Citrus Sinensis ID: 016317

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEHEHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHcHHHHHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mpwltwdgiymgpgTMVLVISWVTTLNTMWQMINlhecvpgvrfdryidlgrhafgpklgpwivlpqqLIVQVGCDIVYMVTGGKCLKKFVEMacshckplrQTFWILIFGSLHFFlsqlpdinsvsSVSLAAAVMSLSYSTIAWagslshgrienvsyaykhtssaDYMFRVFNALGQISFAFAGHAVALEIQatipstpekpskiLMWKGALGAYFVNAICYFPVALIGYwafgqdvddnVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMmikrmnfppgaAVRVVARSAYVAFTLFVGvtfpffgdllgffggfgftptsyflpsimwlvikkpkrfspkwiINWASIFIGVFIMLASTIGGfrnivadastysfyt
MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINsvssvslaaavmslsysTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGaavrvvarsayvaFTLFVGVtfpffgdllgffggfgftptSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
**WLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST**KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSF**
MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
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MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q9C6M2440 Lysine histidine transpor yes no 0.984 0.875 0.756 1e-166
Q9FKS8446 Lysine histidine transpor no no 0.971 0.852 0.613 1e-138
Q9C733453 Lysine histidine transpor no no 0.971 0.838 0.586 1e-129
Q9LRB5441 Lysine histidine transpor no no 0.971 0.861 0.589 1e-127
Q9SR44441 Lysine histidine transpor no no 0.971 0.861 0.594 1e-124
O22719451 Lysine histidine transpor no no 0.946 0.820 0.529 1e-111
Q9C9J0448 Lysine histidine transpor no no 0.971 0.848 0.548 1e-107
Q9SS86455 Lysine histidine transpor no no 0.946 0.813 0.517 1e-105
Q9SX98519 Lysine histidine transpor no no 0.961 0.724 0.358 7e-63
Q84WE9478 Lysine histidine transpor no no 0.864 0.707 0.323 6e-43
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function desciption
 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/390 (75%), Positives = 335/390 (85%), Gaps = 5/390 (1%)

Query: 1   MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLG 60
           M +L W     GPGT VL ++W  TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLG
Sbjct: 55  MAYLGW-----GPGTFVLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLG 109

Query: 61  PWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120
           PWIVLPQQLIVQVGC+IVYMVTGGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQL
Sbjct: 110 PWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQL 169

Query: 121 PDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQI 180
           P+ NSV+ VSLAAAVMSL YSTIAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQI
Sbjct: 170 PNFNSVAGVSLAAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQI 229

Query: 181 SFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD 240
           SFAFAGHAVALEIQAT+PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVD
Sbjct: 230 SFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVD 289

Query: 241 DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVA 300
           DNVLM L+RP WLIAAANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G  +R   
Sbjct: 290 DNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFT 349

Query: 301 RSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWA 360
           R+ YVAFTLF+GV+FPFFGDLLGFFGGFGF PTS+FLPSIMWL+IKKP+RFS  W +NW 
Sbjct: 350 RTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWI 409

Query: 361 SIFIGVFIMLASTIGGFRNIVADASTYSFY 390
           SI +GVFIMLASTIGG RNI+AD+STYSFY
Sbjct: 410 SIIVGVFIMLASTIGGLRNIIADSSTYSFY 439
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
224111726423 lysine/histidine transporter [Populus tr 0.971 0.898 0.844 0.0
224099345435 lysine/histidine transporter [Populus tr 0.987 0.887 0.826 1e-180
147858122420 hypothetical protein VITISV_012213 [Viti 0.987 0.919 0.813 1e-178
225423911438 PREDICTED: lysine histidine transporter- 0.987 0.881 0.813 1e-178
356535563419 PREDICTED: lysine histidine transporter- 0.987 0.921 0.805 1e-176
449434650437 PREDICTED: lysine histidine transporter- 0.987 0.883 0.800 1e-175
356495960437 PREDICTED: lysine histidine transporter- 0.976 0.874 0.799 1e-174
357488425439 Lysine/histidine transporter [Medicago t 0.976 0.870 0.791 1e-174
388513405439 unknown [Lotus japonicus] 0.976 0.870 0.794 1e-171
357443021460 Lysine/histidine transporter [Medicago t 0.987 0.839 0.724 1e-166
>gi|224111726|ref|XP_002315954.1| lysine/histidine transporter [Populus trichocarpa] gi|222864994|gb|EEF02125.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/380 (84%), Positives = 350/380 (92%)

Query: 12  GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIV 71
           GPG MVL +SW  TLNTMWQMI LHECVPG RFDRYIDLGRHAFGPKLGPWIVLPQQLIV
Sbjct: 44  GPGIMVLALSWCMTLNTMWQMIQLHECVPGTRFDRYIDLGRHAFGPKLGPWIVLPQQLIV 103

Query: 72  QVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 131
           QVGCDIVYMVTGGKCLKKF+EM C+ C P+RQ++WILIFG +HFFLSQLP+ NSV+ VSL
Sbjct: 104 QVGCDIVYMVTGGKCLKKFMEMTCASCTPIRQSYWILIFGGIHFFLSQLPNFNSVAGVSL 163

Query: 132 AAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVAL 191
           AAAVMSLSYSTIAWAGSL+HG+I+NVSYAYK TS+ADYMFRVFNALG+ISFAFAGHAV L
Sbjct: 164 AAAVMSLSYSTIAWAGSLAHGQIDNVSYAYKSTSAADYMFRVFNALGEISFAFAGHAVVL 223

Query: 192 EIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPG 251
           EIQATIPSTPEKPSKI MWKGALGAYF+NAICYFPVA+IGYWAFGQDVDDNVL  LKRP 
Sbjct: 224 EIQATIPSTPEKPSKIPMWKGALGAYFINAICYFPVAIIGYWAFGQDVDDNVLTDLKRPA 283

Query: 252 WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFV 311
           WLIA+ANLMVVVHVIGSYQV+AMPVF +LE MM+KR+NFPPG A+R++ RS YVAFTLFV
Sbjct: 284 WLIASANLMVVVHVIGSYQVYAMPVFDMLERMMMKRLNFPPGIALRLLTRSTYVAFTLFV 343

Query: 312 GVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLA 371
           GVTFPFFGDLLGFFGGFGF PTSYFLP +MWL+IKKPKRFS KW INWA IF+GVFIM+A
Sbjct: 344 GVTFPFFGDLLGFFGGFGFAPTSYFLPCVMWLLIKKPKRFSTKWFINWACIFVGVFIMIA 403

Query: 372 STIGGFRNIVADASTYSFYT 391
           STIGGFRNIV D+STY FYT
Sbjct: 404 STIGGFRNIVTDSSTYRFYT 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099345|ref|XP_002311447.1| lysine/histidine transporter [Populus trichocarpa] gi|222851267|gb|EEE88814.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147858122|emb|CAN79675.1| hypothetical protein VITISV_012213 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225423911|ref|XP_002281867.1| PREDICTED: lysine histidine transporter-like 6 [Vitis vinifera] gi|297737853|emb|CBI27054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535563|ref|XP_003536314.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|449434650|ref|XP_004135109.1| PREDICTED: lysine histidine transporter-like 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495960|ref|XP_003516838.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357488425|ref|XP_003614500.1| Lysine/histidine transporter [Medicago truncatula] gi|355515835|gb|AES97458.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513405|gb|AFK44764.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357443021|ref|XP_003591788.1| Lysine/histidine transporter [Medicago truncatula] gi|355480836|gb|AES62039.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.984 0.875 0.661 1.6e-141
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.971 0.861 0.523 4.6e-112
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.971 0.852 0.518 3.9e-108
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.971 0.861 0.5 5.1e-106
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.971 0.861 0.502 6.5e-106
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.971 0.838 0.5 1.1e-101
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.971 0.848 0.467 8.1e-92
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.946 0.820 0.451 4.1e-88
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.961 0.724 0.327 1.4e-55
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.867 0.709 0.276 1.1e-34
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
 Identities = 258/390 (66%), Positives = 294/390 (75%)

Query:     1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLG 60
             M +L W     GPGT VL ++W  TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLG
Sbjct:    55 MAYLGW-----GPGTFVLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLG 109

Query:    61 PWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120
             PWIVLPQQLIVQVGC+IVYMVTGGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQL
Sbjct:   110 PWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQL 169

Query:   121 PDINXXXXXXXXXXXXXXXXXTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQI 180
             P+ N                 TIAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQI
Sbjct:   170 PNFNSVAGVSLAAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQI 229

Query:   181 SFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD 240
             SFAFAGHAVALEIQAT+PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVD
Sbjct:   230 SFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVD 289

Query:   241 DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXX 300
             DNVLM L+RP WLIAAANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G       
Sbjct:   290 DNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFT 349

Query:   301 XXXXXXFTLFVGVXXXXXXXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWA 360
                   FTLF+GV                    S+FLPSIMWL+IKKP+RFS  W +NW 
Sbjct:   350 RTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWI 409

Query:   361 SIFIGVFIMLASTIGGFRNIVADASTYSFY 390
             SI +GVFIMLASTIGG RNI+AD+STYSFY
Sbjct:   410 SIIVGVFIMLASTIGGLRNIIADSSTYSFY 439
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C6M2LHTL6_ARATHNo assigned EC number0.75640.98460.875yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrLHT3
lysine/histidine transporter (423 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-75
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 6e-16
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 1e-08
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  239 bits (612), Expect = 1e-75
 Identities = 121/380 (31%), Positives = 188/380 (49%), Gaps = 18/380 (4%)

Query: 11  MGPGTMVLVISWVTTLNTMWQMINLHECVPGV---RFDRYIDLGRHAFGPKLGPWIVLPQ 67
             PG ++LVI  + +L T+  ++   + V  V   R   Y DLG   FGPK G  ++L  
Sbjct: 33  WIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGKRRKSYGDLGYRLFGPK-GKLLILFA 91

Query: 68  QLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVS 127
            L+   G  I Y++  G  L    +     C  +   ++I+IFG +   LS +P+++++S
Sbjct: 92  ILVNLFGVCISYLIFAGDNLPAIFDSFFDTC-HISLVYFIIIFGLIFIPLSFIPNLSALS 150

Query: 128 SVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGH 187
            +SL AAV SL Y  I        G +           +   + R+F A+G I FAF GH
Sbjct: 151 ILSLVAAVSSL-YIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGH 209

Query: 188 AVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL 247
           AV L IQ T+ S P K     M K  L A  +  + Y  V L+GY AFG +V  N+L+ L
Sbjct: 210 AVLLPIQNTMKS-PSKFKA--MTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNL 266

Query: 248 KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR----MNFPPGAAVRVVARSA 303
            +  WLI  ANL++V+H++ SY + A P+  ++E ++ ++     + P    +RVV RS 
Sbjct: 267 PKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSG 326

Query: 304 YVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IIN 358
            V  T  + ++ PF GD L   G     P ++ LP +  L +KK K+ S +      I++
Sbjct: 327 LVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILD 386

Query: 359 WASIFIGVFIMLASTIGGFR 378
              I IG+ +M     G   
Sbjct: 387 VICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.97
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.86
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.84
PRK10483414 tryptophan permease; Provisional 99.83
PRK09664415 tryptophan permease TnaB; Provisional 99.82
PRK15132403 tyrosine transporter TyrP; Provisional 99.81
PRK13629443 threonine/serine transporter TdcC; Provisional 99.7
TIGR00814397 stp serine transporter. The HAAAP family includes 99.63
PRK10655438 potE putrescine transporter; Provisional 98.99
TIGR00909429 2A0306 amino acid transporter. 98.97
PRK11021410 putative transporter; Provisional 98.9
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.88
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.86
PRK10644445 arginine:agmatin antiporter; Provisional 98.85
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.83
PRK10746461 putative transport protein YifK; Provisional 98.82
PRK11357445 frlA putative fructoselysine transporter; Provisio 98.76
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 98.75
TIGR00930 953 2a30 K-Cl cotransporter. 98.74
PRK10249458 phenylalanine transporter; Provisional 98.74
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 98.74
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.72
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.71
PRK11387471 S-methylmethionine transporter; Provisional 98.69
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.67
PRK10238456 aromatic amino acid transporter; Provisional 98.67
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.64
TIGR00906 557 2A0303 cationic amino acid transport permease. 98.61
PRK10580457 proY putative proline-specific permease; Provision 98.61
TIGR00913478 2A0310 amino acid permease (yeast). 98.59
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.59
PRK15049499 L-asparagine permease; Provisional 98.56
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.53
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.53
KOG1287479 consensus Amino acid transporters [Amino acid tran 98.5
TIGR00911501 2A0308 L-type amino acid transporter. 98.5
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.45
PRK10836489 lysine transporter; Provisional 98.4
COG0531466 PotE Amino acid transporters [Amino acid transport 98.4
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.22
PRK15238496 inner membrane transporter YjeM; Provisional 98.13
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.1
COG0833541 LysP Amino acid transporters [Amino acid transport 98.03
PF03845320 Spore_permease: Spore germination protein; InterPr 97.92
COG3949349 Uncharacterized membrane protein [Function unknown 97.88
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.81
KOG3832319 consensus Predicted amino acid transporter [Genera 97.73
KOG1286554 consensus Amino acid transporters [Amino acid tran 97.59
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.44
PRK11375484 allantoin permease; Provisional 97.22
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.2
COG1457442 CodB Purine-cytosine permease and related proteins 96.9
PRK09442483 panF sodium/panthothenate symporter; Provisional 96.63
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.49
TIGR00813407 sss transporter, SSS family. have different number 96.22
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.12
COG0591493 PutP Na+/proline symporter [Amino acid transport a 95.88
PRK12488549 acetate permease; Provisional 95.69
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 95.51
COG4147529 DhlC Predicted symporter [General function predict 95.15
PRK11017404 codB cytosine permease; Provisional 95.05
PF01566358 Nramp: Natural resistance-associated macrophage pr 94.38
PRK10484523 putative transporter; Provisional 94.1
PRK15419502 proline:sodium symporter PutP; Provisional 93.76
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 93.74
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 93.38
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 92.98
PRK09395551 actP acetate permease; Provisional 92.23
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 91.97
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 91.78
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 91.55
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 91.23
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 90.33
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 90.06
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 88.42
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 88.11
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 87.91
COG0733439 Na+-dependent transporters of the SNF family [Gene 87.14
PRK00701439 manganese transport protein MntH; Reviewed 86.43
KOG1288 945 consensus Amino acid transporters [Amino acid tran 85.33
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 83.65
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 82.62
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-55  Score=408.37  Aligned_cols=365  Identities=20%  Similarity=0.240  Sum_probs=319.8

Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccC---CCcccccHHHHHHHhh----------CCCccCceehhh
Q 016317            1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGRHAF----------GPKLGPWIVLPQ   67 (391)
Q Consensus         1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~---~~~~~~~y~~l~~~~~----------G~~~g~~~v~~~   67 (391)
                      ||+||+++ ||+.|.+...+.+.++.|++|++++|.+..   .+....+|++.++.++          || ++|.+++++
T Consensus        68 lP~AFk~s-G~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~~g~-~~r~~V~~~  145 (449)
T KOG1304|consen   68 LPLAFKNS-GLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRKYGP-AARFVVNFF  145 (449)
T ss_pred             ChHHHHhc-chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHhhcH-HHHHHHHHH
Confidence            79998886 999999999999999999999999997532   2222468888888877          33 678999999


Q ss_pred             hhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 016317           68 QLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAG  147 (391)
Q Consensus        68 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~  147 (391)
                      +.++|+|.|++|+++++++++++.+...  ....+.+.|+.+..+..+|++++||+|.|+.+|.+|++..++...++.+.
T Consensus       146 L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y  223 (449)
T KOG1304|consen  146 LVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYY  223 (449)
T ss_pred             HHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999422  23668899999999999999999999999999999999877655555444


Q ss_pred             hhcccccccccccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccc-hhhhhHHHHHHHHHhhh
Q 016317          148 SLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM-WKGALGAYFVNAICYFP  226 (391)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~-~~~~~~~~~~~~i~y~~  226 (391)
                      ...+. +     +.++.+....+.+++..+|+.+|||+|+.++.|++++|    |+|+++.- .+++..++.+++++|+.
T Consensus       224 ~~~~~-~-----~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~  293 (449)
T KOG1304|consen  224 LVQDL-P-----PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIF  293 (449)
T ss_pred             HHhcc-C-----CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhcCCccchHHHHHHHHHHHHHH
Confidence            33322 1     11223445568899999999999999999999999997    89996542 27888999999999999


Q ss_pred             hhhhhhcccCCCCchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHH
Q 016317          227 VALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVA  306 (391)
Q Consensus       227 ~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (391)
                      +|++||++|||++++.|+.|+|+ ++..+.+++++++.+..+||++++|..|++|+.+.++-+.+++++.....|..+++
T Consensus       294 ~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVl  372 (449)
T KOG1304|consen  294 LGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVL  372 (449)
T ss_pred             HHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHH
Confidence            99999999999999999999999 89999999999999999999999999999999987776555578889999999999


Q ss_pred             HHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016317          307 FTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR---FSPKWIINWASIFIGVFIMLASTIGGFRNI  380 (391)
Q Consensus       307 ~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~---~~~~~~~~~~~i~~g~~~~v~g~~~~i~~l  380 (391)
                      ++..+|..+||++.+++++||++++.+++++|++++++.++++.   .+++++.+.+++++|++.++.|||++++++
T Consensus       373 lt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  373 LTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999999999999999999998775   367889999999999999999999999874

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.2
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.91
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.87
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.32
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 94.91
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 90.73
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.20  E-value=2.6e-10  Score=110.64  Aligned_cols=324  Identities=14%  Similarity=0.083  Sum_probs=166.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317           10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK   89 (391)
Q Consensus        10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~   89 (391)
                      |- .+++..++.++..........|...+.|+..  ..-+..++.+||++| ++..+..++.......++....++.++.
T Consensus        39 G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~  114 (445)
T 3l1l_A           39 GG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSY  114 (445)
T ss_dssp             CT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54 3677777778888888888888777666543  667788999998766 6666666665544444444433333332


Q ss_pred             HHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcch
Q 016317           90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADY  169 (391)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (391)
                      .++...   .+.....+.+ ...++.-....+..|....++.+.....+...++..+.......++....+.+ ......
T Consensus       115 ~~~~~~---~~~~~~~~~~-~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~  189 (445)
T 3l1l_A          115 FFPILK---DPWVLTITCV-VVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGT  189 (445)
T ss_dssp             TCGGGG---SHHHHHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC---------
T ss_pred             HCcccc---ccHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccC-ccCCcc
Confidence            221110   0011111111 11122222233455666666555544333222222222222211111111110 111223


Q ss_pred             HHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCc----hhh--
Q 016317          170 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DNV--  243 (391)
Q Consensus       170 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~----~~i--  243 (391)
                      ..++..++....|+|.+........+|+    |||+| +.+|+...+..++.++|....+......+.+.-    ++.  
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~  264 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGD  264 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHH
Confidence            5678889999999999999999999997    88976 778999999999999999887766555553321    111  


Q ss_pred             -hcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhc------CC-CCchhHHHHHHHHHHHHHHHHHhhc
Q 016317          244 -LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------NF-PPGAAVRVVARSAYVAFTLFVGVTF  315 (391)
Q Consensus       244 -l~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~ia~~i  315 (391)
                       ..+.. .++...+..+...+..+.+.--......+.+...-+.+.      +. +++...+...-...+...+.+....
T Consensus       265 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~  343 (445)
T 3l1l_A          265 AARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSIS  343 (445)
T ss_dssp             HHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence             11111 123444445555555555444444444344433332110      00 1112222222222211111111112


Q ss_pred             c----cchhhhhhhhccccchhHhhhHHHHHHHHhCCCC
Q 016317          316 P----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR  350 (391)
Q Consensus       316 p----~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~  350 (391)
                      |    .++.+.++.+  .+..+.|.++++.+++.+++++
T Consensus       344 ~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          344 PNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            3    3555555543  3457889999999999987765
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00