHHHHHHH----THHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----hHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            22332222    23334555   8999999999999998652  1221  224577788888888899999999999999


Q ss_pred             HcC
Q 016280          254 ARE  256 (392)
Q Consensus       254 ~~~  256 (392)
                      +..
T Consensus       524 ~~~  526 (960)
T 1wa5_C          524 LTI  526 (960)
T ss_dssp             TTC
T ss_pred             Hhc
Confidence            874

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.30  E-value=0.29  Score=53.24  Aligned_cols=137  Identities=12%  Similarity=0.054  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh
Q 016280          115 IRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL  193 (392)
Q Consensus       115 IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL  193 (392)
                      .|..+..+|..++...+ .+-..+++  .+...+.......+-..+..++|||++++.+.......++. ..++.|..+ 
T Consensus       423 ~r~~~~~~L~~~~~~~~~~~l~~~~~--~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~l-  498 (963)
T 2x19_B          423 YRVDISDTLMYVYEMLGAELLSNLYD--KLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPRI-  498 (963)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHH--HHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGGS-
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhC-
Confidence            36667777777664322 11111111  12222221123356778899999999999886543222221 123333222 


Q ss_pred             cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          194 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       194 ~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      .++++.++..++|+++.++..-....+ +. ..+++.++..|.+  +.++.+|+.+|..++.++..
T Consensus       499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~  560 (963)
T 2x19_B          499 SISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKY  560 (963)
T ss_dssp             CCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence            335789999999999988753111121 11 2677888887754  88999999999999987653

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.26  E-value=1.4  Score=40.98  Aligned_cols=140  Identities=13%  Similarity=0.068  Sum_probs=97.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc-CCcccHHHHHH
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-HNKPGIEAFRL  182 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR-~~~~~~~~f~~  182 (392)
                      ...|.+++..++|..|+.+||.+ ..   ..+      .++.+...+..+.+=.||.-+..+++.++. -++..      
T Consensus        76 a~~L~~~~~deVR~~Av~lLg~~-~~---~~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------  139 (240)
T 3l9t_A           76 AFLAYQSDVYQVRMYAVFLFGYL-SK---DKE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------  139 (240)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHT-TT---SHH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT------
T ss_pred             HHHHHhCcchHHHHHHHHHHHhc-cC---cHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH------
Confidence            34566888899999999999988 21   111      344444546667777899999999998885 22321      


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhh
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSA  262 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~  262 (392)
                        -++.+...+.+++..+|+-|.-.+.--+.. +..+.  .-.-+++.|..+..+++.-||..+..+|-.+++++|+.+.
T Consensus       140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~  214 (240)
T 3l9t_A          140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK  214 (240)
T ss_dssp             --THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence              456778889999999999887766433321 11100  0012456666677788899999999999999999997665


Q ss_pred             hh
Q 016280          263 IK  264 (392)
Q Consensus       263 ~~  264 (392)
                      ..
T Consensus       215 ~~  216 (240)
T 3l9t_A          215 IE  216 (240)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.14  E-value=1.4  Score=49.28  Aligned_cols=220  Identities=15%  Similarity=0.201  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHhhC-CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc
Q 016280           31 EDRRWFMEAMQSQ-TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLK  109 (392)
Q Consensus        31 E~~~~L~~Al~~~-~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~  109 (392)
                      .-|.||.+|+... +...++.|++.+          .++.++..+...+|-.+...+   -.-...     +..+..++.
T Consensus       340 ~~r~~~lDal~~aGT~~a~~~i~~~i----------~~~~l~~~ea~~~l~~~~~~~---~Pt~e~-----l~~~~~l~~  401 (1056)
T 1lsh_A          340 DYRRWILDAVPAMATSEALLFLKRTL----------ASEQLTSAEATQIVASTLSNQ---QATRES-----LSYARELLN  401 (1056)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHH----------HTTCSCHHHHHHHHHHHHHTC---CCCHHH-----HHHHHHHHT
T ss_pred             HHHHHHHHHhHhcCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHhhccC---CCCHHH-----HHHHHHHHh
Confidence            3456777777664 444455555532          223345544333433333222   121222     344555665


Q ss_pred             C----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCCHHHHH----HhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280          110 N----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLL----SNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       110 s----~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~l~~Ll----~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      +    .++.+|..|.-.+|+++.    +++.|..     ..++++.    ..+.+ .+...+..++-||+|+-  ++   
T Consensus       402 ~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g--~p---  470 (1056)
T 1lsh_A          402 TSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAG--QP---  470 (1056)
T ss_dssp             CHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHT--CG---
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccC--Ch---
Confidence            5    467888888888888764    3322221     1233343    33344 46778899999999984  34   


Q ss_pred             HHHHHcChHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh--cCCChHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALGS-------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA--SSEDPDVREAALR  248 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s-------~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL--~~~d~~v~E~aL~  248 (392)
                            ..++.|..++..       ...+++..|+++|+.+....+..        +-+.+..+.  ...+.++|-.|+.
T Consensus       471 ------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~  536 (1056)
T 1lsh_A          471 ------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCI  536 (1056)
T ss_dssp             ------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             ------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHH
Confidence                  245666777642       24689999999999987543221        223456666  4667888888877


Q ss_pred             HHHHHHcCCCh----hhhhhh-hhhHHHHHHHHHHHHhhhcCCChhhHHHHH
Q 016280          249 GLLELAREKAD----GSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAR  295 (392)
Q Consensus       249 aL~~L~~~~~~----~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~  295 (392)
                      +|..  ++-+.    .+...+ .++..++...+...++++...+..+...+.
T Consensus       537 ~Lm~--t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la  586 (1056)
T 1lsh_A          537 VFFE--SKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVA  586 (1056)
T ss_dssp             HHHH--TCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred             HHHH--HCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            6642  22221    111111 446677888888889888876544444433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.04  E-value=0.28  Score=53.76  Aligned_cols=137  Identities=12%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCH-------------HHHHHHHHcCCHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCc
Q 016280          110 NSHANIRAKAGEVVTTIVQNNP-------------RSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       110 s~~~~IR~~Aa~vLg~iaqNNp-------------~~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +++-..|..|..++|.++.+..             .... ++..-++|    .|.+.  .++-+|..|+|+|+.++...+
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~-~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD-FFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH-HHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH-HHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence            4566789999999999985421             1111 11111222    22322  278999999999999887642


Q ss_pred             ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-------c-chHHHHhc--CchHHHHHhhcCCC---h-
Q 016280          175 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-------S-DCSVVDKL--GFPRLMLHLASSED---P-  240 (392)
Q Consensus       175 ~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-------~-~~~~l~~~--G~v~~Lv~LL~~~d---~-  240 (392)
                      +   .+ -...++.++..|.+++.+|+..|+++|..|+....       . .+..+...  .+++.|+.++....   . 
T Consensus       491 ~---~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~  566 (960)
T 1wa5_C          491 K---AQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK  566 (960)
T ss_dssp             H---HH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred             H---HH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence            1   22 34568888889988889999999999999986311       1 12222211  34555666666531   1 


Q ss_pred             -HHHHHHHHHHHHHHc
Q 016280          241 -DVREAALRGLLELAR  255 (392)
Q Consensus       241 -~v~E~aL~aL~~L~~  255 (392)
                       ...+.++.+|..++.
T Consensus       567 ~~~~e~l~~al~~vv~  582 (960)
T 1wa5_C          567 LAENEFLMRSIFRVLQ  582 (960)
T ss_dssp             HTSCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH
Confidence             133566666666554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.02  E-value=3.5  Score=37.57  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=84.7

Q ss_pred             HcCCHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHH
Q 016280          139 EANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNL  207 (392)
Q Consensus       139 ~~g~l~~Ll~LL~s----------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~l  207 (392)
                      ..+|+..|+..|..          ..+......++.||.++. ++..+...+.. .+++..|..+|.++..+++..|+.+
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leL  119 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence            45787777777642          113466778889998887 56667777665 5689999999999999999999999


Q ss_pred             HHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280          208 IQYLLNENA-SD-CSVVD----------KLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       208 Ls~L~~~~~-~~-~~~l~----------~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      |..+|.-.. .. ...+.          +..-...+++.++ +.+.+++..++..+-.++...+
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~  183 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  183 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence            999986543 23 22222          1134566788777 5667888888877777776655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.00  E-value=0.97  Score=50.13  Aligned_cols=174  Identities=12%  Similarity=0.160  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCC
Q 016280           76 EDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        76 ~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      |.|+..+..+++....  .-.-+-++.++.++..+......||..|..++-.++++ ||..-     ...+|.|+..+.+
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~  144 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE  144 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc
Confidence            7788888888865533  33333457788888888888899999999999998886 45332     3468999998876


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchH----HH-----
Q 016280          153 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCS----VV-----  222 (392)
Q Consensus       153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-~~~~~~----~l-----  222 (392)
                      ...=..+..|+..|..++... +.+-...-..-+|++..++......++..|...+..+|.- ++.+.+    .+     
T Consensus       145 ~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~  223 (986)
T 2iw3_A          145 TNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA  223 (986)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence            545578899999999999765 3444555678899999999999999999998888888753 112211    11     


Q ss_pred             ---------HhcC---------------chHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          223 ---------DKLG---------------FPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       223 ---------~~~G---------------~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                               ...+               ++|.|..-|......++.+++-++.||++
T Consensus       224 ~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~  280 (986)
T 2iw3_A          224 DPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK  280 (986)
T ss_dssp             CTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred             ChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence                     1111               22333344556677888888889999987

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.88  E-value=0.74  Score=43.27  Aligned_cols=185  Identities=20%  Similarity=0.257  Sum_probs=119.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC-hHHHHHc-CChHHHHH-------hhcCC--CHHH--H-HHHHHHHHHHhhCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDM-ANDLHSI-GGLAPLLG-------YLKNS--HANI--R-AKAGEVVTTIVQNNPRSQQL  136 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~l-Ggl~~Ll~-------lL~s~--~~~I--R-~~Aa~vLg~iaqNNp~~Q~~  136 (392)
                      .++.++.|+-+|..--|+.+. |--+-.. |.+..|++       .|..+  .+..  | ..|..++-.+|+ +|+.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            456789999999887777644 5555444 55555543       22222  1222  2 233333444554 7889999


Q ss_pred             HHHcCCH---HHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHH-HHcChHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016280          137 VMEANGL---EPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALGSESVKFQRKALNLIQYL  211 (392)
Q Consensus       137 vl~~g~l---~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f-~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L  211 (392)
                      |++.+..   -|++..-..+ +-+.+|-.+++.|++++....+..-.| ...+-++...+.+...+.--|..|.|.+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            9998753   4455543322 235799999999999998765554444 5678999999999999999999999999999


Q ss_pred             hhcCCcchHH-------HHhc-CchHHHH-HhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          212 LNENASDCSV-------VDKL-GFPRLML-HLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       212 ~~~~~~~~~~-------l~~~-G~v~~Lv-~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +.++ .....       |... .++..+| .+...+..-+..|+.++-..|+.+.
T Consensus       173 L~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          173 LLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             hccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            8653 22222       2222 1223333 3445677777788888777776554

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=93.80  E-value=0.06  Score=54.98  Aligned_cols=138  Identities=13%  Similarity=0.184  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhcCC-CC----hHHHHHcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhh--------------------
Q 016280           77 DMLDELQEHVESI-DM----ANDLHSIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQ--------------------  128 (392)
Q Consensus        77 ~aL~~L~~lve~i-Dn----A~d~~~lGgl~~Ll~lL~s---~~~~IR~~Aa~vLg~iaq--------------------  128 (392)
                      -++-.|.++++.. ++    ...++-.|...+++..|..   ++++|...--.+...+.+                    
T Consensus       291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L  370 (480)
T 1ho8_A          291 LCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLL  370 (480)
T ss_dssp             HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCc
Confidence            4577888888854 22    2333333445667777753   677776543333322221                    


Q ss_pred             -CCHHHHH-HHHHc----------CCHHHHHHhhCC---------CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH
Q 016280          129 -NNPRSQQ-LVMEA----------NGLEPLLSNFAS---------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA  187 (392)
Q Consensus       129 -NNp~~Q~-~vl~~----------g~l~~Ll~LL~s---------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~  187 (392)
                       -.|.... .|-..          ..+..|+++|.+         +.|+.+..-|.+=|+.+||++|.+....-+.||=.
T Consensus       371 ~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~  450 (480)
T 1ho8_A          371 CWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKA  450 (480)
T ss_dssp             CCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHH
T ss_pred             ccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHH
Confidence             1221111 12211          236889999874         24678899999999999999999998888899999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          188 ALRDALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       188 ~L~~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      .++.+|.++|+.||..|+.++..+..+
T Consensus       451 ~VM~Lm~h~d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          451 DIMELLNHSDSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988754

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.37  E-value=2.1  Score=42.22  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=89.4

Q ss_pred             HHHHHHHHcCCHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCCCHHH
Q 016280          132 RSQQLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKF  200 (392)
Q Consensus       132 ~~Q~~vl~~g~l~~Ll~LL~s----------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl  200 (392)
                      -+++ |. .+|+..|+..|..          ..+......++.||.++. ++..+...++. ..++..|..+|.+...++
T Consensus       102 WV~~-F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          102 WVQT-FG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHH-HH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHH-HH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            4444 44 6678888887741          224577788889998887 55667776665 578999999999999999


Q ss_pred             HHHHHHHHHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCCC
Q 016280          201 QRKALNLIQYLLNENA-SD-CSVVD----------KLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       201 ~~kA~~lLs~L~~~~~-~~-~~~l~----------~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.-|+.+|+.+|.-.. .+ ...+.          +..-...++..|.. .+.+++..++..+-.++...+
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence            9999999999996543 22 22222          22446778888886 678888888887777777665

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=92.93  E-value=1.6  Score=48.16  Aligned_cols=139  Identities=9%  Similarity=0.008  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh
Q 016280          114 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA  192 (392)
Q Consensus       114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l  192 (392)
                      ..|..+..+|-.++...+.   .++.. .++.|-+.+.. ..+-..+..|+||++++..........-....-++.|..+
T Consensus       428 ~~~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l  503 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence            3566788888888865542   12221 12333333332 3456788999999999986543321111122234444443


Q ss_pred             hcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          193 LGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       193 L~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ...     +.+.++..++|+++.++.--....+.+.  .+++.++..+.+++..|+.+|..+|.+++.++.
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            321     2345555688998876532111111111  356667777888899999999999999998764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.79  E-value=0.07  Score=49.77  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHH-----HHHhh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280          102 APLLGYLKNSHANIRAKAGEVV-----TTIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP  175 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vL-----g~iaq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~  175 (392)
                      +.|..+++.++..||..++.-+     ..+++ .++.++..+...-. +.++..+.+|++..||..++.+++        
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~l~-~~~l~~l~~D~d~~VR~~aa~~l~--------  171 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIP-PGRLFRFMRDEDRQVRKLVAKRLP--------  171 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSC-GGGGGGTTTCSCHHHHHHHHHHSC--------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcC-HHHHHHHHcCCCHHHHHHHHHcCC--------
Confidence            3455666667777777666432     22333 35566666555422 345555677788999998877521        


Q ss_pred             cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280          176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR  248 (392)
Q Consensus       176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~  248 (392)
                                .+.|..++++++..||..++..+                  ..+.|..++.+++..||..++.
T Consensus       172 ----------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~  216 (244)
T 1lrv_A          172 ----------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVE  216 (244)
T ss_dssp             ----------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred             ----------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence                      24556777888888888777542                  1234555566666666666653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.31  E-value=0.094  Score=48.88  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=83.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHH-----HHHhh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVV-----TTIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vL-----g~iaq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      ...+..+++++++.||..|+..+     ..+.+ .++.++..+...-... ++..|.+|++..||..++..+       +
T Consensus        76 ~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~-~L~~L~~D~d~~VR~~aA~~l-------~  147 (244)
T 1lrv_A           76 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLE-QLEQMAADRDYLVRAYVVQRI-------P  147 (244)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTG-GGGGGTTCSSHHHHHHHHHHS-------C
T ss_pred             HHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHH-HHHHHHcCCCHHHHHHHHHhc-------C
Confidence            34466788999999999999644     33344 4778888777653333 444456678999999888732       1


Q ss_pred             ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH----
Q 016280          175 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL----  250 (392)
Q Consensus       175 ~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL----  250 (392)
                                 .+.+..++++++..||..++..   +.               .+.+..++.+++..||..++..|    
T Consensus       148 -----------~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l~~~~  198 (244)
T 1lrv_A          148 -----------PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRLRGDD  198 (244)
T ss_dssp             -----------GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHCCGGG
T ss_pred             -----------HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhCCHHH
Confidence                       1345677788899999988764   10               13455678899999999888655    


Q ss_pred             -HHHHcCCChhhh
Q 016280          251 -LELAREKADGSA  262 (392)
Q Consensus       251 -~~L~~~~~~~~~  262 (392)
                       ..+..+..+.++
T Consensus       199 L~~Ll~D~d~~VR  211 (244)
T 1lrv_A          199 LLELLHDPDWTVR  211 (244)
T ss_dssp             GGGGGGCSSHHHH
T ss_pred             HHHHHcCCCHHHH
Confidence             334444444443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.24  E-value=0.91  Score=50.35  Aligned_cols=171  Identities=12%  Similarity=0.146  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH---HHHHHHHHcCCHHHHHHh
Q 016280           73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP---RSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp---~~Q~~vl~~g~l~~Ll~L  149 (392)
                      ++...+...+..++..--....+. .|.+..|.+.+.+....  +.|+.+++.+++..+   ...-.++  +.++.++..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~  103 (986)
T 2iw3_A           29 DNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTN  103 (986)
T ss_dssp             TTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHH
Confidence            455667777777766321111111 35567777777765444  999999999996442   2322233  578888888


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhc-Cc
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKL-GF  227 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-G~  227 (392)
                      +. |....||..|-+|+-+++...++..-    ..-++.|...|.+. .=..+.-|+.++..|+...+..  .-... .+
T Consensus       104 ~~-dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~--~~~~~~~~  176 (986)
T 2iw3_A          104 AG-NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ--VALRMPEL  176 (986)
T ss_dssp             TT-CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH--HHHHHHHH
T ss_pred             hc-CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH--HHHhccch
Confidence            55 46789999999999999987765322    33578888888765 4678888999999999754321  11122 57


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          228 PRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ||.+.+.+.+...+|...|..++..+++
T Consensus       177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          177 IPVLSETMWDTKKEVKAAATAAMTKATE  204 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred             hcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence            8888889999999999988888888776

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.14  E-value=1.2  Score=48.55  Aligned_cols=137  Identities=13%  Similarity=0.040  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH
Q 016280          114 NIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD  191 (392)
Q Consensus       114 ~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~  191 (392)
                      ..|..++.++-.++...+ .+-..++.  .+...+.... ...+-..+..|++++++++.+.......++. .-++.+..
T Consensus       436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~--~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~  512 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLNDYILEILAA--MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAE  512 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHHHH--HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHh
Confidence            477888888888887654 22222221  1222222211 1134568899999999999876543321111 12333333


Q ss_pred             hhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          192 ALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       192 lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.. ..++.+|..++++++.++..-..+.+.+.  .+++.|+..| +  +.++.+|..+|..+++++.
T Consensus       513 l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~  575 (971)
T 2x1g_F          513 IPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDCQ  575 (971)
T ss_dssp             SCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred             cCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence            322 24799999999999998753221111111  3455566666 2  7899999999999998765

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.13  E-value=7.6  Score=36.20  Aligned_cols=180  Identities=13%  Similarity=0.160  Sum_probs=119.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCh--HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMA--NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS  148 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA--~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~  148 (392)
                      +.+++...|....+++-+.|.+  .+|     ++.++.+...++.+||...+..|..++...+...-     ..++.|..
T Consensus        28 ~~~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~   97 (257)
T 3gs3_A           28 SPSTKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSM   97 (257)
T ss_dssp             CHHHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            4468888888888876655432  333     67777777778999999999999999866554332     24667777


Q ss_pred             hhCCCCCHHHHHHHHHHHHHhhcC-------Ccc----cHHHHHHcChHH-HHHHhhcCCCHHHHHHHHHHHHHHhh--c
Q 016280          149 NFASDPDVTVRTKALGAISSLIRH-------NKP----GIEAFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLN--E  214 (392)
Q Consensus       149 LL~s~~~~~vr~kAl~ALS~lvR~-------~~~----~~~~f~~~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~--~  214 (392)
                      ++. +.++.|.++++.+.+++-+-       ++.    .....-....+. .+...+.+.+..+|..|.-++..++.  .
T Consensus        98 Ll~-d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT  176 (257)
T 3gs3_A           98 LLR-DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQS  176 (257)
T ss_dssp             HTT-CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence            766 56899999999998887541       221    122222222222 35666788899999999988888762  1


Q ss_pred             CC--c--------------------chHHHHhc--CchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCChhh
Q 016280          215 NA--S--------------------DCSVVDKL--GFPRLMLHLASSED--PDVREAALRGLLELAREKADGS  261 (392)
Q Consensus       215 ~~--~--------------------~~~~l~~~--G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~~~  261 (392)
                      .+  .                    ....+.+.  +++..|+..+.+++  ......+++.|..|++..|.+.
T Consensus       177 ~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~  249 (257)
T 3gs3_A          177 FADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM  249 (257)
T ss_dssp             CCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             CCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence            11  0                    01222222  56777777766553  3356788888888888887654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=91.70  E-value=11  Score=37.23  Aligned_cols=174  Identities=14%  Similarity=0.162  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           73 QDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +++...|..+.+++-+.|.  ..+|     ++.++.+-..++.+||...+..|+.++...++.--     ..++.|..+|
T Consensus        40 ~~Kl~~L~q~~EL~l~~dpsLl~~f-----l~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL  109 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPTLLDNF-----LDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL  109 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGGGGGGG-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            4566777777776443332  3333     78888888889999999999999998875443322     2456677776


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh--------------H-HHHHHhhcCCCHHHHHHHHHHHHHHhh--
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--------------Y-AALRDALGSESVKFQRKALNLIQYLLN--  213 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG--------------l-~~L~~lL~s~d~kl~~kA~~lLs~L~~--  213 (392)
                      . +.++.|.++++.|.+++-+   .....++..++              + ..+...+.+.+..+|..|.-++..++.  
T Consensus       110 ~-d~d~~V~K~~I~~~tslYp---l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q  185 (386)
T 3o2t_A          110 R-DENVNVVKKAILTMTQLYK---VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL  185 (386)
T ss_dssp             T-CSSHHHHHHHHHHHHHHHH---HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred             c-CCCHHHHHHHHHHHHHHHH---HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence            5 5688999999998888753   12222222211              1 235566788899999999988888762  


Q ss_pred             c----CCc-------c--------------hHHHHh--cCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCChh
Q 016280          214 E----NAS-------D--------------CSVVDK--LGFPRLMLHLASSE--DPDVREAALRGLLELAREKADG  260 (392)
Q Consensus       214 ~----~~~-------~--------------~~~l~~--~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~~~  260 (392)
                      .    ++.       +              ...+.+  .+++..|+..+..+  +......+++.|..|++..|.+
T Consensus       186 S~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~  261 (386)
T 3o2t_A          186 SPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF  261 (386)
T ss_dssp             SCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             CCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH
Confidence            1    000       0              122222  26778888888754  3445567889999999888865

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.23  E-value=1.3  Score=42.64  Aligned_cols=105  Identities=19%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc--C----hHHHHHHhhcC---CCHHHHHHHHHHHHHHhh
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA--N----GYAALRDALGS---ESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~--g----Gl~~L~~lL~s---~d~kl~~kA~~lLs~L~~  213 (392)
                      +..|+ +... .++.++.+|...|++++||||++...+...  .    -++-|..+...   ....++.+-+..|.-|+.
T Consensus        73 L~nL~-~~~~-~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~  150 (315)
T 3qml_C           73 LANLS-LNEN-LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV  150 (315)
T ss_dssp             HHHHH-HCTT-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred             HHHHH-hhcc-CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence            44444 3233 567899999999999999999998866542  1    12223333322   235677777888888886


Q ss_pred             cCCcchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHH
Q 016280          214 ENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELA  254 (392)
Q Consensus       214 ~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~  254 (392)
                      .. .   .|.. ..+..|..++...  +.+++.+++..+..+-
T Consensus       151 ~~-~---~F~~-~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          151 TS-E---DLPI-YSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             CS-T---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             Ch-H---hhhh-ccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            53 2   1222 3446777776666  8999999999888765

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.40  E-value=7.2  Score=38.40  Aligned_cols=118  Identities=18%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             cCCHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHHH
Q 016280          140 ANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLI  208 (392)
Q Consensus       140 ~g~l~~Ll~LL~s----------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lL  208 (392)
                      .+|+..|+..|..          ..+......++.||.+++ ++..+...+.. .+++..|..+|.++..+++..++.+|
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL  124 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  124 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            4667667666531          114567788899999887 55667666655 57899999999999999999999999


Q ss_pred             HHHhhcCC-cc-hHHHH----------hcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280          209 QYLLNENA-SD-CSVVD----------KLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       209 s~L~~~~~-~~-~~~l~----------~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..+|.-.. .. ...+.          +..-...+|..+. +.+.+++..++..+-.|+...+
T Consensus       125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCC
Confidence            99986543 22 22221          2234556787776 5677888888887777777665

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=90.20  E-value=7.9  Score=36.28  Aligned_cols=144  Identities=13%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc-----CCcccH
Q 016280          103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-----HNKPGI  177 (392)
Q Consensus       103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR-----~~~~~~  177 (392)
                      -+...|.+.+-.-|..|+..|......++..-...+  +.+-+-+.+--.+++..+..+++..|..++.     ++....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l--Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNS--DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            345677777888888999999888877764322222  2232322221234688999999999998752     111111


Q ss_pred             HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .  ...--+|.|+.-+.....++|..+-.++..|..-.       --..+.+.++.-+++.+...|+-++..|.++....
T Consensus       128 ~--ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          128 E--EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             H--HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            1  11235688888888888999999988887776421       12245677888889999999999999999886644

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.12  E-value=1.5  Score=43.31  Aligned_cols=193  Identities=16%  Similarity=0.187  Sum_probs=133.2

Q ss_pred             cCcHHhhhhCCCC--HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q 016280           59 QTPEQVLESQGVT--PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL  136 (392)
Q Consensus        59 ~~~~~~l~~~~~~--~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~  136 (392)
                      .+|++...|.+..  .....++||-|--|.++.|--.-|++..|+..+...++.++.++-...+.++-..+..-.-|.-.
T Consensus       242 ~dpet~~qNpel~~LiQVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~  321 (619)
T 3c2g_A          242 QNPETLPQNPELAHLIQVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP  321 (619)
T ss_dssp             CCGGGGGGCHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC
T ss_pred             CChhcccCCHHHHHHHHHHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc
Confidence            4555554442211  13446889999888888888889999999999999999999999999999987766433222110


Q ss_pred             HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-------CCHHHHHHHHHHHH
Q 016280          137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-------ESVKFQRKALNLIQ  209 (392)
Q Consensus       137 vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-------~d~kl~~kA~~lLs  209 (392)
                        -...+|-+++.+.-.++.+|.....+-||+.+-|..+-.+.-+..|++..|-..+..       .+..-+..||..++
T Consensus       322 --L~e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Iic  399 (619)
T 3c2g_A          322 --LENILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIIC  399 (619)
T ss_dssp             --CTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHH
T ss_pred             --ccccchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHH
Confidence              114577788887766788999999999999999988888877889999998877543       13444556666666


Q ss_pred             HHhhc------------CCc-------chH---HHHhcCchHHHHHhhcCCC------hHHHHHHHHHHHHH
Q 016280          210 YLLNE------------NAS-------DCS---VVDKLGFPRLMLHLASSED------PDVREAALRGLLEL  253 (392)
Q Consensus       210 ~L~~~------------~~~-------~~~---~l~~~G~v~~Lv~LL~~~d------~~v~E~aL~aL~~L  253 (392)
                      +-++.            +..       .++   .+++..+++.|+.+|+-+.      .++|...|+...-+
T Consensus       400 N~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lv  471 (619)
T 3c2g_A          400 NCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILL  471 (619)
T ss_dssp             HHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Confidence            54421            111       122   4556678899999987432      24666666554433

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.87  E-value=0.43  Score=41.62  Aligned_cols=71  Identities=10%  Similarity=0.028  Sum_probs=57.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR  171 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR  171 (392)
                      +..|.+-|++.++.++.+|..+|-+|++|. +.++..|.....+..|+.++....++.|+.|++..|-.-..
T Consensus        54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            445667788999999999999999999994 67887777777788888887755678999999887665443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.66  E-value=2.1  Score=47.73  Aligned_cols=104  Identities=8%  Similarity=-0.045  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC---CCH--HHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280          154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---ESV--KFQRKALNLIQYLLNENASDCSVVDKLGFP  228 (392)
Q Consensus       154 ~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s---~d~--kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v  228 (392)
                      .+=..+..++||++++..+-.+....-.....++.|..++..   ++.  .++.-++|+|+..+.--..+.+.+  ..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            456789999999999997655443333355678888888753   233  445557788876653110111110  0234


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          229 RLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      ..|+..+..+++.+++.|..++.+|+.++..
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455555667789999999999999997753

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=89.14  E-value=10  Score=35.55  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhh-CCHHHHHHHHHcCCHHHHHHh
Q 016280           76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQ-NNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~-----~~~IR~~Aa~vLg~iaq-NNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      -.+|.-|+-.....|....|.+....-.|..+|+..     ..-+|-.+..+||.+++ +++++...+++.+.+|..++.
T Consensus        74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri  153 (268)
T 2fv2_A           74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI  153 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence            466777777777889999999999777777888654     35799999999999998 577888888999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHH-------HHH-HcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhh
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIE-------AFR-LANGYAALR-DALGSESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~-------~f~-~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~  213 (392)
                      +... ++--|.-|.|-+.-+.-+. .+..       .|. ....+.-++ .+...++.++.+........|+.
T Consensus       154 me~G-selSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          154 MESG-SELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HHHS-CHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             Hhhc-cHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            8874 6678888989888776442 2222       221 222333223 23344667777777666666653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=88.30  E-value=14  Score=41.11  Aligned_cols=195  Identities=9%  Similarity=0.051  Sum_probs=114.3

Q ss_pred             CCCCHHHH-HHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHH----HhhcCCCChHHHHHcCC
Q 016280           26 RNLSEEDR-RWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQ----EHVESIDMANDLHSIGG  100 (392)
Q Consensus        26 ~~~s~E~~-~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~----~lve~iDnA~d~~~lGg  100 (392)
                      +.++..+. ++|.-++....++. +.|+....+++.+...     ..+.-+..++-.+.    .+|.+-..    |....
T Consensus       368 ~~l~~~ea~~~l~~~~~~~~Pt~-e~l~~~~~l~~~~~~~-----~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~  437 (1056)
T 1lsh_A          368 EQLTSAEATQIVASTLSNQQATR-ESLSYARELLNTSFIR-----NRPILRKTAVLGYGSLVFRYCANTVS----CPDEL  437 (1056)
T ss_dssp             TCSCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTCHHHH-----TCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGG
T ss_pred             CCCCHHHHHHHHHHhhccCCCCH-HHHHHHHHHHhCcccc-----cCHHHHHHHHHHHHHHHHHHhccCCC----CCHHH
Confidence            45665543 56655554444554 6677766677665421     12222223333333    33332211    11122


Q ss_pred             hHHHHH----hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC------CCCHHHHHHHHHHHHHhh
Q 016280          101 LAPLLG----YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS------DPDVTVRTKALGAISSLI  170 (392)
Q Consensus       101 l~~Ll~----lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s------~~~~~vr~kAl~ALS~lv  170 (392)
                      ++++..    .+...+.+-+..+..+|||+-.  |         ..++.|..++..      +....+|..|++||..+.
T Consensus       438 v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~  506 (1056)
T 1lsh_A          438 LQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA  506 (1056)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh
Confidence            455544    4456677888899999999975  3         245666666531      224578899999999998


Q ss_pred             cCCcccHHHHHHcChHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHHHH
Q 016280          171 RHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAAL  247 (392)
Q Consensus       171 R~~~~~~~~f~~~gGl~~L~~lL--~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL  247 (392)
                      ...+..        .-+++.+++  ...+..+|.-|+.+|-   ..+|..       ..+..+...+.. ++.+|.-.+.
T Consensus       507 ~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~  568 (1056)
T 1lsh_A          507 KRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPSV-------ALVSMVAVRLRREPNLQVASFVY  568 (1056)
T ss_dssp             GTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCCH-------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             hhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence            665422        234567777  3467888887776652   333432       235566666654 6777888888


Q ss_pred             HHHHHHHcCCCh
Q 016280          248 RGLLELAREKAD  259 (392)
Q Consensus       248 ~aL~~L~~~~~~  259 (392)
                      +.|.+++..+.+
T Consensus       569 S~l~sla~s~~P  580 (1056)
T 1lsh_A          569 SQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHTTCCSG
T ss_pred             HHHHHHHhcCCc
Confidence            888888887754

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=88.27  E-value=7.4  Score=43.03  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=91.0

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH--HHHHcC
Q 016280          107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE--AFRLAN  184 (392)
Q Consensus       107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~--~f~~~g  184 (392)
                      ++.+.++.++..+..+|+....--|.  ..+++.+.++.++.+|..   +.+|..|+-+|..+++.......  .++..=
T Consensus       201 ~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l  275 (980)
T 3ibv_A          201 YSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNIL  275 (980)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH
Confidence            33457889999999999999875442  345666778888887754   68999999999999876543222  222221


Q ss_pred             hHHHHHHhhc--CCCHHHHHHHHHHHHHHhhc------CCc-----chHHH-Hh-cCchHHHHHhhcCCChHHHHHHHHH
Q 016280          185 GYAALRDALG--SESVKFQRKALNLIQYLLNE------NAS-----DCSVV-DK-LGFPRLMLHLASSEDPDVREAALRG  249 (392)
Q Consensus       185 Gl~~L~~lL~--s~d~kl~~kA~~lLs~L~~~------~~~-----~~~~l-~~-~G~v~~Lv~LL~~~d~~v~E~aL~a  249 (392)
                      .+..+...+.  ..|..+.++.+.++..+...      .+.     .+... .. .++++.++.++.+++.++-..++..
T Consensus       276 ~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~F  355 (980)
T 3ibv_A          276 NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPF  355 (980)
T ss_dssp             HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHH
T ss_pred             hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            2222222222  46777777777666544321      110     01111 11 2688889999999999998888877


Q ss_pred             HHHHHc
Q 016280          250 LLELAR  255 (392)
Q Consensus       250 L~~L~~  255 (392)
                      +..+.+
T Consensus       356 w~~~l~  361 (980)
T 3ibv_A          356 LSDLLV  361 (980)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}

Probab=88.07  E-value=6.5  Score=38.07  Aligned_cols=29  Identities=10%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 016280          270 EKLKQLLGERIKGISLMSPEDLGAAREER  298 (392)
Q Consensus       270 ~~L~~~L~~~~~~i~~~~~ed~~~~~ee~  298 (392)
                      .+..+.|++-+.........|.++.|.++
T Consensus       284 ~Raa~~l~eele~~GpVr~~dVE~Aq~~I  312 (329)
T 3hjl_A          284 KRAAKLFLEDMEALGPVKKSEIEKAQRQV  312 (329)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            44556666666666556677888887765

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=87.73  E-value=2  Score=39.31  Aligned_cols=73  Identities=19%  Similarity=0.229  Sum_probs=59.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      +..|.+-|++.++.++.+|..+|-++++| .+.++..|.....+..|+.++...++..|+.|++..|-.-...+
T Consensus        47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A           47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            45577788899999999999999999999 44577777777777778888776678899999988877765433

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=87.06  E-value=1.1  Score=38.41  Aligned_cols=73  Identities=11%  Similarity=0.005  Sum_probs=59.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      +..|.+-|++.++.++.+|..+|-+|++| .+.++..|.....+..|+.++..     .++..|+.|++..|-.-...+
T Consensus        40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            45566778899999999999999999999 46788888888888889998763     247899999988777655444

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=86.48  E-value=0.85  Score=40.06  Aligned_cols=73  Identities=16%  Similarity=0.077  Sum_probs=59.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      +..|.+-|++.++.++.+|..+|-+|++|. +.++..|.....+..|+.++..     ..+..|+.|++..|-.-...+
T Consensus        52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            456777889999999999999999999996 5788778887888889988752     246899999988887765444

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=85.67  E-value=7.2  Score=43.13  Aligned_cols=109  Identities=9%  Similarity=0.021  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC---CHHHHHHHHHHHH
Q 016280           48 IKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS---HANIRAKAGEVVT  124 (392)
Q Consensus        48 ~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~---~~~IR~~Aa~vLg  124 (392)
                      ++++.+++...-+|       ..+.+.+..|.+-|..+-+..         ++|.....+|.++   +..+|..|+.+|-
T Consensus         5 ~~~v~~Al~~~~~p-------~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~   68 (980)
T 3ibv_A            5 AQDVENAVEAALDP-------SVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLS   68 (980)
T ss_dssp             HHHHHHHHHHHHCT-------TSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            34555555433233       246677778877777655543         3678888888664   7899999999999


Q ss_pred             HHhhCCHHH----HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC
Q 016280          125 TIVQNNPRS----QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH  172 (392)
Q Consensus       125 ~iaqNNp~~----Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~  172 (392)
                      +..+.-+.-    +...++...+..+...-.......+|.|...+|+.++..
T Consensus        69 ~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~  120 (980)
T 3ibv_A           69 EKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ  120 (980)
T ss_dssp             HHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            888732323    444455545555544211123568999999999998765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=85.44  E-value=4.4  Score=38.71  Aligned_cols=135  Identities=10%  Similarity=0.026  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHc--CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH--HHHHHHHcCCHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSI--GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR--SQQLVMEANGLEPL  146 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l--Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~--~Q~~vl~~g~l~~L  146 (392)
                      .+.+...++..+.+++..-....-+...  -.+..+..++.+++..+|..++.++-|++--+-+  ..+....  .+..+
T Consensus       161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--ll~~l  238 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--CLSLI  238 (304)
T ss_dssp             CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--HHHHH
T ss_pred             ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHH
Confidence            4556777888888888765544333332  1222333445567999999999998887642110  0011111  34445


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcC-CCHHHHHHHHHHH
Q 016280          147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGS-ESVKFQRKALNLI  208 (392)
Q Consensus       147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s-~d~kl~~kA~~lL  208 (392)
                      ..++....+.+....++-||++++..... ...+.. .|.-..+.++..+ ...|+...+.+++
T Consensus       239 ~~il~~~~d~EalyR~LvALGtL~~~~~~-~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          239 STILEVVQDLEATFRLLVALGTLISDDSN-AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHhCChh-HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            55566667889999999999999976443 334443 4444456666654 5677777654443

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=85.36  E-value=2.3  Score=38.51  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI  170 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv  170 (392)
                      +..|.+-|.+.++.++.+|..+|-++++|. +.++..|.....+..|+.++.+.++..|+.+++..|-.-.
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  114 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA  114 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            445667788999999999999999999996 5677777777778888888776677899999887665544

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=85.33  E-value=2  Score=37.37  Aligned_cols=92  Identities=14%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC-
Q 016280          160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS-  237 (392)
Q Consensus       160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~-  237 (392)
                      ....-.|+-+++..+.+.     ..++..|.+-|.+.++.++..|+.+|-.++.+... ....+.+..++..|+.++.. 
T Consensus        33 w~~~leicD~I~~~~~~~-----keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~  107 (163)
T 1x5b_A           33 WSLIMDICDKVGSTPNGA-----KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK  107 (163)
T ss_dssp             HHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC
Confidence            344556777787655332     23566788888999999999999999999876433 34455566788888888764 


Q ss_pred             CChHHHHHHHHHHHHHHcC
Q 016280          238 EDPDVREAALRGLLELARE  256 (392)
Q Consensus       238 ~d~~v~E~aL~aL~~L~~~  256 (392)
                      .++.|+++++..|..-+..
T Consensus       108 ~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A          108 AHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            6778999998887765543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=85.02  E-value=2.1  Score=37.55  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=77.0

Q ss_pred             CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chH
Q 016280          142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCS  220 (392)
Q Consensus       142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~  220 (392)
                      .+..+|.-..++...+.-....-.|+-+++..+.+.     ..++..|.+-|++.++.++..|+.+|-.++.+... ...
T Consensus        13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~-----k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~   87 (171)
T 1juq_A           13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGP-----QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN   87 (171)
T ss_dssp             CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            355566554443222222455567888887765432     23567788889999999999999999999876433 344


Q ss_pred             HHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHHHcCC
Q 016280          221 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK  257 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .+.+..++..|+.++..      .+..|+++++..|..-+...
T Consensus        88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            56677888889988862      46789999998888766543

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=84.90  E-value=1.3  Score=38.23  Aligned_cols=70  Identities=26%  Similarity=0.240  Sum_probs=55.2

Q ss_pred             hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH-HHHhhC--CCCCHHHHHHHHHHHHHhh
Q 016280          101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFA--SDPDVTVRTKALGAISSLI  170 (392)
Q Consensus       101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~-Ll~LL~--s~~~~~vr~kAl~ALS~lv  170 (392)
                      +..|.+-|+ +.++.++.+|..+|-+|++|. +.++..|.....+.. |+.++.  .+++..|+.|++..|-.-.
T Consensus        55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~  129 (157)
T 1elk_A           55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA  129 (157)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            445667776 489999999999999999996 888888887778887 788774  3345789999987776543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=84.85  E-value=18  Score=40.41  Aligned_cols=142  Identities=10%  Similarity=0.035  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHhhCCHHHHH-HHHHcCCHHHHHHhhCCCC--CHH--HHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280          111 SHANIRAKAGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFASDP--DVT--VRTKALGAISSLIRHNKPGIEAFRLANG  185 (392)
Q Consensus       111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~-~vl~~g~l~~Ll~LL~s~~--~~~--vr~kAl~ALS~lvR~~~~~~~~f~~~gG  185 (392)
                      .+-..+..++|++|.+++.-..-.+ .++- ..++.|+.+.....  +..  ++....|.+|...|=-... ..| -..-
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~-L~~v  567 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKF-LKTV  567 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHH-HHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHH-HHHH
Confidence            3578899999999999876432222 2222 35666777654321  222  4444557777754421111 123 2335


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cC----chHHHHHhhc----CCChHHHHHHHHHHHHHHc
Q 016280          186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LG----FPRLMLHLAS----SEDPDVREAALRGLLELAR  255 (392)
Q Consensus       186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G----~v~~Lv~LL~----~~d~~v~E~aL~aL~~L~~  255 (392)
                      +..|...+..++++++.-||.++.+++...+..   ++.  .|    ++..++..+.    .=..+-......+++.++.
T Consensus       568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~---lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~  644 (1073)
T 3gjx_A          568 VNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH---FVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG  644 (1073)
T ss_dssp             HHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG---GTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH---HhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            667778888889999999999999999754432   221  12    3333333222    2234444555567777776


Q ss_pred             CCC
Q 016280          256 EKA  258 (392)
Q Consensus       256 ~~~  258 (392)
                      .-+
T Consensus       645 ~~p  647 (1073)
T 3gjx_A          645 AQT  647 (1073)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            665

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=84.43  E-value=2.8  Score=35.34  Aligned_cols=92  Identities=13%  Similarity=0.120  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhcCC
Q 016280          160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSE  238 (392)
Q Consensus       160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~~~  238 (392)
                      ....-.|+-+++..+.+..     .++..|.+-|.+.++.++..|+.+|-.++.+.... ...+.+..++..|+.++...
T Consensus        23 w~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~   97 (140)
T 3ldz_A           23 WGLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG   97 (140)
T ss_dssp             HHHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence            4456677888887654332     35777888889999999999999999998764433 33455556777788888778


Q ss_pred             ChHHHHHHHHHHHHHHcC
Q 016280          239 DPDVREAALRGLLELARE  256 (392)
Q Consensus       239 d~~v~E~aL~aL~~L~~~  256 (392)
                      +..|+++++..+..-+..
T Consensus        98 ~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           98 HPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            899999999999877653

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=83.44  E-value=31  Score=32.71  Aligned_cols=203  Identities=12%  Similarity=0.138  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHhh------CCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCC
Q 016280           27 NLSEEDRRWFMEAMQS------QTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGG  100 (392)
Q Consensus        27 ~~s~E~~~~L~~Al~~------~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGg  100 (392)
                      .|+||+..=|.+.+..      ...+. ..+.-..++++=          ..+.+.-+||.|+-.+-..+.+.-|+..+.
T Consensus        76 ~Ls~~el~~L~~l~~~l~~~s~~~~~~-~~l~~l~kil~W----------P~~~~fPvLDLlRl~~l~p~~~~~~~~~~~  144 (304)
T 3ebb_A           76 KLTEDDLILLEKILSLICNSSSEKPTV-QQLQILWKAINC----------PEDIVFPALDILRLSIKHPSVNENFCNEKE  144 (304)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSSCCCH-HHHHHHHHHHTS----------CTTTCHHHHHHHHHHTTSHHHHHHHHSTTT
T ss_pred             CcCHHHHHHHHHHHHHHhccCCCccch-HHHHHHHHHHcC----------CHHhHHHHHHHHHHHHcCccHHHHhhcccc
Confidence            5888887777665542      11222 122222222221          234455677777766655444555554433


Q ss_pred             hHHHH----HhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc--
Q 016280          101 LAPLL----GYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIR--  171 (392)
Q Consensus       101 l~~Ll----~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR--  171 (392)
                      -..++    ..+.+ ..+..+..++.+++|+..+.. .++.++..  ..+..+...+. +.+..+|..+...+=|++-  
T Consensus       145 ~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~~~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~  222 (304)
T 3ebb_A          145 GAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQKLMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCF  222 (304)
T ss_dssp             HHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HHHHHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHH
Confidence            33333    33332 456679999999999998754 55555543  22333333333 3577888777655554432  


Q ss_pred             -CCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHH
Q 016280          172 -HNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREA  245 (392)
Q Consensus       172 -~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~  245 (392)
                       ... ....  ..--+..+..++.. .+....-+++-+|..|+..+.+-++.....|+-..+-.+... ....|.|.
T Consensus       223 ~~~~-~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~  296 (304)
T 3ebb_A          223 HKDH-NIEG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC  296 (304)
T ss_dssp             HHSC-CHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred             hhcC-CchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence             111 1111  11133444455543 578888889999999997654444444455655544444443 33344443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.40  E-value=3.1  Score=35.52  Aligned_cols=92  Identities=16%  Similarity=0.132  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC--
Q 016280          161 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS--  237 (392)
Q Consensus       161 kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~--  237 (392)
                      ...-.|+-+++..+.+     -..++..|.+-|++.++.++..|+.+|-.++.+... ....+.+..++..|+.++..  
T Consensus        20 ~~~leicD~I~~~~~~-----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~   94 (148)
T 1mhq_A           20 SAIQNFCEQVNTDPNG-----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKY   94 (148)
T ss_dssp             HHHHHHHHHHHHSSHH-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCST
T ss_pred             HHHHHHHHHHHcCCcc-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence            4455677777765432     233577788888999999999999999999976443 34566677889999998873  


Q ss_pred             ----CChHHHHHHHHHHHHHHcCC
Q 016280          238 ----EDPDVREAALRGLLELAREK  257 (392)
Q Consensus       238 ----~d~~v~E~aL~aL~~L~~~~  257 (392)
                          .+..|+++++..|..-+...
T Consensus        95 ~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           95 LGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHc
Confidence                47899999999998876654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=83.10  E-value=2.2  Score=36.58  Aligned_cols=74  Identities=16%  Similarity=0.055  Sum_probs=59.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..|.+-|++.++.++.+|..+|-+|++|. +.++..|.....+..|++++..     .++..|+.|++..|-+-...++
T Consensus        50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  129 (149)
T 3g2s_A           50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  129 (149)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            456667788999999999999999999995 4677777777888889988763     2578999999988887665443

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.25  E-value=6.8  Score=33.43  Aligned_cols=111  Identities=13%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hH
Q 016280          142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CS  220 (392)
Q Consensus       142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~  220 (392)
                      .+..+|.-..++...+.-..+.-.|+-+++..+.+..     .++..|.+-+.+.++.++..|+.+|-.++.+.... ..
T Consensus        11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~   85 (149)
T 3g2s_A           11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD   85 (149)
T ss_dssp             CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3555565544433222235566778888887654332     36678888889999999999999999998765443 34


Q ss_pred             HHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHHHcCC
Q 016280          221 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK  257 (392)
Q Consensus       221 ~l~~~G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .+.+..++..|+.++..      .+..|+++++..|..-+...
T Consensus        86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            56666788889988863      57899999999999887755

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=81.63  E-value=1.3  Score=37.48  Aligned_cols=69  Identities=10%  Similarity=0.040  Sum_probs=54.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI  170 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv  170 (392)
                      +..|.+-|.+.++.++.+|..+|-+|++|. +.++..|.....+..|+.++.. .++.|+.+++..|-+-.
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence            556667788999999999999999999995 5677666666667777777654 57899999988776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-37
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-05
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-05
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.002
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 5e-37
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 10/267 (3%)

Query: 48  IKRMKEITLVMQTPEQVLES---QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPL 104
           +++MK    V+  P         Q    Q+ E  L+ L +  E++D A D   + G+  L
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLL 63

Query: 105 LG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 163
           +G YL+   A +R +A +++ T  QN    Q+ V+    L  LL     D   TVR KAL
Sbjct: 64  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 123

Query: 164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 223
            AIS L+R  + G+  F   +G++ L  A+  +  K + K+  L+Q LL  +      + 
Sbjct: 124 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 183

Query: 224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGI 283
            +G  + ++ L  +E     E  L  L  L  +   G      E    L++LL  R + +
Sbjct: 184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHRCQLL 242

Query: 284 SLMSPEDLGAAREERHLVDSLWNACYN 310
                +     +EE    + L   C++
Sbjct: 243 -----QQHEEYQEELEFCEKLLQTCFS 264

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 28/241 (11%), Positives = 78/241 (32%), Gaps = 15/241 (6%)

Query: 99  GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTV 158
           GG+  L+  L++ + N++  A   +  +V  +  ++      NG+   +S      +  +
Sbjct: 44  GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI 103

Query: 159 RTKALGAISSLIRHNKPGIEAFRLAN--------------GYAALRDALGSESVKFQRKA 204
           + +  G + +L   ++   E    A                      +      +    A
Sbjct: 104 QKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163

Query: 205 LNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 264
              ++ L + +A   ++ +  G    ++    +     R    + +        + S   
Sbjct: 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR-CDDKSVENCMCVLHNLSYRL 222

Query: 265 LAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP 324
            AE   + +QL        +  S     + + ++ + ++       E ++ +  G L   
Sbjct: 223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282

Query: 325 G 325
            
Sbjct: 283 D 283

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 193 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252
           L S+  K+Q      IQ+   ++ S    V +LG    ++ L  S + +V++AA   L  
Sbjct: 11  LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70

Query: 253 LAREKAD 259
           L      
Sbjct: 71  LVFRSTT 77

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 23/190 (12%)

Query: 65  LESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVT 124
           L         I+  +  ++           L   G +  L+  L  +H + + +     T
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422

Query: 125 TIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN 184
                     + ++E  G    L   A D    +  + L  I   ++             
Sbjct: 423 QQQFVEGVRMEEIVE--GCTGALHILARDVHNRIVIRGLNTIPLFVQL------------ 468

Query: 185 GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVRE 244
                   L S     QR A  ++   L ++      ++  G    +  L  S +  V  
Sbjct: 469 --------LYSPIENIQRVAAGVL-CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 245 AALRGLLELA 254
            A   L  ++
Sbjct: 520 YAAAVLFRMS 529

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 88  SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147
             D    + + G +  L+G L  +    + +A   +T         Q + +   G+   L
Sbjct: 303 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 362

Query: 148 SNFASDPDVTVRTKALGAISSLIR------HNKPGIEAFRLANGYAALRDALGSESVKFQ 201
            N  S  D  +    L AIS++ +        +          G   +      E+    
Sbjct: 363 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVY 422

Query: 202 RKALNLIQ 209
           + +LNLI+
Sbjct: 423 KASLNLIE 430

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 127  VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186
            + ++     L      +  LL       +   R      +  L   +   +         
Sbjct: 913  IISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLP------- 965

Query: 187  AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAA 246
              L+  L S S   +   +  +++ ++++      + K      +  L    D +VR  A
Sbjct: 966  -RLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL-EDPDLNVRRVA 1023

Query: 247  LRGLLELAREKAD 259
            L      A  K  
Sbjct: 1024 LVTFNSAAHNKPS 1036

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 18/186 (9%)

Query: 29   SEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVES 88
            SEE +     A+ S +V  +       L      Q + SQ      +   L E+      
Sbjct: 866  SEEVKSAASYALGSISVGNLPEYLPFVL------QEITSQPKRQYLLLHSLKEIISSASV 919

Query: 89   IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148
            + +   + +I   A LL + + +    R    E +  +   +P           L P L 
Sbjct: 920  VGLKPYVENI--WALLLKHCECAEEGTRNVVAECLGKLTLIDP---------ETLLPRLK 968

Query: 149  NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLI 208
             +        R+  + A+   I  +   I+   L N        L    +  +R AL   
Sbjct: 969  GYLISGSSYARSSVVTAVKFTISDHPQPIDPL-LKNCIGDFLKTLEDPDLNVRRVALVTF 1027

Query: 209  QYLLNE 214
                + 
Sbjct: 1028 NSAAHN 1033

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 7e-05
 Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 160
           ++ LL  + +S  + R  A   + T +Q +        E   ++ +L     D +  V+ 
Sbjct: 5   ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQN 63

Query: 161 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE------ 214
            A+  +  L+   K   +   + +    L   + S+  + +  +   ++ ++ E      
Sbjct: 64  LAVKCLGPLVSKVKE-YQVETIVD---TLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119

Query: 215 NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQ 274
            ++  + V K    RL   +A  ED  V+  AL  + ++   +              L  
Sbjct: 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 179

Query: 275 LLGE 278
            L  
Sbjct: 180 QLTS 183

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 77  DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL 136
             ++ L E          +     L  +L    +  AN+R    + +  I      S   
Sbjct: 502 FCINVLSEVCGQDITTKHM-----LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL- 555

Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSL 169
               + ++P+L     D DV V+  A  A++ L
Sbjct: 556 ---QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.81
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.76
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.74
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.62
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.28
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.19
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.16
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.09
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.07
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.07
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.99
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.95
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.93
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.91
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.73
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.54
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.54
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.42
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.26
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.19
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.13
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.09
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	95.66
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.7
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.44
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.03
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.88
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.85
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.77
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.66
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	91.19
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	90.64
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	89.98
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.93
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.43
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	88.6
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	88.57
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	83.91
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	82.31
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	80.25

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-38  Score=295.96  Aligned_cols=259  Identities=27%  Similarity=0.370  Sum_probs=234.2

Q ss_pred             cHHHHHHHHHHHhcCcHHhh---hhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHH-hhcCCCHHHHHHHHH
Q 016280           46 DVIKRMKEITLVMQTPEQVL---ESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGE  121 (392)
Q Consensus        46 D~~~~mk~~~~~l~~~~~~l---~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~-lL~s~~~~IR~~Aa~  121 (392)
                      +++|+||+++.++.++....   ..++.+.++++.|++.|.+|+++.|||++|+++||+++++. +|+++++++|..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~   81 (264)
T d1xqra1           2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ   81 (264)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            47899999999998763211   11223568889999999999999999999999999999985 788999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHH
Q 016280          122 VVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ  201 (392)
Q Consensus       122 vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~  201 (392)
                      +|+++++|||.+|..+++.|++++|+.++.++.++.++.+|++||++++++++..+..|...||++.|+++|.+.+.+++
T Consensus        82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~  161 (264)
T d1xqra1          82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK  161 (264)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHH
Confidence            99999999999999999999999999999887889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHh
Q 016280          202 RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIK  281 (392)
Q Consensus       202 ~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~  281 (392)
                      .+++++|.+|+..++..+..+.+.|+++.|+.+|.+++..+|+.|+.+|.+|+.+++.....+ ......++..|.++.+
T Consensus       162 ~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~~~l~~~~~L~~~~~  240 (264)
T d1xqra1         162 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC-REPELGLEELLRHRCQ  240 (264)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH-HCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHH-HHhhhhHHHHHHHHHH
Confidence            999999999999889999999999999999999999999999999999999999998776666 5556677888988888


Q ss_pred             hhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280          282 GISLMSPEDLGAAREERHLVDSLWNACYN  310 (392)
Q Consensus       282 ~i~~~~~ed~~~~~ee~~~~~~L~~~~f~  310 (392)
                      .+...     ++++|++++|+.||++||+
T Consensus       241 ~~~~~-----~~~~e~~~~~~~ll~~~~~  264 (264)
T d1xqra1         241 LLQQH-----EEYQEELEFCEKLLQTCFS  264 (264)
T ss_dssp             HHTTC-----GGGHHHHHHHHHHHHHHCC
T ss_pred             hccch-----HHHHHHHHHHHHHHHHhcC
Confidence            77642     4589999999999999996

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.1e-18  Score=174.77  Aligned_cols=252  Identities=16%  Similarity=0.173  Sum_probs=199.4

Q ss_pred             CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +.+-...++..|.+++... +....+...|+++.++.+|.+++.+++..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus       133 ~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~l  212 (503)
T d1wa5b_         133 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  212 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhh
Confidence            3445567899999988754 456778899999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      +.+ .+..++..++|+|++++++..+........++++.|..++.+.+..++..++|+|++|+...+.....+.+.|+++
T Consensus       213 l~~-~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  291 (503)
T d1wa5b_         213 FNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  291 (503)
T ss_dssp             GGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             ccc-CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhh
Confidence            876 4678999999999999998766666666789999999999999999999999999999987777778899999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHH-----------HHhhhcCCChhhHHHHHHH
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGE-----------RIKGISLMSPEDLGAAREE  297 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~-----------~~~~i~~~~~ed~~~~~ee  297 (392)
                      .++.++.+++..++..++.+|.+++.+.+....... .+....|..++.+           -+..+-..+.+....+.+ 
T Consensus       292 ~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~-  370 (503)
T d1wa5b_         292 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID-  370 (503)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-
T ss_pred             hhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHH-
Confidence            999999999999999999999999988764322111 2334444443332           222333334444333333 


Q ss_pred             HHHHHHHHHHHhCCCccccccceeecc
Q 016280          298 RHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       298 ~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      ..++..|+..+-.....++++++|+|.
T Consensus       371 ~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         371 ANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             TTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ccccchhHHhcccCChhHHHHHHHHHH
Confidence            245566666666666677888777653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=4.6e-17  Score=162.82  Aligned_cols=261  Identities=10%  Similarity=0.068  Sum_probs=203.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCC--ChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESID--MANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iD--nA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +.+....++..+..++..-.  ....+.+.|+++.|+.+|.+ .+..++..|+|+|++++..++.....+.+.|+++.|+
T Consensus        89 ~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~  168 (503)
T d1wa5b_          89 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI  168 (503)
T ss_dssp             SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence            55667788888888775443  35788999999999999975 5788999999999999999888888899999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF  227 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~  227 (392)
                      .+|.+ .+..++..|+|+|++++..++.....+...|+++.|+.++.+.+..++..++|+|++|+.............++
T Consensus       169 ~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~  247 (503)
T d1wa5b_         169 QLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA  247 (503)
T ss_dssp             HHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred             HHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            99887 57899999999999999888888889999999999999999999999999999999999766555556666789


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhh------------hhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHH
Q 016280          228 PRLMLHLASSEDPDVREAALRGLLELAREKADGSA------------IKLAEDNEKLKQLLGERIKGISLMSPEDLGAAR  295 (392)
Q Consensus       228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~------------~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~  295 (392)
                      ++.++.++.+.+.+++..++.+|..++.+.+....            .++.+....+....-.-+..+...+.+....+.
T Consensus       248 l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~  327 (503)
T d1wa5b_         248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  327 (503)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999987763211            111222222222222333344433333333333


Q ss_pred             HHHHHHHHHHHHHhCCCccccccceeeccCCCCCCccc
Q 016280          296 EERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDV  333 (392)
Q Consensus       296 ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  333 (392)
                       +..+++.|...+.+....+|++++|+|..=-+-.|+.
T Consensus       328 -~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~  364 (503)
T d1wa5b_         328 -NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ  364 (503)
T ss_dssp             -HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             -ccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHH
Confidence             3466788888888888899999999987544444443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=7.3e-17  Score=156.51  Aligned_cols=252  Identities=14%  Similarity=0.149  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           72 PQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++-+..++..|..++... ++...+.+.|++++++.+|.+++.+++..|+++|++++.+++.+++.+.+.|++..|+.++
T Consensus        71 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l  150 (434)
T d1q1sc_          71 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL  150 (434)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHH
Confidence            345667889999987654 4577889999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC----CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280          151 ASDP----DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG  226 (392)
Q Consensus       151 ~s~~----~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G  226 (392)
                      ....    .......+.+++++++++...........+.++.|..++.+++..++..|+++|++|+...+.....+.+.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  230 (434)
T d1q1sc_         151 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG  230 (434)
T ss_dssp             CSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred             HhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcc
Confidence            7643    245667889999999998776666666788999999999999999999999999999987667777888999


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhh------------hhhhhHHHHHHHHHHHHhhhcCCChhhHHHH
Q 016280          227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAI------------KLAEDNEKLKQLLGERIKGISLMSPEDLGAA  294 (392)
Q Consensus       227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~------------~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~  294 (392)
                      +++.++.++.+++..++..++.+|.+++.+++.....            ++.++...++...-..+..+-..+.+....+
T Consensus       231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  310 (434)
T d1q1sc_         231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV  310 (434)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHH
Confidence            9999999999999999999999999999877633211            1122233333322233333332233332223


Q ss_pred             HHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          295 REERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       295 ~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      .+ ..++..|++...+....+|++++|+|.
T Consensus       311 ~~-~~~i~~li~~l~~~~~~v~~~a~~~l~  339 (434)
T d1q1sc_         311 VN-HGLVPFLVGVLSKADFKTQKEAAWAIT  339 (434)
T ss_dssp             HH-TTCHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             hh-hhhHHHHHHHHhccChHHHHHHHHHHH
Confidence            32 356778888888888889999988875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.7e-17  Score=162.89  Aligned_cols=186  Identities=12%  Similarity=0.102  Sum_probs=171.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      +.+-++.+...|.+++.+.++...+++.||+++|+.+|.+++++++..|+++|++++.+++..|..+.+.|++++|+.+|
T Consensus        73 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL  152 (529)
T d1jdha_          73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL  152 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR  229 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~  229 (392)
                      .+ .+..++..++++|.+++.++......+...||++.|+.++.. +...++..++.++.+++. +++.+..+++.|+++
T Consensus       153 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~  230 (529)
T d1jdha_         153 NK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  230 (529)
T ss_dssp             GC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHH
T ss_pred             Hc-cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhh
Confidence            76 578999999999999999888888889999999999999965 557899999999999975 567788899999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          230 LMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .|+.++.+++..+++.++.+|.+++....
T Consensus       231 ~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         231 ALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             hHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            99999999999999999999999986654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.2e-16  Score=155.02  Aligned_cols=252  Identities=12%  Similarity=0.133  Sum_probs=189.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           71 TPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      +++....|+..|..++..-.|  ...+.+.|++++|+++|++ +++++|..|+|+|++++..++.....+++.|+++.|+
T Consensus        26 ~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~  105 (434)
T d1q1sc_          26 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI  105 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhh
Confidence            567777888889888765555  3678999999999999975 5789999999999999999888888999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCCcchHHH
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-----VKFQRKALNLIQYLLNENASDCSVV  222 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-----~kl~~kA~~lLs~L~~~~~~~~~~l  222 (392)
                      .+|.+ ++..++..|++||++++.+++.....+...|++..|+.++...+     ....+.+++++++++..........
T Consensus       106 ~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  184 (434)
T d1q1sc_         106 SLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  184 (434)
T ss_dssp             HHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHH
T ss_pred             hcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhh
Confidence            99877 57899999999999999888877888889999999999998753     4667788999999987665555566


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh-hhhhHHHHHHHHH-----------HHHhhhcCCChhh
Q 016280          223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK-LAEDNEKLKQLLG-----------ERIKGISLMSPED  290 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~-~~~~~~~L~~~L~-----------~~~~~i~~~~~ed  290 (392)
                      ...++++.++.++.+++.+++..++.+|.+++.+.+...... ..+....|.+++.           .-+..+-..+.+-
T Consensus       185 ~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~  264 (434)
T d1q1sc_         185 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  264 (434)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHH
Confidence            677889999999999999999999999999988765321110 0122333333332           1222222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280          291 LGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP  324 (392)
Q Consensus       291 ~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~  324 (392)
                      ...+.+ ...+..|.....+.+..+|+.++|+|.
T Consensus       265 ~~~~~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~  297 (434)
T d1q1sc_         265 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMS  297 (434)
T ss_dssp             HHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHh-ccccchHHHhhcccchhhhHHHHHHHh
Confidence            122222 234556666666777777777777654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.6e-16  Score=142.88  Aligned_cols=150  Identities=14%  Similarity=0.096  Sum_probs=135.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHH
Q 016280          109 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA  188 (392)
Q Consensus       109 ~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~  188 (392)
                      .+.+.+.|..|+.+|..++.+ ......+.+.||+++|+..+.++++.++|..|+++|++++++++..+..+...||++.
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          27 QAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            455778999999999999965 5566779999999999976555578999999999999999999989999999999999


Q ss_pred             HHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280          189 LRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD  259 (392)
Q Consensus       189 L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~  259 (392)
                      |+.++. ..+..++.+|+++|++|+.+++..+..+.+.|+++.|+.++.+++..++..++.+|.+++...+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~  177 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE  177 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHH
Confidence            999996 46799999999999999998888889999999999999999999999999999999999887653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.3e-15  Score=146.51  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=142.6

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc
Q 016280           98 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG  176 (392)
Q Consensus        98 lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~  176 (392)
                      .+.+|.|+++|++.+..+|..|+.+++.++.+++.. ..++. .|+++.|+.+|.+..+..++..|+.+|..++. ++..
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~   93 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREG   93 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHH-HHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            477999999999999999999999999999775544 44554 46799999999876788999999999999986 4567


Q ss_pred             HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280          177 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE  256 (392)
Q Consensus       177 ~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~  256 (392)
                      ...+++.||++.|+.+|++++.+++..|+++|.+|+.+++..+..+.+.|+++.|+.+|++++..+++.++.+|.+++..
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence            78888999999999999999999999999999999988888888899999999999999999999999999999999987


Q ss_pred             CC
Q 016280          257 KA  258 (392)
Q Consensus       257 ~~  258 (392)
                      +.
T Consensus       174 ~~  175 (529)
T d1jdha_         174 NQ  175 (529)
T ss_dssp             CH
T ss_pred             hh
Confidence            65

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-14  Score=136.39  Aligned_cols=179  Identities=17%  Similarity=0.164  Sum_probs=142.3

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      +.+|.|+.+|.++++++|..|+++|++++.+|+..|+.|.+.|++|+|+++|.+ +++.+|..|++||.+++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            357999999999999999999999999999999999999999999999999876 5889999999999999999998999


Q ss_pred             HHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh---------------cCCChHH
Q 016280          179 AFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA---------------SSEDPDV  242 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL---------------~~~d~~v  242 (392)
                      .+...||++.|+.++.+ .+..++..|+++|.+|+... .....+...|+.+.+..++               ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999998865 67899999999999999754 4444444555444433332               3557889


Q ss_pred             HHHHHHHHHHHHcCCChh--hhhhhhhhHHHHHHHHHHHH
Q 016280          243 REAALRGLLELAREKADG--SAIKLAEDNEKLKQLLGERI  280 (392)
Q Consensus       243 ~E~aL~aL~~L~~~~~~~--~~~~~~~~~~~L~~~L~~~~  280 (392)
                      ++.++.+|..++.+....  .... .+....|...+....
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~-~~~i~~l~~ll~~~~  198 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQNCV  198 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHH-hccHHHHHHHHhcch
Confidence            999999999988765421  1111 233445555555443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-13  Score=129.21  Aligned_cols=164  Identities=12%  Similarity=0.147  Sum_probs=136.4

Q ss_pred             CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280           71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN  149 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L  149 (392)
                      +++-+..+...|.++|. +-++...+.+.||+++|+++|+++++++|..|+++|++++..++.+|..+.+.|+++.|+.+
T Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~   94 (457)
T d1xm9a1          15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL   94 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHH
Confidence            56788899999999985 56789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh----------------cCCCHHHHHHHHHHHHHHhh
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL----------------GSESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL----------------~s~d~kl~~kA~~lLs~L~~  213 (392)
                      +.+..+..++..|+++|.+++.+.. ....+... |++.+...+                ...+..++..+++++.+++.
T Consensus        95 l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~  172 (457)
T d1xm9a1          95 LRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS  172 (457)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred             HhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhc
Confidence            9887889999999999999998754 44445444 444444333                33578999999999999987


Q ss_pred             cCCcchHHHHhcCchHHHHHhhc
Q 016280          214 ENASDCSVVDKLGFPRLMLHLAS  236 (392)
Q Consensus       214 ~~~~~~~~l~~~G~v~~Lv~LL~  236 (392)
                      ........+...|+++.++.++.
T Consensus       173 ~~~~~~~~~~~~~~i~~l~~ll~  195 (457)
T d1xm9a1         173 ADAGRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred             CchHHHHHHHHhccHHHHHHHHh
Confidence            64444445556688999998876

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.19  E-value=7.6e-08  Score=76.59  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH
Q 016280          108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA  187 (392)
Q Consensus       108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~  187 (392)
                      |.++++.||..|++.||.+.            ..++++|+.+|.+ ++..+|..|+++|+.+..           ...++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSN-EDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            45678889999999988652            1357889988775 689999999999986531           23578


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 016280          188 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL  251 (392)
Q Consensus       188 ~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~  251 (392)
                      .|..+|++++..+|..|+++|..+-.           .+.++.|..++.+++..+|..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999988732           235778888999999999999998874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.8e-05  Score=78.48  Aligned_cols=173  Identities=20%  Similarity=0.166  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280           73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS  152 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s  152 (392)
                      +.+..+.+.|..+++.+......  ...++++..++.+++..||..|+.+++.+++..+..   .++. .+.+++.-|.+
T Consensus        63 ev~~~~~~~l~~~~~~~~~~~~~--~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~-~l~p~i~~L~~  136 (588)
T d1b3ua_          63 EVLLALAEQLGTFTTLVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEA-HFVPLVKRLAG  136 (588)
T ss_dssp             HHHHHHHHHHTTCSGGGTSGGGG--GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHH-THHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCChhHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHH-HHHHHHHHHhc
Confidence            33444555555554433222211  122567777888899999999999999999864422   1232 34445544444


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 016280          153 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML  232 (392)
Q Consensus       153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv  232 (392)
                      +.....|..|...++.+.........    ..-++.+..++++.++.+|..|+..+..++..-..   ......+++.+.
T Consensus       137 ~~~~~~r~~a~~ll~~~~~~~~~~~~----~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~  209 (588)
T d1b3ua_         137 GDWFTSRTSACGLFSVCYPRVSSAVK----AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFS  209 (588)
T ss_dssp             CSSHHHHHHHGGGHHHHTTTSCHHHH----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHH
Confidence            45678889898888888765443221    22467788889999999999999999999865322   233456778888


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          233 HLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       233 ~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .++.+++..+|..++.++..++...+
T Consensus       210 ~l~~d~~~~vr~~a~~~l~~i~~~~~  235 (588)
T d1b3ua_         210 NLASDEQDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             HHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred             HHhcCCchhhHHHHHHHHHHhhccCC
Confidence            89999999999999999999887554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=5.8e-05  Score=66.67  Aligned_cols=133  Identities=11%  Similarity=0.019  Sum_probs=81.2

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280           98 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus        98 lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      -.-.+.|+++|+++++.+|..|+.+|+.+.  ++         .+++.|+.++.+ +++.+|..|+.+|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccc-c
Confidence            334556778888888888888888887663  22         235667776654 5777888888888776433221 1


Q ss_pred             HHHHHcChHHH-HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280          178 EAFRLANGYAA-LRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL  253 (392)
Q Consensus       178 ~~f~~~gGl~~-L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L  253 (392)
                      ..     .+.. +..++.+++..++..|+.+|..+....+....     .+++.+...+.+++..++..++.++..+
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            11     1222 33445667788888888888777654332211     2455566666666667776666665544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.2e-05  Score=79.80  Aligned_cols=144  Identities=15%  Similarity=0.112  Sum_probs=107.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      .+.++.+|..+...||..|+++++.+++....  + ......++.++.++. +++..+|..++++++.+....+.   .+
T Consensus       443 ~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~-~~~~~i~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~---~~  515 (588)
T d1b3ua_         443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--E-WAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQ---DI  515 (588)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--H-HHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--H-HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCh---HH
Confidence            34566788888999999999999999875321  1 122346777887754 46788999999999998764432   23


Q ss_pred             HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280          181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA  254 (392)
Q Consensus       181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~  254 (392)
                      ....-++.|.+++.++.+.||..++.+|..+....+.   ...+..+.+.+..|+.++|.+||..|..||..|+
T Consensus       516 ~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc---HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999754322   2233445677778888999999999999988764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=0.00011  Score=64.88  Aligned_cols=155  Identities=12%  Similarity=0.013  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF  150 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL  150 (392)
                      ++..+..|...|..+-.          -..++.|+.+|+++++.+|..|+++|+.+..... ....     .++.|+..+
T Consensus        32 ~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~-~~~~-----~~~~l~~~~   95 (276)
T d1oyza_          32 NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CEDN-----VFNILNNMA   95 (276)
T ss_dssp             SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THHH-----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cccc-----hHHHHHHHH
Confidence            45667777777765421          1347889999999999999999999999876433 2221     244566666


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280          151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL  230 (392)
Q Consensus       151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~  230 (392)
                      .++++..+|..|+++|+.++.+.+....     ..++.+...+.+++..++..|+.++..+..           ...++.
T Consensus        96 l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----------~~~~~~  159 (276)
T d1oyza_          96 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL  159 (276)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred             hcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcch-----------HHHHHH
Confidence            6678899999999999999876543222     246678888888888998888877665431           234455


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          231 MLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +..++...+..++..+..++..+....
T Consensus       160 l~~l~~~~~~~~~~~~~~~~~~~~~~~  186 (276)
T d1oyza_         160 LINLLKDPNGDVRNWAAFAININKYDN  186 (276)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcccccchhhhhHHHHHHhhhccc
Confidence            666666666666666666665554444

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.95  E-value=4.3e-06  Score=65.99  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE  178 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~  178 (392)
                      .++++|+.+|.++++.+|..|+++||.+.  .+         ++++.|+.+|.+ +++.||..|++||+.+-  .     
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~VR~~a~~aL~~i~--~-----   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEPLIKLLED-DSGFVRSGAARSLEQIG--G-----   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHC--S-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hh---------hhHHHHHhhhcc-chhHHHHHHHHHHHHhC--c-----
Confidence            46889999999999999999999999764  22         246788888764 68899999999999862  1     


Q ss_pred             HHHHcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 016280          179 AFRLANGYAALRDALGSESVKFQRKALNLIQ  209 (392)
Q Consensus       179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs  209 (392)
                          ...++.|..++.+++..+|..|+.+|.
T Consensus        83 ----~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ----ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ----cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                245788899999999999999887763

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.3e-05  Score=82.66  Aligned_cols=181  Identities=15%  Similarity=0.100  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH---------------HHH
Q 016280           72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS---------------QQL  136 (392)
Q Consensus        72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~---------------Q~~  136 (392)
                      ...+..++..|.++....+....   ......++..+.+++.+||..|+.++|.++..|+..               |..
T Consensus       829 ~~~~~~al~~Lge~~~~~~~~~~---~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~  905 (1207)
T d1u6gc_         829 DSIRLLALLSLGEVGHHIDLSGQ---LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYL  905 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSC---THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHH
Confidence            34455556666555543332110   012456778899999999999999999998766421               111


Q ss_pred             -------HHHc-C------CHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHH
Q 016280          137 -------VMEA-N------GLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVK  199 (392)
Q Consensus       137 -------vl~~-g------~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~k  199 (392)
                             ++.. +      .++.++..|.   .+.+..+|..+..+|+.++..++.        .-++.|...+.+++..
T Consensus       906 ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~  977 (1207)
T d1u6gc_         906 LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSY  977 (1207)
T ss_dssp             HHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHH
Confidence                   1111 1      1233333321   224567888888888888765553        2478888999999999


Q ss_pred             HHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh
Q 016280          200 FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK  264 (392)
Q Consensus       200 l~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~  264 (392)
                      +|.-|+.++.+++.+.+......+. .+++.++..|.+++..+|..|+.+|..++.+.+..+..+
T Consensus       978 ~r~~ai~~l~~~~~~~~~~~~~~l~-~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~ 1041 (1207)
T d1u6gc_         978 ARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1041 (1207)
T ss_dssp             HHHHHHHHTGGGCCSSCCTHHHHHH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            9999999999999765554433332 356667788899999999999999999999888666644

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.2e-05  Score=81.05  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=102.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc-HHHHHH
Q 016280          104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-IEAFRL  182 (392)
Q Consensus       104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~-~~~f~~  182 (392)
                      +...+.+++..+|..|+.++|.++......-...+. ..++.|+..+. ++++.||..|+|+|+.++...... ...+ .
T Consensus       400 l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~  476 (888)
T d1qbkb_         400 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTY-L  476 (888)
T ss_dssp             HHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHHHH-T
T ss_pred             HHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhhhh-h
Confidence            335667889999999999999999765533222222 24677777765 578999999999999887543222 2233 4


Q ss_pred             cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ...++.|...+.+.+.+++..|+++|..++...... ...+  ..+++.++..+...+...+..++.++..++.
T Consensus       477 ~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            567888888899999999999999999998543222 1111  1356677777777777766666666666653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00025  Score=73.95  Aligned_cols=185  Identities=12%  Similarity=0.114  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhhcCCCC-hHHHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHh
Q 016280           73 QDIEDMLDELQEHVESIDM-ANDLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSN  149 (392)
Q Consensus        73 e~~~~aL~~L~~lve~iDn-A~d~~~-lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~L  149 (392)
                      +-...+++.+..+++.+.. -..++. ...++.++.++++.++++|..|..++|.++...+. ++. .+. ..++.|+..
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~-~l~-~~~~~l~~~  714 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKP-CIA-DFMPILGTN  714 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGG-GHH-HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHH-HHH-HHHHHHHHH
Confidence            3445667777666664432 233333 33456667889999999999999999998875442 222 111 245667776


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280          150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGF  227 (392)
Q Consensus       150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d--~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~  227 (392)
                      |.. ....++..|+|+++-+++........+ -..-++.|+.+++.++  ..++..++.+|..|+...++...-... -+
T Consensus       715 L~~-~~~~v~~~a~~~ig~ia~~~~~~~~py-~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-~~  791 (888)
T d1qbkb_         715 LNP-EFISVCNNATWAIGEISIQMGIEMQPY-IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-QF  791 (888)
T ss_dssp             CCG-GGHHHHHHHHHHHHHHHHHTGGGGGGG-SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-GT
T ss_pred             hCc-CCHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-HH
Confidence            655 467899999999999998765544433 2357888999998653  669999999999998766653322222 24


Q ss_pred             hHHHHHhhc-CCChHHHHHHHHHHHHHHcCCChhhh
Q 016280          228 PRLMLHLAS-SEDPDVREAALRGLLELAREKADGSA  262 (392)
Q Consensus       228 v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~~~~~  262 (392)
                      ++.+...|. ..|..-++.|...++.++..+++...
T Consensus       792 ~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~  827 (888)
T d1qbkb_         792 IRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI  827 (888)
T ss_dssp             HHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH
Confidence            555555554 45667789999999999999886543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00041  Score=64.56  Aligned_cols=181  Identities=9%  Similarity=0.035  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHH-HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH------------
Q 016280           71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAP-LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL------------  136 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~-Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~------------  136 (392)
                      +++.+..+++.|..+++..-. -.... ...+.. +...+.+.+.+++..|+..+.+++.........            
T Consensus       229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  307 (458)
T d1ibrb_         229 DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  307 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHH
Confidence            456667777777777653210 00011 112333 445678889999999999999987543222111            


Q ss_pred             ---------HHHcCCHHHHHHhhCC------CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHH
Q 016280          137 ---------VMEANGLEPLLSNFAS------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQ  201 (392)
Q Consensus       137 ---------vl~~g~l~~Ll~LL~s------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~  201 (392)
                               +++ ..++.+...+..      +.+..+|..|..++..++...+...    ...-++.+...+++++.++|
T Consensus       308 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~----~~~l~~~i~~~l~s~~~~~r  382 (458)
T d1ibrb_         308 HTSKFYAKGALQ-YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----VPHVLPFIKEHIKNPDWRYR  382 (458)
T ss_dssp             CCCCCHHHHHHH-HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH----HHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHH-HHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh----hhHHHHHHHHHhcCCCHHHH
Confidence                     111 123444444331      1233588888888888876554322    12356778888999999999


Q ss_pred             HHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          202 RKALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       202 ~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..|+.+|+.++...... ... .-..+++.++.+++++++.||..|+.+|++++...+
T Consensus       383 ~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         383 DAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999998542211 111 112578999999999999999999999999987654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.0042  Score=62.18  Aligned_cols=155  Identities=17%  Similarity=0.144  Sum_probs=104.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280          102 APLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF  180 (392)
Q Consensus       102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f  180 (392)
                      ..++..|.++++.||..++.+++.++... |..+.    -..++.|++.+.++.+..++..|+.+++.++.........+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45667788899999999999999988531 10000    02467788888776677889999999999987654332221


Q ss_pred             HH--cChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          181 RL--ANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       181 ~~--~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~~~~~~~-~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      ..  ..-+..+...+.+  .+..++..|..++.+++..-..... ......+++.+...+.+++.+++..++.+|..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            11  1122333333333  4589999999999988765333221 11222356777788899999999999999999988


Q ss_pred             CCChh
Q 016280          256 EKADG  260 (392)
Q Consensus       256 ~~~~~  260 (392)
                      ..+..
T Consensus       254 ~~~~~  258 (861)
T d2bpta1         254 KYYTF  258 (861)
T ss_dssp             HHGGG
T ss_pred             HHHHH
Confidence            66543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0048  Score=65.35  Aligned_cols=182  Identities=16%  Similarity=0.153  Sum_probs=121.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280           70 VTPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL  147 (392)
Q Consensus        70 ~~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll  147 (392)
                      .+++-+.+|+..|...+..-..  -.+.. ...++.|+.+|+.++++||..|+.+++.++...+..+   +. ..++.|+
T Consensus        15 ~D~d~R~ma~~dl~~~l~~~~~~~~~~~~-~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~~-~l~~~L~   89 (1207)
T d1u6gc_          15 SDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---VE-TIVDTLC   89 (1207)
T ss_dssp             SSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---HH-HHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---HH-HHHHHHH
Confidence            4667778888888776643211  11111 1247889999999999999999999999998655332   11 2467787


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHhhcCCccc-----HHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280          148 SNFASDPDVTVRTKALGAISSLIRHNKPG-----IEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSV  221 (392)
Q Consensus       148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~-----~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~  221 (392)
                      ..+.++ +..+|..+..+|..++...+..     ....+...-++.+...+.. .+..++..|+..+..++...+.....
T Consensus        90 ~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~  168 (1207)
T d1u6gc_          90 TNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN  168 (1207)
T ss_dssp             HHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred             HHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH
Confidence            776653 5577888888888777654321     1222223334445555444 56889999999999998654432211


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280          222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      . ...+++.++..+.+++..+|..|+.+|..++...+
T Consensus       169 ~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~  204 (1207)
T d1u6gc_         169 F-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG  204 (1207)
T ss_dssp             T-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred             H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCC
Confidence            1 12467778888899999999999999999987665

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.0099  Score=59.31  Aligned_cols=143  Identities=12%  Similarity=0.063  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCChHHHHHcC---ChHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHH
Q 016280           71 TPQDIEDMLDELQEHVESIDMANDLHSIG---GLAPLLGYLK--NSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLE  144 (392)
Q Consensus        71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lG---gl~~Ll~lL~--s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~  144 (392)
                      +...+..++..|..+++.++......-..   .+..++..+.  ..+..+|..|..+++.+....+....... ....++
T Consensus       148 ~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  227 (861)
T d2bpta1         148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ  227 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHH
Confidence            44567789999999998876543221111   1233344333  35689999999999999887654322111 112345


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280          145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~  214 (392)
                      .|...+.. .++.++..++.++..++..++.....+...--...+.....+.+..++..++.++..++..
T Consensus       228 ~l~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         228 VVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            56666554 6889999999999999987765544443333444556667788899999999888887643

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0061  Score=56.25  Aligned_cols=155  Identities=12%  Similarity=0.098  Sum_probs=105.5

Q ss_pred             hHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccH
Q 016280          101 LAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       101 l~~Ll~lL~s--~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      ++.++..+.+  .+..++..+..+++.+++........-.-...++.++..+.+ +.+..+|..|+.++..++.......
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~  208 (458)
T d1ibrb_         129 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  208 (458)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             hHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence            4455566654  567889999999999887543221111112346667777664 4568899999999999987654322


Q ss_pred             H-HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280          178 E-AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR  255 (392)
Q Consensus       178 ~-~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~  255 (392)
                      . .......++.+..++.+++.+++..++..+..++...+..........+...+...+.+.+..++..++..+..++.
T Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         209 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            1 22233466778888889999999999999999987655433222233344555666778889999999988888764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.054  Score=54.06  Aligned_cols=144  Identities=13%  Similarity=0.123  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCChHHHHH-cCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC-CHH
Q 016280           69 GVTPQDIEDMLDELQEHVESIDMANDLHS-IGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEAN-GLE  144 (392)
Q Consensus        69 ~~~~e~~~~aL~~L~~lve~iDnA~d~~~-lGgl~~Ll~lL~s--~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g-~l~  144 (392)
                      ..+..-++.++..|..+++.++....... ...++.++..+.+  ++..+|..|..++.+.....+.......... .++
T Consensus       141 ~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~  220 (876)
T d1qgra_         141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ  220 (876)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            34455677889999999886654221111 1246777777755  4578999999999988876553322111111 234


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280          145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN  213 (392)
Q Consensus       145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~  213 (392)
                      .+...+. +++..++..+..++..++..++.....+........+...+.+.+..++..+...+..++.
T Consensus       221 ~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         221 VVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            4445444 4688999999999999998887666666566667778888888889999888888777764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.041  Score=54.99  Aligned_cols=151  Identities=15%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH--HHHH
Q 016280          105 LGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI--EAFR  181 (392)
Q Consensus       105 l~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~--~~f~  181 (392)
                      ...+.+++...|..++.+++.++... +.....++ ...++.++..+.. +++.||..|+++++.++...+...  ..+ 
T Consensus       372 ~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-  448 (876)
T d1qgra_         372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVY-  448 (876)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTT-
T ss_pred             HHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcC-CccHHHHHHHHHHHHHHHHcchhhhhHHH-
Confidence            34567889999999999999988653 33323222 2357778877664 689999999999999987654321  111 


Q ss_pred             HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH-----------HHHh--cCchHHHHHhhcC---CChHHHHH
Q 016280          182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS-----------VVDK--LGFPRLMLHLASS---EDPDVREA  245 (392)
Q Consensus       182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~-----------~l~~--~G~v~~Lv~LL~~---~d~~v~E~  245 (392)
                      ...-++.+...+. ++.+++.++++++.+++........           .+..  ..+++.+...+..   .+..++..
T Consensus       449 ~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~  527 (876)
T d1qgra_         449 LAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             hhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence            1223455555554 4689999999999999753211100           0000  1234555555543   34568888


Q ss_pred             HHHHHHHHHcCCCh
Q 016280          246 ALRGLLELAREKAD  259 (392)
Q Consensus       246 aL~aL~~L~~~~~~  259 (392)
                      ++.++..+......
T Consensus       528 ~~~~l~~~~~~~~~  541 (876)
T d1qgra_         528 AYESLMEIVKNSAK  541 (876)
T ss_dssp             HHHHHHHHHHTCCS
T ss_pred             HHHHHHHhhhhhhh
Confidence            99999888776653

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.09  E-value=0.0012  Score=59.20  Aligned_cols=107  Identities=15%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHH-----HHhh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHH-----
Q 016280           99 GGLAPLLGYLKNSHANIRAKAGEVVT-----TIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS-----  167 (392)
Q Consensus        99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg-----~iaq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS-----  167 (392)
                      -.+..|+.+++.+++.||+.|+..|+     .+.. .++.++..+...=....|..+ ..|++..||..++.+++     
T Consensus        66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~L-l~D~d~~VR~~aa~~~~~~~L~  144 (233)
T d1lrva_          66 SPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQM-AADRDYLVRAYVVQRIPPGRLF  144 (233)
T ss_dssp             SCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGG-TTCSSHHHHHHHHHHSCGGGGG
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHH-hcCCCHHHHHHHHhccchhHHH
Confidence            34566778888888888888886653     2232 355566555554334445554 34467777777665422     


Q ss_pred             HhhcCCccc-HHHHHHcChHHHHHHhhcCCCHHHHHHHHH
Q 016280          168 SLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALN  206 (392)
Q Consensus       168 ~lvR~~~~~-~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~  206 (392)
                      -++.+..+. .......-|.+.|..++++++..++..++.
T Consensus       145 ~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~  184 (233)
T d1lrva_         145 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS  184 (233)
T ss_dssp             GTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence            112211111 122223334555666666666666666654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.059  Score=52.58  Aligned_cols=164  Identities=18%  Similarity=0.249  Sum_probs=110.0

Q ss_pred             hHHHHHc--CChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHHcCCHHHHHHhhCCC--CCHHHHHH
Q 016280           92 ANDLHSI--GGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEANGLEPLLSNFASD--PDVTVRTK  161 (392)
Q Consensus        92 A~d~~~l--Ggl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp-----~~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr~k  161 (392)
                      +..+.+.  +-++.++.+++ ++...|-+-+..++-+++.+..     .+...++..+++ +++..|...  .|+++.. 
T Consensus       259 ~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~Dedl~e-  336 (477)
T d1ho8a_         259 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQ-  336 (477)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHH-
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCHHHHH-
Confidence            3444433  23667777774 5677777788888888875422     233334455555 556655532  3444322 


Q ss_pred             HHHHHHHh----------------------hcCCcccH-HHHH-------Hc---ChHHHHHHhhc----------CCCH
Q 016280          162 ALGAISSL----------------------IRHNKPGI-EAFR-------LA---NGYAALRDALG----------SESV  198 (392)
Q Consensus       162 Al~ALS~l----------------------vR~~~~~~-~~f~-------~~---gGl~~L~~lL~----------s~d~  198 (392)
                      .+-.|..+                      .+-.|... ..|=       ..   .-+..|+.+|.          +.|+
T Consensus       337 dl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~  416 (477)
T d1ho8a_         337 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK  416 (477)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCc
Confidence            22222222                      22234443 3342       12   23566778885          3478


Q ss_pred             HHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          199 KFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       199 kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      .+..-||+=|..++++.|..+..+.+.|+=..+++|+.++|++|+..||.++..+..++
T Consensus       417 ~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         417 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             ceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999999999887655

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.70  E-value=0.13  Score=47.97  Aligned_cols=154  Identities=20%  Similarity=0.258  Sum_probs=104.6

Q ss_pred             cCCCChHHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCC
Q 016280           87 ESIDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDP  154 (392)
Q Consensus        87 e~iDnA~d~~~lGgl~~Ll~lL~s-----------~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~  154 (392)
                      +.+++-..| ..+|+..|+.+|..           .+..+...+..||..+..+.+-. +.+++. .++..|...+.+ +
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~-~~vl~~~~~i~~l~~~L~s-~  110 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGI-KTMLETEEGILLLVRAMDP-A  110 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHH-HHHHHSSSHHHHHHHTCCT-T
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHH-HHHHcChHHHHHHHHccCC-C
Confidence            345566677 45678888776631           13567888999998888655444 445554 778888888776 5


Q ss_pred             CHHHHHHHHHHHHHhhcCC--cccH----HHH------HHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcc---
Q 016280          155 DVTVRTKALGAISSLIRHN--KPGI----EAF------RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASD---  218 (392)
Q Consensus       155 ~~~vr~kAl~ALS~lvR~~--~~~~----~~f------~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~---  218 (392)
                      ...+|.-|+--|+.+|--.  +.+.    .+|      ...+-+..++..|.+. +..++..++.+|..|+...++.   
T Consensus       111 ~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R  190 (343)
T d2bnxa1         111 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR  190 (343)
T ss_dssp             SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHH
Confidence            7889999999998887321  1122    222      2345677888888764 6899999999999999765543   


Q ss_pred             ---hHHHHhcCchHHHHHhhcCCChHHH
Q 016280          219 ---CSVVDKLGFPRLMLHLASSEDPDVR  243 (392)
Q Consensus       219 ---~~~l~~~G~v~~Lv~LL~~~d~~v~  243 (392)
                         +..+...|+.+.+-.+=...++++.
T Consensus       191 ~~lR~E~~~~Gl~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         191 VHIRSELMRLGLHQVLQELREIENEDMK  218 (343)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHCChHHHHHHHHccCChHHH
Confidence               3467788988776666444554443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.2  Score=46.23  Aligned_cols=163  Identities=16%  Similarity=0.146  Sum_probs=120.4

Q ss_pred             hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH----HHHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHH
Q 016280           92 ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP----RSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAI  166 (392)
Q Consensus        92 A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp----~~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~AL  166 (392)
                      +..|++.+.+..|+..|..=+-+-|..++.+.+++....+    ..-+.+... ..+..|+.-..   ++++...+-..|
T Consensus        62 ~~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mL  138 (330)
T d1upka_          62 AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIML  138 (330)
T ss_dssp             HHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHH
Confidence            5677778889999999999999999999999999875322    222444433 33444444433   334545555556


Q ss_pred             HHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC---chHHHHHhhcCCChHHH
Q 016280          167 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG---FPRLMLHLASSEDPDVR  243 (392)
Q Consensus       167 S~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G---~v~~Lv~LL~~~d~~v~  243 (392)
                      .-++|+ +.....++....+.-+....+.++-.+...|...+..|++.++.....+...+   ++.....||.+++.-.+
T Consensus       139 REcik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         139 RECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            666765 34555666778888888999999999999999999999988776655555553   56677889999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 016280          244 EAALRGLLELAREKA  258 (392)
Q Consensus       244 E~aL~aL~~L~~~~~  258 (392)
                      .+++..|+.|..+..
T Consensus       218 RqSlKLLgelLldr~  232 (330)
T d1upka_         218 RQSLKLLGELLLDRH  232 (330)
T ss_dssp             HHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999876554

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.029  Score=54.84  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=64.2

Q ss_pred             CHHHHHHhhCC---------CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280          142 GLEPLLSNFAS---------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL  212 (392)
Q Consensus       142 ~l~~Ll~LL~s---------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~  212 (392)
                      .+..|+.+|.+         ..|+.+..-|.+=|+.+||++|.+...+...||=..++.+|.++|+.||..|+.++.-|.
T Consensus       393 llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         393 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            37889999852         236778889999999999999999999888999999999999999999999999999887


Q ss_pred             hc
Q 016280          213 NE  214 (392)
Q Consensus       213 ~~  214 (392)
                      .+
T Consensus       473 ~~  474 (477)
T d1ho8a_         473 GY  474 (477)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=1.9  Score=39.56  Aligned_cols=124  Identities=17%  Similarity=0.168  Sum_probs=86.0

Q ss_pred             HHHHHHHHcCCHHHHHHhhC----C------CCCHHHHHHHHHHHHHhhcCCcccHHHH-HHcChHHHHHHhhcCCCHHH
Q 016280          132 RSQQLVMEANGLEPLLSNFA----S------DPDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALGSESVKF  200 (392)
Q Consensus       132 ~~Q~~vl~~g~l~~Ll~LL~----s------~~~~~vr~kAl~ALS~lvR~~~~~~~~f-~~~gGl~~L~~lL~s~d~kl  200 (392)
                      -+|+ | ..+|+..|+.+|.    .      ..+......++.||-++..+ ..+...+ ....++..|+.+|.++..++
T Consensus        38 Wv~~-F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~t  114 (343)
T d2bnxa1          38 WVQT-F-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  114 (343)
T ss_dssp             HHHH-H-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHH-H-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHH
Confidence            3444 3 4556766776653    1      12355777889999988854 4555544 45689999999999999999


Q ss_pred             HHHHHHHHHHHhhcC--CcchHH----------HHhcCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCCC
Q 016280          201 QRKALNLIQYLLNEN--ASDCSV----------VDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       201 ~~kA~~lLs~L~~~~--~~~~~~----------l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.-|..+|+.+|.-.  +.....          ..+.+-...++..++. .+.+++..++..+-.|+...+
T Consensus       115 r~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcc
Confidence            999999999998532  222221          2233556778887764 467899888888888887766

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.85  E-value=1.5  Score=40.14  Aligned_cols=215  Identities=15%  Similarity=0.199  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhhC-CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh
Q 016280           30 EEDRRWFMEAMQSQ-TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYL  108 (392)
Q Consensus        30 ~E~~~~L~~Al~~~-~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL  108 (392)
                      ++-|+||.+|+... +..-++.|++.+          .++.++..+....+-.|.....  -+ ..+     +..+..++
T Consensus        71 ~~~r~~~lDal~~~GT~~a~~~i~~~I----------~~~~ls~~ea~~~l~~l~~~~~--Pt-~~~-----l~~~~~l~  132 (336)
T d1lsha1          71 KDYRRWILDAVPAMATSEALLFLKRTL----------ASEQLTSAEATQIVASTLSNQQ--AT-RES-----LSYARELL  132 (336)
T ss_dssp             HHHHHHHHHHHHHHCSHHHHHHHHHHH----------HTTCSCHHHHHHHHHHHHHTCC--CC-HHH-----HHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHhccCC--CC-HHH-----HHHHHHHH
Confidence            34467777776663 444455555422          3334566666666666654333  22 222     34455666


Q ss_pred             cC----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280          109 KN----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKPGI  177 (392)
Q Consensus       109 ~s----~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~~~~~~  177 (392)
                      .+    .++.++..+.-.+|+++.    +++.|.+.     .++.+...+.   +..+...+..++.||+|+  |++.  
T Consensus       133 ~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~--  203 (336)
T d1lsha1         133 NTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNA--GQPN--  203 (336)
T ss_dssp             TCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGG--
T ss_pred             cCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhcc--CCHh--
Confidence            54    478899999999988774    23333222     2333333322   224667778889999997  3443  


Q ss_pred             HHHHHcChHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHHHHHH
Q 016280          178 EAFRLANGYAALRDALGS-------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVREAALR  248 (392)
Q Consensus       178 ~~f~~~gGl~~L~~lL~s-------~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E~aL~  248 (392)
                             .++.|..++..       .+..+|..|.++++.+....+..        +.+.+..++.  ..+.++|-.|..
T Consensus       204 -------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~  268 (336)
T d1lsha1         204 -------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCI  268 (336)
T ss_dssp             -------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             -------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHHHHHHHH
Confidence                   34556666643       25789999999999887643321        1233444443  456788888776


Q ss_pred             HHHHHHcCCCh----hhhhhh-hhhHHHHHHHHHHHHhhhcCCCh
Q 016280          249 GLLELAREKAD----GSAIKL-AEDNEKLKQLLGERIKGISLMSP  288 (392)
Q Consensus       249 aL~~L~~~~~~----~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~  288 (392)
                      +|..  ++-+.    .+...+ .++..++...+.+.++++..-+.
T Consensus       269 ~lm~--t~P~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         269 VFFE--SKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             HHHH--TCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHh--cCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence            6643  11111    111111 45667777888888888776443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.77  E-value=0.017  Score=51.40  Aligned_cols=126  Identities=16%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             HhhcCCCHHHHHHHHHH------HHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280          106 GYLKNSHANIRAKAGEV------VTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA  179 (392)
Q Consensus       106 ~lL~s~~~~IR~~Aa~v------Lg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~  179 (392)
                      .+|.+++.++|..|+.-      +.-+.-.++.++..+.+.=+...|..+ ..|++..||..+...++            
T Consensus        49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L-~~D~d~~VR~~aa~~l~------------  115 (233)
T d1lrva_          49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSAL-MFDEDREVRITVADRLP------------  115 (233)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGT-TTCSCHHHHHHHHHHSC------------
T ss_pred             HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHH-hcCCChhHHHHHHhccC------------
Confidence            48899999999988862      232333467777766654233334444 45567777777665442            


Q ss_pred             HHHcChHHHHHHhhcCCCHHHHHHHHHH-----HHHHhhc-CCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280          180 FRLANGYAALRDALGSESVKFQRKALNL-----IQYLLNE-NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL  250 (392)
Q Consensus       180 f~~~gGl~~L~~lL~s~d~kl~~kA~~l-----Ls~L~~~-~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL  250 (392)
                            ...|..++.+++..||..++..     |..|+.+ ++.-+..+...-..+.|..++++++..||..++..|
T Consensus       116 ------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             ------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             ------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                  2345555666666666655542     1111111 011112222222245566666777777777766543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=4.3  Score=36.93  Aligned_cols=182  Identities=15%  Similarity=0.226  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC---hHHH
Q 016280          112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN---GYAA  188 (392)
Q Consensus       112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g---Gl~~  188 (392)
                      ++++--.+-.+|..|+.+.. .-..|+....+..+.+.+.. ++-++..-|...+..+...|+.....|+..+   =+..
T Consensus       127 ~~eiAl~~G~mLREcik~e~-lak~iL~s~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~  204 (330)
T d1upka_         127 SPEIALNCGIMLRECIRHEP-LAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSE  204 (330)
T ss_dssp             STTTHHHHHHHHHHHHTSHH-HHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred             CcchhhhhhHHHHHHHhhHH-HHHHHHccHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHH
Confidence            45566667777888887644 55668888888888887665 5788999999999998777776666776554   2445


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH----HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhh
Q 016280          189 LRDALGSESVKFQRKALNLIQYLLNENASDCSVV----DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSA  262 (392)
Q Consensus       189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l----~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~  262 (392)
                      ...+|.|++--.|+.++-+|..|+.+ +.+...+    .+..-+..++.||++....+|-.|-.+.--.+.+..  +.+.
T Consensus       205 ~~~LL~s~NYVtrRqSlKLLgelLld-r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~  283 (330)
T d1upka_         205 YEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPIL  283 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHH
Confidence            66889999999999999999999964 4554433    233568899999999999999999988877766544  3333


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhcCCCh-hhHHHHHHHHHHHH
Q 016280          263 IKLAEDNEKLKQLLGERIKGISLMSP-EDLGAAREERHLVD  302 (392)
Q Consensus       263 ~~~~~~~~~L~~~L~~~~~~i~~~~~-ed~~~~~ee~~~~~  302 (392)
                      ..+..--.+|...|.    ... .+. +| +.+.+|++++-
T Consensus       284 ~IL~~Nr~kLl~fl~----~f~-~d~~~D-eqF~~EK~~lI  318 (330)
T d1upka_         284 DILLKNQAKLIEFLS----KFQ-NDRTED-EQFNDEKTYLV  318 (330)
T ss_dssp             HHHHHTHHHHHHHHH----HTT-TTC-CC-SHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHH----hCC-CCCCch-hhHHHHHHHHH
Confidence            222222233333333    322 122 33 66888887743

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.66  E-value=1.8  Score=43.42  Aligned_cols=138  Identities=11%  Similarity=0.025  Sum_probs=97.8

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCc----
Q 016280          101 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNK----  174 (392)
Q Consensus       101 l~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~----  174 (392)
                      ++.+..+| .+.+++.|..|-.-|-.+- ++|         |.+..|+.++.+. .+..+|..|+-.+-+.++.+-    
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            45667776 4578888999998887764 445         4455677766543 467899999989988886431    


Q ss_pred             ------ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhcCCChHHHHHHH
Q 016280          175 ------PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSEDPDVREAAL  247 (392)
Q Consensus       175 ------~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~-~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL  247 (392)
                            +..+..+..    .|..+|.+.+..+|...+.+++.++..+ |..=     -++++.|++++++++...+..++
T Consensus        74 ~~~~i~~e~k~~Ik~----~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~~~~~~~~~L  144 (959)
T d1wa5c_          74 GNHLLPANNVELIKK----EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVL  144 (959)
T ss_dssp             SCBSSCHHHHHHHHH----HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHH
T ss_pred             ccCCCCHHHHHHHHH----HHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhCCCCHHHHHHHH
Confidence                  112333333    3445555678899999999999998642 2211     26788899999999999999999


Q ss_pred             HHHHHHHcCC
Q 016280          248 RGLLELAREK  257 (392)
Q Consensus       248 ~aL~~L~~~~  257 (392)
                      .+|..+++..
T Consensus       145 ~~l~~i~k~~  154 (959)
T d1wa5c_         145 TVAHSIFKRW  154 (959)
T ss_dssp             HHHHHHHGGG
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=91.19  E-value=3.4  Score=37.58  Aligned_cols=195  Identities=9%  Similarity=0.073  Sum_probs=112.6

Q ss_pred             CCCCHHH-HHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHH----HHhhcCCC-ChHHHHHcC
Q 016280           26 RNLSEED-RRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDEL----QEHVESID-MANDLHSIG   99 (392)
Q Consensus        26 ~~~s~E~-~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L----~~lve~iD-nA~d~~~lG   99 (392)
                      +.+++++ -+||..+.....++. +.|+.+..+++.+...     ..+.-+..++=.+    ..+|.+.+ +.+.+    
T Consensus       100 ~~ls~~ea~~~l~~l~~~~~Pt~-~~l~~~~~l~~~~~~~-----~~~~l~~~a~La~gslv~~~c~~~~~~~~~~----  169 (336)
T d1lsha1         100 EQLTSAEATQIVASTLSNQQATR-ESLSYARELLNTSFIR-----NRPILRKTAVLGYGSLVFRYCANTVSCPDEL----  169 (336)
T ss_dssp             TCSCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTCHHHH-----TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGG----
T ss_pred             CCCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHcCcccc-----cchhHHHHHHHHHHHHHHHHhcCCCCCcHHH----
Confidence            4455443 456654433334553 6677777777654321     0122222222222    23333332 22332    


Q ss_pred             ChHHHHH----hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC------CCCHHHHHHHHHHHHHh
Q 016280          100 GLAPLLG----YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS------DPDVTVRTKALGAISSL  169 (392)
Q Consensus       100 gl~~Ll~----lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s------~~~~~vr~kAl~ALS~l  169 (392)
                       +..+..    .+...+.+-+..+..+|||+-  .|.+         ++.|...+..      ..+..+|..|++|+..+
T Consensus       170 -~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p~~---------i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~  237 (336)
T d1lsha1         170 -LQPLHDLLSQSSDRAKEEEIVLALKALGNAG--QPNS---------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI  237 (336)
T ss_dssp             -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CGGG---------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG
T ss_pred             -HHHHHHHHHHhhcccchHHHHHHHHHHhccC--CHhH---------HHHHHHHhcccccccccccHHHHHHHHHHHHHh
Confidence             334433    345667777778899999985  3433         4556555532      23578999999999998


Q ss_pred             hcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChHHHHHH
Q 016280          170 IRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAA  246 (392)
Q Consensus       170 vR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~a  246 (392)
                      ..+++..        ..+.+..++..  .+..+|..|..+|-   ..+|..       ..+..+...+. .++.+|.-.+
T Consensus       238 ~~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm---~t~P~~-------~~l~~i~~~l~~E~~~QV~sfv  299 (336)
T d1lsha1         238 AKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPSV-------ALVSMVAVRLRREPNLQVASFV  299 (336)
T ss_dssp             GGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCCH-------HHHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhcCcHH--------HHHHHHHHHcCCCCChHHHHHHHHHHH---hcCCCH-------HHHHHHHHHHHhCcHHHHHHHH
Confidence            8766422        22334455443  56888887776552   233432       23556666665 5678899999


Q ss_pred             HHHHHHHHcCCChh
Q 016280          247 LRGLLELAREKADG  260 (392)
Q Consensus       247 L~aL~~L~~~~~~~  260 (392)
                      .+.|.+++....+.
T Consensus       300 ~S~l~~la~s~~P~  313 (336)
T d1lsha1         300 YSQMRSLSRSSNPE  313 (336)
T ss_dssp             HHHHHHHTTCCSGG
T ss_pred             HHHHHHHHhCCCcc
Confidence            99999999877643

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.17  Score=41.22  Aligned_cols=74  Identities=16%  Similarity=0.055  Sum_probs=62.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..|..=|.+.++.+...|..+|-.|+.|. +.++..|.....+..|+.++..     .++..|+.+++..|-.-..+++
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            455666788999999999999999999995 9999989888899999988762     3577899999998887766664

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.37  Score=39.07  Aligned_cols=111  Identities=16%  Similarity=0.095  Sum_probs=80.9

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSV  221 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~-~~~~~~  221 (392)
                      +..||.-..++...+.-..+.-.|+-+++..+.+.     ..++..|.+=+++.++.++..|+.+|-.++.+. +.....
T Consensus         2 le~liekAT~~~~~~~dw~~il~icD~I~~~~~~~-----k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~e   76 (143)
T d1mhqa_           2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGP-----THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSE   76 (143)
T ss_dssp             HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            34555554444333334567777888887655322     236667888889999999999999999999764 444566


Q ss_pred             HHhcCchHHHHHhhc------CCChHHHHHHHHHHHHHHcCCC
Q 016280          222 VDKLGFPRLMLHLAS------SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~------~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      +.+..++..|+.++.      ..+..|+++++..|...+...+
T Consensus        77 vask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          77 VAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             HTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            777789999999986      3577899999999998887664

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.63  Score=37.68  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=84.2

Q ss_pred             CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-Ccch
Q 016280          141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDC  219 (392)
Q Consensus       141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~-~~~~  219 (392)
                      ..+..+|.-..++...+.-..+.-.|+-+++..+....     .++..|.+=|.+.++.++..|+.+|-.++.+. +...
T Consensus         7 ~~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k-----~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~   81 (145)
T d1ujka_           7 ETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH   81 (145)
T ss_dssp             TSHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34555666555543333446778888889987654322     36777888899999999999999999999764 4455


Q ss_pred             HHHHhcCchHHHHHhhc------CCChHHHHHHHHHHHHHHcCCC
Q 016280          220 SVVDKLGFPRLMLHLAS------SEDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       220 ~~l~~~G~v~~Lv~LL~------~~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      ..+.+.+++..|+.++.      ..+..|+++++..|..-+...+
T Consensus        82 ~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          82 DEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            67778899999999986      3577899999999988777664

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.43  E-value=0.58  Score=37.81  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN  173 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~  173 (392)
                      +..|.+-|++.++.++..|..+|-.|+.|. +.++..|.....+..|+.++.+.++..|+.+++..|-.-...+
T Consensus        44 ~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            555677889999999999999999999996 6778878777888888888877778899999988877765544

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.39  Score=38.90  Aligned_cols=74  Identities=11%  Similarity=-0.008  Sum_probs=61.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..|..-|++.++.++.+|..++-.|+.|. +.++..|.....+..|+.++..     .++..|+.+++..|-+....++
T Consensus        40 ~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            444666678999999999999999999996 8999988888889999998763     3578899999988887776654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.57  E-value=0.5  Score=38.24  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=79.3

Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHH
Q 016280          144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVV  222 (392)
Q Consensus       144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l  222 (392)
                      ..+|.-..++...+.-..++-.|+-+++..+.+..     .++..|.+-|+++++.++..|+.+|-.++.+... ....+
T Consensus         7 ~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i   81 (145)
T d1dvpa1           7 CKNLENATSHLRLEPDWPSILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEV   81 (145)
T ss_dssp             HHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            34454444433333446677888888887665433     3677788889999999999999999999876433 34556


Q ss_pred             HhcCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCCC
Q 016280          223 DKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA  258 (392)
Q Consensus       223 ~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~  258 (392)
                      .+.+++..|+.++.+ .+..|+++++..|...+....
T Consensus        82 ~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          82 FTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             SSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            666888888888764 577899999999988777553

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=0.9  Score=36.97  Aligned_cols=74  Identities=16%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCCc
Q 016280          101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHNK  174 (392)
Q Consensus       101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~~  174 (392)
                      +..|..-|.+.++.++.+|..+|-.|++|. +.++..|.....+..|+.++..     ..+..|+.+++..|-+-...++
T Consensus        41 ~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~  120 (151)
T d1juqa_          41 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP  120 (151)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence            455666778999999999999999999996 7888888888888888888763     2467899999998888776654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.31  E-value=1.5  Score=35.60  Aligned_cols=110  Identities=14%  Similarity=0.098  Sum_probs=75.8

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-CcchHH
Q 016280          143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASDCSV  221 (392)
Q Consensus       143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~-~~~~~~  221 (392)
                      +..+|.-..++...+.-..+...|+-+++..+.+.     ..++..|.+=|.+.++.++..|+.+|-.++.+. +.....
T Consensus         3 le~~i~kAT~~~l~~~dw~~ileicD~In~~~~~~-----k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~e   77 (151)
T d1juqa_           3 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGP-----QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE   77 (151)
T ss_dssp             HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            34445444433222223456667888887654322     246677888889999999999999999999764 333456


Q ss_pred             HHhcCchHHHHHhhcC------CChHHHHHHHHHHHHHHcCC
Q 016280          222 VDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK  257 (392)
Q Consensus       222 l~~~G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~~  257 (392)
                      +.+..++..|+.++..      .+..|+++++..|..-+...
T Consensus        78 vask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          78 VGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            6677888889988863      36679999998888766654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.25  E-value=2.5  Score=42.23  Aligned_cols=175  Identities=11%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH------------HHHHHHHcCCH
Q 016280           76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR------------SQQLVMEANGL  143 (392)
Q Consensus        76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~------------~Q~~vl~~g~l  143 (392)
                      .+++..+..+++.+. ...+  ...++.++.+|.+++..||..|++++..++.....            .+..+ . ..+
T Consensus       476 ~~~~~~i~~~~~~~~-~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l-~-~ll  550 (959)
T d1wa5c_         476 VDAIKYIYTFRNQLT-KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST-E-ILL  550 (959)
T ss_dssp             HHHHHHHHHTGGGSC-HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH-H-HHH
T ss_pred             HHHHHHHHHHHhhcc-HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH-H-HHH
Confidence            344555555544332 1222  23477788899999999999999999999853211            11100 0 123


Q ss_pred             HHHHHhhCCC-CCHH---HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh----cC-CCHHHHHHHHHHHHHHhhc
Q 016280          144 EPLLSNFASD-PDVT---VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL----GS-ESVKFQRKALNLIQYLLNE  214 (392)
Q Consensus       144 ~~Ll~LL~s~-~~~~---vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL----~s-~d~kl~~kA~~lLs~L~~~  214 (392)
                      ..|+..+... ....   +...++.+|+.++.........+. ..-++.|..++    +. .+......+...|+.++..
T Consensus       551 ~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~  629 (959)
T d1wa5c_         551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY  629 (959)
T ss_dssp             HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            4455544322 1211   123466777776544332221111 11223333332    22 3467777777778888754


Q ss_pred             C-CcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280          215 N-ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK  257 (392)
Q Consensus       215 ~-~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~  257 (392)
                      . ++.... ....+++.+...+.....++.+.++..+..+....
T Consensus       630 ~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         630 TQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             SCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             cCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            3 222222 23345677777777777778888888777765443