Citrus Sinensis ID: 016297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY
cccHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHccHHHHHccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccEEEEEccccEEEEccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEcccccccccccccEEEEcccccccccccccccccEEEcccccccccccccccEEccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccc
cccHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccEHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEEEEccccccccccEEEEEccccccEEEEEcccccEEEEccccccccccEEEEEEEEEEcccccccEEEEEEccccccccccccEEEcccccHccccccccccccEEEEcccEccHHHHHHHHccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcc
mdgvdqlaperkkaqfdvdemkivwagsrhaFQVSDRIARLvasdpafrkdNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLrssvdepaftdlhwgmfvpaikgqgtdeqhqkwLPLAYKMEIIGCYAqtelghgsnvqglettatfdpqtdefvihsptltsskwwpgglgkvsTHAVVYARLItdgqdhgvnGFIVQLrsledhsplpgitigdigmkfgngayntmdngvlrfehvriprnqMLMRVSQVTregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRqfgsknggpetqVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRlqandfstlpeaHACTAGLKsltttatavcy
mdgvdqlaperkkaqfdvdeMKIVWAGsrhafqvsDRIARLvasdpafrkdnramlsrkelfkntlRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTltsskwwpgglGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVtregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVrrqfgsknggpetQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACtaglksltttatavcy
MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY
****************DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS***********DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATA***
**GVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAV**************VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTD**************EAHACTAGLKSLTTTATAVCY
**************QFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY
*DGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
O65202 664 Peroxisomal acyl-coenzyme yes no 0.992 0.585 0.832 0.0
Q9ZQP2 664 Putative peroxisomal acyl no no 0.992 0.585 0.804 0.0
P07872 661 Peroxisomal acyl-coenzyme yes no 0.966 0.573 0.457 1e-96
Q9Z1N0 661 Peroxisomal acyl-coenzyme yes no 0.954 0.565 0.471 1e-96
Q5RC19 660 Peroxisomal acyl-coenzyme yes no 0.948 0.563 0.453 9e-96
Q9R0H0 661 Peroxisomal acyl-coenzyme yes no 0.966 0.573 0.452 1e-95
Q3SZP5 660 Peroxisomal acyl-coenzyme yes no 0.969 0.575 0.455 2e-95
Q15067 660 Peroxisomal acyl-coenzyme yes no 0.948 0.563 0.453 3e-95
Q8HYL8 661 Peroxisomal acyl-coenzyme N/A no 0.956 0.567 0.442 6e-94
Q7KML2 669 Probable peroxisomal acyl yes no 0.961 0.563 0.421 7e-83
>sp|O65202|ACOX1_ARATH Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/389 (83%), Positives = 362/389 (93%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct: 1   MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct: 61  LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWL LA KM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIH+PT T+SKWWPGGLG
Sbjct: 121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct: 181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
            L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct: 301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
           RL A+DF+TLPEAHACTAGLKSLTTTATA
Sbjct: 361 RLAASDFATLPEAHACTAGLKSLTTTATA 389
Catalyzes the desaturation of both long- and medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Most active with C14-CoA. Activity on long-chain mono-unsaturated substrates is 40% higher than with the corresponding saturated substrates. Seems to be an important factor in the general metabolism of root tips. May be involved in the biosynthesis of jasmonic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q9ZQP2|ACO12_ARATH Putative peroxisomal acyl-coenzyme A oxidase 1.2 OS=Arabidopsis thaliana GN=ACX1.2 PE=2 SV=1 Back     alignment and function description
>sp|P07872|ACOX1_RAT Peroxisomal acyl-coenzyme A oxidase 1 OS=Rattus norvegicus GN=Acox1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1N0|ACOX1_CAVPO Peroxisomal acyl-coenzyme A oxidase 1 OS=Cavia porcellus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RC19|ACOX1_PONAB Peroxisomal acyl-coenzyme A oxidase 1 OS=Pongo abelii GN=ACOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q9R0H0|ACOX1_MOUSE Peroxisomal acyl-coenzyme A oxidase 1 OS=Mus musculus GN=Acox1 PE=1 SV=5 Back     alignment and function description
>sp|Q3SZP5|ACOX1_BOVIN Peroxisomal acyl-coenzyme A oxidase 1 OS=Bos taurus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1 PE=1 SV=3 Back     alignment and function description
>sp|Q8HYL8|ACOX1_PHACI Peroxisomal acyl-coenzyme A oxidase 1 OS=Phascolarctos cinereus GN=ACOX1 PE=1 SV=2 Back     alignment and function description
>sp|Q7KML2|ACOX1_DROME Probable peroxisomal acyl-coenzyme A oxidase 1 OS=Drosophila melanogaster GN=CG5009 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
357482107 664 Peroxisomal acyl-CoA oxidase 1A [Medicag 0.992 0.585 0.892 0.0
109157676 683 Chain A, X-Ray Crystal Structure Of Leac 0.992 0.569 0.886 0.0
350535511 664 peroxisomal acyl-CoA oxidase 1A [Solanum 0.992 0.585 0.886 0.0
58531952 664 peroxisomal acyl-CoA oxidase 1A [Solanum 0.992 0.585 0.884 0.0
321438027 664 ACX [Gossypium hirsutum] 0.992 0.585 0.876 0.0
255568739 664 acyl-CoA oxidase, putative [Ricinus comm 0.992 0.585 0.899 0.0
351725645 665 acyl-CoA oxidase [Glycine max] gi|155534 0.992 0.584 0.889 0.0
224138652 664 predicted protein [Populus trichocarpa] 0.992 0.585 0.884 0.0
147866564 664 hypothetical protein VITISV_000871 [Viti 0.992 0.585 0.881 0.0
357476797 664 Peroxisomal acyl-CoA oxidase 1A [Medicag 0.992 0.585 0.879 0.0
>gi|357482107|ref|XP_003611339.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] gi|355512674|gb|AES94297.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] Back     alignment and taxonomy information
 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/389 (89%), Positives = 369/389 (94%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+GVD LA ER KA+FDV+EMKIVWAGSR  F++SDRI+RLVASDPAFRKDNR  L RKE
Sbjct: 1   MEGVDHLAFERNKAEFDVNEMKIVWAGSRQEFELSDRISRLVASDPAFRKDNRTSLDRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFKNTLRK AYAWKRIIELRL+E+EAS LRS VDEPAFTDLHWGMFVPAIKGQGTDEQ +
Sbjct: 61  LFKNTLRKTAYAWKRIIELRLNEQEASKLRSFVDEPAFTDLHWGMFVPAIKGQGTDEQQE 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEF+IHSPTLTSSKWWPGGLG
Sbjct: 121 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFIIHSPTLTSSKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           K+STHA+VYARLIT+GQD GV+GFIVQLRSL+DH PLPGIT+GDIGMKFGN AYNTMDNG
Sbjct: 181 KISTHAIVYARLITEGQDQGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNAAYNTMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
           VLRF+HVRIPRNQMLMRVSQVTREGKYVQSNVPRQL+YGTMVYVRQ IVADAS ALSRAV
Sbjct: 241 VLRFDHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLIYGTMVYVRQAIVADASTALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFGS+ GGPETQVIDYKTQQ RLFPLLASAYAFRFV EWLKWLYTDVTQ
Sbjct: 301 CIATRYSAVRRQFGSQKGGPETQVIDYKTQQARLFPLLASAYAFRFVSEWLKWLYTDVTQ 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
           RLQANDFSTLPEAHACTAGLKSLTT+ATA
Sbjct: 361 RLQANDFSTLPEAHACTAGLKSLTTSATA 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|109157676|pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157677|pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157678|pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Back     alignment and taxonomy information
>gi|350535511|ref|NP_001234198.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] gi|58531948|gb|AAW78689.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|58531952|gb|AAW78691.1| peroxisomal acyl-CoA oxidase 1A [Solanum cheesmaniae] Back     alignment and taxonomy information
>gi|321438027|gb|ADW84019.1| ACX [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255568739|ref|XP_002525341.1| acyl-CoA oxidase, putative [Ricinus communis] gi|223535400|gb|EEF37074.1| acyl-CoA oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351725645|ref|NP_001235564.1| acyl-CoA oxidase [Glycine max] gi|15553480|gb|AAL01888.1|AF404404_1 acyl-CoA oxidase [Glycine max] Back     alignment and taxonomy information
>gi|224138652|ref|XP_002326656.1| predicted protein [Populus trichocarpa] gi|222833978|gb|EEE72455.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147866564|emb|CAN79431.1| hypothetical protein VITISV_000871 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357476797|ref|XP_003608684.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] gi|355509739|gb|AES90881.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2129121 664 ACX1 "acyl-CoA oxidase 1" [Ara 0.992 0.585 0.832 1.2e-177
TAIR|locus:2058779 664 ACX5 "acyl-CoA oxidase 5" [Ara 0.992 0.585 0.804 1.3e-173
UNIPROTKB|F1NY37 662 ACOX1 "Acyl-coenzyme A oxidase 0.966 0.572 0.478 3.6e-89
UNIPROTKB|F1P668 661 ACOX1 "Acyl-coenzyme A oxidase 0.964 0.571 0.467 5.9e-89
RGD|619757 661 Acox1 "acyl-CoA oxidase 1, pal 0.966 0.573 0.457 1.6e-88
UNIPROTKB|P07872 661 Acox1 "Peroxisomal acyl-coenzy 0.966 0.573 0.457 1.6e-88
UNIPROTKB|E2RAF6 661 ACOX1 "Acyl-coenzyme A oxidase 0.964 0.571 0.462 2e-88
UNIPROTKB|Q9Z1N0 661 ACOX1 "Peroxisomal acyl-coenzy 0.961 0.570 0.470 2e-88
MGI|MGI:1330812 661 Acox1 "acyl-Coenzyme A oxidase 0.966 0.573 0.452 8.6e-88
UNIPROTKB|Q5RC19 660 ACOX1 "Peroxisomal acyl-coenzy 0.956 0.568 0.452 2.3e-87
TAIR|locus:2129121 ACX1 "acyl-CoA oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 324/389 (83%), Positives = 362/389 (93%)

Query:     1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
             M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct:     1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60

Query:    61 LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
             LFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct:    61 LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120

Query:   121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
             KWL LA KM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIH+PT T+SKWWPGGLG
Sbjct:   121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWWPGGLG 180

Query:   181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
             KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct:   181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240

Query:   241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
              L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct:   241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300

Query:   301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
             CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct:   301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360

Query:   361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
             RL A+DF+TLPEAHACTAGLKSLTTTATA
Sbjct:   361 RLAASDFATLPEAHACTAGLKSLTTTATA 389
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IEA;ISS;IMP;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=IEA;IDA;NAS
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IMP
GO:0005777 "peroxisome" evidence=ISS;IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0002213 "defense response to insect" evidence=IGI;RCA
GO:0009555 "pollen development" evidence=IGI
GO:0009620 "response to fungus" evidence=IEP;RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006633 "fatty acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2058779 ACX5 "acyl-CoA oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY37 ACOX1 "Acyl-coenzyme A oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P668 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|619757 Acox1 "acyl-CoA oxidase 1, palmitoyl" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P07872 Acox1 "Peroxisomal acyl-coenzyme A oxidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAF6 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z1N0 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
MGI|MGI:1330812 Acox1 "acyl-Coenzyme A oxidase 1, palmitoyl" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC19 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65202ACOX1_ARATH1, ., 3, ., 3, ., 60.83290.99230.5858yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3LOW CONFIDENCE prediction!
3rd Layer1.3.3.60.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_290034
acyl-CoA oxidase (EC-1.3.3.6) (664 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_I000162
SubName- Full=Putative uncharacterized protein; (460 aa)
   • •• 0.912
estExt_fgenesh4_pg.C_LG_II1951
acetyl-CoA C-acyltransferase (EC-2.3.1.16) (457 aa)
   • •• 0.912
estExt_Genewise1_v1.C_LG_X3923
hypothetical protein (726 aa)
     •• 0.908
estExt_fgenesh4_pg.C_LG_XVIII0682
SubName- Full=Putative uncharacterized protein; (727 aa)
     •• 0.905
eugene3.00130195
long-chain acyl-CoA synthetase (EC-6.2.1.3) (696 aa)
     •• 0.904
gw1.X.5990.1
long-chain acyl-CoA synthetase (EC-6.2.1.3) (705 aa)
     •• 0.904
estExt_fgenesh4_pm.C_LG_XIV0485
long-chain-fatty-acid-CoA ligase family protein (EC-6.2.1.3) (679 aa)
     •  0.903
estExt_fgenesh4_pg.C_LG_III1161
hypothetical protein (662 aa)
     •  0.902
estExt_Genewise1_v1.C_LG_I8598
hypothetical protein (662 aa)
     •  0.902
grail3.0003071602
long-chain-fatty-acid-CoA ligase family protein (EC-6.2.1.3) (641 aa)
     •  0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 0.0
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 1e-154
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 1e-104
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 1e-68
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 6e-63
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 2e-37
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 6e-17
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 3e-16
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 5e-16
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 5e-13
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 2e-11
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 7e-11
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 9e-11
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 2e-09
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 1e-08
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 1e-08
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 1e-07
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 2e-05
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 3e-04
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score =  844 bits (2183), Expect = 0.0
 Identities = 346/389 (88%), Positives = 374/389 (96%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+GVD LA ER KAQFDVD MKIVWAGSRHAF+VSDR+ARLVASDP F KDNR  LSRKE
Sbjct: 1   MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFKNTLRKAA+AWKRIIELRL+EEEA  LRS VDEP +TDLHWGMFVPAIKGQGT+EQ +
Sbjct: 61  LFKNTLRKAAHAWKRIIELRLTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQK 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIHSPTLTSSKWWPGGLG
Sbjct: 121 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLIT+G+DHG++GFIVQLRSL+DHSPLPG+T+GDIGMKFGNGAYNTMDNG
Sbjct: 181 KVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
            LRF+HVRIPR+QMLMR+S+VTREGKYVQS+VPRQL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFGS++GGPETQVIDYKTQQ+RLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 301 CIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
           RL+ANDFSTLPEAHACTAGLKSLTT+ATA
Sbjct: 361 RLEANDFSTLPEAHACTAGLKSLTTSATA 389

Length = 664
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
PLN02443 664 acyl-coenzyme A oxidase 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PLN02312 680 acyl-CoA oxidase 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PRK11561 538 isovaleryl CoA dehydrogenase; Provisional 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.84
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.47
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 99.33
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.27
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 98.93
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 98.69
COG2368 493 Aromatic ring hydroxylase [Secondary metabolites b 98.45
TIGR02310 519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 98.3
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 97.64
PTZ00457520 acyl-CoA dehydrogenase; Provisional 85.65
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-62  Score=503.31  Aligned_cols=392  Identities=88%  Similarity=1.368  Sum_probs=341.6

Q ss_pred             CCCccchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 016297            1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR   80 (392)
Q Consensus         1 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG   80 (392)
                      |.+++||+.||++++||+++|+.+|+|+++..+.+..+++++.++|+|...+....++++.++........+.+.+.++|
T Consensus         1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~   80 (664)
T PLN02443          1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR   80 (664)
T ss_pred             CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999989999999999999999987655568899999888888788888888999


Q ss_pred             CCHHHHHHHhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCC
Q 016297           81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD  160 (392)
Q Consensus        81 ~~e~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~  160 (392)
                      |..+.......+++.+.++.+|+.+++++|..+||++|+++|||++.+|++++|||+|||+||||+.+++|+|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~  160 (664)
T PLN02443         81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD  160 (664)
T ss_pred             CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence            97654444444556666778888899999999999999999999999999999999999999999999999999998788


Q ss_pred             eEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCce
Q 016297          161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG  240 (392)
Q Consensus       161 ~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~  240 (392)
                      +|+||||+++|+|+|+++++..|++++|+|++..+++++|+++||||+|+.+++...|||++++.++|+|.+++++.+++
T Consensus       161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng  240 (664)
T PLN02443        161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG  240 (664)
T ss_pred             EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence            99999999999999999844789999999998766667899999999998888888999999999999993323458899


Q ss_pred             eEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC
Q 016297          241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP  320 (392)
Q Consensus       241 ~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~  320 (392)
                      .|.|+||+||++++|++.+.++++|.++.......+....+..+|+.+++.++|++++|++++++|+++|+|||++++.+
T Consensus       241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~  320 (664)
T PLN02443        241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP  320 (664)
T ss_pred             EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence            99999999999999998887777888876444333667888999999999999999999999999999999999977766


Q ss_pred             CccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297          321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY  392 (392)
Q Consensus       321 ~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i  392 (392)
                      |.++.+||.+|++|+++++.+++++++.+++++.+++....+..++....++.+..++++|+++++.+.+++
T Consensus       321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i  392 (664)
T PLN02443        321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGI  392 (664)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999988654333322322235678889999999999998764

>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 0.0
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 0.0
1is2_A 661 Crystal Structure Of Peroxisomal Acyl-coa Oxidase-i 7e-99
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 7e-09
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 1e-08
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-08
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 1e-08
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-08
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 3e-08
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 4e-08
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 4e-08
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 5e-08
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 5e-08
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 4e-07
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 6e-06
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 6e-06
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 6e-06
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 6e-06
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 6e-06
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 1e-05
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 4e-05
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 4e-05
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 4e-05
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 4e-05
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 5e-05
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 1e-04
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 1e-04
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 2e-04
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 2e-04
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 3e-04
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure 
Iteration: 1

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/389 (88%), Positives = 372/389 (95%)
Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+GVD LA ERKKA FDVDEMKIVWAGSRH F+++DRI++LVASDP F K+ R ML RKE
Sbjct: 20  MEGVDYLADERKKAGFDVDEMKIVWAGSRHDFELTDRISKLVASDPGFSKEGRTMLPRKE 79
Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFKNTLRKAAYAWKRIIELRLS+EEA+MLR  VDEPAFTDLHWGMF+PAIKGQGTD+Q +
Sbjct: 80  LFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQE 139
Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG
Sbjct: 140 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 199
Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAYN+MDNG
Sbjct: 200 KVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNG 259
Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
           VL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS A+SRAV
Sbjct: 260 VLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAV 319
Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 320 CIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 379
Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
           RL ANDFSTLPEAHACTAGLKSLTT+ATA
Sbjct: 380 RLAANDFSTLPEAHACTAGLKSLTTSATA 408
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From Rat Liver Length = 661 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 0.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 1e-174
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 4e-22
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 5e-22
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 6e-22
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 3e-21
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 6e-21
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 3e-20
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 5e-19
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 7e-19
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-18
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-18
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 1e-18
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 2e-18
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 4e-18
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 2e-17
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 8e-17
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 9e-17
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-16
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 2e-16
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 2e-16
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 2e-15
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 3e-15
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 3e-15
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 3e-15
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 5e-15
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 5e-15
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 5e-15
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 3e-14
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 5e-14
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 4e-11
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 1e-07
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
 Score =  536 bits (1382), Expect = 0.0
 Identities = 323/389 (83%), Positives = 361/389 (92%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct: 1   MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct: 61  LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWWPGGLG
Sbjct: 121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct: 181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
            L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct: 301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
           RL A+DF+TLPEAHACTAGLKSLTTTATA
Sbjct: 361 RLAASDFATLPEAHACTAGLKSLTTTATA 389
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
3djl_A 541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
1u8v_A 490 Gamma-aminobutyrate metabolism dehydratase/isomera 99.97
2yyk_A 481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 99.97
3hwc_A 515 Chlorophenol-4-monooxygenase component 2; beta bar 99.96
4g5e_A 517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.85
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 82.96
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
Probab=100.00  E-value=9.1e-58  Score=473.52  Aligned_cols=384  Identities=46%  Similarity=0.800  Sum_probs=313.4

Q ss_pred             cchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 016297            5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEE   84 (392)
Q Consensus         5 ~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~e~   84 (392)
                      +||++||.+++||+++|..+|+|++++.++|+++++++.++|.|.......+++++.++....+...+.+.+.++|+...
T Consensus         3 ~~l~~er~~~~f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~   82 (661)
T 2ddh_A            3 PDLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDP   82 (661)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHTSHHHHHHHHHHHHHHHTCGGGCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             hHHHHHHhhCCCCHHHHHHHHCCChhHHHHHHHHHHHHhcCcccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            48999999999999999999999999999999999999999887654444567877777766666666666667777532


Q ss_pred             HHHH-HhhhcC--CchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCe
Q 016297           85 EASM-LRSSVD--EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE  161 (392)
Q Consensus        85 ~gg~-~~~~~~--~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~  161 (392)
                      .... ...++.  .+.++.+|+++++.+|..+|+++|+++|||++++|++++|+++|||++|||+.+++|+|++++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~  162 (661)
T 2ddh_A           83 EEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE  162 (661)
T ss_dssp             HHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTE
T ss_pred             hHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCe
Confidence            2111 111222  2466788888999999999999999999999999999999999999999999999999999876789


Q ss_pred             EEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCcee
Q 016297          162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV  241 (392)
Q Consensus       162 ~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~  241 (392)
                      |+||||+++|+|+|++|++..||+++|+|++..++++.|+++|+||+++.+++.+.|||++.+.|+++|   +++++++.
T Consensus       163 ~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~G---l~g~~~~~  239 (661)
T 2ddh_A          163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEMDNGY  239 (661)
T ss_dssp             EEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSS---CTTCCCEE
T ss_pred             EEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCccccc---CCCCcceE
Confidence            999999999999999985679999999999876555578999999988777777899999999999999   99999999


Q ss_pred             EEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCC
Q 016297          242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE  321 (392)
Q Consensus       242 v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~  321 (392)
                      |.|+||+||++++|+..+.+.+.|.+....... ..+..+..+|+.+++.++|+++++++++++|+++|+|||++.+.+|
T Consensus       240 v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e  318 (661)
T 2ddh_A          240 LKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPE  318 (661)
T ss_dssp             EEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCC
T ss_pred             EEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCcc
Confidence            999999999999999765554457664322222 4556777899999999999999999999999999999998767778


Q ss_pred             ccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297          322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY  392 (392)
Q Consensus       322 ~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i  392 (392)
                      .||++||.+|++|+++.+.+++++++++++++.+++.......++....++.+..++++|+++++.+.+++
T Consensus       319 ~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~  389 (661)
T 2ddh_A          319 PQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGI  389 (661)
T ss_dssp             CBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999887432221112222223578889999999999998763
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 8e-95
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 6e-72
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 8e-21
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 4e-20
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 1e-19
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 1e-14
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 2e-14
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 6e-13
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 8e-13
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 1e-12
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 2e-12
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 1e-08
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 3e-07
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 5e-07
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  282 bits (723), Expect = 8e-95
 Identities = 215/271 (79%), Positives = 247/271 (91%)

Query: 2   DGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKEL 61
           +G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKEL
Sbjct: 1   EGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKEL 60

Query: 62  FKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQK 121
           FK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +K
Sbjct: 61  FKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKK 120

Query: 122 WLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181
           WL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWWPGGLGK
Sbjct: 121 WLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGK 180

Query: 182 VSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241
           VSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG 
Sbjct: 181 VSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGF 240

Query: 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNV 272
           L F+HVRIPR+QMLMR+S+VTREG+YV S+V
Sbjct: 241 LMFDHVRIPRDQMLMRLSKVTREGEYVPSDV 271
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.98
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.97
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.79
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.69
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.62
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.61
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.59
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.59
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.53
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.53
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.53
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.49
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.49
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.49
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.45
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.2e-50  Score=370.61  Aligned_cols=269  Identities=80%  Similarity=1.275  Sum_probs=247.9

Q ss_pred             CCccchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 016297            2 DGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL   81 (392)
Q Consensus         2 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~   81 (392)
                      .+++.|++||++++||+++|..||++++|+.++++++++++.++|.|...+...+++++.++.........|+.+.++||
T Consensus         1 ~g~~~L~~eR~~a~Fd~~el~~~l~g~ee~~~~r~~v~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~g~   80 (271)
T d1w07a3           1 EGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIELRL   80 (271)
T ss_dssp             CCCCTTHHHHTTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCTTTTSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999999999999999999999999876666788888888877777788999999999


Q ss_pred             CHHHHHHHhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCe
Q 016297           82 SEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE  161 (392)
Q Consensus        82 ~e~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~  161 (392)
                      .....+....+++.+.++.+|++++.++|..+||++||++|||++++|++++|+|+|||++|||+.+++|+|++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~  160 (271)
T d1w07a3          81 NEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE  160 (271)
T ss_dssp             CHHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTE
T ss_pred             ChhhhHHHHHHhccchHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCce
Confidence            98888888888888888999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             EEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCcee
Q 016297          162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV  241 (392)
Q Consensus       162 ~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~  241 (392)
                      |+||||+..|+|+|++|++..|++++|+|++..+++++|+++|+||+++.++..+.|||++.+..+++|..++++.+++.
T Consensus       161 ~vlng~k~~~~K~wi~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~  240 (271)
T d1w07a3         161 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGF  240 (271)
T ss_dssp             EEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEE
T ss_pred             eeecccccceeeeccCCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEE
Confidence            99999999999999998678899999999998877778999999999988888889999999999999855578899999


Q ss_pred             EEecceecCcccccccccccCCCCeEEec
Q 016297          242 LRFEHVRIPRNQMLMRVSQVTREGKYVQS  270 (392)
Q Consensus       242 v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~  270 (392)
                      |.|+||+||++++||+.+.+.++|.++.+
T Consensus       241 i~Fd~VrVP~~~lLg~~g~v~~~G~~~~s  269 (271)
T d1w07a3         241 LMFDHVRIPRDQMLMRLSKVTREGEYVPS  269 (271)
T ss_dssp             EEESSEEEEGGGBCCSSEEECTTCCEEEC
T ss_pred             EEEeeEEECHHHcCCCCCcCCCCceEecC
Confidence            99999999999999999999999998754
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure