Citrus Sinensis ID: 016298

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MKHRKLFPASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELGENGERNREDCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSSFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHccEEEEEccccccccccccEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHcHcccccccHHHHHHccEEEEEccccccccccEEEEEccccccccEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEEEEcccccccEEEEEHHHccccccccccccccccccccccccccccEEEcccccccccEEEEccccccHHcccccccccEEEcccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
mkhrklfpasesngttscsyycdpncpfnyncvplpgiyyleppppppshqsnstppYVIIFVALVLSFILFLAFYVIKSktgwcnsetneghqqaqsdgededfvdenridhpiwLIHTVGLQQSVINSITVCrykkgegliegtecsvclnefqedetvrllpkcnhafHISCIDTWlsshincpmcrahivhetvtaplattanqnsdssslavdnhtehtgndrelgengernredceNRTETEADRILKdnvnanengalqviddsgddNQALQAQAQTIRRSVSLDSSLAETICLgladfgllesceFSYDQITkdaeksdshsnsaivakqdgaysssfrltrnssivqslhkdsvsmkrsfscsgrflsplcnsnrnpnailpl
Flexible Loop (DISEMBL)
mkhrklfpasesngttSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNeghqqaqsdgeDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTanqnsdssslavdnhtehtgndrelgengernredcenRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDaeksdshsnsAIVAKQDGAYSSSFRLTRNSsivqslhkdsvSMKRSFSCSgrflsplcnsnrnpnailpl
Low Complexity Region (SEG)
MKHRKLFPASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEppppppshqsnstppYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTgndrelgengernredCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSSFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL
Disordered region (IsUnstruct)
****************SCSYYCDPNCPFNYNCVPLPGIYYL***************PYVIIFVALVLSFILFLAFYVIKSKTGWCN********************DENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPL*****************************************************************************************DSSLAETICLGLADFGLLESCEFSYDQI*************************************************************************
Disordered Region (DISOPRED)
***RK***ASESNGTTSCSYYCDPNCPFNYNCV************************YVIIFVALVLSFILFLAFYVIKSKTGWCN***********************************GLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV*****************************************************************************************************************************************************************************************************L
Disordered Region (DISEMBL)
**************TTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCNS****************DFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLAT******************************************TEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQIT************AIVAKQDGAYSSSFRLTRNSSIVQS***********FSCSGRFLSPLCNSNRNPNAILPL
Disordered Region (DISPRO)
******FPASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPP*******NSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCN**************************HPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH**************************************************************************************AQTIRRSVSLDSSLAETICLGLADFGLL*********************************SSSFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLC************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKHRKLFPASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELGENGERNREDCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSSFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q8LFY8	413	RING-H2 finger protein AT	yes	no	0.617	0.585	0.442	3e-53
Q9LX93	301	E3 ubiquitin-protein liga	no	no	0.392	0.511	0.466	1e-28
Q9SRQ8	356	RING-H2 finger protein AT	no	no	0.576	0.634	0.310	8e-28
Q9LF64	362	RING-H2 finger protein AT	no	no	0.579	0.627	0.345	9e-28
P0C041	310	Putative RING-H2 finger p	no	no	0.451	0.570	0.374	3e-25
Q7XLY8	383	E3 ubiquitin-protein liga	no	no	0.357	0.365	0.385	3e-25
Q8GW38	369	RING-H2 finger protein AT	no	no	0.334	0.355	0.387	7e-22
Q9SL78	390	Putative RING-H2 finger p	no	no	0.431	0.433	0.343	3e-21
P93823	381	RING-H2 finger protein AT	no	no	0.625	0.643	0.279	3e-19
Q8W571	323	RING-H2 finger protein AT	no	no	0.336	0.408	0.363	3e-18

>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/278 (44%), Positives = 160/278 (57%), Gaps = 36/278 (12%)

Query: 2   KHRKLFP--ASESNGTTSCS-YYCDPNCPFNYNCVPLPGIYYLEPPPP------------ 46
           KHRKLFP  ASE+N T  CS   CDP CP  YNC P P  Y + P  P            
Sbjct: 5   KHRKLFPTLASETNKTLDCSNGVCDPICP--YNCYPEPDYYTISPQLPPWSSSPQPSPCP 62

Query: 47  ---------PPSHQSNSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQ 97
                    P    S+S     II +   +  IL   F+++        +  N+G  Q+ 
Sbjct: 63  SPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSD 122

Query: 98  SDGED----EDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLN 153
           ++  D    E+F D  ++DHPIWLI T GLQQS+INSIT+C YK+G+GLIE T+C VCLN
Sbjct: 123 NEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLN 182

Query: 154 EFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSS 213
           EF+EDE++RLLPKCNHAFHISCIDTWLSSH NCP+CRA I   +VT P  +   + +   
Sbjct: 183 EFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGG 242

Query: 214 SLAVDNHTEHTGNDRELGENGE-RNREDCENRTETEAD 250
           S    +H E+ G D E  ++GE  NR D + +   ++D
Sbjct: 243 S---GSHLENDGVDEE--DHGEIENRVDSDFKESDDSD 275

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 9/163 (5%)

Query: 57  PYVIIFVALVL---SFILFLAFYVIKSKTGWCNSET--NEGHQQAQSDGEDEDFVDENRI 111
           P  I  V  ++     + FL  ++ + +     S T  +   Q+ + + E+ DF D    
Sbjct: 43  PTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDEDETEERDFSDF--- 99

Query: 112 DHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAF 171
            H +W I TVGL +S INSITV  +KKGEG+I+GTECSVCLNEF+EDE++RLLPKC+HAF
Sbjct: 100 -HHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAF 158

Query: 172 HISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSS 214
           H++CIDTWL SH NCP+CRA ++  T      T  N   DS S
Sbjct: 159 HLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSES 201

E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. May be involved in the early steps of the plant defense signaling pathway. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 126/264 (47%), Gaps = 38/264 (14%)

Query: 18  CSYYCDPNCPFNYNCVPLPGIYYLEPPPPP------PSHQSNSTPPYVIIFVALVLSFIL 71
           CS YC   C            Y + PPPP           S+   P +I  + ++ S  +
Sbjct: 25  CSVYCPQWC------------YVIFPPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFI 72

Query: 72  FLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRID----------HPIWLIHTV 121
            +++Y + SK        +     A  +    D+  +   +            I      
Sbjct: 73  LVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGD 132

Query: 122 GLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS 181
           GL +S+I SITV +Y+K +G +E ++CSVCL+EFQE+E++RLLPKCNHAFH+ CIDTWL 
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 182 SHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELGEN----GERN 237
           SH NCP+CRA IV  +    +  T  Q      +  +N++  TG+D  +  N      R+
Sbjct: 193 SHSNCPLCRAFIVTSSAVEIVDLTNQQ------IVTENNSISTGDDSVVVVNLDLENSRS 246

Query: 238 REDCENRTETEADRILKDNVNANE 261
           R +  N   T     ++D+ +  E
Sbjct: 247 RNETVNEGSTPKPPEMQDSRDGEE 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 125/243 (51%), Gaps = 16/243 (6%)

Query: 60  IIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIH 119
           I  + ++ S ++ +++Y + SK    + +T+       +   +  F    RI       +
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRIS-----TN 113

Query: 120 TVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179
             GL +S+I SITV +YK G+G ++G++CSVCL+EF+E+E++RLLPKCNHAFH+ CIDTW
Sbjct: 114 GDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTW 173

Query: 180 LSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELGEN---GER 236
           L SH NCP+CRA +    V  P A+   QN         N    TG+  E+  N    E 
Sbjct: 174 LKSHSNCPLCRAFVT--GVNNPTASVG-QNVSVVVANQSNSAHQTGSVSEINLNLAGYES 230

Query: 237 NREDCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLA 296
              D ++    E   I   N +A     L        D  +L      IRRSVSL+S + 
Sbjct: 231 QTGDFDSVVVIEDLEIGSRNSDARSELQLPEERRETKDEDSL-----PIRRSVSLNSGVV 285

Query: 297 ETI 299
            +I
Sbjct: 286 VSI 288

Arabidopsis thaliana (taxid: 3702)

>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 106/211 (50%), Gaps = 34/211 (16%)

Query: 40  YLEPPPPPPSHQS----------NSTPPYVIIFVALVLSFILFLAFYVIKSKTGWC-NSE 88
           Y+   PPP S++           N +P  + IF     +F+L  A+Y + SK  +C N  
Sbjct: 34  YINFSPPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLL-AAYYTLVSK--YCANDT 90

Query: 89  TNEGHQQAQSDGEDEDFVDENRI-----DHPIWL-IHTVGLQQSVINSITVCRYKKGEG- 141
           TNE    A   G  +  +D N       D P  L   T GL  ++I  I   + KK +  
Sbjct: 91  TNEA---ASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNG 147

Query: 142 -LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTA 200
             I GT+CS+CL EF EDE++RLLPKCNH FH+ CID WL SH NCP+CRA I+  T   
Sbjct: 148 FKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQ 207

Query: 201 PL---------ATTANQNSDSSSLAVDNHTE 222
           P            T+N  S   ++ VD+H E
Sbjct: 208 PEHHVVVMNLDRFTSNVGSAEGNVVVDDHRE 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 13/153 (8%)

Query: 57  PYVIIFVALVLSFILFLAFYVIKSKTGWCNSETN----------EGHQQAQSDGEDEDFV 106
           P VI  + ++ S  L +++Y   SK  +C + ++           G       G      
Sbjct: 57  PLVIAIIGVLASAFLLVSYYTFISK--YCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHG 114

Query: 107 DENRIDHPIWLIHT-VGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLP 165
                 H  W +    GL +++IN ITVC+Y++G+G +  T+CSVCL EF + E++RLLP
Sbjct: 115 HGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLP 174

Query: 166 KCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198
           +C+HAFH  CIDTWL SH NCP+CRA+I   TV
Sbjct: 175 RCSHAFHQQCIDTWLKSHSNCPLCRANITFVTV 207

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1

 Score =  105 bits (261), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 11/142 (7%)

Query: 59  VIIFVALVLSFILF-------LAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRI 111
           +I+F+ ++LS I F       L  Y +K K    +S  NE +Q  +    D       R 
Sbjct: 52  IILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDT----YQRQ 107

Query: 112 DHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAF 171
              ++ +H  GL Q++I+++ V  YK+ +G  E  +C+VCL EF ED+ +RLLP C+HAF
Sbjct: 108 LQQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAF 167

Query: 172 HISCIDTWLSSHINCPMCRAHI 193
           HI CIDTWL S+  CP+CR  +
Sbjct: 168 HIDCIDTWLLSNSTCPLCRGTL 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 94/195 (48%), Gaps = 26/195 (13%)

Query: 43  PPPPPPSHQSNSTPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGED 102
           PPPP     S+   P + I    V S +  L F ++     +     N+   +  SDGE 
Sbjct: 25  PPPPNLYATSDLFKPSLAIITG-VFSIVFTLTFVLL----VYAKCFHNDLRSETDSDGE- 78

Query: 103 EDFVDENRIDH-PIW--LIHTV----GLQQSVINSITVCRYKKGEGLIEGTECSVCLNEF 155
                  RI H  +W  L +      GL +  I S+   R+   +GL +G ECSVCL++F
Sbjct: 79  -------RIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKF 131

Query: 156 QEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSL 215
           ++ E +RLLPKC HAFHI CID WL  H  CP+CR  +    +   L+   N    S+SL
Sbjct: 132 EDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRV---NIEDDLSVLGNS---STSL 185

Query: 216 AVDNHTEHTGNDREL 230
            + N +E    D  L
Sbjct: 186 RILNQSETREEDSRL 200

Arabidopsis thaliana (taxid: 3702)

>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 137/311 (44%), Gaps = 66/311 (21%)

Query: 46  PPPSHQSNSTPPYVIIFVALVLSFILFLAFY--VIKSKTGWCNSETNEGHQQAQSDGEDE 103
           P  S    + P   I  + ++ +  L +++Y  VIK    W   +     +++       
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSS------ 85

Query: 104 DFVDENRIDHPIWLIHTV--GLQQSVINSITVCRYKKGEGLIEG--------TECSVCLN 153
              D+N +   I+  H V  GL +S I +I V ++KK + ++ G         ECSVCLN
Sbjct: 86  ---DQNPL--MIYSPHEVNRGLDESAIRAIPVFKFKKRD-VVAGEEDQSKNSQECSVCLN 139

Query: 154 EFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR------AHIVHETVTAPLATTAN 207
           EFQEDE +R++P C H FHI CID WL  + NCP+CR      A    + ++AP +   N
Sbjct: 140 EFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPREN 199

Query: 208 QNSDSSSLAVDNHTEHTGNDR----ELGENGERNREDCEN-RTETEADRILKDNVNANE- 261
            +  S +  ++      G+D     ELG +   NRE   N    TE +R+  + V+    
Sbjct: 200 -SPHSRNRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNS 258

Query: 262 ------------NGAL---------------QVIDDSGDDNQALQAQAQTIRRSVSLDSS 294
                       N  +               + ID  G D      + Q IRRS+S+DSS
Sbjct: 259 PKSVSPLPIKFGNRGMYKKERKFHKVTSMGDECIDTRGKDGHF--GEIQPIRRSISMDSS 316

Query: 295 LAETICLGLAD 305
           +   + L + +
Sbjct: 317 VDRQLYLAVQE 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 75/154 (48%), Gaps = 22/154 (14%)

Query: 45  PPPPSHQSNSTPPYVIIFVALVLSFIL--FLAFYVIKSKTGWCNSETNEGHQQAQSDGED 102
           P PP  Q+  TP    +F  LV  F L   L+ Y+        +S T     +A  DG  
Sbjct: 33  PSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRAN-DGSS 91

Query: 103 EDFVDENRIDHPIWLIHTVGLQQSVINSITVCRY---KKGEGLIEGTECSVCLNEFQEDE 159
                              GL  +V+ S  V  Y   K+ +   +  EC++CLNE ++ E
Sbjct: 92  R----------------RGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHE 135

Query: 160 TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
           TVRLLP CNH FHI CIDTWL SH  CP+CR+++
Sbjct: 136 TVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
224063285	389	predicted protein [Populus trichocarpa]	0.954	0.961	0.540	1e-100
255545848	393	ring finger protein, putative [Ricinus c	0.961	0.959	0.5	3e-93
147769273	404	hypothetical protein VITISV_008030 [Viti	0.964	0.935	0.490	2e-85
359492465	404	PREDICTED: RING-H2 finger protein ATL54-	0.964	0.935	0.490	3e-85
356498809	381	PREDICTED: RING-H2 finger protein ATL54-	0.864	0.889	0.415	7e-61
225465766	379	PREDICTED: RING-H2 finger protein ATL54	0.928	0.960	0.401	2e-60
356551725	381	PREDICTED: RING-H2 finger protein ATL54-	0.869	0.895	0.415	1e-58
302142008	318	unnamed protein product [Vitis vinifera]	0.579	0.713	0.528	6e-58
357489801	352	RING-H2 finger protein ATL1O [Medicago t	0.806	0.897	0.394	5e-56
359480496	372	PREDICTED: uncharacterized protein LOC10	0.823	0.868	0.412	3e-55

>gi|224063285|ref|XP_002301077.1| predicted protein [Populus trichocarpa] gi|222842803|gb|EEE80350.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/405 (54%), Positives = 262/405 (64%), Gaps = 31/405 (7%)

Query: 1   MKHRKLFP-ASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSH-QSNSTPPY 58
           MKHRKLFP  +E+N T  C  +CDP CP  YNC P    Y L PPPPPP   Q +   PY
Sbjct: 3   MKHRKLFPIGTETNQTIDCPDFCDPACP--YNCYPYSDYYLLPPPPPPPFLPQEHHLSPY 60

Query: 59  VIIFVALVLSFILFLAFYVI--KSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIW 116
           VII VAL+ SF L +++YVI  KS +GWC S  N    QAQ D  DE+F+DENR+DHPIW
Sbjct: 61  VIIIVALLASFFLIVSYYVIVAKSCSGWCGSRNNT-EPQAQEDDTDEEFLDENRVDHPIW 119

Query: 117 LIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCI 176
            I T+GLQQS+INSITVC+YKKGEGLIEGTECSVCL+EFQ+DET+RLLPKCNHAFHISCI
Sbjct: 120 FITTIGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHISCI 179

Query: 177 DTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELGENGER 236
           DTWL SH NCP+CR HI++   + PL +   QN D+ +       E++  D  LG N E 
Sbjct: 180 DTWLRSHTNCPLCRTHIINGPASTPLISVG-QNHDNLNPTFSTQMENSDVDSGLGNNQES 238

Query: 237 NREDCENRTETE---------ADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRR 287
           N E CENR  TE          +R LKD VN+N+ G LQV+  S D +QA     + +RR
Sbjct: 239 N-EPCENRAGTEEVGEILQVGEERTLKDEVNSNDIGDLQVLCSSVDKHQAEDNDIKLLRR 297

Query: 288 SVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSSFR 347
           S S+DS  A T+C+GL D   L       +QI  D E+      S +V K+DG YSS F+
Sbjct: 298 SSSMDSLRATTMCIGLNDHKNL------VNQIDIDEER-----KSNMVLKRDGGYSSVFK 346

Query: 348 LTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL 392
           LT  SS   SLHK  VSMKRSFSC GRF S   N +  P  ILPL
Sbjct: 347 LTGTSSFSLSLHKGPVSMKRSFSCGGRFFSSRQNPSLKP--ILPL 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545848|ref|XP_002513984.1| ring finger protein, putative [Ricinus communis] gi|223547070|gb|EEF48567.1| ring finger protein, putative [Ricinus communis]

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 204/408 (50%), Positives = 262/408 (64%), Gaps = 31/408 (7%)

Query: 1   MKHRKLFPA-SESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSH---QSNSTP 56
           MKHRKLFP+ S +N T  C  +CDP CP  YNC P    Y+L PPPPPP     Q +   
Sbjct: 1   MKHRKLFPSLSTTNQTVDCPDFCDPACP--YNCYPYADYYFLPPPPPPPPPLLPQEHHLS 58

Query: 57  PYVIIFVALVLSFILFLAFYVIKSKT--GWCNSETNEGHQQAQSDGEDEDFVDENRIDHP 114
           PYVII V+++ SF L +++YVI +K+  GWC+S  N    Q+++D  DE+F+DEN++DHP
Sbjct: 59  PYVIILVSVLASFFLVVSYYVIIAKSCPGWCSSRNNRA-PQSEADNTDEEFLDENQVDHP 117

Query: 115 IWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHIS 174
           IW I T GLQQS+INSITVC+YKKGEGLIEGTECSVCL+EFQ+DET+RLLPKCNHAFHIS
Sbjct: 118 IWFITTAGLQQSIINSITVCKYKKGEGLIEGTECSVCLSEFQQDETLRLLPKCNHAFHIS 177

Query: 175 CIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELGENG 234
           CIDTWL SH NCP+CRAHIVH+ V  PL  + NQN D+ +  +    +++  D EL    
Sbjct: 178 CIDTWLRSHTNCPLCRAHIVHDPVPTPL-ISINQNPDNLNTIISTQMDNSEIDGELSNTQ 236

Query: 235 ERNREDCENRTETE---------ADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTI 285
           ERN    ENR   +         ++R LK++VN+  +   ++  DSG+D+Q  ++  Q +
Sbjct: 237 ERN----ENRAAADEGGETVHVGSERTLKEDVNSANSDNFEIFCDSGNDHQVAKSDIQPM 292

Query: 286 RRSVSLDSSLAETICLGLAD-FGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSS 344
           RRSVS+DS  A T    L D    ++  E S  QI    ++      S +  KQDG    
Sbjct: 293 RRSVSMDSLTAVTTNSSLKDTTSPIDLEENSVKQIDNPEQQY-----SEVAWKQDGGSVR 347

Query: 345 SFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL 392
           SF+   +SSI Q LHK  V MKRSFSCSGR  S     NRN  +ILPL
Sbjct: 348 SFKQMGSSSISQHLHKSPVPMKRSFSCSGRIFS--SRQNRNLVSILPL 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769273|emb|CAN61577.1| hypothetical protein VITISV_008030 [Vitis vinifera]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/416 (49%), Positives = 250/416 (60%), Gaps = 38/416 (9%)

Query: 1   MKHRKLFPA-SESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNST---- 55
           MKHRKLFP  + +N +  C  +CD  CP  YNC   P      PPP  P   + ST    
Sbjct: 3   MKHRKLFPTQTATNQSVDCLDFCDSTCP--YNCYIYPDSLIPPPPPASPRPPTLSTLDQN 60

Query: 56  -----PPYVIIFVALVLSFILFLAF--YVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDE 108
                 PYVII VAL+  F L + F   ++K   GW           ++SDG DE+F+DE
Sbjct: 61  DSPNISPYVIITVALLAGFFLLVCFNAIIVKYCCGW---RRRNRSPPSESDGRDEEFLDE 117

Query: 109 NR---IDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLP 165
           NR   IDHPIW I T GLQQ++INSITVC+YK+GEGLIEGTECSVCL+EFQEDET+RLLP
Sbjct: 118 NRGPAIDHPIWFITTAGLQQAIINSITVCKYKRGEGLIEGTECSVCLSEFQEDETLRLLP 177

Query: 166 KCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTG 225
           KCNHAFHI CIDTWLSSH NCP+CRA I+ + V  PL +  +QNS S         E++ 
Sbjct: 178 KCNHAFHIPCIDTWLSSHTNCPLCRARIISDIVNPPLESN-DQNSRSLGPNEQTQMENSS 236

Query: 226 NDRELGENGERNR---EDCENRTETEADRIL------KDNVNANENGALQVIDDSGDDNQ 276
           ND EL  N  R+R   E    R  T   +IL      K+ VN+N +  L+V  +S  +N 
Sbjct: 237 NDTELXNNLVRSRGVYESTVGRGGTGELQILDDERTSKEGVNSNGDVVLEVNGNSA-NNH 295

Query: 277 ALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVA 336
            + ++ Q +RRSVS+DSS A TI  GLA F   ES     D+ T D  K DS S    V 
Sbjct: 296 VVDSEIQPVRRSVSMDSSSAATIFFGLAKFHADESKGNWVDE-TMDGRKFDSGS----VP 350

Query: 337 KQDGAYSSSFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL 392
           K+D AY+S+FR   + SI Q LHK  +SMKRS SC GRF  P    NR+ NAILPL
Sbjct: 351 KRDVAYTSTFRQMGSPSIAQCLHKGPISMKRSNSCGGRFFLP--RHNRSTNAILPL 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492465|ref|XP_003634417.1| PREDICTED: RING-H2 finger protein ATL54-like [Vitis vinifera]

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 204/416 (49%), Positives = 250/416 (60%), Gaps = 38/416 (9%)

Query: 1   MKHRKLFPA-SESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNST---- 55
           MKHRKLFP  + +N +  C  +CD  CP  YNC   P      PPP  P   + ST    
Sbjct: 3   MKHRKLFPTQTATNQSVDCLDFCDSTCP--YNCYIYPDSLIPPPPPASPRPPTLSTLDQN 60

Query: 56  -----PPYVIIFVALVLSFILFLAF--YVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDE 108
                 PYVII VAL+  F L + F   ++K   GW           ++SDG DE+F+DE
Sbjct: 61  DSPNISPYVIITVALLAGFFLLVCFNAIIVKYCCGW---RRRNRSPPSESDGRDEEFLDE 117

Query: 109 NR---IDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLP 165
           NR   IDHPIW I T GLQQ++INSITVC+YK+GEGLIEGTECSVCL+EFQEDET+RLLP
Sbjct: 118 NRGPAIDHPIWFITTAGLQQAIINSITVCKYKRGEGLIEGTECSVCLSEFQEDETLRLLP 177

Query: 166 KCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTG 225
           KCNHAFHI CIDTWLSSH NCP+CRA I+ + V  PL +  +QNS S         E++ 
Sbjct: 178 KCNHAFHIPCIDTWLSSHTNCPLCRARIISDIVNPPLESN-DQNSRSLGPNEQTQMENSS 236

Query: 226 NDRELGENGERNR---EDCENRTETEADRIL------KDNVNANENGALQVIDDSGDDNQ 276
           ND EL  N  R+R   E    R  T   +IL      K+ VN+N +  L+V  +S  +N 
Sbjct: 237 NDTELDNNLVRSRGVYESTVGRGGTGELQILDDERTSKEGVNSNGDVVLEVNGNSA-NNH 295

Query: 277 ALQAQAQTIRRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVA 336
            + ++ Q +RRSVS+DSS A TI  GLA F   ES     D+ T D  K DS S    V 
Sbjct: 296 VVDSEIQPVRRSVSMDSSSAATIFFGLAKFHADESKGNWVDE-TMDGRKFDSGS----VP 350

Query: 337 KQDGAYSSSFRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL 392
           K+D AY+S+FR   + SI Q LHK  +SMKRS SC GRF  P    NR+ NAILPL
Sbjct: 351 KRDVAYTSTFRQMGSPSIAQCLHKGPISMKRSNSCGGRFFLP--RHNRSTNAILPL 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498809|ref|XP_003518241.1| PREDICTED: RING-H2 finger protein ATL54-like [Glycine max]

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 163/392 (41%), Positives = 215/392 (54%), Gaps = 53/392 (13%)

Query: 2   KHRKLFP---ASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSH-QSNSTPP 57
           KHRKLFP    + +N T  C  +CDP CP  YNC   P  ++  PPP      Q N    
Sbjct: 4   KHRKLFPDETTTTTNQTQDCYGFCDPACP--YNCYNNPDYFFSPPPPSISHSSQVNHISS 61

Query: 58  YVIIFVALVLSFILFLAFYVIKSK--TGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPI 115
           Y+II V L     + + FYVIK K    WC    N G   +QSD  +E F++EN++DHP+
Sbjct: 62  YLIILVTLFTVIFVVVGFYVIKVKCYAAWCGWRFNNGSVPSQSDTAEE-FLNENQVDHPV 120

Query: 116 WLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISC 175
           WLI TVGLQQS+INSITVC+YKK E L+EGTECSVCLNEFQE+ET+RLLPKCNHAFH+ C
Sbjct: 121 WLIATVGLQQSIINSITVCKYKKNERLVEGTECSVCLNEFQEEETLRLLPKCNHAFHVPC 180

Query: 176 IDTWLSSHINCPMCRAHIVHETVT----APLATTANQNSDSSSLAVDNHTEHTGNDRELG 231
           IDTWL SH NCP+CRA IV  +V     AP++ +  +N+                     
Sbjct: 181 IDTWLRSHTNCPLCRAGIVSSSVNSEAQAPVSNSEQENA--------------------- 219

Query: 232 ENGERNRED-CENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVS 290
            N ERN++   EN    E D  L  N+ A E+   + +D+S   ++        +  ++ 
Sbjct: 220 -NLERNQDTLLENSRNNECD--LSSNMVAGESS--EALDESNSKDRVNDQTQNDVVLNIE 274

Query: 291 LDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAK--QDGAY--SSSF 346
           +   L ET           ES   S+  +    +  D+  N+    K  QDG Y  S + 
Sbjct: 275 I---LTET-----GSVSTTESESESHRVVDDHKQHDDTMLNTVDQRKQEQDGEYYCSKTC 326

Query: 347 RLTRNSSIVQSLHKDSVSMKRSF-SCSGRFLS 377
           +  R SSI + LH + VSMKRSF SC+ R L+
Sbjct: 327 KAMRRSSIEECLHLNPVSMKRSFSSCNRRILT 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465766|ref|XP_002266755.1| PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 161/401 (40%), Positives = 218/401 (54%), Gaps = 37/401 (9%)

Query: 3   HRKLFPASESNGTTSCSYYCDPN------CPFN--YNCVPLPGIYYLEPPPPPPSHQSNS 54
           HRKLF  S+ N T  C +YCD        CP +   +C PL   Y      PP   ++  
Sbjct: 5   HRKLFSDSD-NTTEECRWYCDSGSNDSGICPPSCCSDC-PLVCSYSTSTRSPP--RKAEK 60

Query: 55  TPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENR---I 111
             PY++I ++++ +    +  YV   K       +   + QA ++G  +DF+DE++   +
Sbjct: 61  LSPYLVICLSVLATTFFVVFLYVFYKKYYSRRRLSRRRNSQAPAEGAHDDFIDEDQEPVV 120

Query: 112 DHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAF 171
           DHPIW I TVGLQ SVI++IT+C+YK+G+GL+EGTECSVCL EF+EDE VRLLPKCNHAF
Sbjct: 121 DHPIWYIRTVGLQPSVISAITICKYKRGDGLVEGTECSVCLAEFEEDEAVRLLPKCNHAF 180

Query: 172 HISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTGNDRELG 231
           HI CIDTWLSSH NCPMCRA IV  T  AP    + +NS     A     E+ G   E+ 
Sbjct: 181 HIPCIDTWLSSHTNCPMCRAGIVSSTAGAPSPEQSVENSGPLEEARVEIPENGGQFEEIE 240

Query: 232 ENGERNREDCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSL 291
           +      E CE R   E +   +     NE  + +V  +  D       + Q +RRSVS+
Sbjct: 241 D------EVCELRIGREEEG--ELGGVENERSSCEVAKEEVD-------EIQPMRRSVSM 285

Query: 292 DSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSSFRLTRN 351
           DS  A  I L LA+    +S   S  Q+    +     S   IV K+ G   S  +L  +
Sbjct: 286 DSLSASMISLALANVHPQKSNGNSDSQLANSKK-----SIMPIVPKRVGGNQSLVKLMES 340

Query: 352 SSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL 392
           SS+ + L   S SMKRSFSCSG+    L   NR  +++LPL
Sbjct: 341 SSMGRILQSGSTSMKRSFSCSGKLF--LLRHNRRRSSVLPL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551725|ref|XP_003544224.1| PREDICTED: RING-H2 finger protein ATL54-like [Glycine max]

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 162/390 (41%), Positives = 213/390 (54%), Gaps = 49/390 (12%)

Query: 2   KHRKLFP--ASESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSH----QSNST 55
           KHRKLFP   + +N T  C  +CDP CP  YNC   P  ++  PPPPPPS     Q N  
Sbjct: 4   KHRKLFPDETATTNQTQDCYGFCDPACP--YNCYNNPDYFFSPPPPPPPSISHSSQVNHI 61

Query: 56  PPYVIIFVALVLSFILFLAFYVIKSK--TGWCNSETNEGHQQAQSDGEDEDFVDENRIDH 113
             Y II V L     + + FYVIK K    WC    +       SD   E+F++EN++DH
Sbjct: 62  SSYFIILVTLFTVIFVVVGFYVIKVKCYATWCGWRFS--GSVPSSDTTTEEFLNENQVDH 119

Query: 114 PIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHI 173
           P+WLI TVGLQ+S+INSITVC+YKK EGL+EGTECSVCLNEFQE+ET+RLLPKCNHAFH+
Sbjct: 120 PVWLIATVGLQESIINSITVCKYKKNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHV 179

Query: 174 SCIDTWLSSHINCPMCRAHIVHETVT--APLATTANQNSDSSSLAVDNHTEHTGNDRELG 231
            CIDTWL SH NCP+CRA IV  +V   AP A  +N   ++++L  +  T    ++  + 
Sbjct: 180 PCIDTWLRSHTNCPLCRAGIVSNSVNSEAP-APVSNSEQENANLGRNQDT--LLDNSRIN 236

Query: 232 ENGERNREDCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSL 291
           E G  +       +E   +   KD VN          D++ ++   +  + QT   SVS 
Sbjct: 237 EGGLSSNMVAGESSEAIDESNSKDRVN----------DETQNNGVLMNIEIQTEMGSVST 286

Query: 292 DSSLAETICLGLADFGLLESCE-FSYDQITKDAEKSDSHSNSAIVAKQDG--AYSSSFRL 348
                               CE        K  + +  H+++     QDG   YS + + 
Sbjct: 287 T------------------ECESHRVVDDHKHDDDTMLHTDNLGKQDQDGDYYYSKTCKT 328

Query: 349 TRNSSIVQSLHKDSVSMKRSF-SCSGRFLS 377
            R SSI + LH   VSMKRSF SC+GR L+
Sbjct: 329 VRRSSIEECLHLSPVSMKRSFSSCNGRTLT 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142008|emb|CBI19211.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 157/248 (63%), Gaps = 21/248 (8%)

Query: 1   MKHRKLFPA-SESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNST---- 55
           MKHRKLFP  + +N +  C  +CD  CP  YNC   P      PPP  P   + ST    
Sbjct: 25  MKHRKLFPTQTATNQSVDCLDFCDSTCP--YNCYIYPDSLIPPPPPASPRPPTLSTLDQN 82

Query: 56  -----PPYVIIFVALVLSFILFLAF--YVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDE 108
                 PYVII VAL+  F L + F   ++K   GW           ++SDG DE+F+DE
Sbjct: 83  DSPNISPYVIITVALLAGFFLLVCFNAIIVKYCCGW---RRRNRSPPSESDGRDEEFLDE 139

Query: 109 NR---IDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLP 165
           NR   IDHPIW I T GLQQ++INSITVC+YK+GEGLIEGTECSVCL+EFQEDET+RLLP
Sbjct: 140 NRGPAIDHPIWFITTAGLQQAIINSITVCKYKRGEGLIEGTECSVCLSEFQEDETLRLLP 199

Query: 166 KCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTG 225
           KCNHAFHI CIDTWLSSH NCP+CRA I+ + V  PL +  +QNS S         E++ 
Sbjct: 200 KCNHAFHIPCIDTWLSSHTNCPLCRARIISDIVNPPLESN-DQNSRSLGPNEQTQMENSS 258

Query: 226 NDRELGEN 233
           ND EL  N
Sbjct: 259 NDTELDNN 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489801|ref|XP_003615188.1| RING-H2 finger protein ATL1O [Medicago truncatula] gi|355516523|gb|AES98146.1| RING-H2 finger protein ATL1O [Medicago truncatula]

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 197/388 (50%), Gaps = 72/388 (18%)

Query: 3   HRKLFPAS-ESNGTTSCSYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNSTPPYVII 61
            RKLFP    +N T  C  +CDP+CP   NC      YY  PPP   + Q N    Y II
Sbjct: 5   QRKLFPTEPTTNQTLDCYGFCDPSCP--SNCYTNTN-YYFSPPPLEHTTQVNHVSSYFII 61

Query: 62  FVALVLSFILFLAFYVIKSKT-----GWCNSETNEGHQQAQSDGED-EDFVDENRID--- 112
            ++L     + + FYVIK K      GW        +   +S  E+ E+F++EN++D   
Sbjct: 62  LISLFSLIFIIIGFYVIKVKCYNEMCGW------RINNSVRSQTENSEEFLNENQVDRDH 115

Query: 113 ---HPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNH 169
              HP+WLI TVGLQQS+INSITVC+Y+K EGLIEGTECSVCLNEF EDET+RLLPKC+H
Sbjct: 116 NRDHPVWLIATVGLQQSIINSITVCKYRKNEGLIEGTECSVCLNEFHEDETLRLLPKCSH 175

Query: 170 AFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSSLA--VDNHTEHTGND 227
           AFHISCIDTWL SH NCP+CRA IV   VT P  T  N   +++ L    + H E+  ND
Sbjct: 176 AFHISCIDTWLRSHTNCPLCRAGIVSNNVT-PEVTIPNSEQENNILGRNQETHLENPRND 234

Query: 228 RE-LGENGERNREDCENRTETEADRILKDNVNANENGALQVIDDSGDDNQALQAQAQTIR 286
           +E +  N        E R ET  +    D  N  E    Q+IDD    N  +Q       
Sbjct: 235 QEDVLSNNIVINVTFETRVETTGES--SDESNYKE----QIIDDPTVTNDEIQ------- 281

Query: 287 RSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSSF 346
                             + GL+ +   SY QI+     ++ +S S              
Sbjct: 282 -----------------IEMGLVSTEPGSYHQISPWKLITEKNSKS-------------- 310

Query: 347 RLTRNSSIVQSLHKDSVSMKRSFSCSGR 374
             TR S I + LH   ++MK+ F    R
Sbjct: 311 --TRRSPIEERLHVKPIAMKKFFPLHQR 336

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480496|ref|XP_003632477.1| PREDICTED: uncharacterized protein LOC100854068 [Vitis vinifera]

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/347 (41%), Positives = 204/347 (58%), Gaps = 24/347 (6%)

Query: 59  VIIFVALVLSFILFLA---FYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENR---ID 112
           ++IF+   L  + F+      V+K  +GW  S  ++   Q  +    EDF+DE +   + 
Sbjct: 37  ILIFIVCTLGAVFFVVSCCTVVLKYYSGWNRSRRSDPPVQNHTH---EDFIDEEQSPVVY 93

Query: 113 HPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFH 172
           HPIWLI+TVGLQQSVI+ ITV +Y K EGLIEGTECSVCL EF+EDE++RLLPKC+HAFH
Sbjct: 94  HPIWLINTVGLQQSVIDLITVIKYNKEEGLIEGTECSVCLGEFEEDESLRLLPKCSHAFH 153

Query: 173 ISCIDTWLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSS---LAVDNHTEHTG-NDR 228
           + CIDTWL SH NCP+CRA I+HE V + L      ++DS S   + +DN   H+G    
Sbjct: 154 VPCIDTWLRSHKNCPLCRAPIIHENVGSHLNAVEQDSNDSGSREDMEIDNSETHSGLGSS 213

Query: 229 ELGENGERNRE-DCENRTETEADRILKDNVNANENGA--LQVIDDSGDDNQALQAQAQTI 285
           E+GE G            E   + I++  +     G   L+V+ D  D+++A + Q + +
Sbjct: 214 EVGEGGTAEVGVGVLAVEEARTNEIVRKGLPYMNAGKYELRVLSDLVDNHRASEEQIEPV 273

Query: 286 RRSVSLDSSLAETICLGLADFGLLESCEFSYDQITKDAEKSDSHSNSAIVAKQDGAYSSS 345
           RRSVS+D S A  I L +A+   +E  E + D  +   +K     N  IVA+Q    SS 
Sbjct: 274 RRSVSMDLSAASEIYLAMANAVPVEH-EGTSDMRSVPGKK----LNLEIVARQSCRNSSL 328

Query: 346 FRLTRNSSIVQSLHKDSVSMKRSFSCSGRFLSPLCNSNRNPNAILPL 392
           ++L ++SSI  SLH+  +SMK+S S    F S     +R+ ++ILPL
Sbjct: 329 YKLMKSSSIGCSLHRGPLSMKKSLSSFPMFSS---RRSRSRDSILPL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2207066	413	AT1G72220 [Arabidopsis thalian	0.362	0.343	0.571	2.3e-52
TAIR|locus:2142449	301	RING1 [Arabidopsis thaliana (t	0.382	0.498	0.493	3.5e-38
TAIR|locus:505006547	367	AT4G33565 [Arabidopsis thalian	0.441	0.471	0.418	3.5e-36
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.676	0.732	0.295	1.4e-30
TAIR|locus:4515103413	310	ATL4H [Arabidopsis thaliana (t	0.502	0.635	0.372	1.6e-30
TAIR|locus:2096444	356	AT3G03550 [Arabidopsis thalian	0.466	0.514	0.359	6.4e-28
UNIPROTKB|Q7XLY8	383	LOC_Os04g50100 "E3 ubiquitin-p	0.632	0.647	0.296	7.3e-27
TAIR|locus:2199902	369	AT1G23980 [Arabidopsis thalian	0.326	0.346	0.395	1.2e-21
TAIR|locus:2018334	381	AT1G04360 [Arabidopsis thalian	0.265	0.272	0.406	7.6e-19
TAIR|locus:2181032	159	DAFL2 "DAF-Like gene 2" [Arabi	0.186	0.459	0.506	6.7e-18

TAIR|locus:2207066 AT1G72220 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 84/147 (57%), Positives = 105/147 (71%)

Query:    59 VIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGED----EDFVDENRIDHP 114
             +I     VL+ +L   F V K  +   N   N+G  Q+ ++  D    E+F D  ++DHP
Sbjct:    85 IITITGAVLAILLTGFFLVAKFFSDSVN-RVNQGTYQSDNEDNDTVMEEEFQDREQVDHP 143

Query:   115 IWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHIS 174
             IWLI T GLQQS+INSIT+C YK+G+GLIE T+C VCLNEF+EDE++RLLPKCNHAFHIS
Sbjct:   144 IWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHIS 203

Query:   175 CIDTWLSSHINCPMCRAHIVHETVTAP 201
             CIDTWLSSH NCP+CRA I   +VT P
Sbjct:   204 CIDTWLSSHTNCPLCRAGIAMISVTTP 230

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2142449 RING1 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 77/156 (49%), Positives = 101/156 (64%)

Query:    59 VIIFVALVLSFILFLAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLI 118
             +I+F+ LV    L +      S       +TN+  Q+ + + E+ DF D     H +W I
Sbjct:    52 IILFLFLVFFLYLHITQQRRISAASVTPGDTNQ--QEDEDETEERDFSDF----HHVWQI 105

Query:   119 HTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178
              TVGL +S INSITV  +KKGEG+I+GTECSVCLNEF+EDE++RLLPKC+HAFH++CIDT
Sbjct:   106 PTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDT 165

Query:   179 WLSSHINCPMCRAHIVHETVTAPLATTANQNSDSSS 214
             WL SH NCP+CRA ++  T      T  N   DS S
Sbjct:   166 WLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSES 201

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP;RCA

GO:0012501 "programmed cell death" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:505006547 AT4G33565 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 75/179 (41%), Positives = 101/179 (56%)

Query:    18 CSYYCDPNCPFNYNCVPLPGIYY-LEXXXXXXXXXXXXXXXYVIIFVALVLSF-ILFLAF 75
             CS YC   CP     V + G+    E                 II    +L+  +L   F
Sbjct:    89 CSSYCLDECPSICEIVVISGLSPPAEIHHDDNLKRILIISASSIITTLFLLTLLVLCFKF 148

Query:    76 YVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCR 135
             Y  + ++      T+      ++   D D      +DHPIW I T+GL  +VI+SI VC+
Sbjct:   149 YYRRRRS----ITTSRRWSMEEARNWDFDGPAPVIVDHPIWHIRTIGLNPTVISSIKVCQ 204

Query:   136 YKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
             Y K +G++EGT+CSVCL+EF+E+ET+RLLPKC HAFH+ CIDTWL SH NCP+CRA IV
Sbjct:   205 YSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPIV 263

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 84/284 (29%), Positives = 144/284 (50%)

Query:    18 CSYYCDPNCPFNYNCVPLPGIYYLEXXXXXXXXXXXXXXXYVIIFVALVLSFILFLAFYV 77
             C+ YC   C   +   P P  ++L+                +I  + ++ S ++ +++Y 
Sbjct:    22 CNIYCPQWCYLIFP--PPPPSFFLDDDSSSSSSSFSPL---LIALIGILTSALILVSYYT 76

Query:    78 IKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYK 137
             + SK    + +T+       +   +  F    RI       +  GL +S+I SITV +YK
Sbjct:    77 LISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRIS-----TNGDGLNESMIKSITVYKYK 131

Query:   138 KGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197
              G+G ++G++CSVCL+EF+E+E++RLLPKCNHAFH+ CIDTWL SH NCP+CRA +    
Sbjct:   132 SGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTG-- 189

Query:   198 VTAPLATTANQNSDSSSLAVDNHTEHTXXXXXXXXXXXXXXXXCENRT-ETEADRILKD- 255
             V  P A+   QN    S+ V N + ++                 E++T + ++  +++D 
Sbjct:   190 VNNPTASVG-QNV---SVVVANQS-NSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDL 244

Query:   256 NVNANENGALQVIDDSGDDNQALQAQAQTIRRSVSLDSSLAETI 299
              + +  + A   +    +  +     +  IRRSVSL+S +  +I
Sbjct:   245 EIGSRNSDARSELQLPEERRETKDEDSLPIRRSVSLNSGVVVSI 288

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:4515103413 ATL4H [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 83/223 (37%), Positives = 109/223 (48%)

Query:    18 CSYYCDPNCPFNYNCVPLPGIYYLEXXXXXXXXXXXXXXXYVIIFVALVLSFILFLAFYV 77
             CS +C   C +  N  P P I Y +                + IF     +F+L  A+Y 
Sbjct:    24 CSTFCPQWCTY-INFSP-PPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLL-AAYYT 80

Query:    78 IKSKTGWC-NSETNEGHQQAQSDGEDEDFVDENRI-----DHPIWL-IHTVGLQQSVINS 130
             + SK  +C N  TNE    A   G  +  +D N       D P  L   T GL  ++I  
Sbjct:    81 LVSK--YCANDTTNEA---ASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKK 135

Query:   131 ITVCRYKKGE-GL-IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPM 188
             I   + KK + G  I GT+CS+CL EF EDE++RLLPKCNH FH+ CID WL SH NCP+
Sbjct:   136 IGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPL 195

Query:   189 CRAHIV--------HETVTAPLAT-TANQNSDSSSLAVDNHTE 222
             CRA I+        H  V   L   T+N  S   ++ VD+H E
Sbjct:   196 CRAKIIVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDDHRE 238

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2096444 AT3G03550 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 73/203 (35%), Positives = 106/203 (52%)

Query:    18 CSYYCDPNCPFNYNCVPLPGIYYLEXXXXXXXXXXXXXXXYVIIFVALVLSFILFLAFYV 77
             CS YC   C   Y   P P  +YL+                +I  + ++ S  + +++Y 
Sbjct:    25 CSVYCPQWC---YVIFPPPPSFYLDDEDDSSSSDFSPL---LIALIGILASAFILVSYYT 78

Query:    78 IKSKTGWCNSET-NEGHQQAQSDGE-DEDFV-------DENRIDHPIWLIHTVG---LQQ 125
             + SK  +C+    N     A +      D+        + N   +P   I   G   L +
Sbjct:    79 LISK--YCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDE 136

Query:   126 SVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN 185
             S+I SITV +Y+K +G +E ++CSVCL+EFQE+E++RLLPKCNHAFH+ CIDTWL SH N
Sbjct:   137 SLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSN 196

Query:   186 CPMCRAHIVHETVTAPLATTANQ 208
             CP+CRA IV  +    +  T  Q
Sbjct:   197 CPLCRAFIVTSSAVEIVDLTNQQ 219

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|Q7XLY8 LOC_Os04g50100 "E3 ubiquitin-protein ligase Os04g0590900" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 78/263 (29%), Positives = 114/263 (43%)

Query:    18 CSYYCDPNCPFNYNCVPLPGIYYLEXXXXXXXXXXXXXXXYVIIFVALVLSFIL-----F 72
             CS YC   C F +   P P  + +                 + I   L  +F+L     F
Sbjct:    22 CSMYCPQWCYFIF---PPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTF 78

Query:    73 LAFY--VIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRIDHPIWLIHTV-GLQQSVIN 129
             ++ Y   + S  G     ++ G       G            H  W +    GL +++IN
Sbjct:    79 ISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLIN 138

Query:   130 SITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189
              ITVC+Y++G+G +  T+CSVCL EF + E++RLLP+C+HAFH  CIDTWL SH NCP+C
Sbjct:   139 KITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLC 198

Query:   190 RAHIVHETVTAPLATTANQNSDSSSLAVDNHTEHTXXXXXXXXXXXXXXXXCENRTETEA 249
             RA+I    VT  LA+   +         DN  E                      +  + 
Sbjct:   199 RANITF--VTVGLASPEPEGCAPGETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADD 256

Query:   250 DRILKDNVNANE--NGALQVIDD 270
             D   KD     E  NGA ++ ++
Sbjct:   257 DHDAKDVAEGMEEANGAAEIREE 279

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2199902 AT1G23980 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 55/139 (39%), Positives = 81/139 (58%)

Query:    59 VIIFVALVLSFILF-------LAFYVIKSKTGWCNSETNEGHQQAQSDGEDEDFVDENRI 111
             +I+F+ ++LS I F       L  Y +K K    +S  NE +Q  +    D       ++
Sbjct:    52 IILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQL 111

Query:   112 DHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAF 171
              H    +H  GL Q++I+++ V  YK+ +G  E  +C+VCL EF ED+ +RLLP C+HAF
Sbjct:   112 FH----LHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAF 167

Query:   172 HISCIDTWLSSHINCPMCR 190
             HI CIDTWL S+  CP+CR
Sbjct:   168 HIDCIDTWLLSNSTCPLCR 186

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2018334 AT1G04360 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
 Identities = 48/118 (40%), Positives = 69/118 (58%)

Query:   107 DENRIDHPIWLIHTV--GLQQSVINSITVCRYKKGEGLIEGTE--------CSVCLNEFQ 156
             D+N +   I+  H V  GL +S I +I V ++KK + ++ G E        CSVCLNEFQ
Sbjct:    86 DQNPL--MIYSPHEVNRGLDESAIRAIPVFKFKKRD-VVAGEEDQSKNSQECSVCLNEFQ 142

Query:   157 EDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE-TVTAPLATTANQNSDSS 213
             EDE +R++P C H FHI CID WL  + NCP+CR  +  E + T  L +  +   ++S
Sbjct:   143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENS 200

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2181032 DAFL2 "DAF-Like gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.7e-18, P = 6.7e-18
 Identities = 37/73 (50%), Positives = 49/73 (67%)

Query:   122 GLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS 181
             GL++  +    V  Y  GE  I  TEC++CL EF + E VR+LP CNH+FH+SCIDTWL 
Sbjct:    79 GLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLV 138

Query:   182 SHINCPMCRAHIV 194
             SH +CP CR  ++
Sbjct:   139 SHSSCPNCRHSLI 151

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003088801 hypothetical protein (389 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-14
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-11
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	5e-10
smart00184	40	smart00184, RING, Ring finger	8e-08
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	3e-06
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	3e-06
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-05
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	1e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	1e-04
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	0.003
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAH 192
           EC +CL+EF+  E V +LP C H FH  C+D WL S   CP+CRA 
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL-SSHINCPMCRAHI 193
           EC +CL EF+E     +L  C H F  SCID WL S    CP+CR  I
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 143 IEGTECSVCLNEFQE---------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
           IE   C++C N F           D+   +  +C HAFH+ CI  WL +   CP+CR
Sbjct: 17  IEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 111 IDHPIWLIHTVGLQQS---VINSITVCRYKK--GEGLIE---GTECSVCLNEFQEDETVR 162
           I   I +   VG   S   +  + T    K    E  +E   G EC++C++ F +++ +R
Sbjct: 281 IILEIQINFDVGFYSSSEAIPTTTTKGSLKPLSIERAVEADKGVECAICMSNFIKNDRLR 340

Query: 163 LLPKCNHAFHISCIDTWLSSHIN-CPMCRAHI 193
           +LP C+H FH+ C+D WL  + N CP+CR  I
Sbjct: 341 VLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL-SSHINCPMC 189
           C +CL E+ +D    +LP C H F  SCI  WL S +  CP+C
Sbjct: 1   CPICLEEYLKD--PVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 144 EGTECSVCLNEFQEDETVR----LLPKCNHAFHISCIDTWLSSHINCPMCR 190
           +  EC++C+ +  + E       +L  CNH F I CID W      CP+CR
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMC 189
           C +CL E    + V +LP C H F   CI +WL S ++ CP+C
Sbjct: 1   CPICLEEP--KDPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 12/55 (21%)

Query: 148 CSVCLNEFQE------------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
           C++C N                DE   +   CNHAFH  CI  WL +   CP+ R
Sbjct: 23  CAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191
           EC +CL+  ++   V L P C H F   CI  +L     CP+CR 
Sbjct: 4   ECPICLDLLRD--PVVLTP-CGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL---SSHINCPMCR 190
           C  C  +F  D+   +  KC H FH+ CI  WL   +S   CPMCR
Sbjct: 35  CPQC--KFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 148 CSVCLNEFQE----------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197
           C++C++E             D T + LP C H  H+ C+  WL     CP+CR  ++ + 
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348

Query: 198 VTAPLATTANQNSDSSSLAV 217
            +   A+   +N+  ++   
Sbjct: 349 SSPTPASPNVRNTQIATQVP 368

Length = 491

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 147 ECSVCL-----NEFQEDETVRLLPKCNHAFHISCIDTW------LSSHINCPMCRAHIVH 195
           EC +C         + D    LL  CNH F I+CI+ W        +  NCP+CR    +
Sbjct: 172 ECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231

Query: 196 ETVT 199
            T++
Sbjct: 232 ITMS 235

Length = 242

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 19 SYYCDPNCPFNYNCVPLPGIYYLEPPPPPPSHQSNSTPPYV 59
               P  P+ Y   P P    +   PPPP ++S   P YV
Sbjct: 10 VKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYV 50

Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.74
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.44
PHA02929	238	N1R/p28-like protein; Provisional	99.22
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.17
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.16
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.11
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.85
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.82
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.8
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.72
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.72
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.67
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.67
PHA02926	242	zinc finger-like protein; Provisional	98.66
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.59
PF14634	44	zf-RING_5: zinc-RING finger domain	98.52
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.5
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.49
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.48
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.46
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.44
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.43
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.31
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.27
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.24
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.07
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.05
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.01
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.96
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.93
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.85
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.81
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.78
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.73
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.72
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.72
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.64
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.56
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.41
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.32
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.31
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.15
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.09
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.09
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.98
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.95
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.65
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.48
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.48
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.26
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.1
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.03
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.03
PHA02862	156	5L protein; Provisional	95.71
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.63
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.46
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.43
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.97
KOG2660	331	consensus Locus-specific chromosome binding protei	94.96
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.72
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.39
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.28
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.22
PHA03096	284	p28-like protein; Provisional	94.13
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.06
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.05
COG5152	259	Uncharacterized conserved protein, contains RING a	94.02
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.96
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	92.61
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	92.53
COG5222	427	Uncharacterized conserved protein, contains RING Z	92.39
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	92.08
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	91.93
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.26
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.2
KOG4739	233	consensus Uncharacterized protein involved in syna	91.0
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.66
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	90.62
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	90.6
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	90.49
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	90.27
KOG1940	276	consensus Zn-finger protein [General function pred	90.07
PF04641	260	Rtf2: Rtf2 RING-finger	89.96
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	89.41
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	89.39
KOG1001	674	consensus Helicase-like transcription factor HLTF/	87.75
COG5175	480	MOT2 Transcriptional repressor [Transcription]	87.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.01
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	86.62
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	85.27
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	84.25
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	83.98
KOG0298	1394	consensus DEAD box-containing helicase-like transc	83.02
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	80.77

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.1e-18  Score=168.36  Aligned_cols=78  Identities=29%  Similarity=0.846  Sum_probs=68.3

Q ss_pred             cCCCHHHHhhcceeEecCCCCcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCC-CCcccccccCCCCC
Q 016298          121 VGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHIVHETVT  199 (392)
Q Consensus       121 ~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~t-CPlCR~~v~~~~~~  199 (392)
                      ..+.+..+.++|+..|+........+.|+||||+|..|+++|+|| |+|.||..||++||.++.+ ||+|++.+......
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~  283 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS  283 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence            456788999999999999776655579999999999999999999 9999999999999988855 99999988765443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.44  E-value=2.6e-14  Score=101.71  Aligned_cols=44  Identities=52%  Similarity=1.254  Sum_probs=40.6

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR  190 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR  190 (392)
                      ++|+||+++|..++.+..++ |+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999999999999 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.22  E-value=8.1e-12  Score=119.22  Aligned_cols=75  Identities=25%  Similarity=0.621  Sum_probs=58.4

Q ss_pred             ccCCCHHHHhhcceeEecCC--CCcccCCcccccccccccCCc----eeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298          120 TVGLQQSVINSITVCRYKKG--EGLIEGTECSVCLNEFQEDET----VRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI  193 (392)
Q Consensus       120 ~~gl~~~~i~~lp~~~~~~~--~~~~~~~~C~ICle~~~~~~~----vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v  193 (392)
                      ..+..+.+++.+|.+..+..  .....+.+|+||++.+.+++.    +.+++.|+|.||..||.+|++.+.+||+||..+
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            35678999999998865432  233356899999999876431    234444999999999999999999999999987


Q ss_pred             c
Q 016298          194 V  194 (392)
Q Consensus       194 ~  194 (392)
                      .
T Consensus       227 ~  227 (238)
T PHA02929        227 I  227 (238)
T ss_pred             e
Confidence            5

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.17  E-value=1.1e-11  Score=97.93  Aligned_cols=45  Identities=33%  Similarity=1.001  Sum_probs=36.2

Q ss_pred             CCcccccccccccC----------CceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298          145 GTECSVCLNEFQED----------ETVRLLPKCNHAFHISCIDTWLSSHINCPMCR  190 (392)
Q Consensus       145 ~~~C~ICle~~~~~----------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR  190 (392)
                      ++.|+||++.|.+.          -.+...+ |+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            55699999999432          2445555 999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.3e-11  Score=119.30  Aligned_cols=72  Identities=25%  Similarity=0.716  Sum_probs=53.0

Q ss_pred             CCHHHHhhcceeEecCCCCcccCCcccccccc-cccC---------CceeecCCCCCcCChhHHHHHHhcCCCCCccccc
Q 016298          123 LQQSVINSITVCRYKKGEGLIEGTECSVCLNE-FQED---------ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAH  192 (392)
Q Consensus       123 l~~~~i~~lp~~~~~~~~~~~~~~~C~ICle~-~~~~---------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~  192 (392)
                      ..+++-+.+|+......  ...+..|.||+++ |+.+         .+.+.|| |||+||.+|++.|++++++||+||.+
T Consensus       267 ~~kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p  343 (491)
T COG5243         267 ATKDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP  343 (491)
T ss_pred             HhhHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence            34444445554433332  2347899999999 4443         2567899 99999999999999999999999999


Q ss_pred             ccCCC
Q 016298          193 IVHET  197 (392)
Q Consensus       193 v~~~~  197 (392)
                      +..+.
T Consensus       344 ~ifd~  348 (491)
T COG5243         344 VIFDQ  348 (491)
T ss_pred             ccccc
Confidence            65543

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.4e-11  Score=116.58  Aligned_cols=51  Identities=41%  Similarity=1.168  Sum_probs=46.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~  195 (392)
                      .+.+|+|||+.|..++.+++|| |.|.||..|+++|+. -+..||+||+++++
T Consensus       322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3579999999999999999999 999999999999998 55679999999865

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.85  E-value=2.3e-09  Score=74.31  Aligned_cols=44  Identities=59%  Similarity=1.287  Sum_probs=37.1

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccc
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHI  193 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v  193 (392)
                      +|+||++.+  .+.+.+.+ |+|.||..|++.|++. ...||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  34466666 9999999999999987 77799998764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.82  E-value=1.8e-09  Score=78.74  Aligned_cols=46  Identities=37%  Similarity=0.909  Sum_probs=39.6

Q ss_pred             CCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      +..|.||++...+   +..+| |||. |+..|+..|++....||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            5689999998654   78888 9999 999999999999999999999874

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.80  E-value=2.7e-09  Score=86.23  Aligned_cols=52  Identities=35%  Similarity=0.815  Sum_probs=40.2

Q ss_pred             cCCccccccccccc--------C-CceeecCCCCCcCChhHHHHHHhc---CCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQE--------D-ETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~--------~-~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~v~~  195 (392)
                      +++.|.||+..|..        + +...++..|+|.||..||.+||.+   +..||+||+.+..
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            37899999999973        1 222334459999999999999985   4679999998754

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.72  E-value=1.2e-08  Score=94.33  Aligned_cols=52  Identities=25%  Similarity=0.787  Sum_probs=41.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----------------CCCCCcccccccCCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----------------HINCPMCRAHIVHETVT  199 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----------------~~tCPlCR~~v~~~~~~  199 (392)
                      ++.+|+||++.+.+   ..+++ |||.||..||..|+..                ...||+||..+......
T Consensus        17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv   84 (193)
T PLN03208         17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV   84 (193)
T ss_pred             CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence            35789999999865   45577 9999999999999852                24699999999765443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.72  E-value=5.8e-09  Score=72.30  Aligned_cols=39  Identities=38%  Similarity=1.137  Sum_probs=33.2

Q ss_pred             ccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcc
Q 016298          148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC  189 (392)
Q Consensus       148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlC  189 (392)
                      |+||++.+.+  .+..++ |||.||.+||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999876  456787 99999999999999998899998

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=6.2e-09  Score=110.71  Aligned_cols=52  Identities=33%  Similarity=0.882  Sum_probs=45.7

Q ss_pred             cCCcccccccccccCCc--eeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDET--VRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~--vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      .+..|+||+|++..+..  .+.|| |+|+||..|+..|+++.++||.||..+...
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY  343 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence            47899999999988654  77888 999999999999999999999999955443

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=8.2e-09  Score=99.87  Aligned_cols=49  Identities=35%  Similarity=0.826  Sum_probs=43.0

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      ...|.+||+...+   ...+| |||+||..||..|...+..||+||..+.+..
T Consensus       239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            4689999999765   56688 9999999999999999999999999886654

>PHA02926 zinc finger-like protein; Provisional

Probab=98.66  E-value=8e-09  Score=96.83  Aligned_cols=55  Identities=33%  Similarity=0.817  Sum_probs=41.1

Q ss_pred             CcccCCcccccccccccCC-----ceeecCCCCCcCChhHHHHHHhcC------CCCCcccccccC
Q 016298          141 GLIEGTECSVCLNEFQEDE-----TVRLLPKCNHAFHISCIDTWLSSH------INCPMCRAHIVH  195 (392)
Q Consensus       141 ~~~~~~~C~ICle~~~~~~-----~vr~lp~C~H~FH~~CI~~Wl~~~------~tCPlCR~~v~~  195 (392)
                      ....+.+|+||||..-...     .-.+|+.|+|.||..||..|...+      .+||+||..+..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            3345789999999864321     223565699999999999999753      359999998753

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.59  E-value=1.9e-08  Score=79.76  Aligned_cols=52  Identities=37%  Similarity=0.678  Sum_probs=39.8

Q ss_pred             CCccccccccccc------------CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          145 GTECSVCLNEFQE------------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       145 ~~~C~ICle~~~~------------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      -+.|+||...|.+            ++.....-.|+|.||..||.+||..+..||++|+.+...
T Consensus        20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            3678888777643            223333445999999999999999999999999987543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.52  E-value=6.3e-08  Score=68.93  Aligned_cols=44  Identities=30%  Similarity=0.933  Sum_probs=38.5

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA  191 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~  191 (392)
                      .|.||++.|......++++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996666788888 9999999999999866778999985

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=4.8e-08  Score=92.06  Aligned_cols=53  Identities=28%  Similarity=0.739  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcccccccCCCCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMCRAHIVHETVTAP  201 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~v~~~~~~~~  201 (392)
                      .-+|.|||+.-++   .+++. |||.||..||-+||+.+.   .||+|+..|..+...+.
T Consensus        47 ~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   47 FFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL  102 (230)
T ss_pred             ceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence            5689999998654   34455 999999999999998543   49999999988776554

>smart00184 RING Ring finger

Probab=98.49  E-value=8.4e-08  Score=64.08  Aligned_cols=38  Identities=45%  Similarity=1.207  Sum_probs=32.6

Q ss_pred             ccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcc
Q 016298          148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMC  189 (392)
Q Consensus       148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlC  189 (392)
                      |+||++..   .....++ |+|.||..|++.|+. ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999883   3577788 999999999999998 66679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.48  E-value=5.1e-08  Score=67.87  Aligned_cols=39  Identities=44%  Similarity=1.289  Sum_probs=33.2

Q ss_pred             ccccccccccCCceeecCCCCCcCChhHHHHHHh--cCCCCCcc
Q 016298          148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS--SHINCPMC  189 (392)
Q Consensus       148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCPlC  189 (392)
                      |+||++.+...  +++++ |+|.||..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999998764  35787 999999999999998  45569998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6.2e-08  Score=87.97  Aligned_cols=51  Identities=33%  Similarity=0.784  Sum_probs=42.1

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      -..|+|||+.+.....  +..+|||+||..||+.-++....||+||..|..+.
T Consensus       131 ~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            3689999999976432  33359999999999999999999999998776553

>smart00504 Ubox Modified RING finger domain

Probab=98.44  E-value=1.8e-07  Score=70.70  Aligned_cols=48  Identities=25%  Similarity=0.549  Sum_probs=41.2

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      ..|+||++.+.+.   .+++ |||+|+..||..|++.+.+||+|+..+....
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~   49 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHED   49 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence            4699999999763   5677 9999999999999999999999998875443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.43  E-value=1.1e-07  Score=67.19  Aligned_cols=38  Identities=37%  Similarity=1.020  Sum_probs=29.1

Q ss_pred             ccccccccccCCceeecCCCCCcCChhHHHHHHhcC----CCCCcc
Q 016298          148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----INCPMC  189 (392)
Q Consensus       148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCPlC  189 (392)
                      |+||++.|.+   .+.|+ |||.|+..||..|++..    ..||+|
T Consensus         1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999976   66787 99999999999999753    359988

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.31  E-value=4.3e-07  Score=92.79  Aligned_cols=51  Identities=33%  Similarity=0.683  Sum_probs=43.4

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      +.....|+||++.|..   ..+++ |+|.||..||..|+.....||+||..+...
T Consensus        23 Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        23 LDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            3456799999999965   34677 999999999999999888899999988654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.1e-07  Score=77.30  Aligned_cols=52  Identities=33%  Similarity=0.740  Sum_probs=40.5

Q ss_pred             cCCccccccccccc-------------CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQE-------------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~-------------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      .-+.|+||...+.+             ++.......|+|.||..||.+||+++..||||.+....
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~  109 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF  109 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence            45889999877632             23344444699999999999999999999999776543

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.6e-07  Score=74.07  Aligned_cols=50  Identities=36%  Similarity=0.821  Sum_probs=38.0

Q ss_pred             CCccccccccccc---------CCceeecCCCCCcCChhHHHHHHhc---CCCCCccccccc
Q 016298          145 GTECSVCLNEFQE---------DETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRAHIV  194 (392)
Q Consensus       145 ~~~C~ICle~~~~---------~~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~v~  194 (392)
                      ++.|.||.-.|..         ++-..++-.|.|.||..||.+|+..   +..||+||..+.
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            4589999999864         2233344459999999999999974   445999998764

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.8e-06  Score=87.39  Aligned_cols=51  Identities=27%  Similarity=0.841  Sum_probs=40.1

Q ss_pred             cCCcccccccccccCC--------------ceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDE--------------TVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~--------------~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~  195 (392)
                      ...+|+||+.++..-.              .-.++| |.|+||..|+..|+. .+-.||+||.++.+
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3578999999875311              233568 999999999999999 45589999998864

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.07  E-value=2.4e-06  Score=62.43  Aligned_cols=42  Identities=21%  Similarity=0.808  Sum_probs=33.1

Q ss_pred             cccccccccccCCceeecCCCC-----CcCChhHHHHHHhcC--CCCCccc
Q 016298          147 ECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSSH--INCPMCR  190 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR  190 (392)
                      .|.||++ ...++...++| |.     |.+|..|+.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 44445566788 85     899999999999654  4799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.05  E-value=7.5e-07  Score=97.03  Aligned_cols=73  Identities=23%  Similarity=0.618  Sum_probs=51.3

Q ss_pred             CCCHHHHhhcceeEecCCCCcccCCcccccccccccCC---ceeecCCCCCcCChhHHHHHHhc--CCCCCccccccc
Q 016298          122 GLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDE---TVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAHIV  194 (392)
Q Consensus       122 gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~~~---~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~v~  194 (392)
                      +..-++.+.+-.++..-......-.+||||+..+..-+   .-...+.|.|.||..|+-+|+++  +.+||+||..+.
T Consensus      1446 ~~ngs~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1446 KKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hccchHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            44445556666665555555666789999999876322   11122359999999999999985  557999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.01  E-value=3e-06  Score=60.34  Aligned_cols=34  Identities=29%  Similarity=0.816  Sum_probs=21.8

Q ss_pred             ccccccccccCC-ceeecCCCCCcCChhHHHHHHhcC
Q 016298          148 CSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSH  183 (392)
Q Consensus       148 C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~  183 (392)
                      |+||++ |...+ ..++|+ |||.|+.+||++|+...
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence            899999 75544 568899 99999999999999854

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=3.4e-06  Score=81.03  Aligned_cols=51  Identities=33%  Similarity=0.826  Sum_probs=42.1

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHH-HHhcCCC-CCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT-WLSSHIN-CPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~-Wl~~~~t-CPlCR~~v~~~~~  198 (392)
                      .+..|+||++....   ...+| |||+||..||.. |-..+.- ||+||+.+.++..
T Consensus       214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            35689999998765   56677 999999999999 9877766 9999998876643

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.5e-06  Score=82.09  Aligned_cols=53  Identities=28%  Similarity=0.732  Sum_probs=43.5

Q ss_pred             ccCCcccccccccccCC-------ceeecCCCCCcCChhHHHHHH--hcCCCCCcccccccCC
Q 016298          143 IEGTECSVCLNEFQEDE-------TVRLLPKCNHAFHISCIDTWL--SSHINCPMCRAHIVHE  196 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~-------~vr~lp~C~H~FH~~CI~~Wl--~~~~tCPlCR~~v~~~  196 (392)
                      .++..|+||-..+....       ..-.|. |+|+||..||+-|-  ..+++||.|+..+..+
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            35789999999886654       566777 99999999999995  5788999998877544

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.85  E-value=4.5e-06  Score=65.47  Aligned_cols=50  Identities=30%  Similarity=0.782  Sum_probs=23.5

Q ss_pred             CCcccccccccc-cCCc-eeec--CCCCCcCChhHHHHHHhc----C-------CCCCccccccc
Q 016298          145 GTECSVCLNEFQ-EDET-VRLL--PKCNHAFHISCIDTWLSS----H-------INCPMCRAHIV  194 (392)
Q Consensus       145 ~~~C~ICle~~~-~~~~-vr~l--p~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~v~  194 (392)
                      +.+|.||++.+. .++. ..+-  +.|++.||..||.+||..    +       .+||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999999876 3322 2222  269999999999999963    1       14999998874

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=9.9e-06  Score=84.04  Aligned_cols=52  Identities=25%  Similarity=0.593  Sum_probs=40.1

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-----CCCCCcccccccCCCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCRAHIVHETVTA  200 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~v~~~~~~~  200 (392)
                      +..|+|||+....   ...+- |||+||..||-.++..     ...||+||..|...+..+
T Consensus       186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p  242 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP  242 (513)
T ss_pred             CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence            6789999998654   23343 9999999999997753     345999999998765443

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.78  E-value=7.5e-06  Score=81.01  Aligned_cols=50  Identities=28%  Similarity=0.725  Sum_probs=44.0

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      .-..|.||.+-|..   ..++| |+|.||.-||..+|..+..||.|+.++.+..
T Consensus        22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            34689999999976   56788 9999999999999999999999999886654

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.1e-05  Score=75.88  Aligned_cols=44  Identities=39%  Similarity=0.966  Sum_probs=38.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA  191 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~  191 (392)
                      +...|+||++.|...   +++| |+|.||..||..|+.....||.||.
T Consensus        12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence            567999999999886   7888 9999999999999885556999993

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.73  E-value=1.4e-05  Score=81.65  Aligned_cols=52  Identities=37%  Similarity=0.863  Sum_probs=41.2

Q ss_pred             CCcccCCcccccccccccCC-ceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          140 EGLIEGTECSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       140 ~~~~~~~~C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      .+..+-.+|+||||.+.... .++... |.|.||..|+..|.  ..+||+||....
T Consensus       170 ~~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  170 TGLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             CCcccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence            34456789999999997654 345555 99999999999995  678999998665

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.72  E-value=1.3e-05  Score=63.06  Aligned_cols=50  Identities=20%  Similarity=0.431  Sum_probs=38.6

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHETV  198 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~  198 (392)
                      ...|+|+.+-|.+   ..++| +||.|...||..|++. +.+||+|+.++.....
T Consensus         4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            4689999999976   56778 9999999999999998 8889999998876543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.72  E-value=2.4e-05  Score=77.41  Aligned_cols=52  Identities=19%  Similarity=0.492  Sum_probs=38.3

Q ss_pred             CCcccccccccc-cCC-ceeecCCCCCcCChhHHHHHH-hcCCCCCcccccccCCC
Q 016298          145 GTECSVCLNEFQ-EDE-TVRLLPKCNHAFHISCIDTWL-SSHINCPMCRAHIVHET  197 (392)
Q Consensus       145 ~~~C~ICle~~~-~~~-~vr~lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~v~~~~  197 (392)
                      +..|+||..+-. ..+ .+.+.+ |||.||..||+..+ .....||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            468999999632 222 333445 99999999999965 44567999999887654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.64  E-value=1.9e-05  Score=76.74  Aligned_cols=50  Identities=26%  Similarity=0.521  Sum_probs=41.8

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      +..-..|-||-+-|..   ...++ |||.||.-||...|..+..||+||.+..+
T Consensus        22 LDs~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          22 LDSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             chhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            3345789999998865   34556 99999999999999999999999987654

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=2.9e-05  Score=78.10  Aligned_cols=51  Identities=25%  Similarity=0.878  Sum_probs=36.9

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhc---CCCCCcccccccCC
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRAHIVHE  196 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~v~~~  196 (392)
                      ..|.||.+-+.....+.....|||+||..|+..|+..   +.+||+||-.+...
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence            5799995555444445444459999999999999984   35799999544433

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=9.1e-05  Score=74.08  Aligned_cols=49  Identities=35%  Similarity=0.801  Sum_probs=41.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      .+.+|.|||.+-.+   +.+|| |.|. .|..|.+..--+++.||+||+++...
T Consensus       289 ~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  289 SGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            36799999998655   78899 9995 89999999777888999999998653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.32  E-value=4.7e-05  Score=82.09  Aligned_cols=50  Identities=20%  Similarity=0.491  Sum_probs=42.0

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      ...|++|+..+.++......+ |+|+||..||+.|-+.-.+||+||..+..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            357889998887766555555 99999999999999999999999987753

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00011  Score=73.97  Aligned_cols=52  Identities=33%  Similarity=0.924  Sum_probs=40.5

Q ss_pred             cCCcccccccccccCC----ceeecCCCCCcCChhHHHHHHh--c-----CCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDE----TVRLLPKCNHAFHISCIDTWLS--S-----HINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~----~vr~lp~C~H~FH~~CI~~Wl~--~-----~~tCPlCR~~v~~  195 (392)
                      .+.+|.||++...+..    ...+||.|.|.||..||+.|-.  +     ...||.||.....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            4679999999976543    1345677999999999999983  3     4569999987644

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.15  E-value=0.00012  Score=56.33  Aligned_cols=49  Identities=33%  Similarity=0.747  Sum_probs=24.6

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      -..|++|.+.+...  + .+..|.|+|+..||..-+..  -||+|+.+.-..+.
T Consensus         7 lLrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~   55 (65)
T PF14835_consen    7 LLRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDI   55 (65)
T ss_dssp             TTS-SSS-S--SS---B----SSS--B-TTTGGGGTTT--B-SSS--B-S-SS-
T ss_pred             hcCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHH
Confidence            46899999998653  3 33459999999999886553  39999888755543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00029  Score=71.46  Aligned_cols=48  Identities=31%  Similarity=0.954  Sum_probs=36.4

Q ss_pred             CCcccccccccccC-CceeecCCCCCcCChhHHHHHHhc--CCCCCccccc
Q 016298          145 GTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAH  192 (392)
Q Consensus       145 ~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~  192 (392)
                      +.+|+||++.+... +.-.+.+.|+|.|-.+||++||..  ...||+|...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            57899999998753 333344459999999999999952  2349999654

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.09  E-value=0.00019  Score=70.29  Aligned_cols=56  Identities=27%  Similarity=0.726  Sum_probs=45.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-----------------------cCCCCCcccccccCCCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-----------------------SHINCPMCRAHIVHETVTA  200 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-----------------------~~~tCPlCR~~v~~~~~~~  200 (392)
                      ....|.|||--|.+++...+++ |.|.||..|+.++|.                       ....||+||..|..+....
T Consensus       114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~sl  192 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSL  192 (368)
T ss_pred             CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccce
Confidence            4578999999999999888898 999999999987763                       1224999999998765443

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=8.9e-05  Score=73.99  Aligned_cols=50  Identities=28%  Similarity=0.645  Sum_probs=40.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~  196 (392)
                      .+..|+|||+-+..   .+..+.|.|.||.+||..-++ .+++||.||+.+...
T Consensus        42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            46799999999865   445557999999999999886 567899999987543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00044  Score=67.83  Aligned_cols=53  Identities=28%  Similarity=0.467  Sum_probs=41.7

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCCCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHETVTAP  201 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~~~~  201 (392)
                      ..+|+||+....-   ...|+ |+|.||..||+--.. ...+|++||.+|.......+
T Consensus         7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p   60 (324)
T KOG0824|consen    7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP   60 (324)
T ss_pred             CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence            5689999988654   35677 999999999998665 45679999999987654443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00032  Score=52.21  Aligned_cols=46  Identities=33%  Similarity=0.685  Sum_probs=34.4

Q ss_pred             CCcccccccccccCCceeecCCCCCc-CChhHHHH-HHhcCCCCCccccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDT-WLSSHINCPMCRAHIV  194 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~-Wl~~~~tCPlCR~~v~  194 (392)
                      +++|.||+|.-.+  .+ +.. |||. .|.+|-.+ |-..+..||+||+++.
T Consensus         7 ~dECTICye~pvd--sV-lYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVD--SV-LYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcch--HH-HHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            4899999988543  23 333 9996 78888655 5458889999999874

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.65  E-value=0.0011  Score=67.24  Aligned_cols=46  Identities=35%  Similarity=0.929  Sum_probs=38.8

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhc--CCCCCcccccccCC
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAHIVHE  196 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~  196 (392)
                      -|-||-|.   +..+++-| |||..|..|+..|-..  .++||.||..|...
T Consensus       371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            59999876   34588899 9999999999999854  57899999998654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.00091  Score=72.60  Aligned_cols=50  Identities=30%  Similarity=0.681  Sum_probs=39.2

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHETV  198 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~  198 (392)
                      -..|++|-..+.+   +.+. +|+|+||..||.+-+. ++..||.|-+.|...+.
T Consensus       643 ~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             ceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            4689999977654   3334 4999999999999987 56679999988876543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0016  Score=67.04  Aligned_cols=50  Identities=32%  Similarity=0.822  Sum_probs=42.6

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      ...+-+|.||+..+..   ...+| |||.||..||++-+....-||+||..+..
T Consensus        81 ~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             ccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            3457799999988865   55668 99999999999988877789999999876

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.26  E-value=0.0023  Score=65.88  Aligned_cols=51  Identities=27%  Similarity=0.707  Sum_probs=42.3

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      .++..|++|...+.+.-.  ... |||.||..|+..|+..+..||.|+..+...
T Consensus        19 ~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             cccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccchh
Confidence            456899999999987532  234 999999999999999999999998877544

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.22  E-value=0.0013  Score=57.66  Aligned_cols=38  Identities=18%  Similarity=0.583  Sum_probs=31.6

Q ss_pred             CCcccccccccccCCceeecCCCC------CcCChhHHHHHHhcC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCN------HAFHISCIDTWLSSH  183 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~------H~FH~~CI~~Wl~~~  183 (392)
                      ..+|+||++.+...+.++.++ |+      |.||.+|+++|-+.+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~   69 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER   69 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence            468999999998866777787 76      999999999995433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.10  E-value=0.0018  Score=65.66  Aligned_cols=46  Identities=33%  Similarity=0.824  Sum_probs=38.7

Q ss_pred             CCcccccccccccC-CceeecCCCCCcCChhHHHHHHhcCC--CCCcccc
Q 016298          145 GTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSSHI--NCPMCRA  191 (392)
Q Consensus       145 ~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~  191 (392)
                      +..|..|-+.+-.. +.+..|| |.|+||..|+.+.|.++.  +||-||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            46799999988653 4678899 999999999999998665  5999994

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.005  Score=58.32  Aligned_cols=51  Identities=27%  Similarity=0.737  Sum_probs=43.7

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--------CCCCCcccccccCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--------HINCPMCRAHIVHET  197 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~v~~~~  197 (392)
                      ...|..|--.+..+|.+|+.  |-|.||.+|+++|-..        ...||.|-.+|+++.
T Consensus        50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            56899999999999999875  9999999999999753        224999999998764

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.002  Score=58.15  Aligned_cols=29  Identities=31%  Similarity=0.840  Sum_probs=26.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCCh
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHI  173 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~  173 (392)
                      ...+|.||||++..++.+..|| |-.+||+
T Consensus       176 dkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  176 DKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            4568999999999999999999 9999996

>PHA02862 5L protein; Provisional

Probab=95.71  E-value=0.0055  Score=54.38  Aligned_cols=51  Identities=20%  Similarity=0.566  Sum_probs=37.9

Q ss_pred             CCcccccccccccCCceeecCCCC-----CcCChhHHHHHHhc--CCCCCcccccccCCCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSS--HINCPMCRAHIVHETVTA  200 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~~~~  200 (392)
                      ++.|-||+++-.+  .  .-| |.     ..-|.+|+.+|+..  +..|++|+.++..+....
T Consensus         2 ~diCWIC~~~~~e--~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yK   59 (156)
T PHA02862          2 SDICWICNDVCDE--R--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYV   59 (156)
T ss_pred             CCEEEEecCcCCC--C--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccc
Confidence            4689999998533  2  356 65     57999999999974  446999999987655443

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.63  E-value=0.0075  Score=45.48  Aligned_cols=42  Identities=24%  Similarity=0.634  Sum_probs=27.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPM  188 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPl  188 (392)
                      -...|+|.+..|+++  ++-.. |+|.|-.+.|..||+.+  ..||+
T Consensus        10 ~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence            357899999999763  55555 99999999999999543  34998

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.46  E-value=0.0081  Score=43.48  Aligned_cols=40  Identities=35%  Similarity=0.987  Sum_probs=27.2

Q ss_pred             ccccccccccCCceeecCCCC-----CcCChhHHHHHHhc--CCCCCcc
Q 016298          148 CSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSS--HINCPMC  189 (392)
Q Consensus       148 C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlC  189 (392)
                      |-||++.-...+ ..+.| |.     -..|..|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999876655 44567 75     36899999999974  4569887

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.43  E-value=0.0086  Score=68.69  Aligned_cols=69  Identities=25%  Similarity=0.546  Sum_probs=47.5

Q ss_pred             HHhhcceeEecCC-CCcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC----------CCCCcccccccC
Q 016298          127 VINSITVCRYKKG-EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----------INCPMCRAHIVH  195 (392)
Q Consensus       127 ~i~~lp~~~~~~~-~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----------~tCPlCR~~v~~  195 (392)
                      .-.-||-..-++. .....++.|.||+-+--.......|. |+|+||..|...-|++.          -.||+|..+|.+
T Consensus      3467 EE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3467 EEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            3445666554432 23345789999998755555566676 99999999998766532          249999998865


Q ss_pred             C
Q 016298          196 E  196 (392)
Q Consensus       196 ~  196 (392)
                      -
T Consensus      3546 ~ 3546 (3738)
T KOG1428|consen 3546 I 3546 (3738)
T ss_pred             H
Confidence            3

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.97  E-value=0.0091  Score=49.30  Aligned_cols=32  Identities=41%  Similarity=0.889  Sum_probs=27.3

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHH
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCID  177 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~  177 (392)
                      ++..|++|-..+.. ....+.| |||+||..|++
T Consensus        77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            46789999999977 5667788 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.96  E-value=0.0061  Score=60.66  Aligned_cols=50  Identities=28%  Similarity=0.614  Sum_probs=42.2

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      ...+|.+|-.-|.+...+.   .|-|.||..||.+.|....+||.|...+...
T Consensus        14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            4679999999988765443   4999999999999999999999998877544

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.72  E-value=0.025  Score=51.09  Aligned_cols=49  Identities=20%  Similarity=0.623  Sum_probs=36.5

Q ss_pred             cCCcccccccccccCCceeecCCCCC-----cCChhHHHHHHhcC--CCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNH-----AFHISCIDTWLSSH--INCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H-----~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~  197 (392)
                      .+..|-||.++-..  .  ..| |..     ..|.+|+.+|+...  ..|++|+.++....
T Consensus         7 ~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~   62 (162)
T PHA02825          7 MDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK   62 (162)
T ss_pred             CCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence            46799999988432  2  246 654     56999999999754  45999999886653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.39  E-value=0.017  Score=60.70  Aligned_cols=51  Identities=22%  Similarity=0.628  Sum_probs=39.1

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-----cCCCCCcccccccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-----SHINCPMCRAHIVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~v~~~  196 (392)
                      ..+..+|.+|-+.-++   ..... |.|.||..||..+..     .+.+||.|...+..+
T Consensus       533 nk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             ccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            3456799999988654   44454 999999999999875     356799998777554

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=0.042  Score=53.64  Aligned_cols=48  Identities=27%  Similarity=0.535  Sum_probs=36.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--CCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~v~  194 (392)
                      .+.+|++|-+.=..+  -...+ |+|+||.-||..=+..  .-+||.|-.++.
T Consensus       238 ~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            568999999875443  34455 9999999999987654  468999977665

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.22  E-value=0.036  Score=40.44  Aligned_cols=45  Identities=24%  Similarity=0.543  Sum_probs=21.7

Q ss_pred             ccccccccccCC-ceeecCCCCCcCChhHHHHHHh-cCCCCCcccccc
Q 016298          148 CSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHI  193 (392)
Q Consensus       148 C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v  193 (392)
                      |++|.+++...+ ...--+ |++..+..|...-+. ....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994433 333333 788888899887775 467799999875

>PHA03096 p28-like protein; Provisional

Probab=94.13  E-value=0.023  Score=56.19  Aligned_cols=46  Identities=26%  Similarity=0.630  Sum_probs=33.2

Q ss_pred             CcccccccccccCC----ceeecCCCCCcCChhHHHHHHhc---CCCCCcccc
Q 016298          146 TECSVCLNEFQEDE----TVRLLPKCNHAFHISCIDTWLSS---HINCPMCRA  191 (392)
Q Consensus       146 ~~C~ICle~~~~~~----~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~  191 (392)
                      -.|.||++......    .-.+|+.|.|.||..||..|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            57999999976532    33467789999999999999853   233544443

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.04  Score=53.02  Aligned_cols=54  Identities=11%  Similarity=0.306  Sum_probs=47.2

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT  199 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  199 (392)
                      -.|+||.+.+.+.....+|..|||+|+.+|+++.+.....||+|-.++...+..
T Consensus       222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence            469999999998877777767999999999999999999999999888776543

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.05  E-value=0.023  Score=62.56  Aligned_cols=49  Identities=31%  Similarity=0.788  Sum_probs=36.5

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-------CCCCCcccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-------HINCPMCRAHI  193 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~v  193 (392)
                      ..+|.||++.+.....+---..|-|+||..||.+|.++       .-.||-|+...
T Consensus       191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            45899999999776544333348899999999999863       12499998443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.02  E-value=0.023  Score=53.05  Aligned_cols=45  Identities=18%  Similarity=0.480  Sum_probs=37.7

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI  193 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v  193 (392)
                      .-.|.||-.+|..   .++.. |||.||..|..+-++....|-+|....
T Consensus       196 PF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence            3479999999976   34454 999999999999999999999997654

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.024  Score=58.00  Aligned_cols=46  Identities=26%  Similarity=0.761  Sum_probs=37.7

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--------CCCCCcccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--------HINCPMCRA  191 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~  191 (392)
                      --.|.||+++.........+| |+|+||..|+..++..        .-.||-+.-
T Consensus       184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            358999999987778899999 9999999999999853        224877754

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.61  E-value=0.055  Score=54.60  Aligned_cols=44  Identities=32%  Similarity=0.714  Sum_probs=32.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ..+.|.||+++..+   ...+| |||.-|  |..-- +....||+||..+.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            35789999999766   67788 999966  65543 34445999998764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.53  E-value=0.042  Score=54.13  Aligned_cols=46  Identities=20%  Similarity=0.405  Sum_probs=38.3

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ...|-||...|..+   ++.. |+|.||..|...-++....|++|-+.+.
T Consensus       241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceecccccc
Confidence            35699999999873   3444 9999999999998999899999977654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.39  E-value=0.1  Score=51.57  Aligned_cols=52  Identities=31%  Similarity=0.730  Sum_probs=38.3

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcc-cccccCCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMC-RAHIVHETVT  199 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlC-R~~v~~~~~~  199 (392)
                      ...|+.|-.-+...  ++ +|.|+|.||.+||..-|. ....||.| |+.+..+...
T Consensus       274 ~LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~  327 (427)
T COG5222         274 SLKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLT  327 (427)
T ss_pred             cccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCcccccchhhccC
Confidence            37899998776553  33 366999999999998765 66779999 5566555443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=92.08  E-value=0.23  Score=49.74  Aligned_cols=47  Identities=21%  Similarity=0.482  Sum_probs=37.1

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI  193 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v  193 (392)
                      ....|+||+....++..+.+   -|-+||..||-..+..++.||+=..+.
T Consensus       299 ~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            35789999999876533322   699999999999999999999865443

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.93  E-value=0.16  Score=51.23  Aligned_cols=49  Identities=22%  Similarity=0.575  Sum_probs=41.6

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      .++..|+||...-   ......| |+|.=|..||.+-|...+.|=.|++.+..
T Consensus       420 sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            4688999998653   3456788 99999999999999999999999888764

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.26  E-value=0.1  Score=37.10  Aligned_cols=41  Identities=22%  Similarity=0.668  Sum_probs=22.9

Q ss_pred             ccccccccccCCceeecCCCCCcCChhHHHHHHhcCC--CCCcc
Q 016298          148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI--NCPMC  189 (392)
Q Consensus       148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCPlC  189 (392)
                      |.+|.+....|..-.-. .|+=.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            66777776665433222 3888999999999998665  69987

; PDB: 3NW0_A 2CT0_A.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.20  E-value=0.019  Score=58.27  Aligned_cols=52  Identities=19%  Similarity=0.616  Sum_probs=44.0

Q ss_pred             CCcccccccccccC-CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          145 GTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       145 ~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      ...|+||.+.|... +.+..+- |||++|.+||.+||....-||.||+.+....
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            45799999998765 5566665 9999999999999999888999999886544

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.00  E-value=0.074  Score=51.02  Aligned_cols=47  Identities=23%  Similarity=0.578  Sum_probs=33.3

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      .|-.|.-- ..++...++. |+|+||..|...-.  ...||+|+..+....
T Consensus         5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~   51 (233)
T KOG4739|consen    5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQ   51 (233)
T ss_pred             Eecccccc-CCCCceeeee-chhhhhhhhcccCC--ccccccccceeeeee
Confidence            46656543 3366777776 99999999977632  228999999875543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.66  E-value=0.21  Score=50.36  Aligned_cols=52  Identities=23%  Similarity=0.520  Sum_probs=40.2

Q ss_pred             CCCcccCCcccccccccccCCceeecCCCCCcCChhHHHH--HHhcCCCCCccccccc
Q 016298          139 GEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT--WLSSHINCPMCRAHIV  194 (392)
Q Consensus       139 ~~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~--Wl~~~~tCPlCR~~v~  194 (392)
                      ++...+...|.||-+.+.-   +.++| |+|..|-.|--+  -|.....||+||+...
T Consensus        55 ddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          55 DDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            3444456789999988653   67889 999999999765  3567888999998653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.62  E-value=0.16  Score=49.83  Aligned_cols=47  Identities=30%  Similarity=0.843  Sum_probs=38.6

Q ss_pred             CcccccccccccCC---ceeecCCCCCcCChhHHHHHHhcC-CCCCcccccc
Q 016298          146 TECSVCLNEFQEDE---TVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHI  193 (392)
Q Consensus       146 ~~C~ICle~~~~~~---~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v  193 (392)
                      ..|-||-++|...+   ..+.|. |||.|+..|+.+-+... ..||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            57999999998764   456776 99999999999877643 4599999985

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=90.60  E-value=0.15  Score=38.19  Aligned_cols=45  Identities=22%  Similarity=0.550  Sum_probs=32.1

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      ..|-.|...   +..-.++| |+|+.+..|.+-  .+-+.||.|.+++...
T Consensus         8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccCC
Confidence            345555433   33456788 999999999776  4667799999888654

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=90.49  E-value=0.19  Score=51.22  Aligned_cols=56  Identities=23%  Similarity=0.558  Sum_probs=34.7

Q ss_pred             cccCCcccccccccccCC-------------ceeecCC-----CCCcCChhHHHHHHhc-------------CCCCCccc
Q 016298          142 LIEGTECSVCLNEFQEDE-------------TVRLLPK-----CNHAFHISCIDTWLSS-------------HINCPMCR  190 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~-------------~vr~lp~-----C~H~FH~~CI~~Wl~~-------------~~tCPlCR  190 (392)
                      ..+.+.|--|+..-.+-.             .....+.     |.-.+|.+|+-+|+.+             +.+||.||
T Consensus       268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR  347 (358)
T PF10272_consen  268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR  347 (358)
T ss_pred             ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence            346788999998643210             0111111     3345688999999853             23599999


Q ss_pred             ccccCCC
Q 016298          191 AHIVHET  197 (392)
Q Consensus       191 ~~v~~~~  197 (392)
                      +.+...+
T Consensus       348 a~FCilD  354 (358)
T PF10272_consen  348 AKFCILD  354 (358)
T ss_pred             ccceeee
Confidence            9876543

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.27  E-value=0.06  Score=53.01  Aligned_cols=42  Identities=29%  Similarity=0.732  Sum_probs=31.0

Q ss_pred             CCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ..-|+||++.-.+   ...|+ |||. -|..|-..    -+.||+||+.|.
T Consensus       300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence            4579999987543   67888 9995 56677544    237999998764

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=90.07  E-value=0.16  Score=49.99  Aligned_cols=46  Identities=22%  Similarity=0.634  Sum_probs=38.3

Q ss_pred             CCcccccccccccCC-ceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298          145 GTECSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSHINCPMCRA  191 (392)
Q Consensus       145 ~~~C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~  191 (392)
                      ...|+||.+.+.... .+..++ |+|.-|..|+......+-+||+|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            345999999976654 466777 9999999999998877789999987

>PF04641 Rtf2: Rtf2 RING-finger

Probab=89.96  E-value=0.27  Score=47.83  Aligned_cols=53  Identities=23%  Similarity=0.492  Sum_probs=41.0

Q ss_pred             cCCcccccccccccCCce-eecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETV-RLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~v-r~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      ..-.|+|...+|...... .+.| |||+|...+|+.- .....||+|-.++...+.
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~-cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRP-CGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcC-CCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence            456899999999655444 4446 9999999999996 235679999998876543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.41  E-value=0.23  Score=45.78  Aligned_cols=31  Identities=32%  Similarity=0.889  Sum_probs=24.6

Q ss_pred             CCCCcCChhHHHHHHhcC-----------CCCCcccccccCC
Q 016298          166 KCNHAFHISCIDTWLSSH-----------INCPMCRAHIVHE  196 (392)
Q Consensus       166 ~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~v~~~  196 (392)
                      .|+.-||.-|+..||+.-           ..||.|-.++..+
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            499999999999999731           2499998877543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=89.39  E-value=0.38  Score=35.96  Aligned_cols=35  Identities=29%  Similarity=0.881  Sum_probs=30.4

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHH
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT  178 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~  178 (392)
                      ....|.+|-+.|.+++.+.+-|.|+-.+|.+|.+.
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            35689999999998888888899999999999544

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=87.75  E-value=0.2  Score=55.17  Aligned_cols=48  Identities=21%  Similarity=0.692  Sum_probs=37.4

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCcccccccCCCC
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIVHETV  198 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~~  198 (392)
                      ..|.||++    .+...+.+ |+|.||.+|+..-+...  .-||+||..+.....
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l  504 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL  504 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence            68999999    34466666 99999999999877532  249999998876543

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=87.65  E-value=0.35  Score=48.66  Aligned_cols=53  Identities=21%  Similarity=0.481  Sum_probs=37.9

Q ss_pred             cCCcccccccccccCCc-eeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~  197 (392)
                      +++.|+.|+|++...++ ..-.| ||...|.-|...--+ -+..||-||+....+.
T Consensus        13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            56789999999987664 33445 887777777554332 3667999999887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.01  E-value=0.27  Score=54.55  Aligned_cols=41  Identities=24%  Similarity=0.714  Sum_probs=31.7

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA  191 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~  191 (392)
                      ...|..|--.++.+  .+..- |+|.||.+|+.   .....||-|+.
T Consensus       840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccch
Confidence            35899999888654  33333 99999999998   45556999977

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=86.62  E-value=0.27  Score=48.96  Aligned_cols=42  Identities=29%  Similarity=0.750  Sum_probs=29.4

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI  193 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v  193 (392)
                      .|--|--.+.  .--|+.| |+|+||.+|...  ...+.||+|-..|
T Consensus        92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            4666644432  3467889 999999999654  4466899996544

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.27  E-value=0.36  Score=53.92  Aligned_cols=35  Identities=23%  Similarity=0.614  Sum_probs=28.3

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHH
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL  180 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl  180 (392)
                      .++.|.+|.-.+... .-.+.| |||.||.+||.+-.
T Consensus       816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            468999999888664 455677 99999999998764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=84.25  E-value=0.58  Score=51.47  Aligned_cols=25  Identities=32%  Similarity=0.711  Sum_probs=22.0

Q ss_pred             ecCCCCCcCChhHHHHHHhcCCCCCc
Q 016298          163 LLPKCNHAFHISCIDTWLSSHINCPM  188 (392)
Q Consensus       163 ~lp~C~H~FH~~CI~~Wl~~~~tCPl  188 (392)
                      ... |+|+.|..|...|+.....||.
T Consensus      1045 Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hcc-ccccccHHHHHHHHhcCCcCCC
Confidence            344 9999999999999999999984

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=83.98  E-value=0.9  Score=41.20  Aligned_cols=57  Identities=25%  Similarity=0.642  Sum_probs=36.5

Q ss_pred             cCCcccccccccccCCcee---------ecCCCCC-cCChhHHHHHHhc-------------------------------
Q 016298          144 EGTECSVCLNEFQEDETVR---------LLPKCNH-AFHISCIDTWLSS-------------------------------  182 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr---------~lp~C~H-~FH~~CI~~Wl~~-------------------------------  182 (392)
                      ++..|+||||--.+...+.         -.= |+- .=|..||+++-+.                               
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP   79 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence            3578999999855432111         111 442 3578999998641                               


Q ss_pred             CCCCCcccccccCCCCCCC
Q 016298          183 HINCPMCRAHIVHETVTAP  201 (392)
Q Consensus       183 ~~tCPlCR~~v~~~~~~~~  201 (392)
                      +..||+||..|.......+
T Consensus        80 ~L~CPLCRG~V~GWtvve~   98 (162)
T PF07800_consen   80 ELACPLCRGEVKGWTVVEP   98 (162)
T ss_pred             cccCccccCceeceEEchH
Confidence            1249999999988765543

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=83.02  E-value=0.41  Score=55.38  Aligned_cols=45  Identities=24%  Similarity=0.736  Sum_probs=37.3

Q ss_pred             CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298          146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI  193 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v  193 (392)
                      ..|.||++.+.....+.   .|+|.+|..|+..|+..+..||.|....
T Consensus      1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence            47999999987533332   3999999999999999999999998543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.77  E-value=1  Score=48.34  Aligned_cols=48  Identities=27%  Similarity=0.852  Sum_probs=40.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT  199 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  199 (392)
                      ..+.|.||++++    ..+..+ |.   |..|+.+|+..+..||+|+..+..+...
T Consensus       478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~  525 (543)
T KOG0802|consen  478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL  525 (543)
T ss_pred             ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence            367999999998    466666 88   9999999999999999999988776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		6e-13
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		9e-09
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		3e-08
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		6e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-04
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		5e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		6e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
           +G EC+VCL E ++ E  R LP+C H FH  C+D WL SH  CP+CR  +V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE-TVTAPLA 203
           G EC VC  ++   E+VR LP CNH FH SCI  WL  H +CP+CR  +  + T T P  
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPG 73
Query: 204 TTA 206
            T 
Sbjct: 74  LTG 76

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 135 RYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191
           R+       E T C VC+ +F+  + +R+LP CNH FH  C+D WL ++  CP+CRA
Sbjct: 13  RFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
           +C++CL+  +E E VR LP C H FH  C+D WL ++  CP+CR  I
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195
           C+VCL +F+  + + + P C HAFH  C+  WL     CP+C   ++ 
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
           C +C +E+ + +    LP C+H FH  C+  WL     CP+CR
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAP 201
           L +  EC +C+     D    L+  C H+F   CID W   H NCP+CR  +        
Sbjct: 12  LTDEEECCICM-----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM-------- 58
Query: 202 LATTANQNSDSSS 214
             T AN++S  SS
Sbjct: 59  --TGANESSGPSS 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	9e-31
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	7e-29
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	4e-23
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-22
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-21
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-19
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	7e-18
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-16
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	8e-14
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	4e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	5e-12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	9e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	8e-11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	5e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	4e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	8e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	5e-06
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	3e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	5e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	8e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  111 bits (280), Expect = 9e-31
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 125 QSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI 184
                 +   R+       E T C VC+ +F+  + +R+LP CNH FH  C+D WL ++ 
Sbjct: 3   SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANR 61

Query: 185 NCPMCRAHI 193
            CP+CRA  
Sbjct: 62  TCPICRADS 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  105 bits (265), Expect = 7e-29
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
            + +G EC+VCL E ++ E  R LP+C H FH  C+D WL SH  CP+CR  +V
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 90.9 bits (226), Expect = 4e-23
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 135 RYKKGEGLIEGT--ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAH 192
           +    EG  E T  +C++CL+  +E E VR LP C H FH  C+D WL ++  CP+CR  
Sbjct: 2   KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVD 60

Query: 193 I 193
           I
Sbjct: 61  I 61

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 88.9 bits (221), Expect = 3e-22
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 120 TVGLQQSVINSITVCRYKKGEGLI-EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178
                +  I+++      +  G + +   C +C +E+ + +    LP C+H FH  C+  
Sbjct: 14  NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSI 72

Query: 179 WLSSHINCPMCRA 191
           WL     CP+CR 
Sbjct: 73  WLQKSGTCPVCRC 85

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 140 EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV-HETV 198
           E +  G EC VC  ++   E+VR LP CNH FH SCI  WL  H +CP+CR  +    T 
Sbjct: 10  EHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68

Query: 199 TAPLATT 205
           T P   T
Sbjct: 69  TNPPGLT 75

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 138 KGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
           K + L     C+VCL +F+  + + + P C HAFH  C+  WL     CP+C   ++
Sbjct: 8   KVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 76.9 bits (189), Expect = 7e-18
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
           C  C  E ++++ V +  +CNH+FH  C+  W+  +  CP+C+   V
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
           + C +CL +      V  +  C H  H +C +  L     CP+C    
Sbjct: 6   SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 137 KKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
            + + L +  EC +C+    +     +LP C H+F   CID W   H NCP+CR  +
Sbjct: 7   GRVKQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 64.7 bits (158), Expect = 8e-14
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
               C +CL +         LP C HAF   CI  W+  +  CP+C+  +
Sbjct: 4   VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 64.1 bits (155), Expect = 4e-13
 Identities = 16/58 (27%), Positives = 21/58 (36%)

Query: 133 VCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
            C   +   +    EC         +E       CNHAFH  CI  WL +   CP+  
Sbjct: 39  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 60.3 bits (146), Expect = 3e-12
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 146 TECSVCLNEFQEDETVRLLP---KCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
             C +C++ + E      L    +C H F   C+   L +   CP CR  I H+
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 16/58 (27%), Positives = 21/58 (36%)

Query: 133 VCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
            C   +   +    EC         +E       CNHAFH  CI  WL +   CP+  
Sbjct: 50  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 59.0 bits (143), Expect = 9e-12
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 144 EGTECSVCLNEFQEDETVRLLP---KCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198
               C +C++ + E      L    +C H F   C+   L +   CP CR  I H+  
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 56.8 bits (137), Expect = 8e-11
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 147 ECSVCLNEFQEDETVRLLP---KCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198
            C +C++ + E      L    +C H F   C+   L +   CP CR  I H+  
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 136 YKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHI 193
            +  E + E   C +C+ + ++    RL P C+     SCI  WL+     CP CRA +
Sbjct: 13  EQSVESIAEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
            CS+C     +  T   + +C H F  SCI         CP C   +
Sbjct: 17  LCSICKGYLIDATT---ITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN--CPMCRAHIVHETVTAP 201
            C++C +   + ++      C    H+ C+  +  S+    CP C  +  HE   + 
Sbjct: 17  ICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 49.8 bits (118), Expect = 5e-08
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 19/74 (25%)

Query: 147 ECSVCLNEFQE--------------DETVRLLPKCNHAFHISCIDTWLSS-----HINCP 187
           +C +C+ +                    V  L KC+HAFH+ C+     +      + CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 188 MCRAHIVHETVTAP 201
            C+     +T T P
Sbjct: 87  SCKTIYGEKTGTQP 100

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAP 201
           EC++CL        V L   C H F   C+         C +CR  I  + + + 
Sbjct: 17  ECAICLQTCVH--PVSL--PCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 15/67 (22%)

Query: 144 EGTECSVCLNEFQEDETVRLL----PKCNHAFHISCIDTWLSS-----------HINCPM 188
           E   C++C     +   V L+     KC    H  C++ W  +              CP 
Sbjct: 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 189 CRAHIVH 195
           C+A +  
Sbjct: 367 CKAKLST 373

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
            C +C   F +  T   + +C H+F  +CI  +L +   CP+C   +
Sbjct: 17  MCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPICDVQV 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191
            C +C   FQ      ++ KC H F  SC      +   C +C  
Sbjct: 17  RCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQ 57

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHIVHETV 198
               C +C    ++   V++ P C H    SC+ +W  S    CP CR  I     
Sbjct: 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.1 bits (111), Expect = 8e-07
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 147 ECSVCLNEFQEDETVRLLP---KCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
            C +C++ + E      L    +C H F   C+   L +   CP CR  I H+
Sbjct: 9   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 146 TECSVCLNEFQEDETVRLLP---KCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198
             C +C++ + E      L    +C H F   C+   L +   CP CR  I H+  
Sbjct: 73  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
           C +C   F       ++P+C+H +   CI  +LS    CP C   +
Sbjct: 25  CGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTA 206
           +C +C   F E      L  C H+F   CI+ W+   I CP+CR  I  +T +  L    
Sbjct: 66  QCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 121

Query: 207 NQ 208
           N+
Sbjct: 122 NK 123

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 139 GEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS---HINCPMCR 190
            + L E  EC +C+  F E++    L  C H     C++  L+S    + CP C 
Sbjct: 9   LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 9/51 (17%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN--------CPMC 189
            C +CL E+  ++   +  +C   F   C+  ++   I         CP  
Sbjct: 7   GCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL--SSHINCPMCRAHIV 194
           C +C +   +     ++P C +++   CI T L  S    CP C  + V
Sbjct: 18  CLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 92  GHQQAQSDGEDEDFVDENRIDHPIWLIHTVGLQQSVINSITVCRYKKGEGLIEGTECSVC 151
           G +      +    + E++ +  +W      L+    +      +     + E  +C  C
Sbjct: 1   GSEPYSLTAQQSSLIREDKSNAKLWNEVLASLKDRPASGSPFQLFL--SKVEETFQCICC 58

Query: 152 LNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHI 193
                   T      C H     C+D    + +  CP CR  +
Sbjct: 59  QELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDL 97

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191
           CS C N  +E      L  C H F  +C+   + +   CP+C  
Sbjct: 25  CSRCTNILREPVC---LGGCEHIFCSNCVSDCIGT--GCPVCYT 63

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN--CPMCRAHIVHE 196
            C++C +   + ++      C    H+ C+  +  S+    CP C  +  HE
Sbjct: 182 ICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL--SSHINCPMCRAHIV 194
           C +C +   +     ++P C +++   CI T L  S    CP C  + V
Sbjct: 16  CLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHETV 198
           +C  C              +C H F  SC+   LSS    C  C+  IV + V
Sbjct: 17  KCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHETV 198
           +  EC +C+   + D+       C +     C     +  +  CP CR     +  
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCI-DTWLSSHINCPMCRAHIVHETVTAPL 202
           +C +C+    E  T   LP CNH     C   T   + + CP CR  +   T     
Sbjct: 17  QCGICMEILVEPVT---LP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTR 69

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
            C  C  E +     +LLP C H     C++   +S + CP+C+A  
Sbjct: 8   RCQQCQAEAKC---PKLLP-CLHTLCSGCLE---ASGMQCPICQAPW 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.62
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.6
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.44
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.44
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.43
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.39
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.36
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.35
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.29
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.29
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.29
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.28
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.24
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.2
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.2
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.19
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.16
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.12
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.11
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.1
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.1
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.07
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.05
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.03
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.01
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.01
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.99
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.96
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.94
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.94
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.93
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.92
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.92
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.91
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.9
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.87
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.82
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.81
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.8
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.79
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.78
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.75
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.73
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.69
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.68
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.67
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.66
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.65
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.61
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.61
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.6
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.52
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.49
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.44
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.36
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.36
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.33
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.28
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.25
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.06
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.0
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.71
3nw0_A	238	Non-structural maintenance of chromosomes element	97.51
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	92.66
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.29
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.59
2k1a_A	42	Integrin alpha-IIB; single-PASS transmembrane segm	90.68
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	90.6
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	90.46
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	84.42
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	80.57

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.62  E-value=2.7e-16  Score=127.27  Aligned_cols=76  Identities=24%  Similarity=0.612  Sum_probs=67.5

Q ss_pred             hccCCCHHHHhhcceeEecCCCC-cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          119 HTVGLQQSVINSITVCRYKKGEG-LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       119 ~~~gl~~~~i~~lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      ...|++++.|+.||.+.+..... ..++..|+||++.|..++.++.+| |+|.||..||..|++.+.+||+||..+..
T Consensus        13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            45799999999999999887543 345678999999999999999999 99999999999999999999999998854

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-16  Score=123.84  Aligned_cols=69  Identities=35%  Similarity=0.832  Sum_probs=61.2

Q ss_pred             HHhhcceeEecCCCCcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       127 ~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      .++.||.++++......+...|+||++.|..++.++.+| |+|.||..||..|++.+.+||+||+.+...
T Consensus         5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            356788888887766667889999999999999999999 999999999999999999999999988653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.47  E-value=2.3e-14  Score=104.38  Aligned_cols=51  Identities=51%  Similarity=1.285  Sum_probs=46.7

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            467999999999998888888779999999999999999999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.8e-14  Score=108.05  Aligned_cols=54  Identities=33%  Similarity=0.864  Sum_probs=48.8

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      ..++..|+||++.|..++.++++| |+|.||..||.+|++.+.+||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            345679999999999988899999 999999999999999999999999998654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=8e-14  Score=108.75  Aligned_cols=56  Identities=45%  Similarity=0.980  Sum_probs=50.1

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT  199 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  199 (392)
                      .+...|+||++.|..++.++.++ |+|.||..||.+|++.+.+||+||..+......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence            35689999999999888888999 999999999999999999999999998776443

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=105.67  Aligned_cols=53  Identities=42%  Similarity=0.988  Sum_probs=48.1

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      .....|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||..+...
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            34678999999998888899999 999999999999999999999999998654

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1e-13  Score=109.77  Aligned_cols=53  Identities=28%  Similarity=0.831  Sum_probs=43.5

Q ss_pred             cCCccccccccccc-----------CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQE-----------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~-----------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      +++.|+||+++|..           ++.++.++.|+|.||..||++||+.+.+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            46778888888854           444666656999999999999999999999999987643

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.36  E-value=4.1e-13  Score=112.08  Aligned_cols=56  Identities=27%  Similarity=0.663  Sum_probs=44.8

Q ss_pred             cCCcccccccccccCC---------------ceeecCCCCCcCChhHHHHHHh-----cCCCCCcccccccCCCCCC
Q 016298          144 EGTECSVCLNEFQEDE---------------TVRLLPKCNHAFHISCIDTWLS-----SHINCPMCRAHIVHETVTA  200 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~v~~~~~~~  200 (392)
                      .+..|+||++.|..+.               .+++++ |+|.||..||..|+.     .+.+||+||+.+.......
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q   99 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ   99 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence            3568999999997643               344777 999999999999994     5678999999987664433

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.35  E-value=4.9e-13  Score=97.15  Aligned_cols=50  Identities=26%  Similarity=0.785  Sum_probs=43.7

Q ss_pred             cCCcccccccccccC-CceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ....|+||++.|..+ +.++.++ |+|.||..||.+|++.+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            467899999999654 4577888 9999999999999999999999998864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.4e-12  Score=98.63  Aligned_cols=52  Identities=27%  Similarity=0.680  Sum_probs=44.5

Q ss_pred             ccCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          143 IEGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      .+...|+||++.|.+.    ..+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            3567999999999763    3457788 99999999999999999999999998753

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.29  E-value=1.1e-12  Score=100.07  Aligned_cols=54  Identities=26%  Similarity=0.665  Sum_probs=46.2

Q ss_pred             cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      ++..|+||++.|.+.    +.++.++ |||.||..||.+|++.+.+||+||..+.....
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            467899999998763    4557788 99999999999999999999999999876543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.1e-12  Score=102.54  Aligned_cols=56  Identities=25%  Similarity=0.702  Sum_probs=46.9

Q ss_pred             cCCcccccccccccCCceeecCCCC-----CcCChhHHHHHHhcC--CCCCcccccccCCCCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSSH--INCPMCRAHIVHETVTAP  201 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~~~~~  201 (392)
                      ++..|.||+++|..++.+ ++| |+     |.||..||++||..+  .+||+||..+.......|
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P   76 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG   76 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred             CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence            467999999999877766 688 96     999999999999865  489999999987655444

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.28  E-value=1.3e-12  Score=109.11  Aligned_cols=51  Identities=33%  Similarity=0.677  Sum_probs=43.7

Q ss_pred             cCCcccccccccccCC---------------ceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDE---------------TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      +++.|+||++.|...-               .++.++ |+|.||..||++||..+.+||+||+.+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            4689999999998541               356677 99999999999999999999999998643

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.24  E-value=1.9e-12  Score=96.45  Aligned_cols=53  Identities=26%  Similarity=0.674  Sum_probs=45.2

Q ss_pred             cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      ++..|+||++.|...    +.+..++ |||.||..||.+|++.+.+||+||..+....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            356899999999753    4457787 9999999999999999999999999987653

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=95.58  Aligned_cols=55  Identities=24%  Similarity=0.473  Sum_probs=45.4

Q ss_pred             CcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       141 ~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      ...+...|+||++.|.+  .+.+++ |+|.||..||..|++.+.+||+||..+.....
T Consensus        11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A           11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred             hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence            34456799999999976  344447 99999999999999999999999999876543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=3.6e-12  Score=97.26  Aligned_cols=51  Identities=37%  Similarity=0.995  Sum_probs=44.3

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      ..+...|+||++.+.+    ..+| |+|.||..||..|+..+.+||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            3456899999999876    6678 9999999999999999999999999987543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=2e-11  Score=96.66  Aligned_cols=55  Identities=31%  Similarity=0.758  Sum_probs=46.6

Q ss_pred             cccCCcccccccccccCCc-eeecCCCCCcCChhHHHHHHhcC---CCCCcccccccCCC
Q 016298          142 LIEGTECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLSSH---INCPMCRAHIVHET  197 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~  197 (392)
                      ..+...|+||++.|...+. .+.++ |||.||..||..|+..+   .+||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            3456799999999987664 77888 99999999999999876   78999999886653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.20  E-value=1.1e-11  Score=93.81  Aligned_cols=49  Identities=31%  Similarity=0.847  Sum_probs=42.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      .+..|+||++.+.+  .++.+| |+|.||..||..|++.+.+||+||..+..
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            46789999999864  357788 99999999999999999999999998853

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=3.4e-12  Score=98.00  Aligned_cols=52  Identities=27%  Similarity=0.613  Sum_probs=44.4

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      .+...|+||++.|.+   ...++ |+|.||..||..|+..+.+||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   64 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFL   64 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred             CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence            346789999999865   46678 99999999999999999999999999876543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.16  E-value=3.3e-12  Score=108.57  Aligned_cols=51  Identities=35%  Similarity=0.720  Sum_probs=1.1

Q ss_pred             cCCcccccccccccC-------------C--ceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQED-------------E--TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~-------------~--~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      +++.|+||+++|...             +  .+..++ |+|.||..||.+||+.+.+||+||+++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CC-----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            468999999999752             1  233356 99999999999999999999999998754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.12  E-value=5.6e-11  Score=92.04  Aligned_cols=52  Identities=23%  Similarity=0.580  Sum_probs=42.3

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCcccccccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~  196 (392)
                      ..+...|+||++.|.+   ...++.|+|.||..||..|+..+  .+||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            3456799999999976   34466699999999999999866  6899999976543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.2e-11  Score=91.23  Aligned_cols=52  Identities=27%  Similarity=0.722  Sum_probs=42.8

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcccccccCCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMCRAHIVHET  197 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~v~~~~  197 (392)
                      ..+...|+||++.|.+   ...++ |||.||..||..|++   ....||+||..+....
T Consensus        17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            3456799999999875   55677 999999999999997   4568999999986543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=5.3e-11  Score=89.86  Aligned_cols=50  Identities=28%  Similarity=0.589  Sum_probs=41.6

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE  196 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~  196 (392)
                      .+...|+||++.+.+.   ..++ |||.||..||..|+. ...+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            3567899999999764   3367 999999999999994 567899999998654

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4.7e-11  Score=93.74  Aligned_cols=47  Identities=23%  Similarity=0.470  Sum_probs=41.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ....|+||++.|.+   ..+++ |+|.||..||..|+....+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            45789999999965   45688 9999999999999999999999999985

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.07  E-value=2.8e-11  Score=104.79  Aligned_cols=49  Identities=35%  Similarity=0.890  Sum_probs=42.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      ++..|+||++.|.+   .+.+| |||.||..||..|+..+.+||+||.++...
T Consensus        52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            34689999999965   56788 999999999999999999999999988543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.1e-10  Score=91.35  Aligned_cols=51  Identities=22%  Similarity=0.614  Sum_probs=42.6

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~  197 (392)
                      ...+|+||++.|..++..  . .|+|.||..||.+||+.+  .+||+||..+....
T Consensus        14 ~i~~C~IC~~~i~~g~~C--~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC--S-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             CCCcCcchhhHcccCCcc--C-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            357999999999876433  3 499999999999999987  78999999887554

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.6e-10  Score=90.35  Aligned_cols=52  Identities=27%  Similarity=0.652  Sum_probs=43.7

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc------CCCCCcccccccCCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS------HINCPMCRAHIVHET  197 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~  197 (392)
                      ..+...|+||++.|.+   ...++ |+|.||..||..|+..      ...||+||..+....
T Consensus        16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            3356799999999975   45578 9999999999999987      778999999987654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.05  E-value=1.5e-10  Score=90.54  Aligned_cols=52  Identities=33%  Similarity=0.674  Sum_probs=43.4

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc------CCCCCcccccccCCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS------HINCPMCRAHIVHET  197 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~  197 (392)
                      ..+...|+||++.|...   ..++ |+|.||..||..|+..      ...||+||..+....
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            33567999999999763   4678 9999999999999987      668999999987543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.04  E-value=1.2e-10  Score=90.64  Aligned_cols=50  Identities=22%  Similarity=0.569  Sum_probs=42.9

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHE  196 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~  196 (392)
                      .+...|+||++.|.+   ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus         6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            457899999999975   45578 9999999999999987 77899999988654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=5.6e-11  Score=92.32  Aligned_cols=52  Identities=27%  Similarity=0.598  Sum_probs=43.3

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-------CCCCCcccccccCCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-------HINCPMCRAHIVHET  197 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~v~~~~  197 (392)
                      ..+...|+||++.|.+   .+.++ |||.||..||..|+..       ...||+||..+....
T Consensus         9 ~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            9 VQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             cccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            3456899999999976   44578 9999999999999986       567999999987643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.01  E-value=8.3e-11  Score=99.36  Aligned_cols=53  Identities=26%  Similarity=0.684  Sum_probs=45.5

Q ss_pred             cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+.    +.++.++ |||.||..||.+|++.+.+||+||..+....
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            467899999999763    4457788 9999999999999999999999999986543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.01  E-value=9.1e-11  Score=96.17  Aligned_cols=51  Identities=27%  Similarity=0.708  Sum_probs=42.6

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+  .+..++ |||.||..||..|+... .+||+||..+....
T Consensus        21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            46789999999975  233377 99999999999999987 68999999986543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.3e-10  Score=84.60  Aligned_cols=44  Identities=32%  Similarity=0.805  Sum_probs=36.9

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcc
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMC  189 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlC  189 (392)
                      ..++..|+||++.|.+   .+.++ |||.||..||..|++   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456799999999975   45567 999999999999998   45579998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.96  E-value=1.7e-10  Score=93.95  Aligned_cols=50  Identities=24%  Similarity=0.678  Sum_probs=42.1

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      +...|+||++.|.+  .+..++ |||.||..||..|+..+.+||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            35789999999975  233347 999999999999999999999999988653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=4.8e-10  Score=81.86  Aligned_cols=43  Identities=35%  Similarity=0.932  Sum_probs=36.0

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcc
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMC  189 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlC  189 (392)
                      .+...|+||++.|.+.   +.++ |+|.||..||..|+.   ...+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3567999999999763   4578 999999999999954   56789998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=3.7e-10  Score=84.92  Aligned_cols=54  Identities=20%  Similarity=0.537  Sum_probs=42.4

Q ss_pred             cCCccccccc-ccccCCce-eecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCCC
Q 016298          144 EGTECSVCLN-EFQEDETV-RLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle-~~~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~  198 (392)
                      ++..|+||++ .|...... ..++ |||.||..||.+|+.. ...||+||..+.....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            3568999999 77665433 4567 9999999999999765 4679999999876543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.93  E-value=5.8e-10  Score=89.33  Aligned_cols=51  Identities=24%  Similarity=0.586  Sum_probs=41.4

Q ss_pred             CcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCccccccc
Q 016298          141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIV  194 (392)
Q Consensus       141 ~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~  194 (392)
                      ...+...|+||++.|.+   .+.+|.|||.||..||..|+...  .+||+||..+.
T Consensus         9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            34456899999999975   34566599999999999999754  58999999873

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.92  E-value=4.5e-10  Score=92.93  Aligned_cols=50  Identities=24%  Similarity=0.668  Sum_probs=42.7

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      +...|+||++.|.+  .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            46799999999975  344447 999999999999999999999999988653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.92  E-value=4.7e-10  Score=95.06  Aligned_cols=48  Identities=23%  Similarity=0.560  Sum_probs=41.2

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~  195 (392)
                      +...|+||++.|.+   ...+| |||.||..||..|+..+. +||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            45789999999975   55678 999999999999998555 89999999865

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.91  E-value=3.8e-10  Score=95.26  Aligned_cols=53  Identities=26%  Similarity=0.684  Sum_probs=44.8

Q ss_pred             cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|...    ..++.++ |||.||..||++|++.+.+||+||..+....
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            467899999998753    3346777 9999999999999999999999999987553

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.90  E-value=1e-09  Score=90.73  Aligned_cols=49  Identities=29%  Similarity=0.684  Sum_probs=40.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~v~~~  196 (392)
                      +...|+||++.|.+   ...++ |||.||..||..|+..+.   +||+||..+...
T Consensus        20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            35689999999975   34477 999999999999998654   899999988654

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.87  E-value=1.2e-09  Score=96.90  Aligned_cols=49  Identities=35%  Similarity=0.735  Sum_probs=41.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~  195 (392)
                      +...|+||++.|.+  .+.+++ |||.||..||..|+.. +.+||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            45689999999975  344457 9999999999999997 7789999999854

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.82  E-value=5.9e-09  Score=82.15  Aligned_cols=56  Identities=18%  Similarity=0.409  Sum_probs=42.8

Q ss_pred             cccCCcccccccccccCCc-eeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCCC
Q 016298          142 LIEGTECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHETV  198 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~  198 (392)
                      +.++.+|+||++.+...+. +..++ |||.||..||..|+. ....||+||..+.....
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            3456799999999865432 33345 999999999999875 45679999999876543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.81  E-value=1.3e-09  Score=91.65  Aligned_cols=51  Identities=27%  Similarity=0.595  Sum_probs=42.9

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~~  196 (392)
                      ..+...|+||++.|.+   ...++ |||.||..||..|+.... +||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            3456799999999975   45578 999999999999998765 899999998654

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.80  E-value=1.7e-09  Score=90.43  Aligned_cols=50  Identities=24%  Similarity=0.507  Sum_probs=42.4

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+   ...++ |||.||..||..|+.. ..+||+||..+....
T Consensus        22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            35789999999965   45578 9999999999999987 778999999987654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.79  E-value=2.8e-09  Score=93.88  Aligned_cols=49  Identities=18%  Similarity=0.523  Sum_probs=42.1

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~~  196 (392)
                      +...|+||++.|.+   ...+| |||.||..||..|+.... +||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            45789999999975   45578 999999999999998765 799999998765

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.78  E-value=6.6e-10  Score=92.81  Aligned_cols=48  Identities=27%  Similarity=0.783  Sum_probs=41.0

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~  195 (392)
                      ++..|+||++.|..   .+.++ |||.||..||..|+.. ..+||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            46789999999975   45668 9999999999999976 6689999998864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.78  E-value=1.7e-09  Score=79.46  Aligned_cols=47  Identities=28%  Similarity=0.656  Sum_probs=39.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+   .+.+| |+|.||..||..|   ...||+||..+..+.
T Consensus         5 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             cCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            46789999999976   46788 9999999999884   667999999886543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.75  E-value=3.4e-09  Score=80.15  Aligned_cols=47  Identities=19%  Similarity=0.459  Sum_probs=40.1

Q ss_pred             cCCcccccccccccCCceeec--CCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLL--PKCNHA-FHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~l--p~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ++..|.||++.+.+   ...+  | |||. |+..|+..|+..+..||+||.++.
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            46789999998755   3444  9 9999 899999999998899999999874

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.73  E-value=6e-09  Score=83.13  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=44.0

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+..+.+||+||..+....
T Consensus        13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   62 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM   62 (85)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence            46799999999976   66788 9999999999999999999999999886543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.69  E-value=8e-09  Score=85.06  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+..+.+||+||.++.....
T Consensus        28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L   78 (100)
T 2kre_A           28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESML   78 (100)
T ss_dssp             TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred             HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence            46799999999976   56788 99999999999999988999999999876543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.68  E-value=5e-09  Score=87.94  Aligned_cols=47  Identities=28%  Similarity=0.629  Sum_probs=40.0

Q ss_pred             cCCcccccccccccCCceeec-CCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      +...|+||++.|.+   ...+ + |||.||..||..|+.  ..||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            46799999999975   3455 7 999999999999998  7899999998544

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.67  E-value=1.1e-08  Score=83.88  Aligned_cols=51  Identities=16%  Similarity=0.164  Sum_probs=44.4

Q ss_pred             cCCcccccccccccCCceeecCCCC-CcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCN-HAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      ++..|+||++.|.+   .++++ || |.|+..||..||..+.+||+||.++.....
T Consensus        21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L   72 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence            46789999999976   56688 99 999999999999988999999999876543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.66  E-value=8.3e-09  Score=77.72  Aligned_cols=49  Identities=18%  Similarity=0.409  Sum_probs=39.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ....|.||++...+. .+..+| |||. |+..|+..|.+....||+||.++.
T Consensus         6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            467899999986542 122348 9998 999999999988889999999874

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.65  E-value=1.2e-08  Score=102.76  Aligned_cols=48  Identities=29%  Similarity=0.800  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE  196 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~  196 (392)
                      ...|+||++.+.+   ++.+| |||.||..||..|+. .+.+||+||..+...
T Consensus       332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3689999999854   67788 999999999999998 678899999988654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.61  E-value=8e-09  Score=90.05  Aligned_cols=50  Identities=28%  Similarity=0.482  Sum_probs=41.6

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccCC
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHE  196 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~~  196 (392)
                      .+...|+||++.|.+.   ..++ |||.||..||..|+.... +||+||.++...
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            3467999999999763   4577 999999999999998665 899999987543

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.61  E-value=1.1e-08  Score=100.90  Aligned_cols=53  Identities=25%  Similarity=0.640  Sum_probs=40.5

Q ss_pred             cCCcccccccccccCCce----eecCCCCCcCChhHHHHHHhcC-----------CCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETV----RLLPKCNHAFHISCIDTWLSSH-----------INCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~v----r~lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~v~~~  196 (392)
                      ...+|+||++.+.++..+    -..+.|+|.||..||.+||++.           .+||.||.++...
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            467999999999873322    1223599999999999999753           4699999988643

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.60  E-value=9.1e-09  Score=79.75  Aligned_cols=44  Identities=27%  Similarity=0.716  Sum_probs=37.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      ++..|+||++.+.+   ...+| |||. ||..|+..|    ..||+||..+..
T Consensus        23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            35689999998865   66788 9999 999999999    889999998754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.52  E-value=6.4e-08  Score=72.49  Aligned_cols=48  Identities=25%  Similarity=0.643  Sum_probs=37.6

Q ss_pred             cCCcccccccccccCCceeecCCCC--C---cCChhHHHHHHhc--CCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCN--H---AFHISCIDTWLSS--HINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~v~~  195 (392)
                      +...|.||+++..  +.+ ++| |.  |   .||..||.+|+..  +.+||+|+..+..
T Consensus         5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            4678999999842  333 588 66  4   9999999999974  5779999988753

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=3.5e-08  Score=79.97  Aligned_cols=52  Identities=21%  Similarity=0.419  Sum_probs=40.8

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC------CCCCc--cccc-ccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH------INCPM--CRAH-IVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~------~tCPl--CR~~-v~~~  196 (392)
                      ..+...|+||++.|.+   .++++.|||.|+..||..||..+      .+||+  |+.. +...
T Consensus         4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~   64 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS   64 (94)
T ss_dssp             CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred             CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence            3456789999999976   44553499999999999999864      48999  9876 5443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.45  E-value=5.5e-08  Score=86.48  Aligned_cols=51  Identities=27%  Similarity=0.610  Sum_probs=42.3

Q ss_pred             cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCC
Q 016298          142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHE  196 (392)
Q Consensus       142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~  196 (392)
                      ..+...|+||++.|.+   .+.++ |||.||..||..|+... .+||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            3456799999999976   35577 99999999999999864 4899999988654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.44  E-value=7.5e-08  Score=90.87  Aligned_cols=50  Identities=14%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+   .+++| |||.||..||..|+..+ .+||+||.++....
T Consensus       207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~  257 (281)
T 2c2l_A          207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ  257 (281)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence            46789999999976   56788 99999999999999864 45999999886543

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=3.2e-07  Score=70.10  Aligned_cols=45  Identities=33%  Similarity=0.801  Sum_probs=37.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      +...|.||++...+   +..+| |+|. |+..|+..    ...||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            46789999998754   77899 9999 99999984    57899999988653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=1.6e-07  Score=72.75  Aligned_cols=43  Identities=26%  Similarity=0.709  Sum_probs=36.1

Q ss_pred             CCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      ...|+||++.+.+   +..+| |||. ||..|+..    ...||+||..+..
T Consensus        25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            4689999999865   56788 9999 99999964    4789999998855

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.33  E-value=1.7e-07  Score=75.45  Aligned_cols=48  Identities=23%  Similarity=0.727  Sum_probs=40.1

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--------CCCCCc--cccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--------HINCPM--CRAH  192 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCPl--CR~~  192 (392)
                      +..+|+||++++...+.+.+.+ |+|.||.+||..|+..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4568999999998877777677 9999999999999863        136999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.28  E-value=1.4e-07  Score=74.21  Aligned_cols=45  Identities=33%  Similarity=0.735  Sum_probs=37.8

Q ss_pred             cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVHE  196 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~~  196 (392)
                      ++..|.||++.+.+   +..+| |||. |+..|+..|    ..||+||..+...
T Consensus        17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            35689999998754   67789 9999 999999987    3899999988653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.25  E-value=4.8e-07  Score=82.05  Aligned_cols=53  Identities=11%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             CcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCC
Q 016298          141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHET  197 (392)
Q Consensus       141 ~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~  197 (392)
                      ...+...|+||++.|.+   .+++| |||.|+..||..|+..+ .+||+||.++....
T Consensus       102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~  155 (179)
T 2f42_A          102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ  155 (179)
T ss_dssp             CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence            33457899999999986   56678 99999999999999864 46999999886543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.06  E-value=1.2e-06  Score=65.70  Aligned_cols=49  Identities=14%  Similarity=0.210  Sum_probs=42.2

Q ss_pred             CcccccccccccCCceeec-CCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          146 TECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       146 ~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      ..|+||++.|.+   ..++ + |||.|...||.+||+.+.+||+++.++.....
T Consensus         4 ~~CpIs~~~m~d---PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L   53 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   53 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             EEecCCCCCCCC---CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence            579999999985   3555 6 99999999999999988899999999876554

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.05  E-value=8.8e-07  Score=87.99  Aligned_cols=44  Identities=32%  Similarity=0.786  Sum_probs=37.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      ++..|+||++.+.+   +..+| |||. ||..|+..|    ..||+||..+..
T Consensus       294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            45789999999865   66778 9999 999999998    789999998753

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.00  E-value=1.4e-06  Score=83.30  Aligned_cols=52  Identities=19%  Similarity=0.481  Sum_probs=41.7

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCc--ccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPM--CRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPl--CR~~v~~~~~  198 (392)
                      ....|+||++.|.+  .|+... |||.|+..||..|+..+  .+||+  ||..+.....
T Consensus       180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL  235 (267)
T 3htk_C          180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF  235 (267)
T ss_dssp             CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred             eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence            45689999999976  355456 99999999999999865  36999  9998765443

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.71  E-value=1.5e-05  Score=65.38  Aligned_cols=46  Identities=24%  Similarity=0.533  Sum_probs=38.2

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccC
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVH  195 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~  195 (392)
                      -|.+|--.+..  ..|+.| |+|+||.+|+..|.+ ..++||.|+.+|..
T Consensus         3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            47888777654  588999 999999999999985 56789999998854

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.51  E-value=6.7e-05  Score=70.75  Aligned_cols=50  Identities=22%  Similarity=0.596  Sum_probs=40.7

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC--CCCcccccccCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI--NCPMCRAHIVHET  197 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~~v~~~~  197 (392)
                      -..|+||.+.+..+  .+.-. |+|.||..|+..|++.+.  .||.|+..+....
T Consensus       180 i~~C~iC~~iv~~g--~~C~~-C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~  231 (238)
T 3nw0_A          180 VKICNICHSLLIQG--QSCET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI  231 (238)
T ss_dssp             CCBCTTTCSBCSSC--EECSS-SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred             CCcCcchhhHHhCC--cccCc-cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            56899999998865  33333 999999999999998655  7999999876553

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.29  E-value=0.099  Score=39.41  Aligned_cols=46  Identities=28%  Similarity=0.617  Sum_probs=33.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC----CCCcccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI----NCPMCRAHI  193 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~v  193 (392)
                      ....|.||.+.   ++.+.-- .|...||..|++..|....    .||.|....
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            45789999753   4444444 4999999999998886543    599997543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.59  E-value=0.078  Score=42.35  Aligned_cols=35  Identities=17%  Similarity=0.448  Sum_probs=26.4

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW  179 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W  179 (392)
                      ++..|.||++.+.......-+. |+|.|+..|+..|
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            4578999998754333334477 9999999999984

>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A

Probab=90.68  E-value=0.61  Score=32.14  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=24.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Q 016298           56 PPYVIIFVALVLSFILFLAFYVIKSKTGWCNSE   88 (392)
Q Consensus        56 s~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR   88 (392)
                      .|+.+|+++++++++++.++..+..|+.|..|.
T Consensus         8 vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR~   40 (42)
T 2k1a_A            8 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRN   40 (42)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence            456677888888888887776666677777544

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=90.60  E-value=0.24  Score=36.03  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Q 016298           56 PPYVIIFVALVLSFILFLAFYVIKSKTGWCNSET   89 (392)
Q Consensus        56 s~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR~   89 (392)
                      .++.+|+++++++++++.++..+..||.|..|++
T Consensus        10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~   43 (54)
T 2knc_A           10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   43 (54)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            4566777888888888777666666777776544

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=90.46  E-value=0.24  Score=35.95  Aligned_cols=33  Identities=15%  Similarity=0.357  Sum_probs=22.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Q 016298           57 PYVIIFVALVLSFILFLAFYVIKSKTGWCNSET   89 (392)
Q Consensus        57 ~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR~   89 (392)
                      |+.||+++++++++++.++..+..|+.|.+|.+
T Consensus         8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~   40 (54)
T 2l8s_A            8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPL   40 (54)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            456677788888887777666666766776544

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=84.42  E-value=0.97  Score=35.77  Aligned_cols=35  Identities=20%  Similarity=0.556  Sum_probs=23.5

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW  179 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W  179 (392)
                      ..++.|.||- .|...+....- -|+-+||..|+.+-
T Consensus        13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~   47 (89)
T 1wil_A           13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred             CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence            3578999995 33333322211 28999999999996

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=80.57  E-value=0.73  Score=33.84  Aligned_cols=44  Identities=27%  Similarity=0.700  Sum_probs=31.1

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCcccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRA  191 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~  191 (392)
                      .+..|.||...   ++.+.-- .|...||..|+..-+..    .-.||.|+.
T Consensus        10 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A           10 HQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence            46789999863   3444433 58899999999975532    234999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-19
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	6e-12
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	7e-10
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	8e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-09
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-08
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 79.5 bits (196), Expect = 1e-19
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
           +G EC+VCL E ++ E  R LP+C H FH  C+D WL SH  CP+CR  +V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 58.4 bits (141), Expect = 6e-12
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
               C +CL +         LP C HAF   CI  W+  +  CP+C+  +
Sbjct: 4   VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 7e-10
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 143 IEGTECSVCLNEFQEDETVRLLP-KCNHAFHISCIDTWLS-SHINCPMCRAHI 193
           ++   C  C      + +++L+   C H    SC+D        NCP C   +
Sbjct: 1   MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 8e-10
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE 196
           EC +C+   + D+       C +     C     +  +  CP CR     +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 14/63 (22%)

Query: 143 IEGTECSVCLNEFQEDETVRLLP--------------KCNHAFHISCIDTWLSSHINCPM 188
           I    C++C N   +                       CNHAFH  CI  WL +   CP+
Sbjct: 19  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78

Query: 189 CRA 191
              
Sbjct: 79  DNR 81

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 5e-09
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHI 193
           C +C    ++   V++ P C H    SC+ +W  S    CP CR  I
Sbjct: 26  CKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 134 CRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPM 188
           C     +  +      +  ++      V  L KC+HAFH+ C+     +      + CP 
Sbjct: 28  CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87

Query: 189 CRAHIVHETVTAP 201
           C+     +T T P
Sbjct: 88  CKTIYGEKTGTQP 100

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
            +   C  C  E +     +LLP C H     C++      + CP+C+A  
Sbjct: 4   FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 42.5 bits (99), Expect = 2e-06
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 144 EGTECSVCLNEFQEDETVRLLPK-CNHAFHISCIDTWLSSHIN--CPMCRA 191
           +   C +C  E   +              H SC+ TWL+   N  C +C  
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 6e-06
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN--------CPMCR 190
           + C +CL E+  ++   +   C   F   C+  ++   I         CP   
Sbjct: 6   SGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 140 EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH---INCPMCRAHI 193
             + +  EC +CL   +E         C+H F   C+   L+       CP+C+  I
Sbjct: 16  NAMQKILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHIVHETVTAPL 202
           C +C +   +     +   C H F   CI   L    + CP CR       + +P+
Sbjct: 26  CQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPV 77

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 140 EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
           + L +   CS C N  +E      L  C H F  +C+   + +   CP+C      +
Sbjct: 17  DRLEKLLRCSRCTNILREPVC---LGGCEHIFCSNCVSDCIGTG--CPVCYTPAWIQ 68

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (76), Expect = 0.003
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
           C++     +        PK    F  S ++ ++    N P+    +  E
Sbjct: 3   CAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.62
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.39
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.39
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.33
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.31
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.23
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.1
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.04
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.04
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.98
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.89
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.83
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.71
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.69
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.53
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.29
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.78
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	85.11
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	81.35
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	80.72

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.62  E-value=9.6e-17  Score=117.16  Aligned_cols=52  Identities=50%  Similarity=1.236  Sum_probs=47.3

Q ss_pred             ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      .++.+|+||+++|..++.++.++.|+|.||..||.+||+.+.+||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            3567899999999999999888679999999999999999999999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.6e-13  Score=113.18  Aligned_cols=57  Identities=28%  Similarity=0.664  Sum_probs=44.6

Q ss_pred             cCCccccccccccc---------------CCceeecCCCCCcCChhHHHHHHhcC-----CCCCcccccccCCCCCCC
Q 016298          144 EGTECSVCLNEFQE---------------DETVRLLPKCNHAFHISCIDTWLSSH-----INCPMCRAHIVHETVTAP  201 (392)
Q Consensus       144 ~~~~C~ICle~~~~---------------~~~vr~lp~C~H~FH~~CI~~Wl~~~-----~tCPlCR~~v~~~~~~~~  201 (392)
                      .++.|+||+++|..               ...+++++ |+|.||..||..||+..     .+||+||+.+..+....|
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP  100 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQP  100 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCT
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCC
Confidence            35689999999854               22456777 99999999999999753     479999999877654443

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.39  E-value=7.4e-14  Score=105.57  Aligned_cols=48  Identities=31%  Similarity=0.866  Sum_probs=42.6

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~  194 (392)
                      ..+.|+||++.|.+  .++.+| |+|.||..||.+|++.+.+||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            46789999999964  467788 9999999999999999999999999864

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-13  Score=107.54  Aligned_cols=51  Identities=33%  Similarity=0.677  Sum_probs=43.1

Q ss_pred             cCCcccccccccccCC---------------ceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298          144 EGTECSVCLNEFQEDE---------------TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH  195 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~  195 (392)
                      .++.|+||++.+....               .+..++ |+|.||..||.+||+.+.+||+||+++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            3567999999886532               356677 99999999999999999999999998754

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.7e-13  Score=97.30  Aligned_cols=48  Identities=21%  Similarity=0.479  Sum_probs=40.6

Q ss_pred             cccccccccccCCc-eeecCCCCCcCChhHHHHHHhcC-CCCCcccccccC
Q 016298          147 ECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVH  195 (392)
Q Consensus       147 ~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~  195 (392)
                      +|+||+++|..++. ++.++ |||.||..||++|++.. .+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999999987654 45567 99999999999999864 469999999864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-12  Score=96.64  Aligned_cols=53  Identities=21%  Similarity=0.507  Sum_probs=41.8

Q ss_pred             cCCcccccccccccCC--ceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDE--TVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~--~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~  197 (392)
                      ++..|+||++.+..+.  .+.+++ |+|.||..||.+|+.. +.+||+||..+....
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            4679999999864432  345667 9999999999999965 557999999885543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.5e-12  Score=97.90  Aligned_cols=48  Identities=31%  Similarity=0.814  Sum_probs=41.2

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHE  196 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~  196 (392)
                      ...|+||++.+.+   ++++| |||.||..||..||.. +.+||+||..|...
T Consensus        23 ~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            3579999998864   77898 9999999999999985 56799999998654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=9.3e-12  Score=90.39  Aligned_cols=49  Identities=18%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      .|+||++.|.+   ..+++.|||.||.+||.+||+.+.+||+||.++...+.
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            69999999975   44555599999999999999999999999999876543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.3e-11  Score=88.44  Aligned_cols=48  Identities=27%  Similarity=0.622  Sum_probs=39.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  198 (392)
                      +...|+||++.|.+   .+++| |||.||..||++|   +.+||+||..+.....
T Consensus         5 ~~l~C~IC~~~~~~---p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCCcccCcccCC---CEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            34689999999975   56788 9999999999876   6679999999876543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=4.3e-11  Score=94.41  Aligned_cols=53  Identities=25%  Similarity=0.537  Sum_probs=43.6

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCCCCCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHETVTAP  201 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~~~~  201 (392)
                      ...|+||++.|.+   .++++ |||.||..||.+|++.+ .+||+||.++......++
T Consensus        23 ~l~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P   76 (86)
T d1rmda2          23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP   76 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred             CcCCccCCcchhc---ceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCH
Confidence            4579999999865   66788 99999999999999754 579999999876654433

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.6e-10  Score=93.50  Aligned_cols=48  Identities=29%  Similarity=0.690  Sum_probs=40.0

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcccccccCC
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMCRAHIVHE  196 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~v~~~  196 (392)
                      ...|+||++.|.+   ...++ |||.||..||..|+....   .||+||..+...
T Consensus        21 ~l~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CcCCCccCchhCC---eEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            4689999999975   45578 999999999999997653   699999987544

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.89  E-value=4.1e-10  Score=82.41  Aligned_cols=48  Identities=23%  Similarity=0.573  Sum_probs=37.2

Q ss_pred             cCCcccccccccccCCceeecC----CCCCcCChhHHHHHHh--cCCCCCccccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLP----KCNHAFHISCIDTWLS--SHINCPMCRAHIV  194 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp----~C~H~FH~~CI~~Wl~--~~~tCPlCR~~v~  194 (392)
                      +...|.||++++....   +.|    +|+|.||..||.+|+.  .+.+||+||+.+.
T Consensus         5 d~~~C~IC~~~~~~~~---~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNER---FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCC---CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCce---eEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4678999999986532   233    2459999999999995  4568999999875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.3e-10  Score=89.87  Aligned_cols=49  Identities=29%  Similarity=0.613  Sum_probs=39.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  197 (392)
                      +...|+||++.|.+.  +.+.+ |||.||..||..|+.  ..||.||..+....
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             hcCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            356899999999764  44456 999999999999985  45999998876544

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=4.1e-09  Score=80.72  Aligned_cols=51  Identities=20%  Similarity=0.531  Sum_probs=42.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHETV  198 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~  198 (392)
                      ++..|+||++.|.+   .++++ |||.|+..||..|+..+ .+||.|+.++.....
T Consensus         7 ~~l~CpIc~~~m~d---PV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l   58 (78)
T d1t1ha_           7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL   58 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred             ccCCCcCcCchhhC---ceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcccc
Confidence            56799999999976   45678 99999999999999865 569999998866543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=4.3e-09  Score=81.06  Aligned_cols=50  Identities=14%  Similarity=0.194  Sum_probs=42.0

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHET  197 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~  197 (392)
                      ++..|+||++.|.+   ..+++ |||.|+..||..|+.. +.+||+||.++....
T Consensus         6 ~~l~CpIc~~l~~d---Pv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           6 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             ccccCcCcCchhhh---hcccC-CcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            56789999999976   45688 9999999999999975 557999999876543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-08  Score=80.42  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=44.3

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT  199 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  199 (392)
                      ++..|+||++.|.+   .+++|.|+|.|+..||..||..+.+||+||.++......
T Consensus        21 ~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~   73 (98)
T d1wgma_          21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR   73 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred             HHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccchhhc
Confidence            46799999999987   567773456899999999999999999999998765443

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-07  Score=74.88  Aligned_cols=46  Identities=22%  Similarity=0.668  Sum_probs=37.5

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--------CCCCccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--------INCPMCR  190 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--------~tCPlCR  190 (392)
                      ...+|+||++++...+.++.++ |+|.||.+||..|+...        -.||.|+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            3578999999998777777777 99999999999999621        1499864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.056  Score=36.53  Aligned_cols=44  Identities=32%  Similarity=0.775  Sum_probs=30.5

Q ss_pred             cccccccccccCCceeecCCCCCcCChhHHHHHHhcCC----CCCcccc
Q 016298          147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI----NCPMCRA  191 (392)
Q Consensus       147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~  191 (392)
                      .|.||...-..+..+. -..|...||..|++.-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~-Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLIL-CDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEE-CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEE-cCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5888976654443343 345999999999998765322    4999974

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.32  Score=36.40  Aligned_cols=38  Identities=21%  Similarity=0.589  Sum_probs=27.0

Q ss_pred             CCcccCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298          140 EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW  179 (392)
Q Consensus       140 ~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W  179 (392)
                      +....+..|.|| +.|...+..-. .-|+-+||..|+.+-
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~pC-RvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFPC-RVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSSC-SSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-Ccccccceecc-eeecchhhHHHHHHh
Confidence            344567899999 77766543211 138899999999986

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.35  E-value=0.19  Score=35.17  Aligned_cols=45  Identities=27%  Similarity=0.603  Sum_probs=30.9

Q ss_pred             cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298          144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH  192 (392)
Q Consensus       144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~  192 (392)
                      ..+.|.+|.+.   ++.+.-- .|.-.||..|+...+..    .-.||.|+..
T Consensus         8 ~~~~C~~C~~~---g~lv~Cd-~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           8 HMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CcCCCcCCCCC---CeEEEeC-CCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            45679999853   4434333 48999999999866543    2359999754

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.72  E-value=0.36  Score=34.61  Aligned_cols=45  Identities=27%  Similarity=0.591  Sum_probs=30.1

Q ss_pred             CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC----CCCcccccc
Q 016298          145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI----NCPMCRAHI  193 (392)
Q Consensus       145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~v  193 (392)
                      ...|.||..   .++.+.-- .|...||..|+...+....    .||.|+..-
T Consensus         7 c~~C~~C~~---~~~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           7 ATICRVCQK---PGDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSCCSSSCS---SSCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCC---cCEEEECC-CCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            346777754   34444433 5999999999998775332    499996443